[med-svn] [SCM] cufflinks branch, master, updated. upstream/0.9.3-14-g1858896

[Alex Mestiashvili]

The following commit has been merged in the master branch:
commit 18588967fb57512852df763a2b44f923aa85e5d2
Author: Alex Mestiashvili <alex at biotec.tu-dresden.de>
Date:   Thu May 5 08:54:31 2011 +0000

    added headers for patches according http://dep.debian.net/deps/dep3/

diff --git a/debian/DRAFT b/debian/DRAFT
deleted file mode 100644
index 1d037b9..0000000
--- a/debian/DRAFT
+++ /dev/null
@@ -1,13 +0,0 @@
-cufflinks for Debian
---------------------
-
-This is a preliminary package tailored for the Debian operating system, but it
-has not been finished yet.
-
-If you think that it would be useful that this package is polished and uploaded
-to the Debian archive, please tell us on the Debian Med mailing list:
-
-Debian Med project <debian-med at lists.debian.org>
-http://lists.debian.org/debian-med/
-
- -- Charles Plessy <plessy at debian.org>  Fri, 16 Jul 2010 19:00:40 +0900
diff --git a/debian/patches/configure.patch b/debian/patches/configure.patch
index b8d86ff..1df4d58 100644
--- a/debian/patches/configure.patch
+++ b/debian/patches/configure.patch
@@ -1,3 +1,6 @@
+Description: changing configure script so it looks for bam.h in /usr/includes
+Author: Alex Mestiashvili <alex at biotec.tu-dresden.de>
+Last-Update: 2011-05-05
 --- cufflinks-0.9.3.orig/configure
 +++ cufflinks-0.9.3/configure
 @@ -4014,7 +4014,7 @@
diff --git a/debian/patches/fix_includes_path.patch b/debian/patches/fix_includes_path.patch
index 4063d3a..28da6da 100644
--- a/debian/patches/fix_includes_path.patch
+++ b/debian/patches/fix_includes_path.patch
@@ -1,3 +1,6 @@
+Description: changing header file location so it looks for sam.h in /usr/includes
+Author: Alex Mestiashvili <alex at biotec.tu-dresden.de>
+Last-Update: 2011-05-05
 --- cufflinks-0.9.3.orig/src/hits.h
 +++ cufflinks-0.9.3/src/hits.h
 @@ -16,7 +16,7 @@

-- 
Transcript assembly, differential expression, and differential regulation for RNA-Seq.