[med-svn] [SCM] tabix branch, meta, updated. meta/0.2.3-1-2-gb1a7274
Charles Plessy
plessy at debian.org
Sat May 7 12:16:09 UTC 2011
The following commit has been merged in the meta branch:
commit b1a727417417fc2eda53f57672f82093cf5fb599
Author: Charles Plessy <plessy at debian.org>
Date: Sat May 7 21:16:05 2011 +0900
Collected build logs for 0.2.4-1.
diff --git a/alpha.log b/alpha.log
deleted file mode 100644
index 433a110..0000000
--- a/alpha.log
+++ /dev/null
@@ -1,419 +0,0 @@
-From buildd at goetz.debian.org Thu Mar 17 08:53:49 2011
-Return-path: <buildd at goetz.debian.org>
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-From: buildd on goetz <buildd at goetz.debian.org>
-To: kurt at roeckx.be,logs at buildd.debian.org
-Subject: Log for successful build of tabix_0.2.3-1 on alpha (dist=sid)
-Content-Type: text/plain; charset=UTF-8
-Content-Transfer-Encoding: 8bit
-Message-Id: <E1Q08xe-000179-Ue at goetz.debian.org>
-Date: Thu, 17 Mar 2011 08:53:38 +0000
-Delivered-To: logs at buildd.debian.org
-
-sbuild (Debian sbuild) 0.60.5 (14 Nov 2010) on goetz.debian.org
-
-╔══════════════════════════════════════════════════════════════════════════════╗
-║ tabix 0.2.3-1 (alpha) 17 Mar 2011 08:51 ║
-╚══════════════════════════════════════════════════════════════════════════════╝
-
-Package: tabix
-Version: 0.2.3-1
-Architecture: alpha
-Chroot Build Dir: /var/lib/schroot/mount/sid-alpha-sbuild-7ddb5b31-a382-46bb-9bad-933f2df2a3be/build/buildd-tabix_0.2.3-1-alpha-SAqcrf
-Start Time: 20110317-0851
-Get:1 http://ftp.uk.debian.org unstable InRelease [147 kB]
-Get:2 http://incoming.debian.org unstable InRelease [147 kB]
-Get:3 http://ftp.uk.debian.org unstable/main Sources [4215 kB]
-Ign http://incoming.debian.org InRelease
-Get:4 http://incoming.debian.org Release.gpg [835 B]
-Get:5 http://ftp.uk.debian.org unstable/contrib Sources [39.2 kB]
-Get:6 http://ftp.uk.debian.org unstable/non-free Sources [81.3 kB]
-Get:7 http://ftp.uk.debian.org unstable/main alpha Packages [6828 kB]
-Get:8 http://incoming.debian.org unstable/main Sources [4215 kB]
-Get:9 http://ftp.uk.debian.org unstable/contrib alpha Packages [51.5 kB]
-Ign http://ftp.uk.debian.org unstable/contrib TranslationIndex
-Get:10 http://ftp.uk.debian.org unstable/main TranslationIndex [2232 B]
-Ign http://ftp.uk.debian.org unstable/contrib Translation-en
-Get:11 http://incoming.debian.org unstable/contrib Sources [39.2 kB]
-Get:12 http://incoming.debian.org unstable/non-free Sources [81.3 kB]
-Get:13 http://incoming.debian.org unstable/main alpha Packages [6828 kB]
-Get:14 http://incoming.debian.org unstable/contrib alpha Packages [51.5 kB]
-Ign http://incoming.debian.org unstable/contrib TranslationIndex
-Get:15 http://incoming.debian.org unstable/main TranslationIndex [2232 B]
-Get:16 http://incoming.debian.org Release [1604 B]
-Get:17 http://incoming.debian.org Sources [36.8 kB]
-Get:18 http://incoming.debian.org Packages [521 kB]
-Ign http://incoming.debian.org unstable/contrib Translation-en
-Ign http://incoming.debian.org Translation-en
-Fetched 23.3 MB in 29s (781 kB/s)
-Reading package lists...
-
-┌──────────────────────────────────────────────────────────────────────────────┐
-│ Fetch source files │
-└──────────────────────────────────────────────────────────────────────────────┘
-
-
-Check APT
-─────────
-
-Checking available source versions...
-
-Download source files with APT
-──────────────────────────────
-
-Reading package lists...
-Building dependency tree...
-Reading state information...
-NOTICE: 'tabix' packaging is maintained in the 'Git' version control system at:
-git://git.debian.org/debian-med/tabix.git
-Need to get 50.4 kB of source archives.
-Get:1 http://ftp.uk.debian.org/debian/ unstable/main tabix 0.2.3-1 (dsc) [1882 B]
-Get:2 http://ftp.uk.debian.org/debian/ unstable/main tabix 0.2.3-1 (tar) [46.4 kB]
-Get:3 http://ftp.uk.debian.org/debian/ unstable/main tabix 0.2.3-1 (diff) [2130 B]
-Fetched 50.4 kB in 0s (527 kB/s)
-Download complete and in download only mode
-
-Check arch
-──────────
-
-** Using build dependencies supplied by package:
-Build-Depends: cdbs, debhelper (>= 8), zlib1g-dev
-
-┌──────────────────────────────────────────────────────────────────────────────┐
-│ Install build dependencies (internal resolver) │
-└──────────────────────────────────────────────────────────────────────────────┘
-
-Checking for already installed source dependencies...
-cdbs: missing
-debhelper: missing
-Using default version 8.1.2
-zlib1g-dev: missing
-Checking for source dependency conflicts...
-Installing positive dependencies: cdbs debhelper zlib1g-dev
-Reading package lists...
-Building dependency tree...
-Reading state information...
-The following extra packages will be installed:
- bsdmainutils file gettext gettext-base groff-base html2text intltool-debian
- libcroco3 libglib2.0-0 libmagic1 libpcre3 libpipeline1 libunistring0 libxml2
- man-db po-debconf
-Suggested packages:
- wamerican wordlist whois vacation devscripts doc-base dh-make gettext-doc
- groff less www-browser libmail-box-perl
-Recommended packages:
- autotools-dev curl wget lynx-cur autopoint libglib2.0-data shared-mime-info
- xml-core libmail-sendmail-perl
-The following NEW packages will be installed:
- bsdmainutils cdbs debhelper file gettext gettext-base groff-base html2text
- intltool-debian libcroco3 libglib2.0-0 libmagic1 libpcre3 libpipeline1
- libunistring0 libxml2 man-db po-debconf zlib1g-dev
-0 upgraded, 19 newly installed, 0 to remove and 4 not upgraded.
-Need to get 11.0 MB of archives.
-After this operation, 32.1 MB of additional disk space will be used.
-Get:1 http://ftp.uk.debian.org/debian/ unstable/main bsdmainutils alpha 8.2.2 [215 kB]
-Get:2 http://ftp.uk.debian.org/debian/ unstable/main groff-base alpha 1.21-4 [1183 kB]
-Get:3 http://ftp.uk.debian.org/debian/ unstable/main libpipeline1 alpha 1.1.0-1 [39.4 kB]
-Get:4 http://ftp.uk.debian.org/debian/ unstable/main man-db alpha 2.5.9-4 [1070 kB]
-Get:5 http://ftp.uk.debian.org/debian/ unstable/main libmagic1 alpha 5.04-5 [243 kB]
-Get:6 http://ftp.uk.debian.org/debian/ unstable/main file alpha 5.04-5 [50.2 kB]
-Get:7 http://ftp.uk.debian.org/debian/ unstable/main gettext-base alpha 0.18.1.1-3 [160 kB]
-Get:8 http://ftp.uk.debian.org/debian/ unstable/main libpcre3 alpha 8.12-3 [285 kB]
-Get:9 http://ftp.uk.debian.org/debian/ unstable/main libxml2 alpha 2.7.8.dfsg-2 [901 kB]
-Get:10 http://ftp.uk.debian.org/debian/ unstable/main html2text alpha 1.3.2a-15 [111 kB]
-Get:11 http://ftp.uk.debian.org/debian/ unstable/main libglib2.0-0 alpha 2.28.2-1 [1676 kB]
-Get:12 http://ftp.uk.debian.org/debian/ unstable/main libcroco3 alpha 0.6.2-1 [128 kB]
-Get:13 http://ftp.uk.debian.org/debian/ unstable/main libunistring0 alpha 0.9.3-3 [447 kB]
-Get:14 http://ftp.uk.debian.org/debian/ unstable/main gettext alpha 0.18.1.1-3 [2218 kB]
-Get:15 http://ftp.uk.debian.org/debian/ unstable/main intltool-debian alpha 0.35.0+20060710.1 [30.8 kB]
-Get:16 http://ftp.uk.debian.org/debian/ unstable/main po-debconf alpha 1.0.16+nmu1 [223 kB]
-Get:17 http://ftp.uk.debian.org/debian/ unstable/main debhelper alpha 8.1.2 [553 kB]
-Get:18 http://ftp.uk.debian.org/debian/ unstable/main cdbs alpha 0.4.92 [1268 kB]
-Get:19 http://ftp.uk.debian.org/debian/ unstable/main zlib1g-dev alpha 1:1.2.3.4.dfsg-3 [206 kB]
-debconf: delaying package configuration, since apt-utils is not installed
-Fetched 11.0 MB in 1s (8346 kB/s)
-Selecting previously deselected package bsdmainutils.
-(Reading database ... 10145 files and directories currently installed.)
-Unpacking bsdmainutils (from .../bsdmainutils_8.2.2_alpha.deb) ...
-Selecting previously deselected package groff-base.
-Unpacking groff-base (from .../groff-base_1.21-4_alpha.deb) ...
-Selecting previously deselected package libpipeline1.
-Unpacking libpipeline1 (from .../libpipeline1_1.1.0-1_alpha.deb) ...
-Selecting previously deselected package man-db.
-Unpacking man-db (from .../man-db_2.5.9-4_alpha.deb) ...
-Selecting previously deselected package libmagic1.
-Unpacking libmagic1 (from .../libmagic1_5.04-5_alpha.deb) ...
-Selecting previously deselected package file.
-Unpacking file (from .../archives/file_5.04-5_alpha.deb) ...
-Selecting previously deselected package gettext-base.
-Unpacking gettext-base (from .../gettext-base_0.18.1.1-3_alpha.deb) ...
-Selecting previously deselected package libpcre3.
-Unpacking libpcre3 (from .../libpcre3_8.12-3_alpha.deb) ...
-Selecting previously deselected package libxml2.
-Unpacking libxml2 (from .../libxml2_2.7.8.dfsg-2_alpha.deb) ...
-Selecting previously deselected package html2text.
-Unpacking html2text (from .../html2text_1.3.2a-15_alpha.deb) ...
-Selecting previously deselected package libglib2.0-0.
-Unpacking libglib2.0-0 (from .../libglib2.0-0_2.28.2-1_alpha.deb) ...
-Selecting previously deselected package libcroco3.
-Unpacking libcroco3 (from .../libcroco3_0.6.2-1_alpha.deb) ...
-Selecting previously deselected package libunistring0.
-Unpacking libunistring0 (from .../libunistring0_0.9.3-3_alpha.deb) ...
-Selecting previously deselected package gettext.
-Unpacking gettext (from .../gettext_0.18.1.1-3_alpha.deb) ...
-Selecting previously deselected package intltool-debian.
-Unpacking intltool-debian (from .../intltool-debian_0.35.0+20060710.1_alpha.deb) ...
-Selecting previously deselected package po-debconf.
-Unpacking po-debconf (from .../po-debconf_1.0.16+nmu1_alpha.deb) ...
-Selecting previously deselected package debhelper.
-Unpacking debhelper (from .../debhelper_8.1.2_alpha.deb) ...
-Selecting previously deselected package cdbs.
-Unpacking cdbs (from .../archives/cdbs_0.4.92_alpha.deb) ...
-Selecting previously deselected package zlib1g-dev.
-Unpacking zlib1g-dev (from .../zlib1g-dev_1%3a1.2.3.4.dfsg-3_alpha.deb) ...
-Setting up bsdmainutils (8.2.2) ...
-update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode.
-update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode.
-Setting up groff-base (1.21-4) ...
-Setting up libpipeline1 (1.1.0-1) ...
-Setting up man-db (2.5.9-4) ...
-Building database of manual pages ...
-Setting up libmagic1 (5.04-5) ...
-Setting up file (5.04-5) ...
-Setting up gettext-base (0.18.1.1-3) ...
-Setting up libpcre3 (8.12-3) ...
-Setting up libxml2 (2.7.8.dfsg-2) ...
-Setting up html2text (1.3.2a-15) ...
-Setting up libglib2.0-0 (2.28.2-1) ...
-No schema files found: doing nothing.
-Setting up libcroco3 (0.6.2-1) ...
-Setting up libunistring0 (0.9.3-3) ...
-Setting up gettext (0.18.1.1-3) ...
-Setting up intltool-debian (0.35.0+20060710.1) ...
-Setting up po-debconf (1.0.16+nmu1) ...
-Setting up debhelper (8.1.2) ...
-Setting up cdbs (0.4.92) ...
-Setting up zlib1g-dev (1:1.2.3.4.dfsg-3) ...
-Removing negative dependencies:
-Checking correctness of source dependencies...
-Kernel: Linux 2.6.32-bpo.5-alpha-generic alpha (alpha)
-Toolchain package versions: libc6.1-dev_2.11.2-13 dpkg-dev_1.15.8.10 linux-libc-dev_2.6.37-2 gcc-4.4_4.4.5-14 g++-4.4_4.4.5-14 binutils_2.21.0.20110302-2 libstdc++6-4.4-dev_4.4.5-14 libstdc++6_4.5.2-6
-Package versions: apt_0.8.12 base-files_6.1 base-passwd_3.5.22 bash_4.1-3 binutils_2.21.0.20110302-2 bsdmainutils_8.2.2 bsdutils_1:2.17.2-9.1 build-essential_11.5 bzip2_1.0.5-6 cdbs_0.4.92 coreutils_8.5-1 cpp_4:4.4.5-4 cpp-4.4_4.4.5-14 dash_0.5.5.1-7.4 debconf_1.5.38 debconf-i18n_1.5.38 debfoster_2.7-1.1 debhelper_8.1.2 debian-archive-keyring_2010.08.28 debianutils_3.4.4 diffutils_1:3.0-1 dpkg_1.15.8.10 dpkg-dev_1.15.8.10 e2fslibs_1.41.12-2 e2fsprogs_1.41.12-2 fakeroot_1.14.5-2 file_5.04-5 findutils_4.4.2-1+b1 g++_4:4.4.5-4 g++-4.4_4.4.5-14 gcc_4:4.4.5-4 gcc-4.4_4.4.5-14 gcc-4.4-base_4.4.5-14 gcc-4.5-base_4.5.2-6 gettext_0.18.1.1-3 gettext-base_0.18.1.1-3 gnupg_1.4.11-3 gpgv_1.4.11-3 grep_2.6.3-3 groff-base_1.21-4 gzip_1.3.12-9 hostname_3.06 html2text_1.3.2a-15 initscripts_2.88dsf-13.1 insserv_1.14.0-2 intltool-debian_0.35.0+20060710.1 libacl1_2.2.49-4 libattr1_1:2.4.44-2 libblkid1_2.17.2-9.1 libbz2-1.0_1.0.5-6 libc-bin_2.11.2-13 libc-dev-bin_2.11.2-13 libc6.1_2.11.2-13 libc6.1-dev_2.11.2-13 libcomerr2_1.41.12-2 libcroco3_0.6.2-1 libdb4.7_4.7.25-12 libdb4.8_4.8.30-5 libdpkg-perl_1.15.8.10 libgc1c2_1:7.1-7 libgcc1_1:4.5.2-6 libgdbm3_1.8.3-9 libglib2.0-0_2.28.2-1 libgmp10_2:5.0.1+dfsg-6 libgomp1_4.5.2-6 liblocale-gettext-perl_1.05-6 liblzma2_5.0.0-2 libmagic1_5.04-5 libmpfr4_3.0.0-9 libncurses5_5.8+20110307-1 libpam-modules_1.1.2-2 libpam-runtime_1.1.2-2 libpam0g_1.1.2-2 libpcre3_8.12-3 libpipeline1_1.1.0-1 libreadline6_6.1-3 libselinux1_2.0.96-1 libsepol1_2.0.42-1 libslang2_2.2.2-4 libss2_1.41.12-2 libstdc++6_4.5.2-6 libstdc++6-4.4-dev_4.4.5-14 libtext-charwidth-perl_0.04-6 libtext-iconv-perl_1.7-2 libtext-wrapi18n-perl_0.06-7 libtimedate-perl_1.2000-1 libunistring0_0.9.3-3 libusb-0.1-4_2:0.1.12-17 libuuid1_2.17.2-9.1 libxml2_2.7.8.dfsg-2 linux-libc-dev_2.6.37-2 login_1:4.1.4.2+svn3283-3 lsb-base_3.2-27 make_3.81-8 man-db_2.5.9-4 mawk_1.3.3-15 mount_2.17.2-9.1 ncurses-base_5.8+20110307-1 ncurses-bin_5.8+20110307-1 netbase_4.45 passwd_1:4.1.4.2+svn3283-3 patch_2.6.1-1 perl_5.10.1-17 perl-base_5.10.1-17 perl-modules_5.10.1-17 po-debconf_1.0.16+nmu1 readline-common_6.1-3 sed_4.2.1-9 sensible-utils_0.0.6 sudo_1.7.4p6-1 sysv-rc_2.88dsf-13.1 sysvinit_2.88dsf-13.1 sysvinit-utils_2.88dsf-13.1 tar_1.25-3 tzdata_2011d-1 util-linux_2.17.2-9.1 vim-common_2:7.3.035+hg~8fdc12103333-1 vim-tiny_2:7.3.035+hg~8fdc12103333-1 xz-utils_5.0.0-2 zlib1g_1:1.2.3.4.dfsg-3 zlib1g-dev_1:1.2.3.4.dfsg-3
-
-┌──────────────────────────────────────────────────────────────────────────────┐
-│ Build │
-└──────────────────────────────────────────────────────────────────────────────┘
-
-
-Unpack source
-─────────────
-
-dpkg-source: warning: -sn is not a valid option for Dpkg::Source::Package::V3::quilt
-gpgv: keyblock resource `/home/buildd/.gnupg/trustedkeys.gpg': file open error
-gpgv: Signature made Wed Jan 19 13:19:58 2011 UTC using RSA key ID 2295D502
-gpgv: Can't check signature: public key not found
-dpkg-source: warning: failed to verify signature on ./tabix_0.2.3-1.dsc
-dpkg-source: info: extracting tabix in tabix-0.2.3
-dpkg-source: info: unpacking tabix_0.2.3.orig.tar.bz2
-dpkg-source: info: unpacking tabix_0.2.3-1.debian.tar.gz
-
-Check disc space
-────────────────
-
-
-dpkg-buildpackage
-─────────────────
-
-dpkg-buildpackage: export CFLAGS from dpkg-buildflags (origin: vendor): -g -O2
-dpkg-buildpackage: export CPPFLAGS from dpkg-buildflags (origin: vendor):
-dpkg-buildpackage: export CXXFLAGS from dpkg-buildflags (origin: vendor): -g -O2
-dpkg-buildpackage: export FFLAGS from dpkg-buildflags (origin: vendor): -g -O2
-dpkg-buildpackage: export LDFLAGS from dpkg-buildflags (origin: vendor):
-dpkg-buildpackage: source package tabix
-dpkg-buildpackage: source version 0.2.3-1
- dpkg-source --before-build tabix-0.2.3
-dpkg-buildpackage: host architecture alpha
- /usr/bin/fakeroot debian/rules clean
-test -x debian/rules
-dh_testroot
-rm -f debian/stamp-makefile-build debian/stamp-makefile-install
-/usr/bin/make -C . CFLAGS="-g -O2 -g -O2" CXXFLAGS="-g -O2 -g -O2" CPPFLAGS="" LDFLAGS="" -k clean
-make[1]: Entering directory `/build/buildd-tabix_0.2.3-1-alpha-SAqcrf/tabix-0.2.3'
-make[2]: Entering directory `/build/buildd-tabix_0.2.3-1-alpha-SAqcrf/tabix-0.2.3'
-rm -fr gmon.out *.o a.out *.dSYM tabix bgzip *~ *.a tabix.aux tabix.log tabix.pdf *.class libtabix.*.dylib libtabix.so*
-make[2]: Leaving directory `/build/buildd-tabix_0.2.3-1-alpha-SAqcrf/tabix-0.2.3'
-make[1]: Leaving directory `/build/buildd-tabix_0.2.3-1-alpha-SAqcrf/tabix-0.2.3'
-dh_clean
- debian/rules build
-test -x debian/rules
-mkdir -p "."
-/usr/share/cdbs/1/rules/buildcore.mk:109: WARNING: DEB_COMPRESS_EXCLUDE is a deprecated variable
-/usr/bin/make -C . CFLAGS="-g -O2 -g -O2" CXXFLAGS="-g -O2 -g -O2" CPPFLAGS="" LDFLAGS=""
-make[1]: Entering directory `/build/buildd-tabix_0.2.3-1-alpha-SAqcrf/tabix-0.2.3'
-make[2]: Entering directory `/build/buildd-tabix_0.2.3-1-alpha-SAqcrf/tabix-0.2.3'
-gcc -c -g -O2 -g -O2 -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE bgzf.c -o bgzf.o
-gcc -c -g -O2 -g -O2 -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE kstring.c -o kstring.o
-gcc -c -g -O2 -g -O2 -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE knetfile.c -o knetfile.o
-gcc -c -g -O2 -g -O2 -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE index.c -o index.o
-ar -cru libtabix.a bgzf.o kstring.o knetfile.o index.o
-gcc -c -g -O2 -g -O2 -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE main.c -o main.o
-gcc -g -O2 -g -O2 -o tabix main.o -lm -lz -L. -ltabix
-gcc -c -g -O2 -g -O2 -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE bgzip.c -o bgzip.o
-gcc -g -O2 -g -O2 -o bgzip bgzip.o bgzf.o knetfile.o -lz
-make[2]: Leaving directory `/build/buildd-tabix_0.2.3-1-alpha-SAqcrf/tabix-0.2.3'
-make[1]: Leaving directory `/build/buildd-tabix_0.2.3-1-alpha-SAqcrf/tabix-0.2.3'
-touch debian/stamp-makefile-build
-DEB_MAKE_CHECK_TARGET unset, not running checks
- /usr/bin/fakeroot debian/rules binary-arch
-test -x debian/rules
-dh_testroot
-dh_prep
-dh_installdirs -A
-mkdir -p "."
-/usr/share/cdbs/1/rules/buildcore.mk:109: WARNING: DEB_COMPRESS_EXCLUDE is a deprecated variable
-DEB_MAKE_CHECK_TARGET unset, not running checks
-DEB_MAKE_INSTALL_TARGET unset, skipping default makefile.mk common-install target
-Adding cdbs dependencies to debian/tabix.substvars
-dh_installdirs -ptabix
-dh_installdocs -ptabix ./NEWS
-dh_installexamples -ptabix
-dh_installman -ptabix
-dh_installinfo -ptabix
-dh_installmenu -ptabix
-dh_installcron -ptabix
-dh_installinit -ptabix
-dh_installdebconf -ptabix
-dh_installemacsen -ptabix
-dh_installcatalogs -ptabix
-dh_installpam -ptabix
-dh_installlogrotate -ptabix
-dh_installlogcheck -ptabix
-dh_installchangelogs -ptabix ./ChangeLog
-dh_installudev -ptabix
-dh_lintian -ptabix
-dh_bugfiles -ptabix
-dh_install -ptabix
-dh_link -ptabix
-dh_installmime -ptabix
-dh_strip -ptabix
-dh_compress -ptabix -X .tbi
-dh_fixperms -ptabix
-dh_makeshlibs -ptabix
-dh_installdeb -ptabix
-dh_perl -ptabix
-dh_shlibdeps -ptabix
-dpkg-shlibdeps: warning: dependency on libm.so.6.1 could be avoided if "debian/tabix/usr/bin/tabix" were not uselessly linked against it (they use none of its symbols).
-dh_gencontrol -ptabix
-dh_md5sums -ptabix
-dh_builddeb -ptabix
-dpkg-deb: building package `tabix' in `../tabix_0.2.3-1_alpha.deb'.
- dpkg-genchanges -B -malpha Build Daemon (goetz) <buildd_alpha-goetz at buildd.debian.org> >../tabix_0.2.3-1_alpha.changes
-dpkg-genchanges: arch-specific upload - not including arch-independent packages
-dpkg-genchanges: binary-only upload - not including any source code
- dpkg-source --after-build tabix-0.2.3
-dpkg-buildpackage: binary only upload (no source included)
-────────────────────────────────────────────────────────────────────────────────
-Build finished at 20110317-0853
-
-tabix_0.2.3-1_alpha.changes:
-Format: 1.8
-Date: Wed, 19 Jan 2011 22:16:39 +0900
-Source: tabix
-Binary: tabix
-Architecture: alpha
-Version: 0.2.3-1
-Distribution: sid
-Urgency: low
-Maintainer: alpha Build Daemon (goetz) <buildd_alpha-goetz at buildd.debian.org>
-Changed-By: Charles Plessy <plessy at debian.org>
-Description:
- tabix - generic indexer for TAB-delimited genome position files
-Closes: 606446
-Changes:
- tabix (0.2.3-1) unstable; urgency=low
- .
- * Initial release (Closes: #606446)
-Checksums-Sha1:
- f54137e9e1fe500f46b2b2f50c487b0af870f2fd 60778 tabix_0.2.3-1_alpha.deb
-Checksums-Sha256:
- 2353e5c1a4217eeb6f06246236ce3125a67d8cca8b028e60f1159d6b38f5f87e 60778 tabix_0.2.3-1_alpha.deb
-Files:
- dbc0c16a0efbf43a7cbfdafa0a818ec3 60778 science optional tabix_0.2.3-1_alpha.deb
-
-┌──────────────────────────────────────────────────────────────────────────────┐
-│ Package contents │
-└──────────────────────────────────────────────────────────────────────────────┘
-
-
-tabix_0.2.3-1_alpha.deb
-───────────────────────
-
- new debian package, version 2.0.
- size 60778 bytes: control archive= 957 bytes.
- 780 bytes, 16 lines control
- 587 bytes, 9 lines md5sums
- Package: tabix
- Version: 0.2.3-1
- Architecture: alpha
- Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
- Installed-Size: 176
- Depends: libc6.1 (>= 2.7), zlib1g (>= 1:1.1.4)
- Section: science
- Priority: optional
- Homepage: http://samtools.sourceforge.net/tabix.shtml
- Description: generic indexer for TAB-delimited genome position files
- Tabix indexes files where some columns indicate sequence coordinates: name
- (usually a chromosme), start and stop. The input data file must be position
- sorted and compressed by bgzip (provided in this package), which has a gzip
- like interface. After indexing, tabix is able to quickly retrieve data lines by
- chromosomal coordinates. Fast data retrieval also works over network if an URI
- is given as a file name.
-
-drwxr-xr-x root/root 0 2011-03-17 08:53 ./
-drwxr-xr-x root/root 0 2011-03-17 08:53 ./usr/
-drwxr-xr-x root/root 0 2011-03-17 08:53 ./usr/bin/
--rwxr-xr-x root/root 70320 2011-03-17 08:53 ./usr/bin/tabix
--rwxr-xr-x root/root 32760 2011-03-17 08:53 ./usr/bin/bgzip
-drwxr-xr-x root/root 0 2011-03-17 08:53 ./usr/share/
-drwxr-xr-x root/root 0 2011-03-17 08:53 ./usr/share/doc/
-drwxr-xr-x root/root 0 2011-03-17 08:53 ./usr/share/doc/tabix/
--rw-r--r-- root/root 154 2011-01-19 13:16 ./usr/share/doc/tabix/changelog.Debian.gz
--rw-r--r-- root/root 2920 2010-12-08 17:38 ./usr/share/doc/tabix/changelog.gz
--rw-r--r-- root/root 944 2010-12-08 17:38 ./usr/share/doc/tabix/NEWS.gz
--rw-r--r-- root/root 1346 2011-01-19 13:03 ./usr/share/doc/tabix/copyright
-drwxr-xr-x root/root 0 2011-03-17 08:53 ./usr/share/doc/tabix/examples/
--rw-r--r-- root/root 3778 2010-12-08 17:34 ./usr/share/doc/tabix/examples/example.gtf.gz
--rw-r--r-- root/root 260 2010-12-08 17:34 ./usr/share/doc/tabix/examples/example.gtf.gz.tbi
-drwxr-xr-x root/root 0 2011-03-17 08:53 ./usr/share/man/
-drwxr-xr-x root/root 0 2011-03-17 08:53 ./usr/share/man/man1/
--rw-r--r-- root/root 1716 2011-03-17 08:53 ./usr/share/man/man1/tabix.1.gz
-lrwxrwxrwx root/root 0 2011-03-17 08:53 ./usr/share/man/man1/bgzip.1.gz -> tabix.1.gz
-
-
-┌──────────────────────────────────────────────────────────────────────────────┐
-│ Finished │
-└──────────────────────────────────────────────────────────────────────────────┘
-
-Built successfully
-────────────────────────────────────────────────────────────────────────────────
-Purging /var/lib/schroot/mount/sid-alpha-sbuild-7ddb5b31-a382-46bb-9bad-933f2df2a3be/build/buildd-tabix_0.2.3-1-alpha-SAqcrf
-Not removing build depends: cloned chroot in use
-────────────────────────────────────────────────────────────────────────────────
-Finished at 20110317-0853
-Build needed 00:02:16, 1588k disc space
-
diff --git a/armel.log b/armel.log
index b5a1b5f..7028c90 100644
--- a/armel.log
+++ b/armel.log
@@ -1,68 +1,67 @@
-From buildd at arnold.debian.org Wed Mar 16 15:03:06 2011
-Return-path: <buildd at arnold.debian.org>
-Received: from kokkonen.debian.org ([2001:41b8:202:deb:216:35ff:fec4:6340])
+From buildd at ancina.debian.org Tue Apr 12 10:25:48 2011
+Return-path: <buildd at ancina.debian.org>
+Received: from merikanto.debian.org ([2001:858:2:2:216:35ff:fec4:a49a])
from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
- CN=kokkonen.debian.org,
- EMAIL=hostmaster at kokkonen.debian.org (verified)
+ CN=merikanto.debian.org,
+ EMAIL=hostmaster at merikanto.debian.org (verified)
by grieg.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
- (Exim 4.69) (envelope-from <buildd at arnold.debian.org>)
- id 1PzsFe-0001uj-4M
- for logs at buildd.debian.org; Wed, 16 Mar 2011 15:03:06 +0000
-Received: from arnold.islands.arm.com ([217.140.96.57] helo=arnold.debian.org)
+ (Exim 4.69) (envelope-from <buildd at ancina.debian.org>)
+ id 1Q9an6-0002Zc-0J
+ for logs at buildd.debian.org; Tue, 12 Apr 2011 10:25:48 +0000
+Received: from ancina.ugent.be ([157.193.39.13] helo=ancina.debian.org)
from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
- CN=arnold.debian.org, EMAIL=hostmaster at arnold.debian.org (verified)
- by kokkonen.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
- (Exim 4.69) (envelope-from <buildd at arnold.debian.org>)
- id 1PzsFc-0006yP-03
- for logs at buildd.debian.org; Wed, 16 Mar 2011 15:03:04 +0000
-Received: from buildd by arnold.debian.org with local (Exim 4.69)
- (envelope-from <buildd at arnold.debian.org>)
- id 1PzsFZ-0005Bi-EJ; Wed, 16 Mar 2011 15:03:01 +0000
-From: buildd on arnold <buildd at arnold.debian.org>
-To: buildd-porters at arnold.debian.org,logs at buildd.debian.org
-Subject: Log for successful build of tabix_0.2.3-1 on armel (dist=sid)
-Content-Type: text/plain; charset=UTF-8
-Content-Transfer-Encoding: 8bit
-Message-Id: <E1PzsFZ-0005Bi-EJ at arnold.debian.org>
-Date: Wed, 16 Mar 2011 15:03:01 +0000
+ CN=ancina.debian.org, EMAIL=hostmaster at ancina.debian.org (verified)
+ by merikanto.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
+ (Exim 4.72) (envelope-from <buildd at ancina.debian.org>)
+ id 1Q9amu-000403-Fp
+ for logs at buildd.debian.org; Tue, 12 Apr 2011 10:25:36 +0000
+Received: from buildd by ancina.debian.org with local (Exim 4.69)
+ (envelope-from <buildd at ancina.debian.org>)
+ id 1Q9amo-0007xQ-LG; Tue, 12 Apr 2011 10:25:30 +0000
+MIME-Version: 1.0
+Content-Transfer-Encoding: binary
+X-Mailer: MIME::Lite 3.021 (F2.76; B3.07_01; Q3.07)
+Date: Tue, 12 Apr 2011 10:25:30 +0000
+From: Build Daemon <buildd at ancina.debian.org>
+To: buildd-porters at ancina.debian.org,logs at buildd.debian.org
+Subject: Log for successful build of tabix_0.2.4-1 on armel (dist=sid)
+Key-Id: A1EAA0BB
+Message-Id: <E1Q9amo-0007xQ-LG at ancina.debian.org>
Delivered-To: logs at buildd.debian.org
-sbuild (Debian sbuild) 0.60.5 (14 Nov 2010) on arnold.debian.org
+sbuild (Debian sbuild) 0.61.0 (23 Feb 2011) on ancina.debian.org
╔══════════════════════════════════════════════════════════════════════════════╗
-║ tabix 0.2.3-1 (armel) 16 Mar 2011 14:59 ║
+║ tabix 0.2.4-1 (armel) 12 Apr 2011 10:23 ║
╚══════════════════════════════════════════════════════════════════════════════╝
Package: tabix
-Version: 0.2.3-1
+Version: 0.2.4-1
+Source Version: 0.2.4-1
Architecture: armel
-Chroot Build Dir: /var/lib/schroot/mount/sid-armel-sbuild-d118f697-7214-4092-bb44-a5286c819e81/build/buildd-tabix_0.2.3-1-armel-8kAbIf
-Start Time: 20110316-1459
-Get:1 http://ftp.uk.debian.org unstable InRelease [147 kB]
-Get:2 http://ftp.uk.debian.org unstable/main Sources [4205 kB]
-Get:3 http://incoming.debian.org unstable InRelease [147 kB]
+Hit http://ftp.de.debian.org sid InRelease
+Hit http://incoming.debian.org sid InRelease
Ign http://incoming.debian.org InRelease
-Get:4 http://incoming.debian.org Release.gpg [835 B]
-Get:5 http://incoming.debian.org unstable/main Sources [4211 kB]
-Get:6 http://ftp.uk.debian.org unstable/contrib Sources [38.8 kB]
-Get:7 http://ftp.uk.debian.org unstable/non-free Sources [81.3 kB]
-Get:8 http://ftp.uk.debian.org unstable/main armel Packages [6850 kB]
-Get:9 http://ftp.uk.debian.org unstable/contrib armel Packages [51.1 kB]
-Ign http://ftp.uk.debian.org unstable/contrib TranslationIndex
-Get:10 http://ftp.uk.debian.org unstable/main TranslationIndex [2232 B]
-Ign http://ftp.uk.debian.org unstable/contrib Translation-en
-Get:11 http://incoming.debian.org unstable/contrib Sources [38.8 kB]
-Get:12 http://incoming.debian.org unstable/non-free Sources [81.3 kB]
-Get:13 http://incoming.debian.org unstable/main armel Packages [6856 kB]
-Get:14 http://incoming.debian.org unstable/contrib armel Packages [51.1 kB]
-Ign http://incoming.debian.org unstable/contrib TranslationIndex
-Get:15 http://incoming.debian.org unstable/main TranslationIndex [2232 B]
-Get:16 http://incoming.debian.org Release [1604 B]
-Get:17 http://incoming.debian.org Sources [34.3 kB]
-Get:18 http://incoming.debian.org Packages [470 kB]
-Ign http://incoming.debian.org unstable/contrib Translation-en
+Hit http://ftp.de.debian.org sid/main Sources/DiffIndex
+Get:1 http://incoming.debian.org Release.gpg [836 B]
+Hit http://ftp.de.debian.org sid/contrib Sources/DiffIndex
+Hit http://ftp.de.debian.org sid/main armel Packages/DiffIndex
+Hit http://ftp.de.debian.org sid/contrib armel Packages/DiffIndex
+Ign http://ftp.de.debian.org sid/contrib TranslationIndex
+Hit http://ftp.de.debian.org sid/main TranslationIndex
+Hit http://incoming.debian.org sid/main Sources/DiffIndex
+Hit http://incoming.debian.org sid/contrib Sources/DiffIndex
+Hit http://incoming.debian.org sid/main armel Packages/DiffIndex
+Hit http://incoming.debian.org sid/contrib armel Packages/DiffIndex
+Ign http://incoming.debian.org sid/contrib TranslationIndex
+Hit http://incoming.debian.org sid/main TranslationIndex
+Ign http://ftp.de.debian.org sid/contrib Translation-en
+Get:2 http://incoming.debian.org Release [1604 B]
+Get:3 http://incoming.debian.org Sources [49.1 kB]
+Get:4 http://incoming.debian.org Packages [777 kB]
+Ign http://incoming.debian.org sid/contrib Translation-en
Ign http://incoming.debian.org Translation-en
-Fetched 23.3 MB in 53s (439 kB/s)
+Fetched 828 kB in 12s (64.9 kB/s)
Reading package lists...
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -83,94 +82,118 @@ Building dependency tree...
Reading state information...
NOTICE: 'tabix' packaging is maintained in the 'Git' version control system at:
git://git.debian.org/debian-med/tabix.git
-Need to get 50.4 kB of source archives.
-Get:1 http://incoming.debian.org/debian/ unstable/main tabix 0.2.3-1 (dsc) [1882 B]
-Get:2 http://incoming.debian.org/debian/ unstable/main tabix 0.2.3-1 (tar) [46.4 kB]
-Get:3 http://incoming.debian.org/debian/ unstable/main tabix 0.2.3-1 (diff) [2130 B]
-Fetched 50.4 kB in 0s (92.4 kB/s)
+Need to get 58.4 kB of source archives.
+Get:1 http://incoming.debian.org/buildd-unstable/ tabix 0.2.4-1 (dsc) [1882 B]
+Get:2 http://incoming.debian.org/buildd-unstable/ tabix 0.2.4-1 (tar) [54.2 kB]
+Get:3 http://incoming.debian.org/buildd-unstable/ tabix 0.2.4-1 (diff) [2322 B]
+Fetched 58.4 kB in 0s (95.0 kB/s)
Download complete and in download only mode
Check arch
──────────
-** Using build dependencies supplied by package:
-Build-Depends: cdbs, debhelper (>= 8), zlib1g-dev
┌──────────────────────────────────────────────────────────────────────────────┐
-│ Install build dependencies (internal resolver) │
+│ Install core build dependencies (internal resolver) │
└──────────────────────────────────────────────────────────────────────────────┘
-Checking for already installed source dependencies...
+Build-Depends: build-essential, fakeroot
+Checking for already installed dependencies...
+build-essential: already installed (11.5)
+fakeroot: already installed (1.15.1-1)
+Checking for dependency conflicts...
+Installing positive dependencies:
+Reading package lists...
+Building dependency tree...
+Reading state information...
+0 upgraded, 0 newly installed, 0 to remove and 11 not upgraded.
+Removing negative dependencies:
+Reading package lists...
+Building dependency tree...
+Reading state information...
+0 upgraded, 0 newly installed, 0 to remove and 11 not upgraded.
+Checking correctness of dependencies...
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Install tabix build dependencies (internal resolver) │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+Build-Depends: base-files, base-passwd, bash, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, ncurses-base, ncurses-bin, perl-base, sed, login, sysvinit-utils, sysvinit, tar, bsdutils, mount, util-linux, libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), cdbs, debhelper (>= 8), zlib1g-dev
+Checking for already installed dependencies...
+base-files: already installed (6.1)
+base-passwd: already installed (3.5.22)
+bash: already installed (4.1-3)
+coreutils: already installed (8.5-1)
+dash: already installed (0.5.5.1-7.4)
+debianutils: already installed (3.4.4)
+diffutils: already installed (1:3.0-1)
+dpkg: already installed (1.16.0)
+e2fsprogs: already installed (1.41.12-2)
+findutils: already installed (4.4.2-1+b1)
+grep: already installed (2.6.3-3)
+gzip: already installed (1.3.12-9)
+hostname: already installed (3.06)
+ncurses-base: already installed (5.8+20110307-1)
+ncurses-bin: already installed (5.9-1)
+perl-base: already installed (5.10.1-19)
+sed: already installed (4.2.1-9)
+login: already installed (1:4.1.4.2+svn3283-3)
+sysvinit-utils: already installed (2.88dsf-13.1)
+sysvinit: already installed (2.88dsf-13.1)
+tar: already installed (1.25-3)
+bsdutils: already installed (1:2.17.2-9.1)
+mount: already installed (2.17.2-9.1)
+util-linux: already installed (2.17.2-9.1)
+libc6-dev: already installed (2.11.2-13)
+gcc: already installed (4:4.5.2-5 >= 4:4.4.3 is satisfied)
+g++: already installed (4:4.5.2-5 >= 4:4.4.3 is satisfied)
+make: already installed (3.81-8)
+dpkg-dev: already installed (1.16.0 >= 1.13.5 is satisfied)
cdbs: missing
debhelper: missing
-Using default version 8.1.2
+Using default version 8.1.3
zlib1g-dev: missing
-Checking for source dependency conflicts...
+Checking for dependency conflicts...
Installing positive dependencies: cdbs debhelper zlib1g-dev
Reading package lists...
Building dependency tree...
Reading state information...
The following extra packages will be installed:
- bsdmainutils file gettext gettext-base groff-base html2text intltool-debian
- libcroco3 libglib2.0-0 libmagic1 libpcre3 libpipeline1 libunistring0 libxml2
- man-db po-debconf
+ file gettext gettext-base groff-base html2text intltool-debian libcroco3
+ libglib2.0-0 libmagic1 libpipeline1 libunistring0 libxml2 man-db po-debconf
Suggested packages:
- wamerican wordlist whois vacation devscripts doc-base dh-make gettext-doc
- groff less www-browser libmail-box-perl
+ devscripts doc-base dh-make gettext-doc groff less www-browser
+ libmail-box-perl
Recommended packages:
- autotools-dev curl wget lynx-cur autopoint libglib2.0-data shared-mime-info
- xml-core libmail-sendmail-perl
+ autotools-dev autopoint libglib2.0-data shared-mime-info xml-core
+ libmail-sendmail-perl
The following NEW packages will be installed:
- bsdmainutils cdbs debhelper file gettext gettext-base groff-base html2text
- intltool-debian libcroco3 libglib2.0-0 libmagic1 libpcre3 libpipeline1
- libunistring0 libxml2 man-db po-debconf zlib1g-dev
-0 upgraded, 19 newly installed, 0 to remove and 25 not upgraded.
-Need to get 10.2 MB of archives.
-After this operation, 28.4 MB of additional disk space will be used.
-Get:1 http://ftp.uk.debian.org/debian/ unstable/main bsdmainutils armel 8.2.2 [205 kB]
-Get:2 http://ftp.uk.debian.org/debian/ unstable/main groff-base armel 1.21-4 [1082 kB]
-Get:3 http://ftp.uk.debian.org/debian/ unstable/main libpipeline1 armel 1.1.0-1 [33.7 kB]
-Get:4 http://ftp.uk.debian.org/debian/ unstable/main man-db armel 2.5.9-4 [976 kB]
-Get:5 http://ftp.uk.debian.org/debian/ unstable/main libmagic1 armel 5.04-5 [237 kB]
-Get:6 http://ftp.uk.debian.org/debian/ unstable/main file armel 5.04-5 [49.4 kB]
-Get:7 http://ftp.uk.debian.org/debian/ unstable/main gettext-base armel 0.18.1.1-3 [129 kB]
-Get:8 http://ftp.uk.debian.org/debian/ unstable/main libpcre3 armel 8.12-3 [258 kB]
-Get:9 http://ftp.uk.debian.org/debian/ unstable/main libxml2 armel 2.7.8.dfsg-2 [816 kB]
-Get:10 http://ftp.uk.debian.org/debian/ unstable/main html2text armel 1.3.2a-15 [97.0 kB]
-Get:11 http://ftp.uk.debian.org/debian/ unstable/main libglib2.0-0 armel 2.28.2-1 [1527 kB]
-Get:12 http://ftp.uk.debian.org/debian/ unstable/main libcroco3 armel 0.6.2-1 [113 kB]
-Get:13 http://ftp.uk.debian.org/debian/ unstable/main libunistring0 armel 0.9.3-3 [410 kB]
-Get:14 http://ftp.uk.debian.org/debian/ unstable/main gettext armel 0.18.1.1-3 [1981 kB]
-Get:15 http://ftp.uk.debian.org/debian/ unstable/main intltool-debian all 0.35.0+20060710.1 [30.8 kB]
-Get:16 http://ftp.uk.debian.org/debian/ unstable/main po-debconf all 1.0.16+nmu1 [223 kB]
-Get:17 http://ftp.uk.debian.org/debian/ unstable/main debhelper all 8.1.2 [553 kB]
-Get:18 http://ftp.uk.debian.org/debian/ unstable/main cdbs all 0.4.92 [1268 kB]
-Get:19 http://ftp.uk.debian.org/debian/ unstable/main zlib1g-dev armel 1:1.2.3.4.dfsg-3 [190 kB]
+ cdbs debhelper file gettext gettext-base groff-base html2text
+ intltool-debian libcroco3 libglib2.0-0 libmagic1 libpipeline1 libunistring0
+ libxml2 man-db po-debconf zlib1g-dev
debconf: delaying package configuration, since apt-utils is not installed
-Fetched 10.2 MB in 3s (2676 kB/s)
-Selecting previously deselected package bsdmainutils.
-(Reading database ... 10175 files and directories currently installed.)
-Unpacking bsdmainutils (from .../bsdmainutils_8.2.2_armel.deb) ...
+0 upgraded, 17 newly installed, 0 to remove and 11 not upgraded.
+Need to get 0 B/9721 kB of archives.
+After this operation, 27.0 MB of additional disk space will be used.
Selecting previously deselected package groff-base.
-Unpacking groff-base (from .../groff-base_1.21-4_armel.deb) ...
+(Reading database ... 10830 files and directories currently installed.)
+Unpacking groff-base (from .../groff-base_1.21-5_armel.deb) ...
Selecting previously deselected package libpipeline1.
-Unpacking libpipeline1 (from .../libpipeline1_1.1.0-1_armel.deb) ...
+Unpacking libpipeline1 (from .../libpipeline1_1.2.0-1_armel.deb) ...
Selecting previously deselected package man-db.
-Unpacking man-db (from .../man-db_2.5.9-4_armel.deb) ...
+Unpacking man-db (from .../man-db_2.6.0.1-1_armel.deb) ...
Selecting previously deselected package libmagic1.
Unpacking libmagic1 (from .../libmagic1_5.04-5_armel.deb) ...
Selecting previously deselected package file.
Unpacking file (from .../archives/file_5.04-5_armel.deb) ...
Selecting previously deselected package gettext-base.
Unpacking gettext-base (from .../gettext-base_0.18.1.1-3_armel.deb) ...
-Selecting previously deselected package libpcre3.
-Unpacking libpcre3 (from .../libpcre3_8.12-3_armel.deb) ...
Selecting previously deselected package libxml2.
Unpacking libxml2 (from .../libxml2_2.7.8.dfsg-2_armel.deb) ...
Selecting previously deselected package html2text.
Unpacking html2text (from .../html2text_1.3.2a-15_armel.deb) ...
Selecting previously deselected package libglib2.0-0.
-Unpacking libglib2.0-0 (from .../libglib2.0-0_2.28.2-1_armel.deb) ...
+Unpacking libglib2.0-0 (from .../libglib2.0-0_2.28.4-1_armel.deb) ...
Selecting previously deselected package libcroco3.
Unpacking libcroco3 (from .../libcroco3_0.6.2-1_armel.deb) ...
Selecting previously deselected package libunistring0.
@@ -178,43 +201,43 @@ Unpacking libunistring0 (from .../libunistring0_0.9.3-3_armel.deb) ...
Selecting previously deselected package gettext.
Unpacking gettext (from .../gettext_0.18.1.1-3_armel.deb) ...
Selecting previously deselected package intltool-debian.
-Unpacking intltool-debian (from .../intltool-debian_0.35.0+20060710.1_all.deb) ...
+Unpacking intltool-debian (from .../intltool-debian_0.35.0+20060710.1_armel.deb) ...
Selecting previously deselected package po-debconf.
-Unpacking po-debconf (from .../po-debconf_1.0.16+nmu1_all.deb) ...
+Unpacking po-debconf (from .../po-debconf_1.0.16+nmu1_armel.deb) ...
Selecting previously deselected package debhelper.
-Unpacking debhelper (from .../debhelper_8.1.2_all.deb) ...
+Unpacking debhelper (from .../debhelper_8.1.3_armel.deb) ...
Selecting previously deselected package cdbs.
-Unpacking cdbs (from .../archives/cdbs_0.4.92_all.deb) ...
+Unpacking cdbs (from .../archives/cdbs_0.4.92_armel.deb) ...
Selecting previously deselected package zlib1g-dev.
Unpacking zlib1g-dev (from .../zlib1g-dev_1%3a1.2.3.4.dfsg-3_armel.deb) ...
-Setting up bsdmainutils (8.2.2) ...
-update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode.
-update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode.
-Setting up groff-base (1.21-4) ...
-Setting up libpipeline1 (1.1.0-1) ...
-Setting up man-db (2.5.9-4) ...
+Setting up groff-base (1.21-5) ...
+Setting up libpipeline1 (1.2.0-1) ...
+Setting up man-db (2.6.0.1-1) ...
Building database of manual pages ...
Setting up libmagic1 (5.04-5) ...
Setting up file (5.04-5) ...
Setting up gettext-base (0.18.1.1-3) ...
-Setting up libpcre3 (8.12-3) ...
Setting up libxml2 (2.7.8.dfsg-2) ...
Setting up html2text (1.3.2a-15) ...
-Setting up libglib2.0-0 (2.28.2-1) ...
+Setting up libglib2.0-0 (2.28.4-1) ...
No schema files found: doing nothing.
Setting up libcroco3 (0.6.2-1) ...
Setting up libunistring0 (0.9.3-3) ...
Setting up gettext (0.18.1.1-3) ...
Setting up intltool-debian (0.35.0+20060710.1) ...
Setting up po-debconf (1.0.16+nmu1) ...
-Setting up debhelper (8.1.2) ...
+Setting up debhelper (8.1.3) ...
Setting up cdbs (0.4.92) ...
Setting up zlib1g-dev (1:1.2.3.4.dfsg-3) ...
Removing negative dependencies:
-Checking correctness of source dependencies...
-Kernel: Linux 2.6.32 armel (armv5tel)
-Toolchain package versions: libc6-dev_2.11.2-13 dpkg-dev_1.15.8.10 linux-libc-dev_2.6.37-2 gcc-4.5_4.5.2-4 g++-4.5_4.5.2-4 binutils_2.21.0.20110302-1 libstdc++6-4.5-dev_4.5.2-4 libstdc++6_4.5.2-4
-Package versions: apt_0.8.11.5 base-files_6.1 base-passwd_3.5.22 bash_4.1-3 binutils_2.21.0.20110302-1 bsdmainutils_8.2.2 bsdutils_1:2.17.2-9.1 build-essential_11.5 bzip2_1.0.5-6 cdbs_0.4.92 coreutils_8.5-1 cpp_4:4.5.2-1 cpp-4.5_4.5.2-4 dash_0.5.5.1-7.4 debconf_1.5.38 debconf-i18n_1.5.38 debfoster_2.7-1.1 debhelper_8.1.2 debian-archive-keyring_2010.08.28 debianutils_3.4.4 diffutils_1:3.0-1 dpkg_1.15.8.10 dpkg-dev_1.15.8.10 e2fslibs_1.41.12-2 e2fsprogs_1.41.12-2 fakeroot_1.14.5-2 file_5.04-5 findutils_4.4.2-1+b1 g++_4:4.5.2-1 g++-4.5_4.5.2-4 gcc_4:4.5.2-1 gcc-4.4-base_4.4.5-13 gcc-4.5_4.5.2-4 gcc-4.5-base_4.5.2-4 gettext_0.18.1.1-3 gettext-base_0.18.1.1-3 gnupg_1.4.11-3 gpgv_1.4.11-3 grep_2.6.3-3 groff-base_1.21-4 gzip_1.3.12-9 hostname_3.05 html2text_1.3.2a-15 initscripts_2.88dsf-13.1 insserv_1.14.0-2 intltool-debian_0.35.0+20060710.1 libacl1_2.2.49-4 libattr1_1:2.4.44-2 libblkid1_2.17.2-9.1 libbz2-1.0_1.0.5-6 libc-bin_2.11.2-13 libc-dev-bin_2.11.2-13 libc6_2.11.2-13 libc6-dev_2.11.2-13 libcloog-ppl0_0.15.9-2 libcomerr2_1.41.12-2 libcroco3_0.6.2-1 libdb4.7_4.7.25-12 libdb4.8_4.8.30-5 libdpkg-perl_1.15.8.10 libelfg0_0.8.13-1 libgc1c2_1:7.1-7 libgcc1_1:4.5.2-4 libgdbm3_1.8.3-9 libglib2.0-0_2.28.2-1 libgmp10_2:5.0.1+dfsg-5 libgmp3c2_2:4.3.2+dfsg-1 libgmpxx4ldbl_2:5.0.1+dfsg-5 libgomp1_4.5.2-4 liblocale-gettext-perl_1.05-6 liblzma2_5.0.0-2 libmagic1_5.04-5 libmpc2_0.9-1 libmpfr4_3.0.0-7 libncurses5_5.8-1 libpam-modules_1.1.2-2 libpam-runtime_1.1.2-2 libpam0g_1.1.2-2 libpcre3_8.12-3 libpipeline1_1.1.0-1 libppl-c2_0.10.2-9 libppl7_0.10.2-9 libreadline6_6.1-3 libselinux1_2.0.96-1 libsepol1_2.0.42-1 libslang2_2.2.2-4 libss2_1.41.12-2 libstdc++6_4.5.2-4 libstdc++6-4.5-dev_4.5.2-4 libtext-charwidth-perl_0.04-6 libtext-iconv-perl_1.7-2 libtext-wrapi18n-perl_0.06-7 libtimedate-perl_1.2000-1 libunistring0_0.9.3-3 libusb-0.1-4_2:0.1.12-17 libuuid1_2.17.2-9.1 libxml2_2.7.8.dfsg-2 linux-libc-dev_2.6.37-2 login_1:4.1.4.2+svn3283-3 lsb-base_3.2-27 make_3.81-8 man-db_2.5.9-4 mawk_1.3.3-15 mount_2.17.2-9.1 ncurses-base_5.8-1 ncurses-bin_5.8-1 passwd_1:4.1.4.2+svn3283-3 patch_2.6.1-1 perl_5.10.1-17 perl-base_5.10.1-17 perl-modules_5.10.1-17 po-debconf_1.0.16+nmu1 readline-common_6.1-3 sed_4.2.1-9 sensible-utils_0.0.6 sudo_1.7.4p6-1 sysv-rc_2.88dsf-13.1 sysvinit_2.88dsf-13.1 sysvinit-utils_2.88dsf-13.1 tar_1.25-3 tzdata_2011b-2 util-linux_2.17.2-9.1 xz-utils_5.0.0-2 zlib1g_1:1.2.3.4.dfsg-3 zlib1g-dev_1:1.2.3.4.dfsg-3
+Reading package lists...
+Building dependency tree...
+Reading state information...
+0 upgraded, 0 newly installed, 0 to remove and 11 not upgraded.
+Checking correctness of dependencies...
+Kernel: Linux 2.6.31-rc9 armel (armv5tel)
+Toolchain package versions: binutils_2.21.0.20110327-2 dpkg-dev_1.16.0 g++-4.5_4.5.2-8 gcc-4.5_4.5.2-8 libc6-dev_2.11.2-13 libstdc++6_4.6.0-2 libstdc++6-4.5-dev_4.5.2-8 linux-libc-dev_2.6.38-1
+Package versions: apt_0.8.13 base-files_6.1 base-passwd_3.5.22 bash_4.1-3 binutils_2.21.0.20110327-2 bsdmainutils_8.2.2 bsdutils_1:2.17.2-9.1 build-essential_11.5 bzip2_1.0.5-6 cdbs_0.4.92 coreutils_8.5-1 cpio_2.11-7 cpp_4:4.5.2-5 cpp-4.5_4.5.2-8 dash_0.5.5.1-7.4 debconf_1.5.38 debconf-english_1.5.38 debfoster_2.7-1.1 debhelper_8.1.3 debian-archive-keyring_2010.08.28 debianutils_3.4.4 diffutils_1:3.0-1 dmsetup_2:1.02.63-3 dpkg_1.16.0 dpkg-dev_1.16.0 e2fslibs_1.41.12-2 e2fsprogs_1.41.12-2 fakeroot_1.15.1-1 file_5.04-5 findutils_4.4.2-1+b1 g++_4:4.5.2-5 g++-4.5_4.5.2-8 gawk_1:3.1.7.dfsg-5 gcc_4:4.5.2-5 gcc-4.2-base_4.2.4-6 gcc-4.4-base_4.4.5-15 gcc-4.5_4.5.2-8 gcc-4.5-base_4.5.2-8 gcc-4.6-base_4.6.0-2 gettext_0.18.1.1-3 gettext-base_0.18.1.1-3 gnupg_1.4.11-3 gpgv_1.4.11-3 grep_2.6.3-3 groff-base_1.21-5 gzip_1.3.12-9 hostname_3.06 html2text_1.3.2a-15 initscripts_2.88dsf-13.1 insserv_1.14.0-2.1 intltool-debian_0.35.0+20060710.1 libacl1_2.2.49-4 libattr1_1:2.4.44-2 libblkid1_2.17.2-9.1 libbz2-1.0_1.0.5-6 libc-bin_2.11.2-13 libc-dev-bin_2.11.2-13 libc6_2.11.2-13 libc6-dev_2.11.2-13 libcloog-ppl0_0.15.9-3 libcomerr2_1.41.12-2 libcroco3_0.6.2-1 libdb4.7_4.7.25-12 libdb4.8_4.8.30-5 libdevmapper1.02.1_2:1.02.63-3 libdpkg-perl_1.16.0 libelfg0_0.8.13-1 libgc1c2_1:7.1-7 libgcc1_1:4.6.0-2 libgcrypt11_1.4.6-5 libgdbm3_1.8.3-9 libglib2.0-0_2.28.4-1 libgmp10_2:5.0.1+dfsg-7 libgmpxx4ldbl_2:5.0.1+dfsg-7 libgnutls26_2.10.5-1+b1 libgomp1_4.6.0-2 libgpg-error0_1.10-0.3 libgpm2_1.20.4-3.3 libldap-2.4-2_2.4.25-1 liblocale-gettext-perl_1.05-6 liblzma2_5.0.0-2 libmagic1_5.04-5 libmpc2_0.9-2 libmpfr4_3.0.0-9 libncurses5_5.9-1 libncursesw5_5.9-1 libpam-modules_1.1.2-2 libpam-runtime_1.1.2-2 libpam0g_1.1.2-2 libpcre3_8.12-3 libpipeline1_1.2.0-1 libpng12-0_1.2.44-2 libppl-c4_0.11.2-3 libppl9_0.11.2-3 libpwl5_0.11.2-3 libreadline6_6.1-3 libsasl2-2_2.1.23.dfsg1-8 libselinux1_2.0.98-1 libsepol1_2.0.42-1 libslang2_2.2.3-3 libss2_1.41.12-2 libssl0.9.8_0.9.8o-6 libstdc++6_4.6.0-2 libstdc++6-4.5-dev_4.5.2-8 libtasn1-3_2.9-2 libtext-charwidth-perl_0.04-6 libtext-iconv-perl_1.7-2 libtext-wrapi18n-perl_0.06-7 libtimedate-perl_1.2000-1 libudev0_167-2 libunistring0_0.9.3-3 libusb-0.1-4_2:0.1.12-17 libuuid1_2.17.2-9.1 libvolume-id1_0.141-2 libxml2_2.7.8.dfsg-2 linux-libc-dev_2.6.38-1 login_1:4.1.4.2+svn3283-3 lsb-base_3.2-27 make_3.81-8 man-db_2.6.0.1-1 mawk_1.3.3-15 mount_2.17.2-9.1 ncurses-base_5.8+20110307-1 ncurses-bin_5.9-1 netbase_4.45 nullmailer_1:1.04-1.2 passwd_1:4.1.4.2+svn3283-3 patch_2.6.1-1 perl_5.10.1-19 perl-base_5.10.1-19 perl-modules_5.10.1-19 po-debconf_1.0.16+nmu1 procps_1:3.2.8-10 psmisc_22.13-1 readline-common_6.1-3 sed_4.2.1-9 sensible-utils_0.0.6 sudo_1.7.4p6-1 sysv-rc_2.88dsf-13.1 sysvinit_2.88dsf-13.1 sysvinit-utils_2.88dsf-13.1 tar_1.25-3 tzdata_2011e-1 util-linux_2.17.2-9.1 wget_1.12-3 xz-utils_5.0.0-2 zlib1g_1:1.2.3.4.dfsg-3 zlib1g-dev_1:1.2.3.4.dfsg-3
┌──────────────────────────────────────────────────────────────────────────────┐
│ Build │
@@ -224,14 +247,14 @@ Package versions: apt_0.8.11.5 base-files_6.1 base-passwd_3.5.22 bash_4.1-3 binu
Unpack source
─────────────
-dpkg-source: warning: -sn is not a valid option for Dpkg::Source::Package::V3::quilt
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/Source/Package.pm line 258.
gpgv: keyblock resource `/home/buildd/.gnupg/trustedkeys.gpg': file open error
-gpgv: Signature made Wed Jan 19 13:19:58 2011 UTC using RSA key ID 2295D502
+gpgv: Signature made Tue Apr 12 08:22:29 2011 UTC using RSA key ID 2295D502
gpgv: Can't check signature: public key not found
-dpkg-source: warning: failed to verify signature on ./tabix_0.2.3-1.dsc
-dpkg-source: info: extracting tabix in tabix-0.2.3
-dpkg-source: info: unpacking tabix_0.2.3.orig.tar.bz2
-dpkg-source: info: unpacking tabix_0.2.3-1.debian.tar.gz
+dpkg-source: warning: failed to verify signature on ./tabix_0.2.4-1.dsc
+dpkg-source: info: extracting tabix in tabix-0.2.4
+dpkg-source: info: unpacking tabix_0.2.4.orig.tar.bz2
+dpkg-source: info: unpacking tabix_0.2.4-1.debian.tar.gz
Check disc space
────────────────
@@ -240,47 +263,61 @@ Check disc space
dpkg-buildpackage
─────────────────
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
dpkg-buildpackage: export CFLAGS from dpkg-buildflags (origin: vendor): -g -O2
dpkg-buildpackage: export CPPFLAGS from dpkg-buildflags (origin: vendor):
dpkg-buildpackage: export CXXFLAGS from dpkg-buildflags (origin: vendor): -g -O2
dpkg-buildpackage: export FFLAGS from dpkg-buildflags (origin: vendor): -g -O2
dpkg-buildpackage: export LDFLAGS from dpkg-buildflags (origin: vendor):
dpkg-buildpackage: source package tabix
-dpkg-buildpackage: source version 0.2.3-1
- dpkg-source --before-build tabix-0.2.3
+dpkg-buildpackage: source version 0.2.4-1
+ dpkg-source --before-build tabix-0.2.4
dpkg-buildpackage: host architecture armel
- /usr/bin/fakeroot debian/rules clean
+ fakeroot debian/rules clean
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
test -x debian/rules
dh_testroot
rm -f debian/stamp-makefile-build debian/stamp-makefile-install
/usr/bin/make -C . CFLAGS="-g -O2 -g -O2" CXXFLAGS="-g -O2 -g -O2" CPPFLAGS="" LDFLAGS="" -k clean
-make[1]: Entering directory `/build/buildd-tabix_0.2.3-1-armel-8kAbIf/tabix-0.2.3'
-make[2]: Entering directory `/build/buildd-tabix_0.2.3-1-armel-8kAbIf/tabix-0.2.3'
+make[1]: Entering directory `/build/buildd-tabix_0.2.4-1-armel-zvxOSy/tabix-0.2.4'
+make[2]: Entering directory `/build/buildd-tabix_0.2.4-1-armel-zvxOSy/tabix-0.2.4'
rm -fr gmon.out *.o a.out *.dSYM tabix bgzip *~ *.a tabix.aux tabix.log tabix.pdf *.class libtabix.*.dylib libtabix.so*
-make[2]: Leaving directory `/build/buildd-tabix_0.2.3-1-armel-8kAbIf/tabix-0.2.3'
-make[1]: Leaving directory `/build/buildd-tabix_0.2.3-1-armel-8kAbIf/tabix-0.2.3'
+make[2]: Leaving directory `/build/buildd-tabix_0.2.4-1-armel-zvxOSy/tabix-0.2.4'
+make[1]: Leaving directory `/build/buildd-tabix_0.2.4-1-armel-zvxOSy/tabix-0.2.4'
dh_clean
debian/rules build
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
test -x debian/rules
mkdir -p "."
/usr/share/cdbs/1/rules/buildcore.mk:109: WARNING: DEB_COMPRESS_EXCLUDE is a deprecated variable
/usr/bin/make -C . CFLAGS="-g -O2 -g -O2" CXXFLAGS="-g -O2 -g -O2" CPPFLAGS="" LDFLAGS=""
-make[1]: Entering directory `/build/buildd-tabix_0.2.3-1-armel-8kAbIf/tabix-0.2.3'
-make[2]: Entering directory `/build/buildd-tabix_0.2.3-1-armel-8kAbIf/tabix-0.2.3'
+make[1]: Entering directory `/build/buildd-tabix_0.2.4-1-armel-zvxOSy/tabix-0.2.4'
+make[2]: Entering directory `/build/buildd-tabix_0.2.4-1-armel-zvxOSy/tabix-0.2.4'
gcc -c -g -O2 -g -O2 -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE bgzf.c -o bgzf.o
gcc -c -g -O2 -g -O2 -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE kstring.c -o kstring.o
gcc -c -g -O2 -g -O2 -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE knetfile.c -o knetfile.o
gcc -c -g -O2 -g -O2 -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE index.c -o index.o
-ar -cru libtabix.a bgzf.o kstring.o knetfile.o index.o
+gcc -c -g -O2 -g -O2 -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE bedidx.c -o bedidx.o
+ar -cru libtabix.a bgzf.o kstring.o knetfile.o index.o bedidx.o
gcc -c -g -O2 -g -O2 -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE main.c -o main.o
gcc -g -O2 -g -O2 -o tabix main.o -lm -lz -L. -ltabix
gcc -c -g -O2 -g -O2 -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE bgzip.c -o bgzip.o
gcc -g -O2 -g -O2 -o bgzip bgzip.o bgzf.o knetfile.o -lz
-make[2]: Leaving directory `/build/buildd-tabix_0.2.3-1-armel-8kAbIf/tabix-0.2.3'
-make[1]: Leaving directory `/build/buildd-tabix_0.2.3-1-armel-8kAbIf/tabix-0.2.3'
+make[2]: Leaving directory `/build/buildd-tabix_0.2.4-1-armel-zvxOSy/tabix-0.2.4'
+make[1]: Leaving directory `/build/buildd-tabix_0.2.4-1-armel-zvxOSy/tabix-0.2.4'
touch debian/stamp-makefile-build
DEB_MAKE_CHECK_TARGET unset, not running checks
- /usr/bin/fakeroot debian/rules binary-arch
+ fakeroot debian/rules binary-arch
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
test -x debian/rules
dh_testroot
dh_prep
@@ -322,58 +359,59 @@ dpkg-shlibdeps: warning: dependency on libm.so.6 could be avoided if "debian/tab
dh_gencontrol -ptabix
dh_md5sums -ptabix
dh_builddeb -ptabix
-dpkg-deb: building package `tabix' in `../tabix_0.2.3-1_armel.deb'.
- dpkg-genchanges -B -marmel Build Daemon (arnold) <buildd_armel-arnold at buildd.debian.org> >../tabix_0.2.3-1_armel.changes
+dpkg-deb: building package `tabix' in `../tabix_0.2.4-1_armel.deb'.
+ dpkg-genchanges -B -marmel Build Daemon (ancina) <buildd_armel-ancina at buildd.debian.org> >../tabix_0.2.4-1_armel.changes
dpkg-genchanges: arch-specific upload - not including arch-independent packages
dpkg-genchanges: binary-only upload - not including any source code
- dpkg-source --after-build tabix-0.2.3
+ dpkg-source --after-build tabix-0.2.4
dpkg-buildpackage: binary only upload (no source included)
────────────────────────────────────────────────────────────────────────────────
-Build finished at 20110316-1502
+Build finished at 20110412-1025
-tabix_0.2.3-1_armel.changes:
+tabix_0.2.4-1_armel.changes:
Format: 1.8
-Date: Wed, 19 Jan 2011 22:16:39 +0900
+Date: Tue, 12 Apr 2011 17:15:33 +0900
Source: tabix
Binary: tabix
Architecture: armel
-Version: 0.2.3-1
+Version: 0.2.4-1
Distribution: sid
Urgency: low
-Maintainer: armel Build Daemon (arnold) <buildd_armel-arnold at buildd.debian.org>
+Maintainer: armel Build Daemon (ancina) <buildd_armel-ancina at buildd.debian.org>
Changed-By: Charles Plessy <plessy at debian.org>
Description:
tabix - generic indexer for TAB-delimited genome position files
-Closes: 606446
Changes:
- tabix (0.2.3-1) unstable; urgency=low
+ tabix (0.2.4-1) unstable; urgency=low
.
- * Initial release (Closes: #606446)
+ * New upstream release.
+ * Incremented Standards-Version to reflect conformance with Policy 3.9.2
+ (debian/control).
Checksums-Sha1:
- 1c10e90183b95a9783837b472aeee8c1aacaa08c 47560 tabix_0.2.3-1_armel.deb
+ b0d82a179d0101df362458433edacf984caca56e 52682 tabix_0.2.4-1_armel.deb
Checksums-Sha256:
- 24e3d01550bc445dea67cc9593623d6aeae53d372958451a457537e4d193b9dc 47560 tabix_0.2.3-1_armel.deb
+ 7a762de0831f139602fbed5e94f515979491469f8d23331cabd23a146749ce11 52682 tabix_0.2.4-1_armel.deb
Files:
- d01127997a8eeac71c6efecf2e7a4d54 47560 science optional tabix_0.2.3-1_armel.deb
+ 41c444cc1c83252edec1d06608bf8f64 52682 science optional tabix_0.2.4-1_armel.deb
┌──────────────────────────────────────────────────────────────────────────────┐
│ Package contents │
└──────────────────────────────────────────────────────────────────────────────┘
-tabix_0.2.3-1_armel.deb
+tabix_0.2.4-1_armel.deb
───────────────────────
new debian package, version 2.0.
- size 47560 bytes: control archive= 959 bytes.
- 778 bytes, 16 lines control
+ size 52682 bytes: control archive= 958 bytes.
+ 785 bytes, 16 lines control
587 bytes, 9 lines md5sums
Package: tabix
- Version: 0.2.3-1
+ Version: 0.2.4-1
Architecture: armel
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
- Installed-Size: 148
- Depends: libc6 (>= 2.7), zlib1g (>= 1:1.1.4)
+ Installed-Size: 156
+ Depends: libc6 (>= 2.7), zlib1g (>= 1:1.2.3.3.dfsg)
Section: science
Priority: optional
Homepage: http://samtools.sourceforge.net/tabix.shtml
@@ -385,25 +423,25 @@ tabix_0.2.3-1_armel.deb
chromosomal coordinates. Fast data retrieval also works over network if an URI
is given as a file name.
-drwxr-xr-x root/root 0 2011-03-16 15:02 ./
-drwxr-xr-x root/root 0 2011-03-16 15:02 ./usr/
-drwxr-xr-x root/root 0 2011-03-16 15:02 ./usr/bin/
--rwxr-xr-x root/root 23488 2011-03-16 15:02 ./usr/bin/bgzip
--rwxr-xr-x root/root 50076 2011-03-16 15:02 ./usr/bin/tabix
-drwxr-xr-x root/root 0 2011-03-16 15:02 ./usr/share/
-drwxr-xr-x root/root 0 2011-03-16 15:02 ./usr/share/doc/
-drwxr-xr-x root/root 0 2011-03-16 15:02 ./usr/share/doc/tabix/
--rw-r--r-- root/root 944 2010-12-08 17:38 ./usr/share/doc/tabix/NEWS.gz
--rw-r--r-- root/root 154 2011-01-19 13:16 ./usr/share/doc/tabix/changelog.Debian.gz
-drwxr-xr-x root/root 0 2011-03-16 15:02 ./usr/share/doc/tabix/examples/
+drwxr-xr-x root/root 0 2011-04-12 10:24 ./
+drwxr-xr-x root/root 0 2011-04-12 10:24 ./usr/
+drwxr-xr-x root/root 0 2011-04-12 10:24 ./usr/bin/
+-rwxr-xr-x root/root 23740 2011-04-12 10:24 ./usr/bin/bgzip
+-rwxr-xr-x root/root 57440 2011-04-12 10:24 ./usr/bin/tabix
+drwxr-xr-x root/root 0 2011-04-12 10:24 ./usr/share/
+drwxr-xr-x root/root 0 2011-04-12 10:24 ./usr/share/man/
+drwxr-xr-x root/root 0 2011-04-12 10:24 ./usr/share/man/man1/
+-rw-r--r-- root/root 1834 2011-04-12 10:24 ./usr/share/man/man1/tabix.1.gz
+drwxr-xr-x root/root 0 2011-04-12 10:24 ./usr/share/doc/
+drwxr-xr-x root/root 0 2011-04-12 10:24 ./usr/share/doc/tabix/
+-rw-r--r-- root/root 1169 2011-04-10 19:21 ./usr/share/doc/tabix/NEWS.gz
+-rw-r--r-- root/root 262 2011-04-12 08:16 ./usr/share/doc/tabix/changelog.Debian.gz
+drwxr-xr-x root/root 0 2011-04-12 10:24 ./usr/share/doc/tabix/examples/
-rw-r--r-- root/root 3778 2010-12-08 17:34 ./usr/share/doc/tabix/examples/example.gtf.gz
--rw-r--r-- root/root 260 2010-12-08 17:34 ./usr/share/doc/tabix/examples/example.gtf.gz.tbi
--rw-r--r-- root/root 2920 2010-12-08 17:38 ./usr/share/doc/tabix/changelog.gz
--rw-r--r-- root/root 1346 2011-01-19 13:03 ./usr/share/doc/tabix/copyright
-drwxr-xr-x root/root 0 2011-03-16 15:02 ./usr/share/man/
-drwxr-xr-x root/root 0 2011-03-16 15:02 ./usr/share/man/man1/
--rw-r--r-- root/root 1716 2011-03-16 15:02 ./usr/share/man/man1/tabix.1.gz
-lrwxrwxrwx root/root 0 2011-03-16 15:02 ./usr/share/man/man1/bgzip.1.gz -> tabix.1.gz
+-rw-r--r-- root/root 259 2011-04-10 19:21 ./usr/share/doc/tabix/examples/example.gtf.gz.tbi
+-rw-r--r-- root/root 3487 2011-04-10 19:21 ./usr/share/doc/tabix/changelog.gz
+-rw-r--r-- root/root 1473 2011-04-12 07:17 ./usr/share/doc/tabix/copyright
+lrwxrwxrwx root/root 0 2011-04-12 10:24 ./usr/share/man/man1/bgzip.1.gz -> tabix.1.gz
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -412,9 +450,70 @@ lrwxrwxrwx root/root 0 2011-03-16 15:02 ./usr/share/man/man1/bgzip.1.gz
Built successfully
────────────────────────────────────────────────────────────────────────────────
-Purging /var/lib/schroot/mount/sid-armel-sbuild-d118f697-7214-4092-bb44-a5286c819e81/build/buildd-tabix_0.2.3-1-armel-8kAbIf
-Not removing build depends: cloned chroot in use
-────────────────────────────────────────────────────────────────────────────────
-Finished at 20110316-1502
-Build needed 00:03:56, 1160k disc space
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Post Build │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+Purging /var/lib/schroot/mount/sid-armel-sbuild-7e450777-8b6b-4da6-b1c5-59f96f059e65/build/buildd-tabix_0.2.4-1-armel-zvxOSy
+Reading package lists...
+Building dependency tree...
+Reading state information...
+0 upgraded, 0 newly installed, 0 to remove and 11 not upgraded.
+Reading package lists...
+Building dependency tree...
+Reading state information...
+The following packages will be REMOVED:
+ cdbs* debhelper* file* gettext* gettext-base* groff-base* html2text*
+ intltool-debian* libcroco3* libglib2.0-0* libmagic1* libpipeline1*
+ libunistring0* libxml2* man-db* po-debconf* zlib1g-dev*
+0 upgraded, 0 newly installed, 17 to remove and 11 not upgraded.
+After this operation, 27.0 MB disk space will be freed.
+(Reading database ... 12098 files and directories currently installed.)
+Removing cdbs ...
+Removing debhelper ...
+Removing file ...
+Removing po-debconf ...
+Removing intltool-debian ...
+Removing gettext ...
+Removing gettext-base ...
+Removing man-db ...
+Purging configuration files for man-db ...
+Removing groff-base ...
+Purging configuration files for groff-base ...
+Removing html2text ...
+Purging configuration files for html2text ...
+Removing libcroco3 ...
+Purging configuration files for libcroco3 ...
+Removing libglib2.0-0 ...
+Purging configuration files for libglib2.0-0 ...
+Removing libmagic1 ...
+Purging configuration files for libmagic1 ...
+Removing libpipeline1 ...
+Purging configuration files for libpipeline1 ...
+Removing libunistring0 ...
+Purging configuration files for libunistring0 ...
+Removing libxml2 ...
+Purging configuration files for libxml2 ...
+Removing zlib1g-dev ...
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Summary │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+Architecture: armel
+Build-Space: 1316
+Build-Time: 73
+Distribution: sid
+Install-Time: 28
+Job: tabix_0.2.4-1
+Package: tabix
+Package-Time: 134
+Source-Version: 0.2.4-1
+Space: 1316
+Status: successful
+Version: 0.2.4-1
+────────────────────────────────────────────────────────────────────────────────
+Finished at 20110412-1025
+Build needed 00:02:14, 1316k disc space
+Signature with key 'A1EAA0BB' requested:
diff --git a/hppa.log b/hppa.log
deleted file mode 100644
index a6f10b2..0000000
--- a/hppa.log
+++ /dev/null
@@ -1,440 +0,0 @@
-From buildd at penalosa.debian.org Sat Mar 26 23:35:17 2011
-Return-path: <buildd at penalosa.debian.org>
-Received: from kokkonen.debian.org ([2001:41b8:202:deb:216:35ff:fec4:6340])
- from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
- CN=kokkonen.debian.org,
- EMAIL=hostmaster at kokkonen.debian.org (verified)
- by grieg.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
- (Exim 4.69) (envelope-from <buildd at penalosa.debian.org>)
- id 1Q3d0n-0004Pq-4P
- for logs at buildd.debian.org; Sat, 26 Mar 2011 23:35:17 +0000
-Received: from penalosa.debian.org ([192.25.206.68])
- from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
- CN=penalosa.debian.org,
- EMAIL=hostmaster at penalosa.debian.org (verified)
- by kokkonen.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
- (Exim 4.69) (envelope-from <buildd at penalosa.debian.org>)
- id 1Q3d0j-0005B8-L5; Sat, 26 Mar 2011 23:35:14 +0000
-Received: from buildd by penalosa.debian.org with local (Exim 4.69)
- (envelope-from <buildd at penalosa.debian.org>)
- id 1Q3d0f-0005Sm-Gi; Sat, 26 Mar 2011 23:35:09 +0000
-From: buildd on penalosa <buildd at penalosa.debian.org>
-To: dannf+buildd at dannf.org,logs at buildd.debian.org
-Subject: Log for successful build of tabix_0.2.3-1 on hppa (dist=sid)
-Content-Type: text/plain; charset=UTF-8
-Content-Transfer-Encoding: 8bit
-Message-Id: <E1Q3d0f-0005Sm-Gi at penalosa.debian.org>
-Date: Sat, 26 Mar 2011 23:35:09 +0000
-Delivered-To: logs at buildd.debian.org
-
-sbuild (Debian sbuild) 0.61.0 (23 Feb 2011) on penalosa.debian.org
-
-╔══════════════════════════════════════════════════════════════════════════════╗
-║ tabix 0.2.3-1 (hppa) 26 Mar 2011 23:32 ║
-╚══════════════════════════════════════════════════════════════════════════════╝
-
-Package: tabix
-Version: 0.2.3-1
-Source Version: 0.2.3-1
-Architecture: hppa
-Hit http://incoming.debian.org sid InRelease
-Ign http://incoming.debian.org InRelease
-Get:1 http://spohr.debian.org sid InRelease [181 kB]
-Hit http://incoming.debian.org Release.gpg
-Hit http://incoming.debian.org sid/main Sources/DiffIndex
-Hit http://incoming.debian.org sid/contrib Sources/DiffIndex
-Hit http://incoming.debian.org sid/main hppa Packages/DiffIndex
-Hit http://incoming.debian.org sid/contrib hppa Packages/DiffIndex
-Ign http://incoming.debian.org sid/contrib TranslationIndex
-Hit http://incoming.debian.org sid/main TranslationIndex
-Get:2 http://spohr.debian.org sid/main Sources/DiffIndex [2038 B]
-Hit http://incoming.debian.org Release
-Hit http://spohr.debian.org sid/contrib Sources/DiffIndex
-Hit http://incoming.debian.org Sources
-Hit http://incoming.debian.org Packages
-Get:3 http://spohr.debian.org sid/main hppa Packages/DiffIndex [2038 B]
-Hit http://spohr.debian.org sid/contrib hppa Packages/DiffIndex
-Ign http://spohr.debian.org sid/contrib TranslationIndex
-Hit http://spohr.debian.org sid/main TranslationIndex
-Get:4 http://spohr.debian.org sid/main 2011-03-26-2230.42.pdiff [22.8 kB]
-Get:5 http://spohr.debian.org sid/main 2011-03-26-2230.42.pdiff [22.8 kB]
-Get:6 http://spohr.debian.org sid/main hppa 2011-03-26-2230.42.pdiff [7938 B]
-Ign http://spohr.debian.org sid/contrib Translation-en
-Ign http://incoming.debian.org sid/contrib Translation-en
-Ign http://incoming.debian.org Translation-en
-Get:7 http://spohr.debian.org sid/main hppa 2011-03-26-2230.42.pdiff [7938 B]
-Fetched 216 kB in 13s (15.7 kB/s)
-Reading package lists...
-
-┌──────────────────────────────────────────────────────────────────────────────┐
-│ Fetch source files │
-└──────────────────────────────────────────────────────────────────────────────┘
-
-
-Check APT
-─────────
-
-Checking available source versions...
-
-Download source files with APT
-──────────────────────────────
-
-Reading package lists...
-Building dependency tree...
-Reading state information...
-NOTICE: 'tabix' packaging is maintained in the 'Git' version control system at:
-git://git.debian.org/debian-med/tabix.git
-Need to get 50.4 kB of source archives.
-Get:1 http://spohr.debian.org/debian/ sid/main tabix 0.2.3-1 (dsc) [1882 B]
-Get:2 http://spohr.debian.org/debian/ sid/main tabix 0.2.3-1 (tar) [46.4 kB]
-Get:3 http://spohr.debian.org/debian/ sid/main tabix 0.2.3-1 (diff) [2130 B]
-Fetched 50.4 kB in 0s (79.3 kB/s)
-Download complete and in download only mode
-
-Check arch
-──────────
-
-
-┌──────────────────────────────────────────────────────────────────────────────┐
-│ Install core build dependencies (internal resolver) │
-└──────────────────────────────────────────────────────────────────────────────┘
-
-Build-Depends: build-essential, fakeroot
-Checking for already installed dependencies...
-build-essential: already installed (11.5)
-fakeroot: already installed (1.14.5-2)
-Checking for dependency conflicts...
-Installing positive dependencies:
-Reading package lists...
-Building dependency tree...
-Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 7 not upgraded.
-Removing negative dependencies:
-Reading package lists...
-Building dependency tree...
-Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 7 not upgraded.
-Checking correctness of dependencies...
-
-┌──────────────────────────────────────────────────────────────────────────────┐
-│ Install tabix build dependencies (internal resolver) │
-└──────────────────────────────────────────────────────────────────────────────┘
-
-Build-Depends: base-files, base-passwd, bash, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, ncurses-base, ncurses-bin, perl-base, sed, login, sysvinit-utils, sysvinit, tar, bsdutils, mount, util-linux, libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), cdbs, debhelper (>= 8), zlib1g-dev
-Checking for already installed dependencies...
-base-files: already installed (6.1)
-base-passwd: already installed (3.5.22)
-bash: already installed (4.1-3)
-coreutils: already installed (8.5-1)
-dash: already installed (0.5.5.1-7.4)
-debianutils: already installed (3.4.4)
-diffutils: already installed (1:3.0-1)
-dpkg: already installed (1.15.8.10)
-e2fsprogs: already installed (1.41.12-2)
-findutils: already installed (4.4.2-1+b1)
-grep: already installed (2.6.3-3)
-gzip: already installed (1.3.12-9)
-hostname: already installed (3.06)
-ncurses-base: already installed (5.8-1)
-ncurses-bin: already installed (5.8+20110307-1)
-perl-base: already installed (5.10.1-18)
-sed: already installed (4.2.1-9)
-login: already installed (1:4.1.4.2+svn3283-3)
-sysvinit-utils: already installed (2.88dsf-13.1)
-sysvinit: already installed (2.88dsf-13.1)
-tar: already installed (1.25-3)
-bsdutils: already installed (1:2.17.2-9.1)
-mount: already installed (2.17.2-9.1)
-util-linux: already installed (2.17.2-9.1)
-libc6-dev: already installed (2.11.2-10)
-gcc: already installed (4:4.4.5-4 >= 4:4.4.3 is satisfied)
-g++: already installed (4:4.4.5-4 >= 4:4.4.3 is satisfied)
-make: already installed (3.81-8)
-dpkg-dev: already installed (1.15.8.10 >= 1.13.5 is satisfied)
-cdbs: missing
-debhelper: already installed (8.1.2 >= 8 is satisfied)
-zlib1g-dev: missing
-Checking for dependency conflicts...
-Installing positive dependencies: cdbs zlib1g-dev
-Reading package lists...
-Building dependency tree...
-Reading state information...
-Suggested packages:
- devscripts doc-base
-Recommended packages:
- autotools-dev
-The following NEW packages will be installed:
- cdbs zlib1g-dev
-debconf: delaying package configuration, since apt-utils is not installed
-0 upgraded, 2 newly installed, 0 to remove and 7 not upgraded.
-Need to get 0 B/1460 kB of archives.
-After this operation, 2183 kB of additional disk space will be used.
-Selecting previously deselected package cdbs.
-(Reading database ... 13960 files and directories currently installed.)
-Unpacking cdbs (from .../archives/cdbs_0.4.92_all.deb) ...
-Selecting previously deselected package zlib1g-dev.
-Unpacking zlib1g-dev (from .../zlib1g-dev_1%3a1.2.3.4.dfsg-3_hppa.deb) ...
-Processing triggers for man-db ...
-Setting up cdbs (0.4.92) ...
-Setting up zlib1g-dev (1:1.2.3.4.dfsg-3) ...
-Removing negative dependencies:
-Reading package lists...
-Building dependency tree...
-Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 7 not upgraded.
-Checking correctness of dependencies...
-Kernel: Linux 2.6.32-5-parisc64 hppa (parisc64)
-Toolchain package versions: binutils_2.21.0.20110302-2 dpkg-dev_1.15.8.10 g++-4.4_4.4.5-14 gcc-4.4_4.4.5-14 libc6-dev_2.11.2-10 libstdc++6_4.5.2-6 libstdc++6-4.4-dev_4.4.5-14 linux-libc-dev_2.6.37-2
-Package versions: apt_0.8.11.5 autoconf_2.67-2 autotools-dev_20100122.1 base-files_6.1 base-passwd_3.5.22 bash_4.1-3 binutils_2.21.0.20110302-2 bsdmainutils_8.2.2 bsdutils_1:2.17.2-9.1 build-essential_11.5 bzip2_1.0.5-6 cdbs_0.4.92 coreutils_8.5-1 cpio_2.11-7 cpp_4:4.4.5-4 cpp-4.4_4.4.5-14 dash_0.5.5.1-7.4 debconf_1.5.38 debconf-i18n_1.5.38 debhelper_8.1.2 debian-archive-keyring_2010.08.28 debianutils_3.4.4 diffutils_1:3.0-1 dmsetup_2:1.02.63-2 dpkg_1.15.8.10 dpkg-dev_1.15.8.10 e2fslibs_1.41.12-2 e2fsprogs_1.41.12-2 fakeroot_1.14.5-2 file_5.04-5 findutils_4.4.2-1+b1 fontconfig-config_2.8.0-2.1 g++_4:4.4.5-4 g++-4.4_4.4.5-14 gcc_4:4.4.5-4 gcc-4.2-base_4.2.4-6 gcc-4.3-base_4.3.5-4 gcc-4.4_4.4.5-14 gcc-4.4-base_4.4.5-14 gcc-4.5-base_4.5.2-6 gettext_0.18.1.1-3 gettext-base_0.18.1.1-3 gnupg_1.4.11-3 gpgv_1.4.11-3 grep_2.6.3-3 groff-base_1.21-5 gzip_1.3.12-9 hostname_3.06 html2text_1.3.2a-15 initscripts_2.88dsf-13.1 insserv_1.14.0-2 intltool-debian_0.35.0+20060710.1 libacl1_2.2.49-4 libattr1_1:2.4.44-2 libblkid1_2.17.2-9.1 libbz2-1.0_1.0.5-6 libc-bin_2.11.2-10 libc-dev-bin_2.11.2-10 libc6_2.11.2-10 libc6-dev_2.11.2-10 libcomerr2_1.41.12-2 libcroco3_0.6.2-1 libdb4.7_4.7.25-12 libdb4.8_4.8.30-5 libdevmapper1.02.1_2:1.02.63-2 libdpkg-perl_1.15.8.10 libexpat1_2.0.1-7 libfontconfig1_2.8.0-2.1 libfreetype6_2.4.2-2.1 libgcc4_4.5.2-6 libgdbm3_1.8.3-9 libglib2.0-0_2.28.2-1 libgmp10_2:5.0.1+dfsg-6 libgmp10-dev_2:5.0.1+dfsg-6 libgmp3c2_2:4.3.2+dfsg-1 libgmpxx4ldbl_2:5.0.1+dfsg-6 libgomp1_4.5.2-6 libice6_2:1.0.7-1 libjpeg62_6b1-1 liblocale-gettext-perl_1.05-6 liblzma2_5.0.0-2 libmagic1_5.04-5 libmpfr1ldbl_2.4.2-3 libmpfr4_3.0.0-9 libncurses5_5.8+20110307-1 libncurses5-dev_5.8+20110307-1 libncursesw5_5.8+20110307-1 libpam-modules_1.1.2-2 libpam-runtime_1.1.2-2 libpam0g_1.1.2-2 libpcre3_8.12-3 libpipeline1_1.2.0-1 libpng12-0_1.2.44-2 libreadline-dev_6.1-3 libreadline5_5.2-7 libreadline6_6.1-3 libreadline6-dev_6.1-3 libselinux1_2.0.96-1 libsepol1_2.0.42-1 libslang2_2.2.2-4+b1 libsm6_2:1.2.0-1 libss2_1.41.12-2 libstdc++6_4.5.2-6 libstdc++6-4.4-dev_4.4.5-14 libtext-charwidth-perl_0.04-6 libtext-iconv-perl_1.7-2 libtext-wrapi18n-perl_0.06-7 libtimedate-perl_1.2000-1 libtool_2.2.6b-2 libudev0_166-1 libunistring0_0.9.3-3 libusb-0.1-4_2:0.1.12-17 libuuid1_2.17.2-9.1 libx11-6_2:1.4.1-5 libx11-data_2:1.4.1-5 libxau6_1:1.0.6-1 libxcb1_1.7-2 libxdmcp6_1:1.1.0-1 libxext6_2:1.2.0-2 libxft2_2.2.0-2 libxinerama1_2:1.1.1-1 libxml2_2.7.8.dfsg-2 libxpm4_1:3.5.9-1 libxrender1_1:0.9.6-1 libxt6_1:1.1.1-1 linux-libc-dev_2.6.37-2 login_1:4.1.4.2+svn3283-3 lsb-base_3.2-27 lzma_4.43-14 m4_1.4.14-3 make_3.81-8 man-db_2.5.9-4 mawk_1.3.3-15 mount_2.17.2-9.1 ncurses-base_5.8-1 ncurses-bin_5.8+20110307-1 passwd_1:4.1.4.2+svn3283-3 patch_2.6.1-1 perl_5.10.1-18 perl-base_5.10.1-18 perl-modules_5.10.1-18 po-debconf_1.0.16+nmu1 procps_1:3.2.8-10 readline-common_6.1-3 sed_4.2.1-9 sensible-utils_0.0.6 sudo_1.7.4p6-1 swi-prolog_5.10.1-1.1 swi-prolog-nox_5.10.1-1.1 swi-prolog-x_5.10.1-1.1 sysv-rc_2.88dsf-13.1 sysvinit_2.88dsf-13.1 sysvinit-utils_2.88dsf-13.1 tar_1.25-3 ttf-dejavu-core_2.33-1 tzdata_2011c-1 ucf_3.0025+nmu1 util-linux_2.17.2-9.1 x11-common_1:7.6+4 xz-utils_5.0.0-2 zlib1g_1:1.2.3.4.dfsg-3 zlib1g-dev_1:1.2.3.4.dfsg-3
-
-┌──────────────────────────────────────────────────────────────────────────────┐
-│ Build │
-└──────────────────────────────────────────────────────────────────────────────┘
-
-
-Unpack source
-─────────────
-
-Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/Source/Package.pm line 258.
-gpgv: keyblock resource `~/.gnupg/trustedkeys.gpg': file open error
-gpgv: Signature made Wed Jan 19 13:19:58 2011 UTC using RSA key ID 2295D502
-gpgv: Can't check signature: public key not found
-dpkg-source: warning: failed to verify signature on ./tabix_0.2.3-1.dsc
-dpkg-source: info: extracting tabix in tabix-0.2.3
-dpkg-source: info: unpacking tabix_0.2.3.orig.tar.bz2
-dpkg-source: info: unpacking tabix_0.2.3-1.debian.tar.gz
-
-Check disc space
-────────────────
-
-
-dpkg-buildpackage
-─────────────────
-
-Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
-dpkg-buildpackage: export CFLAGS from dpkg-buildflags (origin: vendor): -g -O2
-dpkg-buildpackage: export CPPFLAGS from dpkg-buildflags (origin: vendor):
-dpkg-buildpackage: export CXXFLAGS from dpkg-buildflags (origin: vendor): -g -O2
-dpkg-buildpackage: export FFLAGS from dpkg-buildflags (origin: vendor): -g -O2
-dpkg-buildpackage: export LDFLAGS from dpkg-buildflags (origin: vendor):
-dpkg-buildpackage: source package tabix
-dpkg-buildpackage: source version 0.2.3-1
- dpkg-source --before-build tabix-0.2.3
-dpkg-buildpackage: host architecture hppa
- fakeroot debian/rules clean
-Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
-Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
-Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
-Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
-test -x debian/rules
-dh_testroot
-rm -f debian/stamp-makefile-build debian/stamp-makefile-install
-/usr/bin/make -C . CFLAGS="-g -O2 -g -O2" CXXFLAGS="-g -O2 -g -O2" CPPFLAGS="" LDFLAGS="" -k clean
-make[1]: Entering directory `/build/buildd-tabix_0.2.3-1-hppa-Ucc9Fi/tabix-0.2.3'
-make[2]: Entering directory `/build/buildd-tabix_0.2.3-1-hppa-Ucc9Fi/tabix-0.2.3'
-rm -fr gmon.out *.o a.out *.dSYM tabix bgzip *~ *.a tabix.aux tabix.log tabix.pdf *.class libtabix.*.dylib libtabix.so*
-make[2]: Leaving directory `/build/buildd-tabix_0.2.3-1-hppa-Ucc9Fi/tabix-0.2.3'
-make[1]: Leaving directory `/build/buildd-tabix_0.2.3-1-hppa-Ucc9Fi/tabix-0.2.3'
-dh_clean
- debian/rules build
-Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
-Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
-Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
-Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
-test -x debian/rules
-mkdir -p "."
-/usr/share/cdbs/1/rules/buildcore.mk:109: WARNING: DEB_COMPRESS_EXCLUDE is a deprecated variable
-/usr/bin/make -C . CFLAGS="-g -O2 -g -O2" CXXFLAGS="-g -O2 -g -O2" CPPFLAGS="" LDFLAGS=""
-make[1]: Entering directory `/build/buildd-tabix_0.2.3-1-hppa-Ucc9Fi/tabix-0.2.3'
-make[2]: Entering directory `/build/buildd-tabix_0.2.3-1-hppa-Ucc9Fi/tabix-0.2.3'
-gcc -c -g -O2 -g -O2 -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE bgzf.c -o bgzf.o
-gcc -c -g -O2 -g -O2 -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE kstring.c -o kstring.o
-gcc -c -g -O2 -g -O2 -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE knetfile.c -o knetfile.o
-gcc -c -g -O2 -g -O2 -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE index.c -o index.o
-ar -cru libtabix.a bgzf.o kstring.o knetfile.o index.o
-gcc -c -g -O2 -g -O2 -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE main.c -o main.o
-gcc -g -O2 -g -O2 -o tabix main.o -lm -lz -L. -ltabix
-gcc -c -g -O2 -g -O2 -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE bgzip.c -o bgzip.o
-gcc -g -O2 -g -O2 -o bgzip bgzip.o bgzf.o knetfile.o -lz
-make[2]: Leaving directory `/build/buildd-tabix_0.2.3-1-hppa-Ucc9Fi/tabix-0.2.3'
-make[1]: Leaving directory `/build/buildd-tabix_0.2.3-1-hppa-Ucc9Fi/tabix-0.2.3'
-touch debian/stamp-makefile-build
-DEB_MAKE_CHECK_TARGET unset, not running checks
- fakeroot debian/rules binary-arch
-Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
-Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
-Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
-Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
-test -x debian/rules
-dh_testroot
-dh_prep
-dh_installdirs -A
-mkdir -p "."
-/usr/share/cdbs/1/rules/buildcore.mk:109: WARNING: DEB_COMPRESS_EXCLUDE is a deprecated variable
-DEB_MAKE_CHECK_TARGET unset, not running checks
-DEB_MAKE_INSTALL_TARGET unset, skipping default makefile.mk common-install target
-Adding cdbs dependencies to debian/tabix.substvars
-dh_installdirs -ptabix
-dh_installdocs -ptabix ./NEWS
-dh_installexamples -ptabix
-dh_installman -ptabix
-dh_installinfo -ptabix
-dh_installmenu -ptabix
-dh_installcron -ptabix
-dh_installinit -ptabix
-dh_installdebconf -ptabix
-dh_installemacsen -ptabix
-dh_installcatalogs -ptabix
-dh_installpam -ptabix
-dh_installlogrotate -ptabix
-dh_installlogcheck -ptabix
-dh_installchangelogs -ptabix ./ChangeLog
-dh_installudev -ptabix
-dh_lintian -ptabix
-dh_bugfiles -ptabix
-dh_install -ptabix
-dh_link -ptabix
-dh_installmime -ptabix
-dh_strip -ptabix
-dh_compress -ptabix -X .tbi
-dh_fixperms -ptabix
-dh_makeshlibs -ptabix
-dh_installdeb -ptabix
-dh_perl -ptabix
-dh_shlibdeps -ptabix
-dpkg-shlibdeps: warning: dependency on libm.so.6 could be avoided if "debian/tabix/usr/bin/tabix" were not uselessly linked against it (they use none of its symbols).
-dh_gencontrol -ptabix
-dh_md5sums -ptabix
-dh_builddeb -ptabix
-dpkg-deb: building package `tabix' in `../tabix_0.2.3-1_hppa.deb'.
- dpkg-genchanges -B -mhppa Build Daemon (penalosa) <buildd_hppa-penalosa at buildd.debian.org> >../tabix_0.2.3-1_hppa.changes
-dpkg-genchanges: arch-specific upload - not including arch-independent packages
-dpkg-genchanges: binary-only upload - not including any source code
- dpkg-source --after-build tabix-0.2.3
-dpkg-buildpackage: binary only upload (no source included)
-────────────────────────────────────────────────────────────────────────────────
-Build finished at 20110326-2334
-
-tabix_0.2.3-1_hppa.changes:
-Format: 1.8
-Date: Wed, 19 Jan 2011 22:16:39 +0900
-Source: tabix
-Binary: tabix
-Architecture: hppa
-Version: 0.2.3-1
-Distribution: sid
-Urgency: low
-Maintainer: hppa Build Daemon (penalosa) <buildd_hppa-penalosa at buildd.debian.org>
-Changed-By: Charles Plessy <plessy at debian.org>
-Description:
- tabix - generic indexer for TAB-delimited genome position files
-Closes: 606446
-Changes:
- tabix (0.2.3-1) unstable; urgency=low
- .
- * Initial release (Closes: #606446)
-Checksums-Sha1:
- 8062dbd3e408289bf2904866b1a31b85c3d72f9b 54144 tabix_0.2.3-1_hppa.deb
-Checksums-Sha256:
- 2723e85ec8bd1aaa116a1339cd517b69b656202a819a3d47b63594fecbe3ee07 54144 tabix_0.2.3-1_hppa.deb
-Files:
- 73d4a9cb24b97d6c655b3b24cb2157a1 54144 science optional tabix_0.2.3-1_hppa.deb
-
-┌──────────────────────────────────────────────────────────────────────────────┐
-│ Package contents │
-└──────────────────────────────────────────────────────────────────────────────┘
-
-
-tabix_0.2.3-1_hppa.deb
-──────────────────────
-
- new debian package, version 2.0.
- size 54144 bytes: control archive= 965 bytes.
- 778 bytes, 16 lines control
- 587 bytes, 9 lines md5sums
- Package: tabix
- Version: 0.2.3-1
- Architecture: hppa
- Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
- Installed-Size: 160
- Depends: libc6 (>= 2.11), zlib1g (>= 1:1.1.4)
- Section: science
- Priority: optional
- Homepage: http://samtools.sourceforge.net/tabix.shtml
- Description: generic indexer for TAB-delimited genome position files
- Tabix indexes files where some columns indicate sequence coordinates: name
- (usually a chromosme), start and stop. The input data file must be position
- sorted and compressed by bgzip (provided in this package), which has a gzip
- like interface. After indexing, tabix is able to quickly retrieve data lines by
- chromosomal coordinates. Fast data retrieval also works over network if an URI
- is given as a file name.
-
-drwxr-xr-x root/root 0 2011-03-26 23:34 ./
-drwxr-xr-x root/root 0 2011-03-26 23:34 ./usr/
-drwxr-xr-x root/root 0 2011-03-26 23:34 ./usr/bin/
--rwxr-xr-x root/root 59600 2011-03-26 23:34 ./usr/bin/tabix
--rwxr-xr-x root/root 26688 2011-03-26 23:34 ./usr/bin/bgzip
-drwxr-xr-x root/root 0 2011-03-26 23:34 ./usr/share/
-drwxr-xr-x root/root 0 2011-03-26 23:34 ./usr/share/doc/
-drwxr-xr-x root/root 0 2011-03-26 23:34 ./usr/share/doc/tabix/
--rw-r--r-- root/root 154 2011-01-19 13:16 ./usr/share/doc/tabix/changelog.Debian.gz
--rw-r--r-- root/root 944 2010-12-08 17:38 ./usr/share/doc/tabix/NEWS.gz
-drwxr-xr-x root/root 0 2011-03-26 23:34 ./usr/share/doc/tabix/examples/
--rw-r--r-- root/root 3778 2010-12-08 17:34 ./usr/share/doc/tabix/examples/example.gtf.gz
--rw-r--r-- root/root 260 2010-12-08 17:34 ./usr/share/doc/tabix/examples/example.gtf.gz.tbi
--rw-r--r-- root/root 1346 2011-01-19 13:03 ./usr/share/doc/tabix/copyright
--rw-r--r-- root/root 2920 2010-12-08 17:38 ./usr/share/doc/tabix/changelog.gz
-drwxr-xr-x root/root 0 2011-03-26 23:34 ./usr/share/man/
-drwxr-xr-x root/root 0 2011-03-26 23:34 ./usr/share/man/man1/
--rw-r--r-- root/root 1716 2011-03-26 23:34 ./usr/share/man/man1/tabix.1.gz
-lrwxrwxrwx root/root 0 2011-03-26 23:34 ./usr/share/man/man1/bgzip.1.gz -> tabix.1.gz
-
-
-┌──────────────────────────────────────────────────────────────────────────────┐
-│ Finished │
-└──────────────────────────────────────────────────────────────────────────────┘
-
-Built successfully
-────────────────────────────────────────────────────────────────────────────────
-
-┌──────────────────────────────────────────────────────────────────────────────┐
-│ Post Build │
-└──────────────────────────────────────────────────────────────────────────────┘
-
-Purging /var/lib/schroot/mount/sid-hppa-sbuild-3ea30306-7a10-4080-9a14-775209a5b800/build/buildd-tabix_0.2.3-1-hppa-Ucc9Fi
-Reading package lists...
-Building dependency tree...
-Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 7 not upgraded.
-Reading package lists...
-Building dependency tree...
-Reading state information...
-The following packages will be REMOVED:
- cdbs* zlib1g-dev*
-0 upgraded, 0 newly installed, 2 to remove and 7 not upgraded.
-After this operation, 2183 kB disk space will be freed.
-(Reading database ... 14043 files and directories currently installed.)
-Removing cdbs ...
-Removing zlib1g-dev ...
-Processing triggers for man-db ...
-
-┌──────────────────────────────────────────────────────────────────────────────┐
-│ Summary │
-└──────────────────────────────────────────────────────────────────────────────┘
-
-Architecture: hppa
-Build-Space: 1208
-Build-Time: 53
-Distribution: sid
-Install-Time: 27
-Job: tabix_0.2.3-1
-Package: tabix
-Package-Time: 116
-Source-Version: 0.2.3-1
-Space: 1208
-Status: successful
-Version: 0.2.3-1
-────────────────────────────────────────────────────────────────────────────────
-Finished at 20110326-2334
-Build needed 00:01:56, 1208k disc space
-
diff --git a/hurd-i386.log b/hurd-i386.log
index ebdba69..7fa95cb 100644
--- a/hurd-i386.log
+++ b/hurd-i386.log
@@ -1,66 +1,65 @@
-From buildd at mozart.debian.net Sun Mar 20 11:22:09 2011
-Return-path: <buildd at mozart.debian.net>
-Received: from callisto.debian.net ([80.87.129.151])
+From buildd at rossini.debian.net Tue Apr 12 11:01:29 2011
+Return-path: <buildd at rossini.debian.net>
+Received: from io.ethz.ch ([129.132.80.17] helo=io.debian.net)
by grieg.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
- (Exim 4.69) (envelope-from <buildd at mozart.debian.net>)
- id 1Q1Gi0-0006y6-Uo
- for logs at buildd.debian.org; Sun, 20 Mar 2011 11:22:09 +0000
-Received: from mozart.debian.net ([10.1.0.1])
- by callisto.debian.net with esmtp (Exim 4.69)
- (envelope-from <buildd at mozart.debian.net>)
- id 1Q1Ghw-0002Tt-No; Sun, 20 Mar 2011 11:22:04 +0000
-Received: from buildd by mozart.debian.net with local (Exim 4.72)
- (envelope-from <buildd at mozart.debian.net>)
- id 1Q1Gi7-0003yN-Km; Sun, 20 Mar 2011 11:22:15 +0000
-Date: Sun, 20 Mar 2011 11:22:15 +0000
-Message-Id: <E1Q1Gi7-0003yN-Km at mozart.debian.net>
-From: Build Daemon <buildd at mozart.debian.net>
-To: samuel.thibault at labri.fr, mbanck at gmx.net, logs at debian-ports.org,
+ (Exim 4.69) (envelope-from <buildd at rossini.debian.net>)
+ id 1Q9bLc-0000TI-Jg
+ for logs at buildd.debian.org; Tue, 12 Apr 2011 11:01:29 +0000
+Received: from hurd.ethz.ch ([192.33.98.55] helo=rossini.debian.net)
+ by io.debian.net with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
+ (Exim 4.72) (envelope-from <buildd at rossini.debian.net>)
+ id 1Q9bLV-0005bA-5F; Tue, 12 Apr 2011 13:01:21 +0200
+Received: from buildd by rossini.debian.net with local (Exim 4.72)
+ (envelope-from <buildd at rossini.debian.net>)
+ id 1Q9bLU-0004qc-0y; Tue, 12 Apr 2011 11:01:20 +0000
+Date: Tue, 12 Apr 2011 11:01:20 +0000
+Message-Id: <E1Q9bLU-0004qc-0y at rossini.debian.net>
+From: Build Daemon <buildd at rossini.debian.net>
+To: samuel.thibault at labri.fr, mbanck at debian.org, logs at debian-ports.org,
logs at buildd.debian.org, debian-hurd-build-logs at lists.alioth.debian.org
-Subject: Log for successful build of tabix_0.2.3-1 on hurd-i386 (dist=sid)
+Subject: Log for successful build of tabix_0.2.4-1 on hurd-i386 (dist=sid)
Content-Type: text/plain; charset=UTF-8
Content-Transfer-Encoding: 8bit
Delivered-To: logs at buildd.debian.org
-sbuild (Debian sbuild) 0.59.1 (31 Jan 2010) on mozart.debian.net
+sbuild (Debian sbuild) 0.60.0 (23 Feb 2010) on rossini.debian.net
╔══════════════════════════════════════════════════════════════════════════════╗
-║ tabix 0.2.3-1 (hurd-i386) 20 mars 2011 11:17 ║
+║ tabix 0.2.4-1 (hurd-i386) 12 Apr 2011 10:53 ║
╚══════════════════════════════════════════════════════════════════════════════╝
Package: tabix
-Version: 0.2.3-1
+Version: 0.2.4-1
Architecture: hurd-i386
-Chroot Build Dir: /home/buildd/build/chroot-sid/build/buildd-tabix_0.2.3-1-hurd-i386-nmXD5q
-Start Time: 20110320-1117
+Chroot Build Dir: /home/buildd/build/chroot-sid/build/buildd-tabix_0.2.4-1-hurd-i386-nrTxuR
+Start Time: 20110412-1053
Ign file: ./ InRelease
Ign file: ./ Release.gpg
Ign file: ./ Release
Ign file: ./ Translation-en
Ign http://ftp.debian-ports.org unreleased InRelease
-Hit http://ftp.uk.debian.org sid InRelease
+Hit http://ftp.uk.debian.org unstable InRelease
+Hit http://ftp.uk.debian.org experimental InRelease
Hit http://ftp.debian-ports.org unreleased Release.gpg
-Ign http://incoming.debian.org InRelease
Hit http://ftp.debian-ports.org unreleased Release
-Hit http://incoming.debian.org Release.gpg
-Hit http://ftp.uk.debian.org sid/main Sources/DiffIndex
-Hit http://incoming.debian.org Release
-Hit http://ftp.uk.debian.org sid/contrib Sources/DiffIndex
-Hit http://ftp.uk.debian.org sid/non-free Sources/DiffIndex
-Hit http://ftp.uk.debian.org sid/main hurd-i386 Packages/DiffIndex
-Hit http://ftp.uk.debian.org sid/contrib hurd-i386 Packages/DiffIndex
-Hit http://ftp.uk.debian.org sid/non-free hurd-i386 Packages/DiffIndex
-Ign http://ftp.uk.debian.org sid/contrib TranslationIndex
-Hit http://ftp.uk.debian.org sid/main TranslationIndex
-Ign http://ftp.uk.debian.org sid/non-free TranslationIndex
+Ign http://incoming.debian.org InRelease
+Hit http://ftp.uk.debian.org unstable/main Sources/DiffIndex
+Get:1 http://incoming.debian.org Release.gpg [836 B]
Hit http://ftp.debian-ports.org unreleased/main hurd-i386 Packages
Ign http://ftp.debian-ports.org unreleased/main TranslationIndex
-Ign http://ftp.uk.debian.org sid/contrib Translation-en
-Hit http://incoming.debian.org Sources
-Ign http://ftp.uk.debian.org sid/non-free Translation-en
+Get:2 http://incoming.debian.org Release [1604 B]
Ign http://ftp.debian-ports.org unreleased/main Translation-en
-Hit http://incoming.debian.org Packages
+Hit http://ftp.uk.debian.org unstable/contrib Sources/DiffIndex
+Hit http://ftp.uk.debian.org unstable/non-free Sources/DiffIndex
+Hit http://ftp.uk.debian.org unstable/main hurd-i386 Packages/DiffIndex
+Hit http://ftp.uk.debian.org unstable/main TranslationIndex
+Get:3 http://incoming.debian.org Sources [50.0 kB]
+Hit http://ftp.uk.debian.org experimental/main Sources/DiffIndex
+Hit http://ftp.uk.debian.org experimental/contrib Sources/DiffIndex
+Hit http://ftp.uk.debian.org experimental/non-free Sources/DiffIndex
+Get:4 http://incoming.debian.org Packages [773 kB]
Ign http://incoming.debian.org Translation-en
+Fetched 824 kB in 2min 24s (5708 B/s)
Reading package lists...
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -81,11 +80,11 @@ Building dependency tree...
Reading state information...
NOTICE: 'tabix' packaging is maintained in the 'Git' version control system at:
git://git.debian.org/debian-med/tabix.git
-Need to get 50.4 kB of source archives.
-Get:1 http://ftp.uk.debian.org/debian/ sid/main tabix 0.2.3-1 (dsc) [1882 B]
-Get:2 http://ftp.uk.debian.org/debian/ sid/main tabix 0.2.3-1 (tar) [46.4 kB]
-Get:3 http://ftp.uk.debian.org/debian/ sid/main tabix 0.2.3-1 (diff) [2130 B]
-Fetched 50.4 kB in 0s (140 kB/s)
+Need to get 58.4 kB of source archives.
+Get:1 http://incoming.debian.org/buildd-unstable/ tabix 0.2.4-1 (dsc) [1882 B]
+Get:2 http://incoming.debian.org/buildd-unstable/ tabix 0.2.4-1 (tar) [54.2 kB]
+Get:3 http://incoming.debian.org/buildd-unstable/ tabix 0.2.4-1 (diff) [2322 B]
+Fetched 58.4 kB in 0s (59.6 kB/s)
Download complete and in download only mode
Check arch
@@ -100,38 +99,91 @@ Build-Depends: cdbs, debhelper (>= 8), zlib1g-dev
Checking for already installed source dependencies...
cdbs: missing
-debhelper: already installed (8.1.2 >= 8 is satisfied)
-zlib1g-dev: already installed (1:1.2.3.4.dfsg-3)
+debhelper: missing
+Using default version 8.1.3
+zlib1g-dev: missing
Checking for source dependency conflicts...
-Installing positive dependencies: cdbs
+Installing positive dependencies: cdbs debhelper zlib1g-dev
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
- libboost-iostreams1.42.0 libusb-0.1-4p
+ libboost-iostreams1.42.0 libssl1.0.0
Use 'apt-get autoremove' to remove them.
+The following extra packages will be installed:
+ file gettext gettext-base html2text intltool-debian libcroco3 libexpat1
+ libglib2.0-0 libmagic1 libunistring0 libxml2 po-debconf
Suggested packages:
- devscripts doc-base
+ devscripts doc-base dh-make gettext-doc libmail-box-perl
Recommended packages:
- autotools-dev
+ autotools-dev autopoint libglib2.0-data shared-mime-info xml-core
+ libmail-sendmail-perl
The following NEW packages will be installed:
- cdbs
-0 upgraded, 1 newly installed, 0 to remove and 62 not upgraded.
-Need to get 0 B/1268 kB of archives.
-After this operation, 1757 kB of additional disk space will be used.
+ cdbs debhelper file gettext gettext-base html2text intltool-debian libcroco3
+ libexpat1 libglib2.0-0 libmagic1 libunistring0 libxml2 po-debconf zlib1g-dev
+0 upgraded, 15 newly installed, 0 to remove and 42 not upgraded.
+Need to get 0 B/7891 kB of archives.
+After this operation, 22.1 MB of additional disk space will be used.
WARNING: The following packages cannot be authenticated!
- cdbs
+ libmagic1 file gettext-base libxml2 html2text libglib2.0-0 libcroco3
+ libexpat1 libunistring0 gettext intltool-debian po-debconf debhelper cdbs
+ zlib1g-dev
+debconf: delaying package configuration, since apt-utils is not installed
Authentication warning overridden.
+Selecting previously deselected package libmagic1.
+(Reading database ... 11575 files and directories currently installed.)
+Unpacking libmagic1 (from .../libmagic1_5.03-5+b1_hurd-i386.deb) ...
+Selecting previously deselected package file.
+Unpacking file (from .../file_5.03-5+b1_hurd-i386.deb) ...
+Selecting previously deselected package gettext-base.
+Unpacking gettext-base (from .../gettext-base_0.18.1.1-3_hurd-i386.deb) ...
+Selecting previously deselected package libxml2.
+Unpacking libxml2 (from .../libxml2_2.7.8.dfsg-2_hurd-i386.deb) ...
+Selecting previously deselected package html2text.
+Unpacking html2text (from .../html2text_1.3.2a-15+b1_hurd-i386.deb) ...
+Selecting previously deselected package libglib2.0-0.
+Unpacking libglib2.0-0 (from .../libglib2.0-0_2.28.4-1_hurd-i386.deb) ...
+Selecting previously deselected package libcroco3.
+Unpacking libcroco3 (from .../libcroco3_0.6.2-1_hurd-i386.deb) ...
+Selecting previously deselected package libexpat1.
+Unpacking libexpat1 (from .../libexpat1_2.0.1-7_hurd-i386.deb) ...
+Selecting previously deselected package libunistring0.
+Unpacking libunistring0 (from .../libunistring0_0.9.3-3_hurd-i386.deb) ...
+Selecting previously deselected package gettext.
+Unpacking gettext (from .../gettext_0.18.1.1-3_hurd-i386.deb) ...
+Selecting previously deselected package intltool-debian.
+Unpacking intltool-debian (from .../intltool-debian_0.35.0+20060710.1_all.deb) ...
+Selecting previously deselected package po-debconf.
+Unpacking po-debconf (from .../po-debconf_1.0.16+nmu1_all.deb) ...
+Selecting previously deselected package debhelper.
+Unpacking debhelper (from .../debhelper_8.1.3_all.deb) ...
Selecting previously deselected package cdbs.
-(Reading database ... 15235 files and directories currently installed.)
Unpacking cdbs (from .../archives/cdbs_0.4.92_all.deb) ...
+Selecting previously deselected package zlib1g-dev.
+Unpacking zlib1g-dev (from .../zlib1g-dev_1%3a1.2.3.4.dfsg-3_hurd-i386.deb) ...
Processing triggers for man-db ...
+Processing triggers for install-info ...
+Setting up libmagic1 (5.03-5+b1) ...
+Setting up file (5.03-5+b1) ...
+Setting up gettext-base (0.18.1.1-3) ...
+Setting up libxml2 (2.7.8.dfsg-2) ...
+Setting up html2text (1.3.2a-15+b1) ...
+Setting up libglib2.0-0 (2.28.4-1) ...
+No schema files found: doing nothing.
+Setting up libcroco3 (0.6.2-1) ...
+Setting up libexpat1 (2.0.1-7) ...
+Setting up libunistring0 (0.9.3-3) ...
+Setting up gettext (0.18.1.1-3) ...
+Setting up intltool-debian (0.35.0+20060710.1) ...
+Setting up po-debconf (1.0.16+nmu1) ...
+Setting up debhelper (8.1.3) ...
Setting up cdbs (0.4.92) ...
+Setting up zlib1g-dev (1:1.2.3.4.dfsg-3) ...
Removing negative dependencies:
Checking correctness of source dependencies...
Kernel: GNU 0.3 hurd-i386 (i686-AT386)
-Toolchain package versions: libc0.3-dev_2.11.2-13 dpkg-dev_1.15.8.10 hurd-dev_20110303-1~1 gnumach-dev_2:1.3.99.dfsg.git20100732-1 gcc-4.4_4.4.5-10 g++-4.4_4.4.5-10 binutils_2.21.0.20110302-2 libstdc++6-4.4-dev_4.4.5-10 libstdc++6_4.5.2-4
-Package versions: adduser_3.112+nmu1 apt_0.8.11.5+b1 apt-utils_0.8.11.5+b1 autoconf_2.67-2 automake1.9_1.9.6+nogfdl-3.1 autotools-dev_20100122.1 base-files_5.9 base-passwd_3.5.22 bash_4.1-3+hurd.1 binutils_2.21.0.20110302-2 bsdmainutils_8.0.13 bsdutils_1:2.16.2-0 build-essential_11.5 bzip2_1.0.5-6 cdbs_0.4.92 coreutils_8.5-1 cpp_4:4.4.5-4 cpp-4.4_4.4.5-10 cron_3.0pl1-115 dash_0.5.5.1-7 debconf_1.5.35 debconf-english_1.5.35 debfoster_2.6-2 debhelper_8.1.2 debian-archive-keyring_2010.08.28 debian-ports-archive-keyring_2011.01.12 debianutils_3.4.1 deborphan_1.7.28 dialog_1.1-20100428-1 diffstat_1.54-1 diffutils_1:3.0-1 dpkg_1.15.8.5 dpkg-dev_1.15.8.10 e2fslibs_1.41.12-2 e2fsprogs_1.41.12-2 fakeroot_1.12.4 file_5.03-5+b1 findutils_4.4.2-1 fontconfig_2.8.0-2.1 fontconfig-config_2.8.0-2.1 g++_4:4.4.4-2 g++-4.4_4.4.5-10 gawk_1:3.1.7.dfsg-5 gcc_4:4.4.5-4 gcc-4.4_4.4.5-10 gcc-4.4-base_4.4.5-10 gcc-4.5-base_4.5.2-4 gettext_0.18.1.1-3 gettext-base_0.18.1.1-3 gfortran-4.4_4.4.5-10 gnumach-dev_2:1.3.99.dfsg.git20100732-1 gnupg_1.4.10-4 gpgv_1.4.10-4 grep_2.6.3-3 groff-base_1.21-4 gzip_1.3.12-9 hostname_3.04 html2text_1.3.2a-15+b1 hurd_20110303-1~1 hurd-dev_20110303-1~1 initscripts_2.88dsf-12 insserv_1.14.0-2 install-info_4.13a.dfsg.1-5 intltool-debian_0.35.0+20060710.1 libacl1_2.2.47-3 libapt-pkg-dev_0.8.11.5+b1 libattr1_1:2.4.44-2 libblkid1_2.16.2-0 libboost-iostreams1.42.0_1.42.0-4 libbsd0_0.2.0-1 libbz2-1.0_1.0.5-6 libc-bin_2.11.2-13 libc-dev-bin_2.11.2-13 libc0.3_2.11.2-13 libc0.3-dev_2.11.2-13 libc0.3-xen_2.11.2-13 libcomerr2_1.41.12-2 libcroco3_0.6.2-1 libdb4.7_4.7.25-12 libdb4.8_4.8.30-5 libdigest-sha1-perl_2.13-1 libdpkg-perl_1.15.8.10 libept-dev_1.0.3+b2 libept1_1.0.3+b2 libexpat1_2.0.1-7 libfontconfig1_2.8.0-2.1 libfreetype6_2.4.4-1 libgc-dev_1:7.1-7 libgc1c2_1:7.1-7 libgcc1_1:4.4.5-10 libgcrypt11_1.4.6-5 libgdbm3_1.8.3-9 libgfortran3_4.4.5-10 libglib2.0-0_2.28.2-1 libglib2.0-data_2.28.0-1 libgmp10_2:5.0.1+dfsg-6 libgmp3c2_2:4.3.2+dfsg-1+b1 libgmpxx4ldbl_2:5.0.1+dfsg-6 libgnutls26_2.10.4-2 libgomp1_4.4.5-10 libgpg-error0_1.10-0.3 libidn11_1.20-1 libldap-2.4-2_2.4.17-1 liblocale-gettext-perl_1.05-6 liblzma2_5.0.0-2 libmagic1_5.03-5+b1 libmpfr4_3.0.0-9 libncurses5_5.8+20110307-1 libncursesw5_5.8+20110307-1 libpam-modules_1.1.1-6 libpam-runtime_1.1.1-6 libpam0g_1.1.2-2 libparted0debian1_2.3-3+hurd.1 libpcre3_8.12-3+b1 libpcre3-dev_8.12-3+b1 libpcrecpp0_8.12-3+b1 libpng12-0_1.2.44-2 libpopt0_1.16-1 libpthread-stubs0_0.3-2 libpthread-stubs0-dev_0.3-2 libreadline6_6.1-3 libsasl2-2_2.1.23.dfsg1-7 libsasl2-modules_2.1.23.dfsg1-7 libslang2_2.1.4-3 libss2_1.41.12-2 libssl0.9.8_0.9.8o-5 libstdc++6_4.5.2-4 libstdc++6-4.4-dev_4.4.5-10 libtagcoll2-dev_2.0.11-1.1 libtasn1-3_2.9-2 libtimedate-perl_1.2000-1 libunistring0_0.9.3-3 libusb-0.1-4p_2:0.1.12-13+hurd.1 libuuid1_2.16.2-0 libwibble-dev_0.1.26-1 libwrap0_7.6.dbs-8 libxapian-dev_1.2.3-2 libxapian22_1.2.3-2 libxml2_2.7.8.dfsg-2 libxml2-dev_2.7.8.dfsg-2 libxslt1-dev_1.1.26-7 libxslt1.1_1.1.26-7 lsb-base_3.2-25 lynx-cur_2.8.8dev.8-1 m4_1.4.13-2+b1 make_3.81-8 man-db_2.5.7-4 mawk_1.3.3-15 mime-support_3.48-1 ncurses-base_5.7+20100313-4 ncurses-bin_5.8+20110307-1 netbase_4.42 netcat-traditional_1.10-38 passwd_1:4.1.4.2+svn3283-2 patch_2.6-3 perl_5.10.1-17 perl-base_5.10.1-17 perl-modules_5.10.1-17 pkg-config_0.25-1 po-debconf_1.0.16 procps_1:3.2.7-11 psmisc_22.3-1 quilt_0.48-7 random-egd_0.5-0+hurd.1 readline-common_6.1-3 sed_4.2.1-7 sensible-utils_0.0.4 sgml-base_1.26+nmu1 shared-mime-info_0.71-3 sudo_1.7.2p7-1 sysv-rc_2.88dsf-12 sysvinit_2.88dsf-12 sysvinit-utils_2.88dsf-12 tar_1.23-3 ttf-dejavu-core_2.31-1 type-handling_0.2.23 tzdata_2010m-1 ucf_3.0025+nmu1 util-linux_2.16.2-0 xml-core_0.13 xz-utils_4.999.9beta+20100810-1 zlib1g_1:1.2.3.4.dfsg-3 zlib1g-dev_1:1.2.3.4.dfsg-3
+Toolchain package versions: libc0.3-dev_2.11.2-13 dpkg-dev_1.16.0.1 hurd-dev_20110303-1~1 gnumach-dev_2:1.3.99.dfsg.git20100732-1 gcc-4.4_4.4.5-10 g++-4.4_4.4.5-10 binutils_2.21.0.20110327-2 libstdc++6-4.4-dev_4.4.5-10 libstdc++6_4.5.2-4
+Package versions: adduser_3.112+nmu2 apt_0.8.13.2 base-files_6.1 base-passwd_3.5.22 bash_4.1-3+hurd.1 binutils_2.21.0.20110327-2 bsdmainutils_8.2.2 bsdutils_1:2.16.2-0 build-essential_11.5 bzip2_1.0.5-6 ca-certificates_20090814+nmu2 cdbs_0.4.92 coreutils_8.5-1 cpp_4:4.4.5-7 cpp-4.4_4.4.5-10 dash_0.5.5.1-7.4 debconf_1.5.38 debconf-english_1.5.38 debfoster_2.6-2 debhelper_8.1.3 debian-archive-keyring_2010.08.28 debian-ports-archive-keyring_2011.01.12 debianutils_3.4.3 diffutils_1:3.0-1 dpkg_1.15.8.10 dpkg-dev_1.16.0.1 e2fslibs_1.41.12-2 e2fsprogs_1.41.12-2 fakeroot_1.12.4 file_5.03-5+b1 findutils_4.4.2-1+b1 g++_4:4.4.5-2 g++-4.4_4.4.5-10 gawk_1:3.1.7.dfsg-5 gcc_4:4.4.5-4 gcc-4.2-base_4.2.4-6+b1 gcc-4.4_4.4.5-10 gcc-4.4-base_4.4.5-10 gcc-4.5-base_4.5.2-4 gettext_0.18.1.1-3 gettext-base_0.18.1.1-3 gfortran_4:4.4.5-4 gfortran-4.4_4.4.5-10 gnumach-dev_2:1.3.99.dfsg.git20100732-1 gnupg_1.4.10-4 gnupg-curl_1.4.10-4 gpgv_1.4.10-4 grep_2.6.3-3 groff-base_1.21-5 gzip_1.3.12-9 hostname_3.05 html2text_1.3.2a-15+b1 hurd_20110319-2 hurd-dev_20110303-1~1 ifupdown_0.6.9+hurd.1 inetutils-tools_2:1.8-3 initscripts_2.88dsf-13.1 insserv_1.14.0-2 install-info_4.13a.dfsg.1-6 intltool-debian_0.35.0+20060710.1 libacl1_2.2.47-3 libattr1_1:2.4.44-2 libblkid1_2.16.2-0 libboost-iostreams1.42.0_1.42.0-4 libbz2-1.0_1.0.5-6 libc-bin_2.11.2-13 libc-dev-bin_2.11.2-13 libc0.3_2.11.2-13 libc0.3-dev_2.11.2-13 libc0.3-xen_2.11.2-13 libcomerr2_1.41.12-2 libcroco3_0.6.2-1 libcurl3-gnutls_7.21.4-1 libdb4.7_4.7.25-12 libdb4.8_4.8.30-5 libdpkg-perl_1.16.0.1 libexpat1_2.0.1-7 libfribidi0_0.19.2-1 libgcc1_1:4.4.5-10 libgcrypt11_1.4.6-5 libgdbm3_1.8.3-9 libgfortran3_4.4.5-10 libglib2.0-0_2.28.4-1 libgmp10_2:5.0.1+dfsg-7 libgmp3c2_2:4.3.2+dfsg-1 libgmpxx4ldbl_2:5.0.1+dfsg-7 libgnutls26_2.10.4-2 libgomp1_4.4.5-10 libgpg-error0_1.10-0.3 libident_0.22-3 libidn11_1.20-1 libldap-2.4-2_2.4.17-1 liblocale-gettext-perl_1.05-6 liblzma2_5.0.0-2 liblzo2-2_2.04-1 libmagic1_5.03-5+b1 libmpfr4_3.0.0-9 libncurses5_5.8+20110307-1 libncursesw5_5.8+20110307-1 libnewt0.52_0.52.11-2 libpam-modules_1.1.1-6.1 libpam-runtime_1.1.1-6.1 libpam0g_1.1.2-2 libparted0debian1_2.3-3+hurd.1 libpcre3_8.12-3+b1 libpipeline1_1.2.0-1 libpng12-0_1.2.44-2 libpopt0_1.16-1 libpthread-stubs0_0.3-2 libpthread-stubs0-dev_0.3-2 libreadline6_6.1-3 libsasl2-2_2.1.23.dfsg1-8 libsasl2-modules_2.1.23.dfsg1-8 libslang2_2.2.3-3 libss2_1.41.12-2 libssl0.9.8_0.9.8o-5 libssl1.0.0_1.0.0d-1 libstdc++6_4.5.2-4 libstdc++6-4.4-dev_4.4.5-10 libsysfs2_2.1.0+repack-1 libtasn1-3_2.9-2 libtext-charwidth-perl_0.04-6 libtext-iconv-perl_1.7-2 libtext-wrapi18n-perl_0.06-7 libtimedate-perl_1.2000-1 libunistring0_0.9.3-3 libusb-0.1-4p_2:0.1.12-13+hurd.1 libuuid1_2.16.2-0 libwrap0_7.6.dbs-8 libxml2_2.7.8.dfsg-2 lsb-base_3.2-27 make_3.81-8 man-db_2.5.9-4 mawk_1.3.3-15 ncurses-base_5.7+20100313-5 ncurses-bin_5.8+20110307-1 netbase_4.45 netcat-traditional_1.10-39 openssl_0.9.8o-4 passwd_1:4.1.4.2+svn3283-2 patch_2.6-3 perl_5.10.1-19 perl-base_5.10.1-19 perl-modules_5.10.1-19 po-debconf_1.0.16+nmu1 procps_1:3.2.8-10 psmisc_22.3-1 readline-common_6.1-3 sed_4.2.1-8 sensible-utils_0.0.6 sysv-rc_2.88dsf-13.1 sysvinit_2.88dsf-13.1 sysvinit-utils_2.88dsf-13.1 tar_1.25-2 tzdata_2011a-1 util-linux_2.16.2-0 wget_1.11.4-4 whiptail_0.52.11-2 xz-utils_5.0.0-2 zlib1g_1:1.2.3.4.dfsg-3 zlib1g-dev_1:1.2.3.4.dfsg-3
┌──────────────────────────────────────────────────────────────────────────────┐
│ Build │
@@ -143,12 +195,12 @@ Unpack source
dpkg-source: warning: -sn is not a valid option for Dpkg::Source::Package::V3::quilt
gpgv: keyblock resource `/home/buildd/.gnupg/trustedkeys.gpg': file open error
-gpgv: Signature made Wed Jan 19 13:19:58 2011 UTC using RSA key ID 2295D502
+gpgv: Signature made Tue Apr 12 08:22:29 2011 UTC using RSA key ID 2295D502
gpgv: Can't check signature: public key not found
-dpkg-source: warning: failed to verify signature on ./tabix_0.2.3-1.dsc
-dpkg-source: info: extracting tabix in tabix-0.2.3
-dpkg-source: info: unpacking tabix_0.2.3.orig.tar.bz2
-dpkg-source: info: unpacking tabix_0.2.3-1.debian.tar.gz
+dpkg-source: warning: failed to verify signature on ./tabix_0.2.4-1.dsc
+dpkg-source: info: extracting tabix in tabix-0.2.4
+dpkg-source: info: unpacking tabix_0.2.4.orig.tar.bz2
+dpkg-source: info: unpacking tabix_0.2.4-1.debian.tar.gz
Check disc space
────────────────
@@ -163,40 +215,41 @@ dpkg-buildpackage: export CXXFLAGS from dpkg-buildflags (origin: vendor): -g -O2
dpkg-buildpackage: export FFLAGS from dpkg-buildflags (origin: vendor): -g -O2
dpkg-buildpackage: export LDFLAGS from dpkg-buildflags (origin: vendor):
dpkg-buildpackage: source package tabix
-dpkg-buildpackage: source version 0.2.3-1
- dpkg-source --before-build tabix-0.2.3
+dpkg-buildpackage: source version 0.2.4-1
+ dpkg-source --before-build tabix-0.2.4
dpkg-buildpackage: host architecture hurd-i386
/usr/bin/fakeroot debian/rules clean
test -x debian/rules
dh_testroot
rm -f debian/stamp-makefile-build debian/stamp-makefile-install
/usr/bin/make -C . CFLAGS="-g -O2 -g -O2" CXXFLAGS="-g -O2 -g -O2" CPPFLAGS="" LDFLAGS="" -k clean
-make[1]: Entering directory `/build/buildd-tabix_0.2.3-1-hurd-i386-nmXD5q/tabix-0.2.3'
-make[2]: Entering directory `/build/buildd-tabix_0.2.3-1-hurd-i386-nmXD5q/tabix-0.2.3'
+make[1]: Entering directory `/build/buildd-tabix_0.2.4-1-hurd-i386-nrTxuR/tabix-0.2.4'
+make[2]: Entering directory `/build/buildd-tabix_0.2.4-1-hurd-i386-nrTxuR/tabix-0.2.4'
rm -fr gmon.out *.o a.out *.dSYM tabix bgzip *~ *.a tabix.aux tabix.log tabix.pdf *.class libtabix.*.dylib libtabix.so*
-make[2]: Leaving directory `/build/buildd-tabix_0.2.3-1-hurd-i386-nmXD5q/tabix-0.2.3'
-make[1]: Leaving directory `/build/buildd-tabix_0.2.3-1-hurd-i386-nmXD5q/tabix-0.2.3'
+make[2]: Leaving directory `/build/buildd-tabix_0.2.4-1-hurd-i386-nrTxuR/tabix-0.2.4'
+make[1]: Leaving directory `/build/buildd-tabix_0.2.4-1-hurd-i386-nrTxuR/tabix-0.2.4'
dh_clean
debian/rules build
/usr/share/cdbs/1/rules/buildcore.mk:109: WARNING: DEB_COMPRESS_EXCLUDE is a deprecated variable
test -x debian/rules
mkdir -p "."
/usr/bin/make -C . CFLAGS="-g -O2 -g -O2" CXXFLAGS="-g -O2 -g -O2" CPPFLAGS="" LDFLAGS=""
-make[1]: Entering directory `/build/buildd-tabix_0.2.3-1-hurd-i386-nmXD5q/tabix-0.2.3'
-make[2]: Entering directory `/build/buildd-tabix_0.2.3-1-hurd-i386-nmXD5q/tabix-0.2.3'
+make[1]: Entering directory `/build/buildd-tabix_0.2.4-1-hurd-i386-nrTxuR/tabix-0.2.4'
+make[2]: Entering directory `/build/buildd-tabix_0.2.4-1-hurd-i386-nrTxuR/tabix-0.2.4'
gcc -c -g -O2 -g -O2 -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE bgzf.c -o bgzf.o
gcc -c -g -O2 -g -O2 -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE kstring.c -o kstring.o
gcc -c -g -O2 -g -O2 -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE knetfile.c -o knetfile.o
gcc -c -g -O2 -g -O2 -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE index.c -o index.o
-ar -cru libtabix.a bgzf.o kstring.o knetfile.o index.o
+gcc -c -g -O2 -g -O2 -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE bedidx.c -o bedidx.o
+ar -cru libtabix.a bgzf.o kstring.o knetfile.o index.o bedidx.o
gcc -c -g -O2 -g -O2 -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE main.c -o main.o
gcc -g -O2 -g -O2 -o tabix main.o -lm -lz -L. -ltabix
gcc -c -g -O2 -g -O2 -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE bgzip.c -o bgzip.o
gcc -g -O2 -g -O2 -o bgzip bgzip.o bgzf.o knetfile.o -lz
-make[2]: Leaving directory `/build/buildd-tabix_0.2.3-1-hurd-i386-nmXD5q/tabix-0.2.3'
- /usr/bin/fakeroot debian/rules binary-arch
-make[1]: Leaving directory `/build/buildd-tabix_0.2.3-1-hurd-i386-nmXD5q/tabix-0.2.3'
+make[2]: Leaving directory `/build/buildd-tabix_0.2.4-1-hurd-i386-nrTxuR/tabix-0.2.4'
+make[1]: Leaving directory `/build/buildd-tabix_0.2.4-1-hurd-i386-nrTxuR/tabix-0.2.4'
touch debian/stamp-makefile-build
+ /usr/bin/fakeroot debian/rules binary-arch
DEB_MAKE_CHECK_TARGET unset, not running checks
test -x debian/rules
dh_testroot
@@ -239,58 +292,59 @@ dpkg-shlibdeps: warning: dependency on libm.so.6 could be avoided if "debian/tab
dh_gencontrol -ptabix
dh_md5sums -ptabix
dh_builddeb -ptabix
-dpkg-deb: building package `tabix' in `../tabix_0.2.3-1_hurd-i386.deb'.
- dpkg-genchanges -B -mDebian GNU/Hurd Build Daemon <buildd_hurd-i386-mozart at buildd.debian.org> >../tabix_0.2.3-1_hurd-i386.changes
+dpkg-deb: building package `tabix' in `../tabix_0.2.4-1_hurd-i386.deb'.
+ dpkg-genchanges -B -mhurd-i386 Build Daemon <buildd_hurd-i386-rossini at buildd.debian.org> >../tabix_0.2.4-1_hurd-i386.changes
dpkg-genchanges: arch-specific upload - not including arch-independent packages
dpkg-genchanges: binary-only upload - not including any source code
- dpkg-source --after-build tabix-0.2.3
+ dpkg-source --after-build tabix-0.2.4
dpkg-buildpackage: binary only upload (no source included)
────────────────────────────────────────────────────────────────────────────────
-Build finished at 20110320-1122
+Build finished at 20110412-1100
-tabix_0.2.3-1_hurd-i386.changes:
+tabix_0.2.4-1_hurd-i386.changes:
Format: 1.8
-Date: Wed, 19 Jan 2011 22:16:39 +0900
+Date: Tue, 12 Apr 2011 17:15:33 +0900
Source: tabix
Binary: tabix
Architecture: hurd-i386
-Version: 0.2.3-1
+Version: 0.2.4-1
Distribution: sid
Urgency: low
-Maintainer: Debian GNU/Hurd Build Daemon <buildd_hurd-i386-mozart at buildd.debian.org>
+Maintainer: hurd-i386 Build Daemon <buildd_hurd-i386-rossini at buildd.debian.org>
Changed-By: Charles Plessy <plessy at debian.org>
Description:
tabix - generic indexer for TAB-delimited genome position files
-Closes: 606446
Changes:
- tabix (0.2.3-1) unstable; urgency=low
+ tabix (0.2.4-1) unstable; urgency=low
.
- * Initial release (Closes: #606446)
+ * New upstream release.
+ * Incremented Standards-Version to reflect conformance with Policy 3.9.2
+ (debian/control).
Checksums-Sha1:
- 6276c74732accd4cb83caaf3318b9b18702f2f78 50438 tabix_0.2.3-1_hurd-i386.deb
+ 86e9ec8164bc5de03ddd6d32aff1c9fe01e3de9f 55202 tabix_0.2.4-1_hurd-i386.deb
Checksums-Sha256:
- bbafd7eb3700865b03eb52df517290832045b7ec42e508d9833802946ce010e2 50438 tabix_0.2.3-1_hurd-i386.deb
+ e9680fc26e5e1ea0a39fb0f9fb1c69c583b3759e6db568da98eb8b864b574ed0 55202 tabix_0.2.4-1_hurd-i386.deb
Files:
- 13fd41a50067e865e0401870f62c7f03 50438 science optional tabix_0.2.3-1_hurd-i386.deb
+ 3d952f0c9554a884cbd25b6ba06cd688 55202 science optional tabix_0.2.4-1_hurd-i386.deb
┌──────────────────────────────────────────────────────────────────────────────┐
│ Package contents │
└──────────────────────────────────────────────────────────────────────────────┘
-tabix_0.2.3-1_hurd-i386.deb
+tabix_0.2.4-1_hurd-i386.deb
───────────────────────────
new debian package, version 2.0.
- size 50438 bytes: control archive= 966 bytes.
- 785 bytes, 16 lines control
+ size 55202 bytes: control archive= 971 bytes.
+ 792 bytes, 16 lines control
587 bytes, 9 lines md5sums
Package: tabix
- Version: 0.2.3-1
+ Version: 0.2.4-1
Architecture: hurd-i386
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
- Installed-Size: 148
- Depends: libc0.3 (>= 2.11), zlib1g (>= 1:1.1.4)
+ Installed-Size: 156
+ Depends: libc0.3 (>= 2.11), zlib1g (>= 1:1.2.3.3.dfsg)
Section: science
Priority: optional
Homepage: http://samtools.sourceforge.net/tabix.shtml
@@ -302,25 +356,25 @@ tabix_0.2.3-1_hurd-i386.deb
chromosomal coordinates. Fast data retrieval also works over network if an URI
is given as a file name.
-drwxr-xr-x root/root 0 2011-03-20 11:21 ./
-drwxr-xr-x root/root 0 2011-03-20 11:21 ./usr/
-drwxr-xr-x root/root 0 2011-03-20 11:21 ./usr/share/
-drwxr-xr-x root/root 0 2011-03-20 11:20 ./usr/share/doc/
-drwxr-xr-x root/root 0 2011-03-20 11:21 ./usr/share/doc/tabix/
--rw-r--r-- root/root 1346 2011-01-19 13:03 ./usr/share/doc/tabix/copyright
-drwxr-xr-x root/root 0 2011-03-20 11:21 ./usr/share/doc/tabix/examples/
+drwxr-xr-x root/root 0 2011-04-12 11:00 ./
+drwxr-xr-x root/root 0 2011-04-12 11:00 ./usr/
+drwxr-xr-x root/root 0 2011-04-12 10:59 ./usr/share/
+drwxr-xr-x root/root 0 2011-04-12 10:59 ./usr/share/doc/
+drwxr-xr-x root/root 0 2011-04-12 11:00 ./usr/share/doc/tabix/
+-rw-r--r-- root/root 1473 2011-04-12 07:17 ./usr/share/doc/tabix/copyright
+drwxr-xr-x root/root 0 2011-04-12 10:59 ./usr/share/doc/tabix/examples/
-rw-r--r-- root/root 3778 2010-12-08 17:34 ./usr/share/doc/tabix/examples/example.gtf.gz
--rw-r--r-- root/root 260 2010-12-08 17:34 ./usr/share/doc/tabix/examples/example.gtf.gz.tbi
--rw-r--r-- root/root 2920 2010-12-08 17:38 ./usr/share/doc/tabix/changelog.gz
--rw-r--r-- root/root 944 2010-12-08 17:38 ./usr/share/doc/tabix/NEWS.gz
--rw-r--r-- root/root 154 2011-01-19 13:16 ./usr/share/doc/tabix/changelog.Debian.gz
-drwxr-xr-x root/root 0 2011-03-20 11:21 ./usr/share/man/
-drwxr-xr-x root/root 0 2011-03-20 11:21 ./usr/share/man/man1/
--rw-r--r-- root/root 1716 2011-03-20 11:21 ./usr/share/man/man1/tabix.1.gz
-drwxr-xr-x root/root 0 2011-03-20 11:21 ./usr/bin/
--rwxr-xr-x root/root 52760 2011-03-20 11:21 ./usr/bin/tabix
--rwxr-xr-x root/root 22280 2011-03-20 11:21 ./usr/bin/bgzip
-lrwxr-xr-x root/root 0 2011-03-20 11:21 ./usr/share/man/man1/bgzip.1.gz -> tabix.1.gz
+-rw-r--r-- root/root 259 2011-04-10 19:21 ./usr/share/doc/tabix/examples/example.gtf.gz.tbi
+-rw-r--r-- root/root 3487 2011-04-10 19:21 ./usr/share/doc/tabix/changelog.gz
+-rw-r--r-- root/root 1169 2011-04-10 19:21 ./usr/share/doc/tabix/NEWS.gz
+-rw-r--r-- root/root 262 2011-04-12 08:16 ./usr/share/doc/tabix/changelog.Debian.gz
+drwxr-xr-x root/root 0 2011-04-12 10:59 ./usr/share/man/
+drwxr-xr-x root/root 0 2011-04-12 11:00 ./usr/share/man/man1/
+-rw-r--r-- root/root 1834 2011-04-12 11:00 ./usr/share/man/man1/tabix.1.gz
+drwxr-xr-x root/root 0 2011-04-12 11:00 ./usr/bin/
+-rwxr-xr-x root/root 60952 2011-04-12 11:00 ./usr/bin/tabix
+-rwxr-xr-x root/root 22280 2011-04-12 11:00 ./usr/bin/bgzip
+lrwxr-xr-x root/root 0 2011-04-12 11:00 ./usr/share/man/man1/bgzip.1.gz -> tabix.1.gz
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -329,11 +383,34 @@ lrwxr-xr-x root/root 0 2011-03-20 11:21 ./usr/share/man/man1/bgzip.1.gz
Built successfully
────────────────────────────────────────────────────────────────────────────────
-Purging /home/buildd/build/chroot-sid/build/buildd-tabix_0.2.3-1-hurd-i386-nmXD5q
-(Reading database ... 15292 files and directories currently installed.)
+Purging /home/buildd/build/chroot-sid/build/buildd-tabix_0.2.4-1-hurd-i386-nrTxuR
+(Reading database ... 12465 files and directories currently installed.)
+Removing zlib1g-dev ...
Removing cdbs ...
+Removing debhelper ...
+Removing po-debconf ...
+Removing intltool-debian ...
+Removing gettext ...
+Removing file ...
+Purging configuration files for file ...
+Removing libexpat1 ...
+Purging configuration files for libexpat1 ...
+Removing html2text ...
+Purging configuration files for html2text ...
+Removing gettext-base ...
+Removing libunistring0 ...
+Purging configuration files for libunistring0 ...
+Removing libcroco3 ...
+Purging configuration files for libcroco3 ...
+Removing libmagic1 ...
+Purging configuration files for libmagic1 ...
+Removing libxml2 ...
+Purging configuration files for libxml2 ...
+Removing libglib2.0-0 ...
+Purging configuration files for libglib2.0-0 ...
Processing triggers for man-db ...
+Processing triggers for install-info ...
────────────────────────────────────────────────────────────────────────────────
-Finished at 20110320-1122
-Build needed 00:04:29, 1112k disc space
+Finished at 20110412-1100
+Build needed 00:07:34, 1248k disc space
diff --git a/i386.log b/i386.log
index 9651bbc..1842064 100644
--- a/i386.log
+++ b/i386.log
@@ -1,64 +1,68 @@
-From buildd at murphy.debian.org Wed Mar 16 10:57:22 2011
-Return-path: <buildd at murphy.debian.org>
-Received: from merikanto.debian.org ([2001:858:2:2:216:35ff:fec4:a49a])
+From buildd at biber.debian.org Tue Apr 12 09:46:06 2011
+Return-path: <buildd at biber.debian.org>
+Received: from kokkonen.debian.org ([2001:41b8:202:deb:216:35ff:fec4:6340])
from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
- CN=merikanto.debian.org,
- EMAIL=hostmaster at merikanto.debian.org (verified)
+ CN=kokkonen.debian.org,
+ EMAIL=hostmaster at kokkonen.debian.org (verified)
by grieg.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
- (Exim 4.69) (envelope-from <buildd at murphy.debian.org>)
- id 1PzoPq-0003Gl-9K
- for logs at buildd.debian.org; Wed, 16 Mar 2011 10:57:22 +0000
-Received: from murphy.debian.org ([70.103.162.31])
+ (Exim 4.69) (envelope-from <buildd at biber.debian.org>)
+ id 1Q9aAg-00038e-6N
+ for logs at buildd.debian.org; Tue, 12 Apr 2011 09:46:06 +0000
+Received: from biber.debian.org ([2001:648:2ffc:deb:214:22ff:feb2:1268])
from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
- CN=murphy.debian.org, EMAIL=hostmaster at murphy.debian.org (verified)
- by merikanto.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
- (Exim 4.69) (envelope-from <buildd at murphy.debian.org>)
- id 1PzoPm-000545-D7; Wed, 16 Mar 2011 10:57:18 +0000
-Received: from buildd by murphy.debian.org with local (Exim 4.69)
- (envelope-from <buildd at murphy.debian.org>)
- id 1PzoPk-0001ef-OB; Wed, 16 Mar 2011 10:57:16 +0000
-From: buildd on murphy <buildd at murphy.debian.org>
+ CN=biber.debian.org, EMAIL=hostmaster at biber.debian.org (verified)
+ by kokkonen.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
+ (Exim 4.69) (envelope-from <buildd at biber.debian.org>)
+ id 1Q9aAb-0001ap-Ln; Tue, 12 Apr 2011 09:46:01 +0000
+Received: from buildd by biber.debian.org with local (Exim 4.72)
+ (envelope-from <buildd at biber.debian.org>)
+ id 1Q9aAY-0002B7-G2; Tue, 12 Apr 2011 09:45:58 +0000
+Message-Id: <E1Q9aAY-0002B7-G2 at biber.debian.org>
+MIME-Version: 1.0
+Content-Transfer-Encoding: binary
+X-Mailer: MIME::Lite 3.027 (F2.77; B3.08; Q3.08)
+Date: Tue, 12 Apr 2011 09:45:58 +0000
+From: buildd on biber <buildd at biber.debian.org>
To: kurt at roeckx.be,logs at buildd.debian.org
-Subject: Log for successful build of tabix_0.2.3-1 on i386 (dist=sid)
-Content-Type: text/plain; charset=UTF-8
-Content-Transfer-Encoding: 8bit
-Message-Id: <E1PzoPk-0001ef-OB at murphy.debian.org>
-Date: Wed, 16 Mar 2011 10:57:16 +0000
+Subject: Log for successful build of tabix_0.2.4-1 on i386 (dist=sid)
+Key-Id: 44C3EAC7
Delivered-To: logs at buildd.debian.org
-sbuild (Debian sbuild) 0.60.5 (14 Nov 2010) on murphy.debian.org
+sbuild (Debian sbuild) 0.61.0 (23 Feb 2011) on biber.debian.org
╔══════════════════════════════════════════════════════════════════════════════╗
-║ tabix 0.2.3-1 (i386) 16 Mar 2011 10:56 ║
+║ tabix 0.2.4-1 (i386) 12 Apr 2011 09:44 ║
╚══════════════════════════════════════════════════════════════════════════════╝
Package: tabix
-Version: 0.2.3-1
+Version: 0.2.4-1
+Source Version: 0.2.4-1
Architecture: i386
-Chroot Build Dir: /var/lib/schroot/mount/sid-i386-sbuild-5563e941-a4f9-48ce-9fbd-ac1a3598416f/build/buildd-tabix_0.2.3-1-i386-6Rktiu
-Start Time: 20110316-1056
-Hit http://ftp.us.debian.org sid InRelease
-Hit http://incoming.debian.org sid InRelease
+Get:1 http://ftp.gr.debian.org unstable InRelease [151 kB]
+Get:2 http://ftp.gr.debian.org unstable/main Sources [5264 kB]
+Get:3 http://incoming.debian.org unstable InRelease [151 kB]
+Get:4 http://ftp.gr.debian.org unstable/contrib Sources [48.2 kB]
+Get:5 http://ftp.gr.debian.org unstable/non-free Sources [97.4 kB]
+Get:6 http://ftp.gr.debian.org unstable/main i386 Packages [7150 kB]
+Get:7 http://ftp.gr.debian.org unstable/contrib i386 Packages [62.6 kB]
+Ign http://ftp.gr.debian.org unstable/contrib TranslationIndex
+Get:8 http://ftp.gr.debian.org unstable/main TranslationIndex [2264 B]
+Ign http://ftp.gr.debian.org unstable/contrib Translation-en
Ign http://incoming.debian.org InRelease
-Hit http://incoming.debian.org Release.gpg
-Hit http://ftp.us.debian.org sid/main Sources/DiffIndex
-Hit http://incoming.debian.org sid/main Sources/DiffIndex
-Hit http://incoming.debian.org sid/contrib Sources/DiffIndex
-Hit http://incoming.debian.org sid/main i386 Packages/DiffIndex
-Hit http://incoming.debian.org sid/contrib i386 Packages/DiffIndex
-Ign http://incoming.debian.org sid/contrib TranslationIndex
-Hit http://incoming.debian.org sid/main TranslationIndex
-Hit http://ftp.us.debian.org sid/contrib Sources/DiffIndex
-Hit http://ftp.us.debian.org sid/main i386 Packages/DiffIndex
-Hit http://ftp.us.debian.org sid/contrib i386 Packages/DiffIndex
-Ign http://ftp.us.debian.org sid/contrib TranslationIndex
-Hit http://ftp.us.debian.org sid/main TranslationIndex
-Hit http://incoming.debian.org Release
-Hit http://incoming.debian.org Sources
-Hit http://incoming.debian.org Packages
-Ign http://incoming.debian.org sid/contrib Translation-en
-Ign http://ftp.us.debian.org sid/contrib Translation-en
+Get:9 http://incoming.debian.org Release.gpg [836 B]
+Get:10 http://incoming.debian.org unstable/main Sources [5265 kB]
+Get:11 http://incoming.debian.org unstable/contrib Sources [48.2 kB]
+Get:12 http://incoming.debian.org unstable/non-free Sources [97.4 kB]
+Get:13 http://incoming.debian.org unstable/main i386 Packages [7149 kB]
+Get:14 http://incoming.debian.org unstable/contrib i386 Packages [62.6 kB]
+Ign http://incoming.debian.org unstable/contrib TranslationIndex
+Get:15 http://incoming.debian.org unstable/main TranslationIndex [2264 B]
+Get:16 http://incoming.debian.org Release [1604 B]
+Get:17 http://incoming.debian.org Sources [49.0 kB]
+Get:18 http://incoming.debian.org Packages [775 kB]
+Ign http://incoming.debian.org unstable/contrib Translation-en
Ign http://incoming.debian.org Translation-en
+Fetched 26.4 MB in 18s (1443 kB/s)
Reading package lists...
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -79,29 +83,78 @@ Building dependency tree...
Reading state information...
NOTICE: 'tabix' packaging is maintained in the 'Git' version control system at:
git://git.debian.org/debian-med/tabix.git
-Need to get 50.4 kB of source archives.
-Get:1 http://incoming.debian.org/buildd-unstable/ tabix 0.2.3-1 (dsc) [1882 B]
-Get:2 http://incoming.debian.org/buildd-unstable/ tabix 0.2.3-1 (tar) [46.4 kB]
-Get:3 http://incoming.debian.org/buildd-unstable/ tabix 0.2.3-1 (diff) [2130 B]
-Fetched 50.4 kB in 0s (209 kB/s)
+Need to get 58.4 kB of source archives.
+Get:1 http://incoming.debian.org/buildd-unstable/ tabix 0.2.4-1 (dsc) [1882 B]
+Get:2 http://incoming.debian.org/buildd-unstable/ tabix 0.2.4-1 (tar) [54.2 kB]
+Get:3 http://incoming.debian.org/buildd-unstable/ tabix 0.2.4-1 (diff) [2322 B]
+Fetched 58.4 kB in 0s (62.2 kB/s)
Download complete and in download only mode
Check arch
──────────
-** Using build dependencies supplied by package:
-Build-Depends: cdbs, debhelper (>= 8), zlib1g-dev
┌──────────────────────────────────────────────────────────────────────────────┐
-│ Install build dependencies (internal resolver) │
+│ Install core build dependencies (internal resolver) │
└──────────────────────────────────────────────────────────────────────────────┘
-Checking for already installed source dependencies...
+Build-Depends: build-essential, fakeroot
+Checking for already installed dependencies...
+build-essential: already installed (11.5)
+fakeroot: already installed (1.15.1-1)
+Checking for dependency conflicts...
+Installing positive dependencies:
+Reading package lists...
+Building dependency tree...
+Reading state information...
+0 upgraded, 0 newly installed, 0 to remove and 8 not upgraded.
+Removing negative dependencies:
+Reading package lists...
+Building dependency tree...
+Reading state information...
+0 upgraded, 0 newly installed, 0 to remove and 8 not upgraded.
+Checking correctness of dependencies...
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Install tabix build dependencies (internal resolver) │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+Build-Depends: base-files, base-passwd, bash, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, ncurses-base, ncurses-bin, perl-base, sed, login, sysvinit-utils, sysvinit, tar, bsdutils, mount, util-linux, libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), cdbs, debhelper (>= 8), zlib1g-dev
+Checking for already installed dependencies...
+base-files: already installed (6.2)
+base-passwd: already installed (3.5.22)
+bash: already installed (4.1-3)
+coreutils: already installed (8.5-1)
+dash: already installed (0.5.5.1-7.4)
+debianutils: already installed (3.4.4)
+diffutils: already installed (1:3.0-1)
+dpkg: already installed (1.16.0.1)
+e2fsprogs: already installed (1.41.12-2)
+findutils: already installed (4.4.2-1+b1)
+grep: already installed (2.6.3-3)
+gzip: already installed (1.3.12-9)
+hostname: already installed (3.06)
+ncurses-base: already installed (5.8+20110307-1)
+ncurses-bin: already installed (5.8+20110307-1)
+perl-base: already installed (5.10.1-19)
+sed: already installed (4.2.1-9)
+login: already installed (1:4.1.4.2+svn3283-3)
+sysvinit-utils: already installed (2.88dsf-13.1)
+sysvinit: already installed (2.88dsf-13.1)
+tar: already installed (1.25-3)
+bsdutils: already installed (1:2.17.2-9.1)
+mount: already installed (2.17.2-9.1)
+util-linux: already installed (2.17.2-9.1)
+libc6-dev: already installed (2.11.2-11)
+gcc: already installed (4:4.5.2-5 >= 4:4.4.3 is satisfied)
+g++: already installed (4:4.5.2-5 >= 4:4.4.3 is satisfied)
+make: already installed (3.81-8)
+dpkg-dev: already installed (1.16.0.1 >= 1.13.5 is satisfied)
cdbs: missing
debhelper: missing
-Using default version 8.1.2
+Using default version 8.1.3
zlib1g-dev: missing
-Checking for source dependency conflicts...
+Checking for dependency conflicts...
Installing positive dependencies: cdbs debhelper zlib1g-dev
Reading package lists...
Building dependency tree...
@@ -120,19 +173,39 @@ The following NEW packages will be installed:
bsdmainutils cdbs debhelper file gettext gettext-base groff-base html2text
intltool-debian libcroco3 libglib2.0-0 libmagic1 libpcre3 libpipeline1
libunistring0 libxml2 man-db po-debconf zlib1g-dev
+0 upgraded, 19 newly installed, 0 to remove and 8 not upgraded.
+Need to get 10.2 MB of archives.
+After this operation, 28.5 MB of additional disk space will be used.
+Get:1 http://ftp.gr.debian.org/debian/ unstable/main bsdmainutils i386 8.2.2 [200 kB]
+Get:2 http://ftp.gr.debian.org/debian/ unstable/main groff-base i386 1.21-5 [1125 kB]
+Get:3 http://ftp.gr.debian.org/debian/ unstable/main libpipeline1 i386 1.2.0-1 [35.6 kB]
+Get:4 http://ftp.gr.debian.org/debian/ unstable/main man-db i386 2.6.0.1-1 [991 kB]
+Get:5 http://ftp.gr.debian.org/debian/ unstable/main libmagic1 i386 5.04-5 [234 kB]
+Get:6 http://ftp.gr.debian.org/debian/ unstable/main file i386 5.04-5 [49.1 kB]
+Get:7 http://ftp.gr.debian.org/debian/ unstable/main gettext-base i386 0.18.1.1-3 [130 kB]
+Get:8 http://ftp.gr.debian.org/debian/ unstable/main libpcre3 i386 8.12-3 [255 kB]
+Get:9 http://ftp.gr.debian.org/debian/ unstable/main libxml2 i386 2.7.8.dfsg-2 [827 kB]
+Get:10 http://ftp.gr.debian.org/debian/ unstable/main html2text i386 1.3.2a-15 [101 kB]
+Get:11 http://ftp.gr.debian.org/debian/ unstable/main libglib2.0-0 i386 2.28.4-1 [1498 kB]
+Get:12 http://ftp.gr.debian.org/debian/ unstable/main libcroco3 i386 0.6.2-1 [116 kB]
+Get:13 http://ftp.gr.debian.org/debian/ unstable/main libunistring0 i386 0.9.3-3 [433 kB]
+Get:14 http://ftp.gr.debian.org/debian/ unstable/main gettext i386 0.18.1.1-3 [1973 kB]
+Get:15 http://ftp.gr.debian.org/debian/ unstable/main intltool-debian all 0.35.0+20060710.1 [30.8 kB]
+Get:16 http://ftp.gr.debian.org/debian/ unstable/main po-debconf all 1.0.16+nmu1 [223 kB]
+Get:17 http://ftp.gr.debian.org/debian/ unstable/main debhelper all 8.1.3 [554 kB]
+Get:18 http://ftp.gr.debian.org/debian/ unstable/main cdbs all 0.4.92 [1268 kB]
+Get:19 http://ftp.gr.debian.org/debian/ unstable/main zlib1g-dev i386 1:1.2.3.4.dfsg-3 [186 kB]
debconf: delaying package configuration, since apt-utils is not installed
-0 upgraded, 19 newly installed, 0 to remove and 7 not upgraded.
-Need to get 0 B/10.2 MB of archives.
-After this operation, 28.6 MB of additional disk space will be used.
+Fetched 10.2 MB in 3s (2767 kB/s)
Selecting previously deselected package bsdmainutils.
-(Reading database ... 10379 files and directories currently installed.)
+(Reading database ... 10201 files and directories currently installed.)
Unpacking bsdmainutils (from .../bsdmainutils_8.2.2_i386.deb) ...
Selecting previously deselected package groff-base.
-Unpacking groff-base (from .../groff-base_1.21-4_i386.deb) ...
+Unpacking groff-base (from .../groff-base_1.21-5_i386.deb) ...
Selecting previously deselected package libpipeline1.
-Unpacking libpipeline1 (from .../libpipeline1_1.1.0-1_i386.deb) ...
+Unpacking libpipeline1 (from .../libpipeline1_1.2.0-1_i386.deb) ...
Selecting previously deselected package man-db.
-Unpacking man-db (from .../man-db_2.5.9-4_i386.deb) ...
+Unpacking man-db (from .../man-db_2.6.0.1-1_i386.deb) ...
Selecting previously deselected package libmagic1.
Unpacking libmagic1 (from .../libmagic1_5.04-5_i386.deb) ...
Selecting previously deselected package file.
@@ -146,7 +219,7 @@ Unpacking libxml2 (from .../libxml2_2.7.8.dfsg-2_i386.deb) ...
Selecting previously deselected package html2text.
Unpacking html2text (from .../html2text_1.3.2a-15_i386.deb) ...
Selecting previously deselected package libglib2.0-0.
-Unpacking libglib2.0-0 (from .../libglib2.0-0_2.28.2-1_i386.deb) ...
+Unpacking libglib2.0-0 (from .../libglib2.0-0_2.28.4-1_i386.deb) ...
Selecting previously deselected package libcroco3.
Unpacking libcroco3 (from .../libcroco3_0.6.2-1_i386.deb) ...
Selecting previously deselected package libunistring0.
@@ -158,7 +231,7 @@ Unpacking intltool-debian (from .../intltool-debian_0.35.0+20060710.1_all.deb) .
Selecting previously deselected package po-debconf.
Unpacking po-debconf (from .../po-debconf_1.0.16+nmu1_all.deb) ...
Selecting previously deselected package debhelper.
-Unpacking debhelper (from .../debhelper_8.1.2_all.deb) ...
+Unpacking debhelper (from .../debhelper_8.1.3_all.deb) ...
Selecting previously deselected package cdbs.
Unpacking cdbs (from .../archives/cdbs_0.4.92_all.deb) ...
Selecting previously deselected package zlib1g-dev.
@@ -166,9 +239,9 @@ Unpacking zlib1g-dev (from .../zlib1g-dev_1%3a1.2.3.4.dfsg-3_i386.deb) ...
Setting up bsdmainutils (8.2.2) ...
update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode.
update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode.
-Setting up groff-base (1.21-4) ...
-Setting up libpipeline1 (1.1.0-1) ...
-Setting up man-db (2.5.9-4) ...
+Setting up groff-base (1.21-5) ...
+Setting up libpipeline1 (1.2.0-1) ...
+Setting up man-db (2.6.0.1-1) ...
Building database of manual pages ...
Setting up libmagic1 (5.04-5) ...
Setting up file (5.04-5) ...
@@ -176,21 +249,25 @@ Setting up gettext-base (0.18.1.1-3) ...
Setting up libpcre3 (8.12-3) ...
Setting up libxml2 (2.7.8.dfsg-2) ...
Setting up html2text (1.3.2a-15) ...
-Setting up libglib2.0-0 (2.28.2-1) ...
+Setting up libglib2.0-0 (2.28.4-1) ...
No schema files found: doing nothing.
Setting up libcroco3 (0.6.2-1) ...
Setting up libunistring0 (0.9.3-3) ...
Setting up gettext (0.18.1.1-3) ...
Setting up intltool-debian (0.35.0+20060710.1) ...
Setting up po-debconf (1.0.16+nmu1) ...
-Setting up debhelper (8.1.2) ...
+Setting up debhelper (8.1.3) ...
Setting up cdbs (0.4.92) ...
Setting up zlib1g-dev (1:1.2.3.4.dfsg-3) ...
Removing negative dependencies:
-Checking correctness of source dependencies...
-Kernel: Linux 2.6.32.33-dsa-ia32 i386 (i686)
-Toolchain package versions: libc6-dev_2.11.2-11 dpkg-dev_1.15.8.10 linux-libc-dev_2.6.37-2 gcc-4.5_4.5.2-6 g++-4.5_4.5.2-6 binutils_2.21.0.20110302-2 libstdc++6-4.5-dev_4.5.2-6 libstdc++6_4.5.2-6
-Package versions: apt_0.8.12 base-files_6.1 base-passwd_3.5.22 bash_4.1-3 binutils_2.21.0.20110302-2 bsdmainutils_8.2.2 bsdutils_1:2.17.2-9.1 build-essential_11.5 bzip2_1.0.5-6 cdbs_0.4.92 coreutils_8.5-1 cpp_4:4.5.2-2 cpp-4.5_4.5.2-6 dash_0.5.5.1-7.4 debconf_1.5.38 debconf-i18n_1.5.38 debfoster_2.7-1.1 debhelper_8.1.2 debian-archive-keyring_2010.08.28 debianutils_3.4.4 diffutils_1:3.0-1 dpkg_1.15.8.10 dpkg-dev_1.15.8.10 e2fslibs_1.41.12-2 e2fsprogs_1.41.12-2 fakeroot_1.14.5-2 file_5.04-5 findutils_4.4.2-1+b1 g++_4:4.5.2-2 g++-4.5_4.5.2-6 gcc_4:4.5.2-2 gcc-4.5_4.5.2-6 gcc-4.5-base_4.5.2-6 gettext_0.18.1.1-3 gettext-base_0.18.1.1-3 gnupg_1.4.11-3 gpgv_1.4.11-3 grep_2.6.3-3 groff-base_1.21-4 gzip_1.3.12-9 hostname_3.06 html2text_1.3.2a-15 initscripts_2.88dsf-13.1 insserv_1.14.0-2 intltool-debian_0.35.0+20060710.1 libacl1_2.2.49-4 libattr1_1:2.4.44-2 libblkid1_2.17.2-9.1 libbz2-1.0_1.0.5-6 libc-bin_2.11.2-11 libc-dev-bin_2.11.2-11 libc6_2.11.2-11 libc6-dev_2.11.2-11 libcloog-ppl0_0.15.9-3 libcomerr2_1.41.12-2 libcroco3_0.6.2-1 libdb4.7_4.7.25-12 libdb4.8_4.8.30-5 libdpkg-perl_1.15.8.10 libelfg0_0.8.13-1 libgc1c2_1:7.1-7 libgcc1_1:4.5.2-6 libgdbm3_1.8.3-9 libglib2.0-0_2.28.2-1 libgmp10_2:5.0.1+dfsg-6 libgmpxx4ldbl_2:5.0.1+dfsg-6 libgomp1_4.5.2-6 liblocale-gettext-perl_1.05-6 liblzma2_5.0.0-2 libmagic1_5.04-5 libmpc2_0.9-2 libmpfr4_3.0.0-9 libncurses5_5.8+20110307-1 libpam-modules_1.1.2-2 libpam-runtime_1.1.2-2 libpam0g_1.1.2-2 libpcre3_8.12-3 libpipeline1_1.1.0-1 libppl-c4_0.11.2-2 libppl9_0.11.2-2 libpwl5_0.11.2-2 libreadline6_6.1-3 libselinux1_2.0.96-1 libsepol1_2.0.42-1 libslang2_2.2.2-4 libss2_1.41.12-2 libstdc++6_4.5.2-6 libstdc++6-4.5-dev_4.5.2-6 libtext-charwidth-perl_0.04-6 libtext-iconv-perl_1.7-2 libtext-wrapi18n-perl_0.06-7 libtimedate-perl_1.2000-1 libunistring0_0.9.3-3 libusb-0.1-4_2:0.1.12-17 libuuid1_2.17.2-9.1 libxml2_2.7.8.dfsg-2 linux-libc-dev_2.6.37-2 login_1:4.1.4.2+svn3283-3 lsb-base_3.2-27 make_3.81-8 man-db_2.5.9-4 mawk_1.3.3-15 mount_2.17.2-9.1 ncurses-base_5.8+20110307-1 ncurses-bin_5.8+20110307-1 passwd_1:4.1.4.2+svn3283-3 patch_2.6.1-1 perl_5.10.1-17 perl-base_5.10.1-17 perl-modules_5.10.1-17 po-debconf_1.0.16+nmu1 readline-common_6.1-3 sed_4.2.1-9 sensible-utils_0.0.6 sudo_1.7.4p6-1 sysv-rc_2.88dsf-13.1 sysvinit_2.88dsf-13.1 sysvinit-utils_2.88dsf-13.1 tar_1.25-3 tzdata_2011d-1 util-linux_2.17.2-9.1 xz-utils_5.0.0-2 zlib1g_1:1.2.3.4.dfsg-3 zlib1g-dev_1:1.2.3.4.dfsg-3
+Reading package lists...
+Building dependency tree...
+Reading state information...
+0 upgraded, 0 newly installed, 0 to remove and 8 not upgraded.
+Checking correctness of dependencies...
+Kernel: Linux 2.6.32-5-amd64 i386 (x86_64)
+Toolchain package versions: binutils_2.21.0.20110327-2 dpkg-dev_1.16.0.1 g++-4.5_4.5.2-8 gcc-4.5_4.5.2-8 libc6-dev_2.11.2-11 libstdc++6_4.6.0-2 libstdc++6-4.5-dev_4.5.2-8 linux-libc-dev_2.6.38-2
+Package versions: apt_0.8.13.2 base-files_6.2 base-passwd_3.5.22 bash_4.1-3 binutils_2.21.0.20110327-2 bsdmainutils_8.2.2 bsdutils_1:2.17.2-9.1 build-essential_11.5 bzip2_1.0.5-6 cdbs_0.4.92 coreutils_8.5-1 cpp_4:4.5.2-5 cpp-4.5_4.5.2-8 dash_0.5.5.1-7.4 debconf_1.5.38 debconf-english_1.5.38 debfoster_2.7-1.1 debhelper_8.1.3 debian-archive-keyring_2010.08.28 debianutils_3.4.4 diffutils_1:3.0-1 dpkg_1.16.0.1 dpkg-dev_1.16.0.1 e2fslibs_1.41.12-2 e2fsprogs_1.41.12-2 fakeroot_1.15.1-1 file_5.04-5 findutils_4.4.2-1+b1 g++_4:4.5.2-5 g++-4.5_4.5.2-8 gcc_4:4.5.2-5 gcc-4.5_4.5.2-8 gcc-4.5-base_4.5.2-8 gcc-4.6-base_4.6.0-2 gettext_0.18.1.1-3 gettext-base_0.18.1.1-3 gnupg_1.4.11-3 gpgv_1.4.11-3 grep_2.6.3-3 groff-base_1.21-5 gzip_1.3.12-9 hostname_3.06 html2text_1.3.2a-15 initscripts_2.88dsf-13.1 insserv_1.14.0-2.1 intltool-debian_0.35.0+20060710.1 libacl1_2.2.49-4 libattr1_1:2.4.44-2 libblkid1_2.17.2-9.1 libbz2-1.0_1.0.5-6 libc-bin_2.11.2-11 libc-dev-bin_2.11.2-11 libc6_2.11.2-11 libc6-dev_2.11.2-11 libcloog-ppl0_0.15.9-3 libcomerr2_1.41.12-2 libcroco3_0.6.2-1 libdb4.7_4.7.25-12 libdb4.8_4.8.30-5 libdpkg-perl_1.16.0.1 libelfg0_0.8.13-1 libgc1c2_1:7.1-7 libgcc1_1:4.6.0-2 libgdbm3_1.8.3-9 libglib2.0-0_2.28.4-1 libgmp10_2:5.0.1+dfsg-7 libgmpxx4ldbl_2:5.0.1+dfsg-7 libgomp1_4.6.0-2 liblzma2_5.0.0-2 libmagic1_5.04-5 libmpc2_0.9-2 libmpfr4_3.0.0-9 libncurses5_5.8+20110307-1 libpam-modules_1.1.2-2 libpam-runtime_1.1.2-2 libpam0g_1.1.2-2 libpcre3_8.12-3 libpipeline1_1.2.0-1 libppl-c4_0.11.2-3 libppl9_0.11.2-3 libpwl5_0.11.2-3 libreadline6_6.1-3 libselinux1_2.0.98-1 libsepol1_2.0.42-1 libslang2_2.2.3-2 libss2_1.41.12-2 libstdc++6_4.6.0-2 libstdc++6-4.5-dev_4.5.2-8 libtimedate-perl_1.2000-1 libunistring0_0.9.3-3 libusb-0.1-4_2:0.1.12-17 libuuid1_2.17.2-9.1 libxml2_2.7.8.dfsg-2 linux-libc-dev_2.6.38-2 login_1:4.1.4.2+svn3283-3 lsb-base_3.2-27 make_3.81-8 man-db_2.6.0.1-1 mawk_1.3.3-15 mount_2.17.2-9.1 ncurses-base_5.8+20110307-1 ncurses-bin_5.8+20110307-1 passwd_1:4.1.4.2+svn3283-3 patch_2.6.1-1 perl_5.10.1-19 perl-base_5.10.1-19 perl-modules_5.10.1-19 po-debconf_1.0.16+nmu1 readline-common_6.1-3 sed_4.2.1-9 sensible-utils_0.0.6 sudo_1.7.4p6-1 sysv-rc_2.88dsf-13.1 sysvinit_2.88dsf-13.1 sysvinit-utils_2.88dsf-13.1 tar_1.25-3 tzdata_2011e-1 util-linux_2.17.2-9.1 xz-utils_5.0.0-2 zlib1g_1:1.2.3.4.dfsg-3 zlib1g-dev_1:1.2.3.4.dfsg-3
┌──────────────────────────────────────────────────────────────────────────────┐
│ Build │
@@ -200,14 +277,13 @@ Package versions: apt_0.8.12 base-files_6.1 base-passwd_3.5.22 bash_4.1-3 binuti
Unpack source
─────────────
-dpkg-source: warning: -sn is not a valid option for Dpkg::Source::Package::V3::quilt
gpgv: keyblock resource `/home/buildd/.gnupg/trustedkeys.gpg': file open error
-gpgv: Signature made Wed Jan 19 13:19:58 2011 UTC using RSA key ID 2295D502
+gpgv: Signature made Tue Apr 12 08:22:29 2011 UTC using RSA key ID 2295D502
gpgv: Can't check signature: public key not found
-dpkg-source: warning: failed to verify signature on ./tabix_0.2.3-1.dsc
-dpkg-source: info: extracting tabix in tabix-0.2.3
-dpkg-source: info: unpacking tabix_0.2.3.orig.tar.bz2
-dpkg-source: info: unpacking tabix_0.2.3-1.debian.tar.gz
+dpkg-source: warning: failed to verify signature on ./tabix_0.2.4-1.dsc
+dpkg-source: info: extracting tabix in tabix-0.2.4
+dpkg-source: info: unpacking tabix_0.2.4.orig.tar.bz2
+dpkg-source: info: unpacking tabix_0.2.4-1.debian.tar.gz
Check disc space
────────────────
@@ -222,41 +298,42 @@ dpkg-buildpackage: export CXXFLAGS from dpkg-buildflags (origin: vendor): -g -O2
dpkg-buildpackage: export FFLAGS from dpkg-buildflags (origin: vendor): -g -O2
dpkg-buildpackage: export LDFLAGS from dpkg-buildflags (origin: vendor):
dpkg-buildpackage: source package tabix
-dpkg-buildpackage: source version 0.2.3-1
- dpkg-source --before-build tabix-0.2.3
+dpkg-buildpackage: source version 0.2.4-1
+ dpkg-source --before-build tabix-0.2.4
dpkg-buildpackage: host architecture i386
- /usr/bin/fakeroot debian/rules clean
+ fakeroot debian/rules clean
test -x debian/rules
dh_testroot
rm -f debian/stamp-makefile-build debian/stamp-makefile-install
/usr/bin/make -C . CFLAGS="-g -O2 -g -O2" CXXFLAGS="-g -O2 -g -O2" CPPFLAGS="" LDFLAGS="" -k clean
-make[1]: Entering directory `/build/buildd-tabix_0.2.3-1-i386-6Rktiu/tabix-0.2.3'
-make[2]: Entering directory `/build/buildd-tabix_0.2.3-1-i386-6Rktiu/tabix-0.2.3'
+make[1]: Entering directory `/build/buildd-tabix_0.2.4-1-i386-bfvTRB/tabix-0.2.4'
+make[2]: Entering directory `/build/buildd-tabix_0.2.4-1-i386-bfvTRB/tabix-0.2.4'
rm -fr gmon.out *.o a.out *.dSYM tabix bgzip *~ *.a tabix.aux tabix.log tabix.pdf *.class libtabix.*.dylib libtabix.so*
-make[2]: Leaving directory `/build/buildd-tabix_0.2.3-1-i386-6Rktiu/tabix-0.2.3'
-make[1]: Leaving directory `/build/buildd-tabix_0.2.3-1-i386-6Rktiu/tabix-0.2.3'
+make[2]: Leaving directory `/build/buildd-tabix_0.2.4-1-i386-bfvTRB/tabix-0.2.4'
+make[1]: Leaving directory `/build/buildd-tabix_0.2.4-1-i386-bfvTRB/tabix-0.2.4'
dh_clean
debian/rules build
test -x debian/rules
mkdir -p "."
/usr/share/cdbs/1/rules/buildcore.mk:109: WARNING: DEB_COMPRESS_EXCLUDE is a deprecated variable
/usr/bin/make -C . CFLAGS="-g -O2 -g -O2" CXXFLAGS="-g -O2 -g -O2" CPPFLAGS="" LDFLAGS=""
-make[1]: Entering directory `/build/buildd-tabix_0.2.3-1-i386-6Rktiu/tabix-0.2.3'
-make[2]: Entering directory `/build/buildd-tabix_0.2.3-1-i386-6Rktiu/tabix-0.2.3'
+make[1]: Entering directory `/build/buildd-tabix_0.2.4-1-i386-bfvTRB/tabix-0.2.4'
+make[2]: Entering directory `/build/buildd-tabix_0.2.4-1-i386-bfvTRB/tabix-0.2.4'
gcc -c -g -O2 -g -O2 -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE bgzf.c -o bgzf.o
gcc -c -g -O2 -g -O2 -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE kstring.c -o kstring.o
gcc -c -g -O2 -g -O2 -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE knetfile.c -o knetfile.o
gcc -c -g -O2 -g -O2 -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE index.c -o index.o
-ar -cru libtabix.a bgzf.o kstring.o knetfile.o index.o
+gcc -c -g -O2 -g -O2 -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE bedidx.c -o bedidx.o
+ar -cru libtabix.a bgzf.o kstring.o knetfile.o index.o bedidx.o
gcc -c -g -O2 -g -O2 -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE main.c -o main.o
gcc -g -O2 -g -O2 -o tabix main.o -lm -lz -L. -ltabix
gcc -c -g -O2 -g -O2 -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE bgzip.c -o bgzip.o
gcc -g -O2 -g -O2 -o bgzip bgzip.o bgzf.o knetfile.o -lz
-make[2]: Leaving directory `/build/buildd-tabix_0.2.3-1-i386-6Rktiu/tabix-0.2.3'
-make[1]: Leaving directory `/build/buildd-tabix_0.2.3-1-i386-6Rktiu/tabix-0.2.3'
+make[2]: Leaving directory `/build/buildd-tabix_0.2.4-1-i386-bfvTRB/tabix-0.2.4'
+make[1]: Leaving directory `/build/buildd-tabix_0.2.4-1-i386-bfvTRB/tabix-0.2.4'
touch debian/stamp-makefile-build
DEB_MAKE_CHECK_TARGET unset, not running checks
- /usr/bin/fakeroot debian/rules binary-arch
+ fakeroot debian/rules binary-arch
test -x debian/rules
dh_testroot
dh_prep
@@ -298,58 +375,59 @@ dpkg-shlibdeps: warning: dependency on libm.so.6 could be avoided if "debian/tab
dh_gencontrol -ptabix
dh_md5sums -ptabix
dh_builddeb -ptabix
-dpkg-deb: building package `tabix' in `../tabix_0.2.3-1_i386.deb'.
- dpkg-genchanges -B -mi386 Build Daemon (murphy) <buildd_i386-murphy at buildd.debian.org> >../tabix_0.2.3-1_i386.changes
+dpkg-deb: building package `tabix' in `../tabix_0.2.4-1_i386.deb'.
+ dpkg-genchanges -B -mi386 Build Daemon <buildd_i386-biber at buildd.debian.org> >../tabix_0.2.4-1_i386.changes
dpkg-genchanges: arch-specific upload - not including arch-independent packages
dpkg-genchanges: binary-only upload - not including any source code
- dpkg-source --after-build tabix-0.2.3
+ dpkg-source --after-build tabix-0.2.4
dpkg-buildpackage: binary only upload (no source included)
────────────────────────────────────────────────────────────────────────────────
-Build finished at 20110316-1057
+Build finished at 20110412-0945
-tabix_0.2.3-1_i386.changes:
+tabix_0.2.4-1_i386.changes:
Format: 1.8
-Date: Wed, 19 Jan 2011 22:16:39 +0900
+Date: Tue, 12 Apr 2011 17:15:33 +0900
Source: tabix
Binary: tabix
Architecture: i386
-Version: 0.2.3-1
+Version: 0.2.4-1
Distribution: sid
Urgency: low
-Maintainer: i386 Build Daemon (murphy) <buildd_i386-murphy at buildd.debian.org>
+Maintainer: i386 Build Daemon <buildd_i386-biber at buildd.debian.org>
Changed-By: Charles Plessy <plessy at debian.org>
Description:
tabix - generic indexer for TAB-delimited genome position files
-Closes: 606446
Changes:
- tabix (0.2.3-1) unstable; urgency=low
+ tabix (0.2.4-1) unstable; urgency=low
.
- * Initial release (Closes: #606446)
+ * New upstream release.
+ * Incremented Standards-Version to reflect conformance with Policy 3.9.2
+ (debian/control).
Checksums-Sha1:
- 26bbf77f73f5d84ee3d923ea4c85afac96cd058c 44464 tabix_0.2.3-1_i386.deb
+ b38e1b9b55be88e2c2123413e36f0b9974527081 54176 tabix_0.2.4-1_i386.deb
Checksums-Sha256:
- 24589e39f92223a630ee1e83ebd56369e9e6a4d375458cf40f619ba060976b8b 44464 tabix_0.2.3-1_i386.deb
+ 8e713ab0e7d469e5b131d6fbdc14228bf9fb2ad6aa78ebf453fd37689281e62e 54176 tabix_0.2.4-1_i386.deb
Files:
- 41d58c164f2da6a26bfb35abef1a7b64 44464 science optional tabix_0.2.3-1_i386.deb
+ d1a6576653602687a5fb59b60c4dc32e 54176 science optional tabix_0.2.4-1_i386.deb
┌──────────────────────────────────────────────────────────────────────────────┐
│ Package contents │
└──────────────────────────────────────────────────────────────────────────────┘
-tabix_0.2.3-1_i386.deb
+tabix_0.2.4-1_i386.deb
──────────────────────
new debian package, version 2.0.
- size 44464 bytes: control archive= 957 bytes.
- 777 bytes, 16 lines control
+ size 54176 bytes: control archive= 958 bytes.
+ 784 bytes, 16 lines control
587 bytes, 9 lines md5sums
Package: tabix
- Version: 0.2.3-1
+ Version: 0.2.4-1
Architecture: i386
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
- Installed-Size: 148
- Depends: libc6 (>= 2.7), zlib1g (>= 1:1.1.4)
+ Installed-Size: 156
+ Depends: libc6 (>= 2.7), zlib1g (>= 1:1.2.3.3.dfsg)
Section: science
Priority: optional
Homepage: http://samtools.sourceforge.net/tabix.shtml
@@ -361,25 +439,25 @@ tabix_0.2.3-1_i386.deb
chromosomal coordinates. Fast data retrieval also works over network if an URI
is given as a file name.
-drwxr-xr-x root/root 0 2011-03-16 10:57 ./
-drwxr-xr-x root/root 0 2011-03-16 10:57 ./usr/
-drwxr-xr-x root/root 0 2011-03-16 10:57 ./usr/bin/
--rwxr-xr-x root/root 22276 2011-03-16 10:57 ./usr/bin/bgzip
--rwxr-xr-x root/root 49300 2011-03-16 10:57 ./usr/bin/tabix
-drwxr-xr-x root/root 0 2011-03-16 10:57 ./usr/share/
-drwxr-xr-x root/root 0 2011-03-16 10:57 ./usr/share/man/
-drwxr-xr-x root/root 0 2011-03-16 10:57 ./usr/share/man/man1/
--rw-r--r-- root/root 1716 2011-03-16 10:57 ./usr/share/man/man1/tabix.1.gz
-drwxr-xr-x root/root 0 2011-03-16 10:57 ./usr/share/doc/
-drwxr-xr-x root/root 0 2011-03-16 10:57 ./usr/share/doc/tabix/
--rw-r--r-- root/root 154 2011-01-19 13:16 ./usr/share/doc/tabix/changelog.Debian.gz
--rw-r--r-- root/root 1346 2011-01-19 13:03 ./usr/share/doc/tabix/copyright
-drwxr-xr-x root/root 0 2011-03-16 10:57 ./usr/share/doc/tabix/examples/
--rw-r--r-- root/root 260 2010-12-08 17:34 ./usr/share/doc/tabix/examples/example.gtf.gz.tbi
+drwxr-xr-x root/root 0 2011-04-12 09:45 ./
+drwxr-xr-x root/root 0 2011-04-12 09:45 ./usr/
+drwxr-xr-x root/root 0 2011-04-12 09:45 ./usr/bin/
+-rwxr-xr-x root/root 57620 2011-04-12 09:45 ./usr/bin/tabix
+-rwxr-xr-x root/root 22276 2011-04-12 09:45 ./usr/bin/bgzip
+drwxr-xr-x root/root 0 2011-04-12 09:45 ./usr/share/
+drwxr-xr-x root/root 0 2011-04-12 09:45 ./usr/share/doc/
+drwxr-xr-x root/root 0 2011-04-12 09:45 ./usr/share/doc/tabix/
+-rw-r--r-- root/root 3487 2011-04-10 19:21 ./usr/share/doc/tabix/changelog.gz
+drwxr-xr-x root/root 0 2011-04-12 09:45 ./usr/share/doc/tabix/examples/
+-rw-r--r-- root/root 259 2011-04-10 19:21 ./usr/share/doc/tabix/examples/example.gtf.gz.tbi
-rw-r--r-- root/root 3778 2010-12-08 17:34 ./usr/share/doc/tabix/examples/example.gtf.gz
--rw-r--r-- root/root 944 2010-12-08 17:38 ./usr/share/doc/tabix/NEWS.gz
--rw-r--r-- root/root 2920 2010-12-08 17:38 ./usr/share/doc/tabix/changelog.gz
-lrwxrwxrwx root/root 0 2011-03-16 10:57 ./usr/share/man/man1/bgzip.1.gz -> tabix.1.gz
+-rw-r--r-- root/root 1169 2011-04-10 19:21 ./usr/share/doc/tabix/NEWS.gz
+-rw-r--r-- root/root 262 2011-04-12 08:16 ./usr/share/doc/tabix/changelog.Debian.gz
+-rw-r--r-- root/root 1473 2011-04-12 07:17 ./usr/share/doc/tabix/copyright
+drwxr-xr-x root/root 0 2011-04-12 09:45 ./usr/share/man/
+drwxr-xr-x root/root 0 2011-04-12 09:45 ./usr/share/man/man1/
+-rw-r--r-- root/root 1834 2011-04-12 09:45 ./usr/share/man/man1/tabix.1.gz
+lrwxrwxrwx root/root 0 2011-04-12 09:45 ./usr/share/man/man1/bgzip.1.gz -> tabix.1.gz
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -388,39 +466,31 @@ lrwxrwxrwx root/root 0 2011-03-16 10:57 ./usr/share/man/man1/bgzip.1.gz
Built successfully
────────────────────────────────────────────────────────────────────────────────
-Purging /var/lib/schroot/mount/sid-i386-sbuild-5563e941-a4f9-48ce-9fbd-ac1a3598416f/build/buildd-tabix_0.2.3-1-i386-6Rktiu
-(Reading database ... 11771 files and directories currently installed.)
-Removing zlib1g-dev ...
-Removing cdbs ...
-Removing debhelper ...
-Removing po-debconf ...
-Removing man-db ...
-Purging configuration files for man-db ...
-Removing intltool-debian ...
-Removing groff-base ...
-Purging configuration files for groff-base ...
-Removing gettext ...
-Removing file ...
-Removing html2text ...
-Purging configuration files for html2text ...
-Removing gettext-base ...
-Removing libunistring0 ...
-Purging configuration files for libunistring0 ...
-Removing libcroco3 ...
-Purging configuration files for libcroco3 ...
-Removing libmagic1 ...
-Purging configuration files for libmagic1 ...
-Removing libpipeline1 ...
-Purging configuration files for libpipeline1 ...
-Removing libxml2 ...
-Purging configuration files for libxml2 ...
-Removing bsdmainutils ...
-Purging configuration files for bsdmainutils ...
-Removing libglib2.0-0 ...
-Purging configuration files for libglib2.0-0 ...
-Removing libpcre3 ...
-Purging configuration files for libpcre3 ...
-────────────────────────────────────────────────────────────────────────────────
-Finished at 20110316-1057
-Build needed 00:00:24, 1164k disc space
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Post Build │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+Purging /var/lib/schroot/mount/sid-i386-sbuild-0658a39d-fc72-4166-bdde-2ced3200b93b/build/buildd-tabix_0.2.4-1-i386-bfvTRB
+Not cleaning session: cloned chroot in use
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Summary │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+Architecture: i386
+Build-Space: 1316
+Build-Time: 13
+Distribution: sid
+Install-Time: 38
+Job: tabix_0.2.4-1
+Package: tabix
+Package-Time: 79
+Source-Version: 0.2.4-1
+Space: 1316
+Status: successful
+Version: 0.2.4-1
+────────────────────────────────────────────────────────────────────────────────
+Finished at 20110412-0945
+Build needed 00:01:19, 1316k disc space
+Signature with key '44C3EAC7' requested:
diff --git a/ia64.log b/ia64.log
index 9866bcd..b592487 100644
--- a/ia64.log
+++ b/ia64.log
@@ -1,68 +1,67 @@
-From buildd at alkman.debian.org Wed Mar 16 12:25:25 2011
+From buildd at alkman.debian.org Tue Apr 12 09:50:58 2011
Return-path: <buildd at alkman.debian.org>
-Received: from kokkonen.debian.org ([2001:41b8:202:deb:216:35ff:fec4:6340])
+Received: from merikanto.debian.org ([2001:858:2:2:216:35ff:fec4:a49a])
from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
- CN=kokkonen.debian.org,
- EMAIL=hostmaster at kokkonen.debian.org (verified)
+ CN=merikanto.debian.org,
+ EMAIL=hostmaster at merikanto.debian.org (verified)
by grieg.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
(Exim 4.69) (envelope-from <buildd at alkman.debian.org>)
- id 1Pzpn3-0003hP-Fi
- for logs at buildd.debian.org; Wed, 16 Mar 2011 12:25:25 +0000
+ id 1Q9aFO-00040N-Hg
+ for logs at buildd.debian.org; Tue, 12 Apr 2011 09:50:58 +0000
Received: from alkman.debian.org ([192.25.206.63])
from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
CN=alkman.debian.org, EMAIL=hostmaster at alkman.debian.org (verified)
- by kokkonen.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
- (Exim 4.69) (envelope-from <buildd at alkman.debian.org>)
- id 1Pzpn0-00021U-Tb
- for logs at buildd.debian.org; Wed, 16 Mar 2011 12:25:23 +0000
-Received: from buildd by alkman.debian.org with local (Exim 4.69)
+ by merikanto.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
+ (Exim 4.72) (envelope-from <buildd at alkman.debian.org>)
+ id 1Q9aFH-000367-FW
+ for logs at buildd.debian.org; Tue, 12 Apr 2011 09:50:52 +0000
+Received: from buildd by alkman.debian.org with local (Exim 4.72)
(envelope-from <buildd at alkman.debian.org>)
- id 1Pzpmt-0000Uc-2u; Wed, 16 Mar 2011 12:25:15 +0000
+ id 1Q9aFF-0002H8-Am; Tue, 12 Apr 2011 09:50:49 +0000
+Date: Tue, 12 Apr 2011 09:50:49 +0000
+Message-Id: <E1Q9aFF-0002H8-Am at alkman.debian.org>
From: buildd on alkman <buildd at alkman.debian.org>
To: buildd-porters at alkman.debian.org,logs at buildd.debian.org
-Subject: Log for successful build of tabix_0.2.3-1 on ia64 (dist=sid)
+Subject: Log for successful build of tabix_0.2.4-1 on ia64 (dist=sid)
Content-Type: text/plain; charset=UTF-8
Content-Transfer-Encoding: 8bit
-Message-Id: <E1Pzpmt-0000Uc-2u at alkman.debian.org>
-Date: Wed, 16 Mar 2011 12:25:15 +0000
Delivered-To: logs at buildd.debian.org
-sbuild (Debian sbuild) 0.60.5 (14 Nov 2010) on alkman.debian.org
+sbuild (Debian sbuild) 0.61.0 (23 Feb 2011) on alkman.debian.org
╔══════════════════════════════════════════════════════════════════════════════╗
-║ tabix 0.2.3-1 (ia64) 16 Mar 2011 12:23 ║
+║ tabix 0.2.4-1 (ia64) 12 Apr 2011 09:48 ║
╚══════════════════════════════════════════════════════════════════════════════╝
Package: tabix
-Version: 0.2.3-1
+Version: 0.2.4-1
+Source Version: 0.2.4-1
Architecture: ia64
-Chroot Build Dir: /var/lib/schroot/mount/sid-ia64-sbuild-0795d018-3e5c-4ee3-bb0e-2b03bae03d6b/build/buildd-tabix_0.2.3-1-ia64-pPR382
-Start Time: 20110316-1223
-Get:1 http://spohr.debian.org unstable InRelease [147 kB]
-Get:2 http://spohr.debian.org unstable/main Sources [4205 kB]
-Get:3 http://incoming.debian.org unstable InRelease [147 kB]
-Get:4 http://spohr.debian.org unstable/contrib Sources [38.8 kB]
-Get:5 http://spohr.debian.org unstable/non-free Sources [81.3 kB]
-Get:6 http://spohr.debian.org unstable/main ia64 Packages [6816 kB]
+Get:1 http://spohr.debian.org unstable InRelease [151 kB]
+Get:2 http://incoming.debian.org unstable InRelease [151 kB]
+Get:3 http://spohr.debian.org unstable/main Sources [5265 kB]
+Get:4 http://spohr.debian.org unstable/contrib Sources [48.2 kB]
+Get:5 http://spohr.debian.org unstable/non-free Sources [97.4 kB]
+Get:6 http://spohr.debian.org unstable/main ia64 Packages [6981 kB]
Ign http://incoming.debian.org InRelease
-Get:7 http://incoming.debian.org Release.gpg [835 B]
-Get:8 http://incoming.debian.org unstable/main Sources [4205 kB]
-Get:9 http://spohr.debian.org unstable/contrib ia64 Packages [51.8 kB]
+Get:7 http://incoming.debian.org Release.gpg [836 B]
+Get:8 http://incoming.debian.org unstable/main Sources [5265 kB]
+Get:9 http://spohr.debian.org unstable/contrib ia64 Packages [52.9 kB]
Ign http://spohr.debian.org unstable/contrib TranslationIndex
-Get:10 http://spohr.debian.org unstable/main TranslationIndex [2232 B]
+Get:10 http://spohr.debian.org unstable/main TranslationIndex [2264 B]
Ign http://spohr.debian.org unstable/contrib Translation-en
-Get:11 http://incoming.debian.org unstable/contrib Sources [38.8 kB]
-Get:12 http://incoming.debian.org unstable/non-free Sources [81.3 kB]
-Get:13 http://incoming.debian.org unstable/main ia64 Packages [6816 kB]
-Get:14 http://incoming.debian.org unstable/contrib ia64 Packages [51.8 kB]
+Get:11 http://incoming.debian.org unstable/contrib Sources [48.2 kB]
+Get:12 http://incoming.debian.org unstable/non-free Sources [97.4 kB]
+Get:13 http://incoming.debian.org unstable/main ia64 Packages [6981 kB]
+Get:14 http://incoming.debian.org unstable/contrib ia64 Packages [52.9 kB]
Ign http://incoming.debian.org unstable/contrib TranslationIndex
-Get:15 http://incoming.debian.org unstable/main TranslationIndex [2232 B]
+Get:15 http://incoming.debian.org unstable/main TranslationIndex [2264 B]
Get:16 http://incoming.debian.org Release [1604 B]
-Get:17 http://incoming.debian.org Sources [30.6 kB]
-Get:18 http://incoming.debian.org Packages [493 kB]
+Get:17 http://incoming.debian.org Sources [49.0 kB]
+Get:18 http://incoming.debian.org Packages [775 kB]
Ign http://incoming.debian.org unstable/contrib Translation-en
Ign http://incoming.debian.org Translation-en
-Fetched 23.2 MB in 20s (1151 kB/s)
+Fetched 26.0 MB in 23s (1129 kB/s)
Reading package lists...
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -83,29 +82,78 @@ Building dependency tree...
Reading state information...
NOTICE: 'tabix' packaging is maintained in the 'Git' version control system at:
git://git.debian.org/debian-med/tabix.git
-Need to get 50.4 kB of source archives.
-Get:1 http://incoming.debian.org/buildd-unstable/ tabix 0.2.3-1 (dsc) [1882 B]
-Get:2 http://incoming.debian.org/buildd-unstable/ tabix 0.2.3-1 (tar) [46.4 kB]
-Get:3 http://incoming.debian.org/buildd-unstable/ tabix 0.2.3-1 (diff) [2130 B]
-Fetched 50.4 kB in 0s (95.6 kB/s)
+Need to get 58.4 kB of source archives.
+Get:1 http://incoming.debian.org/buildd-unstable/ tabix 0.2.4-1 (dsc) [1882 B]
+Get:2 http://incoming.debian.org/buildd-unstable/ tabix 0.2.4-1 (tar) [54.2 kB]
+Get:3 http://incoming.debian.org/buildd-unstable/ tabix 0.2.4-1 (diff) [2322 B]
+Fetched 58.4 kB in 0s (111 kB/s)
Download complete and in download only mode
Check arch
──────────
-** Using build dependencies supplied by package:
-Build-Depends: cdbs, debhelper (>= 8), zlib1g-dev
┌──────────────────────────────────────────────────────────────────────────────┐
-│ Install build dependencies (internal resolver) │
+│ Install core build dependencies (internal resolver) │
└──────────────────────────────────────────────────────────────────────────────┘
-Checking for already installed source dependencies...
+Build-Depends: build-essential, fakeroot
+Checking for already installed dependencies...
+build-essential: already installed (11.5)
+fakeroot: already installed (1.15.1-1)
+Checking for dependency conflicts...
+Installing positive dependencies:
+Reading package lists...
+Building dependency tree...
+Reading state information...
+0 upgraded, 0 newly installed, 0 to remove and 6 not upgraded.
+Removing negative dependencies:
+Reading package lists...
+Building dependency tree...
+Reading state information...
+0 upgraded, 0 newly installed, 0 to remove and 6 not upgraded.
+Checking correctness of dependencies...
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Install tabix build dependencies (internal resolver) │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+Build-Depends: base-files, base-passwd, bash, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, ncurses-base, ncurses-bin, perl-base, sed, login, sysvinit-utils, sysvinit, tar, bsdutils, mount, util-linux, libc6.1-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), cdbs, debhelper (>= 8), zlib1g-dev
+Checking for already installed dependencies...
+base-files: already installed (6.2)
+base-passwd: already installed (3.5.22)
+bash: already installed (4.1-3)
+coreutils: already installed (8.5-1)
+dash: already installed (0.5.5.1-7.4)
+debianutils: already installed (3.4.4)
+diffutils: already installed (1:3.0-1)
+dpkg: already installed (1.16.0.1)
+e2fsprogs: already installed (1.41.12-2)
+findutils: already installed (4.4.2-1+b1)
+grep: already installed (2.6.3-3)
+gzip: already installed (1.3.12-9)
+hostname: already installed (3.06)
+ncurses-base: already installed (5.8+20110307-1)
+ncurses-bin: already installed (5.8+20110307-1)
+perl-base: already installed (5.10.1-19)
+sed: already installed (4.2.1-9)
+login: already installed (1:4.1.4.2+svn3283-3)
+sysvinit-utils: already installed (2.88dsf-13.1)
+sysvinit: already installed (2.88dsf-13.1)
+tar: already installed (1.25-3)
+bsdutils: already installed (1:2.17.2-9.1)
+mount: already installed (2.17.2-9.1)
+util-linux: already installed (2.17.2-9.1)
+libc6.1-dev: already installed (2.11.2-13)
+gcc: already installed (4:4.4.5-7 >= 4:4.4.3 is satisfied)
+g++: already installed (4:4.4.5-7 >= 4:4.4.3 is satisfied)
+make: already installed (3.81-8)
+dpkg-dev: already installed (1.16.0.1 >= 1.13.5 is satisfied)
cdbs: missing
debhelper: missing
-Using default version 8.1.2
+Using default version 8.1.3
zlib1g-dev: missing
-Checking for source dependency conflicts...
+Checking for dependency conflicts...
Installing positive dependencies: cdbs debhelper zlib1g-dev
Reading package lists...
Building dependency tree...
@@ -124,39 +172,39 @@ The following NEW packages will be installed:
bsdmainutils cdbs debhelper file gettext gettext-base groff-base html2text
intltool-debian libcroco3 libglib2.0-0 libmagic1 libpcre3 libpipeline1
libunistring0 libxml2 man-db po-debconf zlib1g-dev
-0 upgraded, 19 newly installed, 0 to remove and 12 not upgraded.
+0 upgraded, 19 newly installed, 0 to remove and 6 not upgraded.
Need to get 12.3 MB of archives.
-After this operation, 40.1 MB of additional disk space will be used.
+After this operation, 41.3 MB of additional disk space will be used.
Get:1 http://spohr.debian.org/debian/ unstable/main bsdmainutils ia64 8.2.2 [236 kB]
-Get:2 http://spohr.debian.org/debian/ unstable/main groff-base ia64 1.21-4 [1400 kB]
-Get:3 http://spohr.debian.org/debian/ unstable/main libpipeline1 ia64 1.1.0-1 [46.5 kB]
-Get:4 http://spohr.debian.org/debian/ unstable/main man-db ia64 2.5.9-4 [1154 kB]
+Get:2 http://spohr.debian.org/debian/ unstable/main groff-base ia64 1.21-5 [1440 kB]
+Get:3 http://spohr.debian.org/debian/ unstable/main libpipeline1 ia64 1.2.0-1 [47.2 kB]
+Get:4 http://spohr.debian.org/debian/ unstable/main man-db ia64 2.6.0.1-1 [1122 kB]
Get:5 http://spohr.debian.org/debian/ unstable/main libmagic1 ia64 5.04-5 [263 kB]
Get:6 http://spohr.debian.org/debian/ unstable/main file ia64 5.04-5 [51.9 kB]
Get:7 http://spohr.debian.org/debian/ unstable/main gettext-base ia64 0.18.1.1-3 [174 kB]
Get:8 http://spohr.debian.org/debian/ unstable/main libpcre3 ia64 8.12-3 [316 kB]
Get:9 http://spohr.debian.org/debian/ unstable/main libxml2 ia64 2.7.8.dfsg-2 [1181 kB]
Get:10 http://spohr.debian.org/debian/ unstable/main html2text ia64 1.3.2a-15 [134 kB]
-Get:11 http://spohr.debian.org/debian/ unstable/main libglib2.0-0 ia64 2.28.2-1 [1969 kB]
+Get:11 http://spohr.debian.org/debian/ unstable/main libglib2.0-0 ia64 2.28.4-1 [1972 kB]
Get:12 http://spohr.debian.org/debian/ unstable/main libcroco3 ia64 0.6.2-1 [155 kB]
Get:13 http://spohr.debian.org/debian/ unstable/main libunistring0 ia64 0.9.3-3 [469 kB]
Get:14 http://spohr.debian.org/debian/ unstable/main gettext ia64 0.18.1.1-3 [2453 kB]
-Get:15 http://spohr.debian.org/debian/ unstable/main intltool-debian ia64 0.35.0+20060710.1 [30.8 kB]
-Get:16 http://spohr.debian.org/debian/ unstable/main po-debconf ia64 1.0.16+nmu1 [223 kB]
-Get:17 http://spohr.debian.org/debian/ unstable/main debhelper ia64 8.1.2 [553 kB]
-Get:18 http://spohr.debian.org/debian/ unstable/main cdbs ia64 0.4.92 [1268 kB]
+Get:15 http://spohr.debian.org/debian/ unstable/main intltool-debian all 0.35.0+20060710.1 [30.8 kB]
+Get:16 http://spohr.debian.org/debian/ unstable/main po-debconf all 1.0.16+nmu1 [223 kB]
+Get:17 http://spohr.debian.org/debian/ unstable/main debhelper all 8.1.3 [554 kB]
+Get:18 http://spohr.debian.org/debian/ unstable/main cdbs all 0.4.92 [1268 kB]
Get:19 http://spohr.debian.org/debian/ unstable/main zlib1g-dev ia64 1:1.2.3.4.dfsg-3 [224 kB]
debconf: delaying package configuration, since apt-utils is not installed
-Fetched 12.3 MB in 0s (14.1 MB/s)
+Fetched 12.3 MB in 0s (15.4 MB/s)
Selecting previously deselected package bsdmainutils.
-(Reading database ... 10169 files and directories currently installed.)
+(Reading database ... 10045 files and directories currently installed.)
Unpacking bsdmainutils (from .../bsdmainutils_8.2.2_ia64.deb) ...
Selecting previously deselected package groff-base.
-Unpacking groff-base (from .../groff-base_1.21-4_ia64.deb) ...
+Unpacking groff-base (from .../groff-base_1.21-5_ia64.deb) ...
Selecting previously deselected package libpipeline1.
-Unpacking libpipeline1 (from .../libpipeline1_1.1.0-1_ia64.deb) ...
+Unpacking libpipeline1 (from .../libpipeline1_1.2.0-1_ia64.deb) ...
Selecting previously deselected package man-db.
-Unpacking man-db (from .../man-db_2.5.9-4_ia64.deb) ...
+Unpacking man-db (from .../man-db_2.6.0.1-1_ia64.deb) ...
Selecting previously deselected package libmagic1.
Unpacking libmagic1 (from .../libmagic1_5.04-5_ia64.deb) ...
Selecting previously deselected package file.
@@ -170,7 +218,7 @@ Unpacking libxml2 (from .../libxml2_2.7.8.dfsg-2_ia64.deb) ...
Selecting previously deselected package html2text.
Unpacking html2text (from .../html2text_1.3.2a-15_ia64.deb) ...
Selecting previously deselected package libglib2.0-0.
-Unpacking libglib2.0-0 (from .../libglib2.0-0_2.28.2-1_ia64.deb) ...
+Unpacking libglib2.0-0 (from .../libglib2.0-0_2.28.4-1_ia64.deb) ...
Selecting previously deselected package libcroco3.
Unpacking libcroco3 (from .../libcroco3_0.6.2-1_ia64.deb) ...
Selecting previously deselected package libunistring0.
@@ -178,21 +226,21 @@ Unpacking libunistring0 (from .../libunistring0_0.9.3-3_ia64.deb) ...
Selecting previously deselected package gettext.
Unpacking gettext (from .../gettext_0.18.1.1-3_ia64.deb) ...
Selecting previously deselected package intltool-debian.
-Unpacking intltool-debian (from .../intltool-debian_0.35.0+20060710.1_ia64.deb) ...
+Unpacking intltool-debian (from .../intltool-debian_0.35.0+20060710.1_all.deb) ...
Selecting previously deselected package po-debconf.
-Unpacking po-debconf (from .../po-debconf_1.0.16+nmu1_ia64.deb) ...
+Unpacking po-debconf (from .../po-debconf_1.0.16+nmu1_all.deb) ...
Selecting previously deselected package debhelper.
-Unpacking debhelper (from .../debhelper_8.1.2_ia64.deb) ...
+Unpacking debhelper (from .../debhelper_8.1.3_all.deb) ...
Selecting previously deselected package cdbs.
-Unpacking cdbs (from .../archives/cdbs_0.4.92_ia64.deb) ...
+Unpacking cdbs (from .../archives/cdbs_0.4.92_all.deb) ...
Selecting previously deselected package zlib1g-dev.
Unpacking zlib1g-dev (from .../zlib1g-dev_1%3a1.2.3.4.dfsg-3_ia64.deb) ...
Setting up bsdmainutils (8.2.2) ...
update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode.
update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode.
-Setting up groff-base (1.21-4) ...
-Setting up libpipeline1 (1.1.0-1) ...
-Setting up man-db (2.5.9-4) ...
+Setting up groff-base (1.21-5) ...
+Setting up libpipeline1 (1.2.0-1) ...
+Setting up man-db (2.6.0.1-1) ...
Building database of manual pages ...
Setting up libmagic1 (5.04-5) ...
Setting up file (5.04-5) ...
@@ -200,21 +248,25 @@ Setting up gettext-base (0.18.1.1-3) ...
Setting up libpcre3 (8.12-3) ...
Setting up libxml2 (2.7.8.dfsg-2) ...
Setting up html2text (1.3.2a-15) ...
-Setting up libglib2.0-0 (2.28.2-1) ...
+Setting up libglib2.0-0 (2.28.4-1) ...
No schema files found: doing nothing.
Setting up libcroco3 (0.6.2-1) ...
Setting up libunistring0 (0.9.3-3) ...
Setting up gettext (0.18.1.1-3) ...
Setting up intltool-debian (0.35.0+20060710.1) ...
Setting up po-debconf (1.0.16+nmu1) ...
-Setting up debhelper (8.1.2) ...
+Setting up debhelper (8.1.3) ...
Setting up cdbs (0.4.92) ...
Setting up zlib1g-dev (1:1.2.3.4.dfsg-3) ...
Removing negative dependencies:
-Checking correctness of source dependencies...
-Kernel: Linux 2.6.32-bpo.5-mckinley ia64 (ia64)
-Toolchain package versions: libc6.1-dev_2.11.2-13 dpkg-dev_1.15.8.10 linux-libc-dev_2.6.37-2 gcc-4.4_4.4.5-13 g++-4.4_4.4.5-13 binutils_2.21.0.20110302-1 libstdc++6-4.4-dev_4.4.5-13 libstdc++6_4.5.2-5
-Package versions: apt_0.8.12 base-files_6.1 base-passwd_3.5.22 bash_4.1-3 binutils_2.21.0.20110302-1 bsdmainutils_8.2.2 bsdutils_1:2.17.2-9.1 build-essential_11.5 bzip2_1.0.5-6 cdbs_0.4.92 coreutils_8.5-1 cpp_4:4.4.5-4 cpp-4.4_4.4.5-13 dash_0.5.5.1-7.4 debconf_1.5.38 debconf-i18n_1.5.38 debfoster_2.7-1.1 debhelper_8.1.2 debian-archive-keyring_2010.08.28 debianutils_3.4.4 diffutils_1:3.0-1 dpkg_1.15.8.10 dpkg-dev_1.15.8.10 e2fslibs_1.41.12-2 e2fsprogs_1.41.12-2 fakeroot_1.14.5-2 file_5.04-5 findutils_4.4.2-1+b1 g++_4:4.4.5-4 g++-4.4_4.4.5-13 gcc_4:4.4.5-4 gcc-4.4_4.4.5-13 gcc-4.4-base_4.4.5-13 gcc-4.5-base_4.5.2-5 gettext_0.18.1.1-3 gettext-base_0.18.1.1-3 gnupg_1.4.11-3 gpgv_1.4.11-3 grep_2.6.3-3 groff-base_1.21-4 gzip_1.3.12-9 hostname_3.06 html2text_1.3.2a-15 initscripts_2.88dsf-13.1 insserv_1.14.0-2 intltool-debian_0.35.0+20060710.1 libacl1_2.2.49-4 libattr1_1:2.4.44-2 libblkid1_2.17.2-9.1 libbz2-1.0_1.0.5-6 libc-bin_2.11.2-13 libc-dev-bin_2.11.2-13 libc6.1_2.11.2-13 libc6.1-dev_2.11.2-13 libcomerr2_1.41.12-2 libcroco3_0.6.2-1 libdb4.7_4.7.25-12 libdb4.8_4.8.30-5 libdpkg-perl_1.15.8.10 libgc1c2_1:7.1-7 libgcc1_1:4.5.2-5 libgdbm3_1.8.3-9 libglib2.0-0_2.28.2-1 libgmp10_2:5.0.1+dfsg-6 libgmp3c2_2:4.3.2+dfsg-1 libgomp1_4.5.2-5 liblocale-gettext-perl_1.05-6 liblzma2_5.0.0-2 libmagic1_5.04-5 libmpfr1ldbl_2.4.2-3 libmpfr4_3.0.0-9 libncurses5_5.8+20110307-1 libpam-modules_1.1.2-2 libpam-runtime_1.1.2-2 libpam0g_1.1.2-2 libpcre3_8.12-3 libpipeline1_1.1.0-1 libreadline6_6.1-3 libselinux1_2.0.96-1 libsepol1_2.0.42-1 libslang2_2.2.2-4 libss2_1.41.12-2 libstdc++6_4.5.2-5 libstdc++6-4.4-dev_4.4.5-13 libtext-charwidth-perl_0.04-6 libtext-iconv-perl_1.7-2 libtext-wrapi18n-perl_0.06-7 libtimedate-perl_1.2000-1 libunistring0_0.9.3-3 libunwind7_0.99-0.2 libunwind7-dev_0.99-0.2 libusb-0.1-4_2:0.1.12-17 libuuid1_2.17.2-9.1 libxml2_2.7.8.dfsg-2 linux-libc-dev_2.6.37-2 login_1:4.1.4.2+svn3283-3 lsb-base_3.2-27 lzma_4.43-14 make_3.81-8 man-db_2.5.9-4 mawk_1.3.3-15 mount_2.17.2-9.1 ncurses-base_5.8+20110307-1 ncurses-bin_5.8+20110307-1 passwd_1:4.1.4.2+svn3283-3 patch_2.6.1-1 perl_5.10.1-17 perl-base_5.10.1-17 perl-modules_5.10.1-17 po-debconf_1.0.16+nmu1 readline-common_6.1-3 sed_4.2.1-9 sensible-utils_0.0.6 sudo_1.7.4p6-1 sysv-rc_2.88dsf-13.1 sysvinit_2.88dsf-13.1 sysvinit-utils_2.88dsf-13.1 tar_1.25-3 tzdata_2011c-1 util-linux_2.17.2-9.1 xz-utils_5.0.0-2 zlib1g_1:1.2.3.4.dfsg-3 zlib1g-dev_1:1.2.3.4.dfsg-3
+Reading package lists...
+Building dependency tree...
+Reading state information...
+0 upgraded, 0 newly installed, 0 to remove and 6 not upgraded.
+Checking correctness of dependencies...
+Kernel: Linux 2.6.32-5-mckinley ia64 (ia64)
+Toolchain package versions: binutils_2.21.0.20110327-2 dpkg-dev_1.16.0.1 g++-4.4_4.4.5-15 gcc-4.4_4.4.5-15 libc6.1-dev_2.11.2-13 libstdc++6_4.6.0-2 libstdc++6-4.4-dev_4.4.5-15 linux-libc-dev_2.6.38-2
+Package versions: apt_0.8.13.2 base-files_6.2 base-passwd_3.5.22 bash_4.1-3 binutils_2.21.0.20110327-2 bsdmainutils_8.2.2 bsdutils_1:2.17.2-9.1 build-essential_11.5 bzip2_1.0.5-6 cdbs_0.4.92 coreutils_8.5-1 cpp_4:4.4.5-7 cpp-4.4_4.4.5-15 dash_0.5.5.1-7.4 debconf_1.5.38 debconf-english_1.5.38 debfoster_2.7-1.1 debhelper_8.1.3 debian-archive-keyring_2010.08.28 debianutils_3.4.4 diffutils_1:3.0-1 dpkg_1.16.0.1 dpkg-dev_1.16.0.1 e2fslibs_1.41.12-2 e2fsprogs_1.41.12-2 fakeroot_1.15.1-1 file_5.04-5 findutils_4.4.2-1+b1 g++_4:4.4.5-7 g++-4.4_4.4.5-15 gcc_4:4.4.5-7 gcc-4.4_4.4.5-15 gcc-4.4-base_4.4.5-15 gcc-4.5-base_4.5.2-8 gcc-4.6-base_4.6.0-2 gettext_0.18.1.1-3 gettext-base_0.18.1.1-3 gnupg_1.4.11-3 gpgv_1.4.11-3 grep_2.6.3-3 groff-base_1.21-5 gzip_1.3.12-9 hostname_3.06 html2text_1.3.2a-15 initscripts_2.88dsf-13.1 insserv_1.14.0-2.1 intltool-debian_0.35.0+20060710.1 libacl1_2.2.49-4 libattr1_1:2.4.44-2 libblkid1_2.17.2-9.1 libbz2-1.0_1.0.5-6 libc-bin_2.11.2-13 libc-dev-bin_2.11.2-13 libc6.1_2.11.2-13 libc6.1-dev_2.11.2-13 libcomerr2_1.41.12-2 libcroco3_0.6.2-1 libdb4.7_4.7.25-12 libdb4.8_4.8.30-5 libdpkg-perl_1.16.0.1 libgc1c2_1:7.1-7 libgcc1_1:4.6.0-2 libgdbm3_1.8.3-9 libglib2.0-0_2.28.4-1 libgmp10_2:5.0.1+dfsg-7 libgomp1_4.6.0-2 liblzma2_5.0.0-2 libmagic1_5.04-5 libmpfr4_3.0.0-9 libncurses5_5.8+20110307-1 libpam-modules_1.1.2-2 libpam-runtime_1.1.2-2 libpam0g_1.1.2-2 libpcre3_8.12-3 libpipeline1_1.2.0-1 libreadline6_6.1-3 libselinux1_2.0.98-1 libsepol1_2.0.42-1 libslang2_2.2.3-2 libss2_1.41.12-2 libstdc++6_4.6.0-2 libstdc++6-4.4-dev_4.4.5-15 libtext-charwidth-perl_0.04-6 libtext-iconv-perl_1.7-2 libtext-wrapi18n-perl_0.06-7 libtimedate-perl_1.2000-1 libunistring0_0.9.3-3 libunwind7_0.99-0.2 libunwind7-dev_0.99-0.2 libusb-0.1-4_2:0.1.12-17 libuuid1_2.17.2-9.1 libxml2_2.7.8.dfsg-2 linux-libc-dev_2.6.38-2 login_1:4.1.4.2+svn3283-3 lsb-base_3.2-27 make_3.81-8 man-db_2.6.0.1-1 mawk_1.3.3-15 mount_2.17.2-9.1 ncurses-base_5.8+20110307-1 ncurses-bin_5.8+20110307-1 passwd_1:4.1.4.2+svn3283-3 patch_2.6.1-1 perl_5.10.1-19 perl-base_5.10.1-19 perl-modules_5.10.1-19 po-debconf_1.0.16+nmu1 readline-common_6.1-3 sed_4.2.1-9 sensible-utils_0.0.6 sudo_1.7.4p6-1 sysv-rc_2.88dsf-13.1 sysvinit_2.88dsf-13.1 sysvinit-utils_2.88dsf-13.1 tar_1.25-3 tzdata_2011e-1 util-linux_2.17.2-9.1 xz-utils_5.0.0-2 zlib1g_1:1.2.3.4.dfsg-3 zlib1g-dev_1:1.2.3.4.dfsg-3
┌──────────────────────────────────────────────────────────────────────────────┐
│ Build │
@@ -224,14 +276,13 @@ Package versions: apt_0.8.12 base-files_6.1 base-passwd_3.5.22 bash_4.1-3 binuti
Unpack source
─────────────
-dpkg-source: warning: -sn is not a valid option for Dpkg::Source::Package::V3::quilt
gpgv: keyblock resource `/home/buildd/.gnupg/trustedkeys.gpg': file open error
-gpgv: Signature made Wed Jan 19 13:19:58 2011 UTC using RSA key ID 2295D502
+gpgv: Signature made Tue Apr 12 08:22:29 2011 UTC using RSA key ID 2295D502
gpgv: Can't check signature: public key not found
-dpkg-source: warning: failed to verify signature on ./tabix_0.2.3-1.dsc
-dpkg-source: info: extracting tabix in tabix-0.2.3
-dpkg-source: info: unpacking tabix_0.2.3.orig.tar.bz2
-dpkg-source: info: unpacking tabix_0.2.3-1.debian.tar.gz
+dpkg-source: warning: failed to verify signature on ./tabix_0.2.4-1.dsc
+dpkg-source: info: extracting tabix in tabix-0.2.4
+dpkg-source: info: unpacking tabix_0.2.4.orig.tar.bz2
+dpkg-source: info: unpacking tabix_0.2.4-1.debian.tar.gz
Check disc space
────────────────
@@ -246,41 +297,42 @@ dpkg-buildpackage: export CXXFLAGS from dpkg-buildflags (origin: vendor): -g -O2
dpkg-buildpackage: export FFLAGS from dpkg-buildflags (origin: vendor): -g -O2
dpkg-buildpackage: export LDFLAGS from dpkg-buildflags (origin: vendor):
dpkg-buildpackage: source package tabix
-dpkg-buildpackage: source version 0.2.3-1
- dpkg-source --before-build tabix-0.2.3
+dpkg-buildpackage: source version 0.2.4-1
+ dpkg-source --before-build tabix-0.2.4
dpkg-buildpackage: host architecture ia64
- /usr/bin/fakeroot debian/rules clean
+ fakeroot debian/rules clean
test -x debian/rules
dh_testroot
rm -f debian/stamp-makefile-build debian/stamp-makefile-install
/usr/bin/make -C . CFLAGS="-g -O2 -g -O2" CXXFLAGS="-g -O2 -g -O2" CPPFLAGS="" LDFLAGS="" -k clean
-make[1]: Entering directory `/build/buildd-tabix_0.2.3-1-ia64-pPR382/tabix-0.2.3'
-make[2]: Entering directory `/build/buildd-tabix_0.2.3-1-ia64-pPR382/tabix-0.2.3'
+make[1]: Entering directory `/build/buildd-tabix_0.2.4-1-ia64-61j0_s/tabix-0.2.4'
+make[2]: Entering directory `/build/buildd-tabix_0.2.4-1-ia64-61j0_s/tabix-0.2.4'
rm -fr gmon.out *.o a.out *.dSYM tabix bgzip *~ *.a tabix.aux tabix.log tabix.pdf *.class libtabix.*.dylib libtabix.so*
-make[2]: Leaving directory `/build/buildd-tabix_0.2.3-1-ia64-pPR382/tabix-0.2.3'
-make[1]: Leaving directory `/build/buildd-tabix_0.2.3-1-ia64-pPR382/tabix-0.2.3'
+make[2]: Leaving directory `/build/buildd-tabix_0.2.4-1-ia64-61j0_s/tabix-0.2.4'
+make[1]: Leaving directory `/build/buildd-tabix_0.2.4-1-ia64-61j0_s/tabix-0.2.4'
dh_clean
debian/rules build
test -x debian/rules
mkdir -p "."
/usr/share/cdbs/1/rules/buildcore.mk:109: WARNING: DEB_COMPRESS_EXCLUDE is a deprecated variable
/usr/bin/make -C . CFLAGS="-g -O2 -g -O2" CXXFLAGS="-g -O2 -g -O2" CPPFLAGS="" LDFLAGS=""
-make[1]: Entering directory `/build/buildd-tabix_0.2.3-1-ia64-pPR382/tabix-0.2.3'
-make[2]: Entering directory `/build/buildd-tabix_0.2.3-1-ia64-pPR382/tabix-0.2.3'
+make[1]: Entering directory `/build/buildd-tabix_0.2.4-1-ia64-61j0_s/tabix-0.2.4'
+make[2]: Entering directory `/build/buildd-tabix_0.2.4-1-ia64-61j0_s/tabix-0.2.4'
gcc -c -g -O2 -g -O2 -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE bgzf.c -o bgzf.o
gcc -c -g -O2 -g -O2 -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE kstring.c -o kstring.o
gcc -c -g -O2 -g -O2 -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE knetfile.c -o knetfile.o
gcc -c -g -O2 -g -O2 -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE index.c -o index.o
-ar -cru libtabix.a bgzf.o kstring.o knetfile.o index.o
+gcc -c -g -O2 -g -O2 -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE bedidx.c -o bedidx.o
+ar -cru libtabix.a bgzf.o kstring.o knetfile.o index.o bedidx.o
gcc -c -g -O2 -g -O2 -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE main.c -o main.o
gcc -g -O2 -g -O2 -o tabix main.o -lm -lz -L. -ltabix
gcc -c -g -O2 -g -O2 -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE bgzip.c -o bgzip.o
gcc -g -O2 -g -O2 -o bgzip bgzip.o bgzf.o knetfile.o -lz
-make[2]: Leaving directory `/build/buildd-tabix_0.2.3-1-ia64-pPR382/tabix-0.2.3'
-make[1]: Leaving directory `/build/buildd-tabix_0.2.3-1-ia64-pPR382/tabix-0.2.3'
+make[2]: Leaving directory `/build/buildd-tabix_0.2.4-1-ia64-61j0_s/tabix-0.2.4'
+make[1]: Leaving directory `/build/buildd-tabix_0.2.4-1-ia64-61j0_s/tabix-0.2.4'
touch debian/stamp-makefile-build
DEB_MAKE_CHECK_TARGET unset, not running checks
- /usr/bin/fakeroot debian/rules binary-arch
+ fakeroot debian/rules binary-arch
test -x debian/rules
dh_testroot
dh_prep
@@ -322,58 +374,59 @@ dpkg-shlibdeps: warning: dependency on libm.so.6.1 could be avoided if "debian/t
dh_gencontrol -ptabix
dh_md5sums -ptabix
dh_builddeb -ptabix
-dpkg-deb: building package `tabix' in `../tabix_0.2.3-1_ia64.deb'.
- dpkg-genchanges -B -mia64 Build Daemon (alkman) <buildd_ia64-alkman at buildd.debian.org> >../tabix_0.2.3-1_ia64.changes
+dpkg-deb: building package `tabix' in `../tabix_0.2.4-1_ia64.deb'.
+ dpkg-genchanges -B -mia64 Build Daemon (alkman) <buildd_ia64-alkman at buildd.debian.org> >../tabix_0.2.4-1_ia64.changes
dpkg-genchanges: arch-specific upload - not including arch-independent packages
dpkg-genchanges: binary-only upload - not including any source code
- dpkg-source --after-build tabix-0.2.3
+ dpkg-source --after-build tabix-0.2.4
dpkg-buildpackage: binary only upload (no source included)
────────────────────────────────────────────────────────────────────────────────
-Build finished at 20110316-1225
+Build finished at 20110412-0950
-tabix_0.2.3-1_ia64.changes:
+tabix_0.2.4-1_ia64.changes:
Format: 1.8
-Date: Wed, 19 Jan 2011 22:16:39 +0900
+Date: Tue, 12 Apr 2011 17:15:33 +0900
Source: tabix
Binary: tabix
Architecture: ia64
-Version: 0.2.3-1
+Version: 0.2.4-1
Distribution: sid
Urgency: low
Maintainer: ia64 Build Daemon (alkman) <buildd_ia64-alkman at buildd.debian.org>
Changed-By: Charles Plessy <plessy at debian.org>
Description:
tabix - generic indexer for TAB-delimited genome position files
-Closes: 606446
Changes:
- tabix (0.2.3-1) unstable; urgency=low
+ tabix (0.2.4-1) unstable; urgency=low
.
- * Initial release (Closes: #606446)
+ * New upstream release.
+ * Incremented Standards-Version to reflect conformance with Policy 3.9.2
+ (debian/control).
Checksums-Sha1:
- 46ddf977a74dfbae10e9879500c23e5c0b87f99d 76550 tabix_0.2.3-1_ia64.deb
+ 66dea7fbd8bed6ccb9a3466d21da537b9de8d1ec 84440 tabix_0.2.4-1_ia64.deb
Checksums-Sha256:
- f2c8c249ad979cf01a4cf65b190a6e880ab0d86258256babbb571578dea4f8c9 76550 tabix_0.2.3-1_ia64.deb
+ 40bd5809b7adf179746c4fe440ca9678087c4def762d8fd35aa0f9e53973fa65 84440 tabix_0.2.4-1_ia64.deb
Files:
- bb6c6da0e97f9f3b52a57605573e892b 76550 science optional tabix_0.2.3-1_ia64.deb
+ 719cfaf12398a97526dc38513ffcd23b 84440 science optional tabix_0.2.4-1_ia64.deb
┌──────────────────────────────────────────────────────────────────────────────┐
│ Package contents │
└──────────────────────────────────────────────────────────────────────────────┘
-tabix_0.2.3-1_ia64.deb
+tabix_0.2.4-1_ia64.deb
──────────────────────
new debian package, version 2.0.
- size 76550 bytes: control archive= 957 bytes.
- 779 bytes, 16 lines control
+ size 84440 bytes: control archive= 960 bytes.
+ 786 bytes, 16 lines control
587 bytes, 9 lines md5sums
Package: tabix
- Version: 0.2.3-1
+ Version: 0.2.4-1
Architecture: ia64
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
- Installed-Size: 304
- Depends: libc6.1 (>= 2.7), zlib1g (>= 1:1.1.4)
+ Installed-Size: 320
+ Depends: libc6.1 (>= 2.7), zlib1g (>= 1:1.2.3.3.dfsg)
Section: science
Priority: optional
Homepage: http://samtools.sourceforge.net/tabix.shtml
@@ -385,25 +438,25 @@ tabix_0.2.3-1_ia64.deb
chromosomal coordinates. Fast data retrieval also works over network if an URI
is given as a file name.
-drwxr-xr-x root/root 0 2011-03-16 12:25 ./
-drwxr-xr-x root/root 0 2011-03-16 12:25 ./usr/
-drwxr-xr-x root/root 0 2011-03-16 12:25 ./usr/bin/
--rwxr-xr-x root/root 116272 2011-03-16 12:25 ./usr/bin/tabix
--rwxr-xr-x root/root 51344 2011-03-16 12:25 ./usr/bin/bgzip
-drwxr-xr-x root/root 0 2011-03-16 12:25 ./usr/share/
-drwxr-xr-x root/root 0 2011-03-16 12:25 ./usr/share/man/
-drwxr-xr-x root/root 0 2011-03-16 12:25 ./usr/share/man/man1/
--rw-r--r-- root/root 1716 2011-03-16 12:25 ./usr/share/man/man1/tabix.1.gz
-drwxr-xr-x root/root 0 2011-03-16 12:25 ./usr/share/doc/
-drwxr-xr-x root/root 0 2011-03-16 12:25 ./usr/share/doc/tabix/
--rw-r--r-- root/root 944 2010-12-08 17:38 ./usr/share/doc/tabix/NEWS.gz
--rw-r--r-- root/root 154 2011-01-19 13:16 ./usr/share/doc/tabix/changelog.Debian.gz
--rw-r--r-- root/root 2920 2010-12-08 17:38 ./usr/share/doc/tabix/changelog.gz
-drwxr-xr-x root/root 0 2011-03-16 12:25 ./usr/share/doc/tabix/examples/
--rw-r--r-- root/root 260 2010-12-08 17:34 ./usr/share/doc/tabix/examples/example.gtf.gz.tbi
+drwxr-xr-x root/root 0 2011-04-12 09:50 ./
+drwxr-xr-x root/root 0 2011-04-12 09:50 ./usr/
+drwxr-xr-x root/root 0 2011-04-12 09:50 ./usr/bin/
+-rwxr-xr-x root/root 135728 2011-04-12 09:50 ./usr/bin/tabix
+-rwxr-xr-x root/root 52096 2011-04-12 09:50 ./usr/bin/bgzip
+drwxr-xr-x root/root 0 2011-04-12 09:50 ./usr/share/
+drwxr-xr-x root/root 0 2011-04-12 09:50 ./usr/share/man/
+drwxr-xr-x root/root 0 2011-04-12 09:50 ./usr/share/man/man1/
+-rw-r--r-- root/root 1834 2011-04-12 09:50 ./usr/share/man/man1/tabix.1.gz
+drwxr-xr-x root/root 0 2011-04-12 09:50 ./usr/share/doc/
+drwxr-xr-x root/root 0 2011-04-12 09:50 ./usr/share/doc/tabix/
+-rw-r--r-- root/root 1169 2011-04-10 19:21 ./usr/share/doc/tabix/NEWS.gz
+-rw-r--r-- root/root 262 2011-04-12 08:16 ./usr/share/doc/tabix/changelog.Debian.gz
+-rw-r--r-- root/root 3487 2011-04-10 19:21 ./usr/share/doc/tabix/changelog.gz
+drwxr-xr-x root/root 0 2011-04-12 09:50 ./usr/share/doc/tabix/examples/
+-rw-r--r-- root/root 259 2011-04-10 19:21 ./usr/share/doc/tabix/examples/example.gtf.gz.tbi
-rw-r--r-- root/root 3778 2010-12-08 17:34 ./usr/share/doc/tabix/examples/example.gtf.gz
--rw-r--r-- root/root 1346 2011-01-19 13:03 ./usr/share/doc/tabix/copyright
-lrwxrwxrwx root/root 0 2011-03-16 12:25 ./usr/share/man/man1/bgzip.1.gz -> tabix.1.gz
+-rw-r--r-- root/root 1473 2011-04-12 07:17 ./usr/share/doc/tabix/copyright
+lrwxrwxrwx root/root 0 2011-04-12 09:50 ./usr/share/man/man1/bgzip.1.gz -> tabix.1.gz
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -412,9 +465,31 @@ lrwxrwxrwx root/root 0 2011-03-16 12:25 ./usr/share/man/man1/bgzip.1.gz
Built successfully
────────────────────────────────────────────────────────────────────────────────
-Purging /var/lib/schroot/mount/sid-ia64-sbuild-0795d018-3e5c-4ee3-bb0e-2b03bae03d6b/build/buildd-tabix_0.2.3-1-ia64-pPR382
-Not removing build depends: cloned chroot in use
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Post Build │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+Purging /var/lib/schroot/mount/sid-ia64-sbuild-4a9a445b-66d8-40cb-aaf1-160d11fa432a/build/buildd-tabix_0.2.4-1-ia64-61j0_s
+Not cleaning session: cloned chroot in use
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Summary │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+Architecture: ia64
+Build-Space: 2648
+Build-Time: 29
+Distribution: sid
+Install-Time: 55
+Job: tabix_0.2.4-1
+Package: tabix
+Package-Time: 133
+Source-Version: 0.2.4-1
+Space: 2648
+Status: successful
+Version: 0.2.4-1
────────────────────────────────────────────────────────────────────────────────
-Finished at 20110316-1225
-Build needed 00:02:04, 2352k disc space
+Finished at 20110412-0950
+Build needed 00:02:13, 2648k disc space
diff --git a/info b/info
index 05e0566..37c7420 100644
--- a/info
+++ b/info
@@ -1,13 +1,11 @@
-i386~1300273043~sid~successful
-s390~1300274293~sid~successful
-sparc~1300274350~sid~successful
-powerpc~1300274534~sid~successful
-kfreebsd-i386~1300275072~sid~successful
-ia64~1300278326~sid~successful
-kfreebsd-amd64~1300287676~sid~successful
-armel~1300287787~sid~successful
-alpha~1300352030~sid~successful
-mipsel~1300361450~sid~successful
-mips~1300501768~sid~successful
-hurd-i386~1300620130~sid~successful
-hppa~1301182517~sid~successful
+i386~1302601576~sid~successful
+powerpc~1302601583~sid~successful
+kfreebsd-i386~1302601711~sid~successful
+s390~1302601826~sid~successful
+ia64~1302601859~sid~successful
+kfreebsd-amd64~1302601979~sid~successful
+sparc~1302602242~sid~successful
+armel~1302603948~sid~successful
+hurd-i386~1302606089~sid~successful
+mips~1302607404~sid~successful
+mipsel~1302632167~sid~successful
diff --git a/kfreebsd-amd64.log b/kfreebsd-amd64.log
index 80d4c53..90e0765 100644
--- a/kfreebsd-amd64.log
+++ b/kfreebsd-amd64.log
@@ -1,58 +1,57 @@
-From buildd at fano.debian.org Wed Mar 16 15:01:14 2011
-Return-path: <buildd at fano.debian.org>
-Received: from merikanto.debian.org ([2001:858:2:2:216:35ff:fec4:a49a])
+From buildd at fasch.debian.org Tue Apr 12 09:52:58 2011
+Return-path: <buildd at fasch.debian.org>
+Received: from kokkonen.debian.org ([2001:41b8:202:deb:216:35ff:fec4:6340])
from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
- CN=merikanto.debian.org,
- EMAIL=hostmaster at merikanto.debian.org (verified)
+ CN=kokkonen.debian.org,
+ EMAIL=hostmaster at kokkonen.debian.org (verified)
by grieg.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
- (Exim 4.69) (envelope-from <buildd at fano.debian.org>)
- id 1PzsDp-0001ht-BJ
- for logs at buildd.debian.org; Wed, 16 Mar 2011 15:01:13 +0000
-Received: from fano.debian.org ([206.12.19.110])
+ (Exim 4.69) (envelope-from <buildd at fasch.debian.org>)
+ id 1Q9aHK-0004Rj-Hv
+ for logs at buildd.debian.org; Tue, 12 Apr 2011 09:52:58 +0000
+Received: from fasch.debian.org ([194.177.211.201])
from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
- CN=fano.debian.org, EMAIL=hostmaster at fano.debian.org (verified)
- by merikanto.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
- (Exim 4.69) (envelope-from <buildd at fano.debian.org>)
- id 1PzsDl-00030A-7z; Wed, 16 Mar 2011 15:01:09 +0000
-Received: from buildd by fano.debian.org with local (Exim 4.72)
- (envelope-from <buildd at fano.debian.org>)
- id 1PzsDi-0000PW-LF; Wed, 16 Mar 2011 15:01:06 +0000
-Date: Wed, 16 Mar 2011 15:01:06 +0000
-Message-Id: <E1PzsDi-0000PW-LF at fano.debian.org>
-From: buildd on fano <buildd at fano.debian.org>
+ CN=fasch.debian.org, EMAIL=hostmaster at fasch.debian.org (verified)
+ by kokkonen.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
+ (Exim 4.69) (envelope-from <buildd at fasch.debian.org>)
+ id 1Q9aHG-0001nD-43; Tue, 12 Apr 2011 09:52:54 +0000
+Received: from buildd by fasch.debian.org with local (Exim 4.72)
+ (envelope-from <buildd at fasch.debian.org>)
+ id 1Q9aHD-000Cni-6M; Tue, 12 Apr 2011 09:52:51 +0000
+Date: Tue, 12 Apr 2011 09:52:51 +0000
+Message-Id: <E1Q9aHD-000Cni-6M at fasch.debian.org>
+From: buildd on fasch <buildd at fasch.debian.org>
To: logs at buildd.debian.org,aurelien at aurel32.net,kibi at debian-ports.org
-Subject: Log for successful build of tabix_0.2.3-1 on kfreebsd-amd64 (dist=sid)
+Subject: Log for successful build of tabix_0.2.4-1 on kfreebsd-amd64 (dist=sid)
Content-Type: text/plain; charset=UTF-8
Content-Transfer-Encoding: 8bit
Delivered-To: logs at buildd.debian.org
-sbuild (Debian sbuild) 0.60.0 (23 Feb 2010) on fano.debian.org
+sbuild (Debian sbuild) 0.61.0 (23 Feb 2011) on fasch.debian.org
╔══════════════════════════════════════════════════════════════════════════════╗
-║ tabix 0.2.3-1 (kfreebsd-amd64) 16 Mar 2011 15:00 ║
+║ tabix 0.2.4-1 (kfreebsd-amd64) 12 Apr 2011 09:50 ║
╚══════════════════════════════════════════════════════════════════════════════╝
Package: tabix
-Version: 0.2.3-1
+Version: 0.2.4-1
+Source Version: 0.2.4-1
Architecture: kfreebsd-amd64
-Chroot Build Dir: /var/lib/schroot/mount/sid-ka-sbuild-1300287611-503/build/buildd-tabix_0.2.3-1-kfreebsd-amd64-F2Ymhg
-Start Time: 20110316-1500
-Hit http://mirror-ubc.debian.org sid InRelease
-Hit http://mirror-ubc.debian.org sid/main Sources/DiffIndex
+Hit http://ftp.gr.debian.org sid InRelease
+Hit http://ftp.gr.debian.org sid/main Sources/DiffIndex
Hit http://incoming.debian.org sid InRelease
Ign http://incoming.debian.org InRelease
-Hit http://mirror-ubc.debian.org sid/contrib Sources/DiffIndex
-Hit http://mirror-ubc.debian.org sid/non-free Sources/DiffIndex
-Hit http://mirror-ubc.debian.org sid/main kfreebsd-amd64 Packages/DiffIndex
-Hit http://mirror-ubc.debian.org sid/contrib kfreebsd-amd64 Packages/DiffIndex
-Hit http://mirror-ubc.debian.org sid/non-free kfreebsd-amd64 Packages/DiffIndex
-Ign http://mirror-ubc.debian.org sid/contrib TranslationIndex
-Hit http://mirror-ubc.debian.org sid/main TranslationIndex
-Ign http://mirror-ubc.debian.org sid/non-free TranslationIndex
-Hit http://mirror-ubc.debian.org sid/non-free kfreebsd-amd64 Packages
-Ign http://mirror-ubc.debian.org sid/contrib Translation-en
-Ign http://mirror-ubc.debian.org sid/non-free Translation-en
-Hit http://incoming.debian.org Release.gpg
+Hit http://ftp.gr.debian.org sid/contrib Sources/DiffIndex
+Hit http://ftp.gr.debian.org sid/non-free Sources/DiffIndex
+Hit http://ftp.gr.debian.org sid/main kfreebsd-amd64 Packages/DiffIndex
+Hit http://ftp.gr.debian.org sid/contrib kfreebsd-amd64 Packages/DiffIndex
+Hit http://ftp.gr.debian.org sid/non-free kfreebsd-amd64 Packages/DiffIndex
+Ign http://ftp.gr.debian.org sid/contrib TranslationIndex
+Hit http://ftp.gr.debian.org sid/main TranslationIndex
+Ign http://ftp.gr.debian.org sid/non-free TranslationIndex
+Get:1 http://incoming.debian.org Release.gpg [836 B]
+Hit http://ftp.gr.debian.org sid/non-free kfreebsd-amd64 Packages
+Ign http://ftp.gr.debian.org sid/contrib Translation-en
+Ign http://ftp.gr.debian.org sid/non-free Translation-en
Hit http://incoming.debian.org sid/main Sources/DiffIndex
Hit http://incoming.debian.org sid/contrib Sources/DiffIndex
Hit http://incoming.debian.org sid/non-free Sources/DiffIndex
@@ -62,13 +61,14 @@ Hit http://incoming.debian.org sid/non-free kfreebsd-amd64 Packages/DiffIndex
Ign http://incoming.debian.org sid/contrib TranslationIndex
Hit http://incoming.debian.org sid/main TranslationIndex
Ign http://incoming.debian.org sid/non-free TranslationIndex
-Hit http://incoming.debian.org Release
+Get:2 http://incoming.debian.org Release [1604 B]
Hit http://incoming.debian.org sid/non-free kfreebsd-amd64 Packages
-Hit http://incoming.debian.org Sources
-Hit http://incoming.debian.org Packages
+Get:3 http://incoming.debian.org Sources [48.9 kB]
+Get:4 http://incoming.debian.org Packages [773 kB]
Ign http://incoming.debian.org sid/contrib Translation-en
Ign http://incoming.debian.org sid/non-free Translation-en
Ign http://incoming.debian.org Translation-en
+Fetched 825 kB in 5s (159 kB/s)
Reading package lists...
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -89,75 +89,119 @@ Building dependency tree...
Reading state information...
NOTICE: 'tabix' packaging is maintained in the 'Git' version control system at:
git://git.debian.org/debian-med/tabix.git
-Need to get 50.4 kB of source archives.
-Get:1 http://incoming.debian.org/debian/ sid/main tabix 0.2.3-1 (dsc) [1882 B]
-Get:2 http://incoming.debian.org/debian/ sid/main tabix 0.2.3-1 (tar) [46.4 kB]
-Get:3 http://incoming.debian.org/debian/ sid/main tabix 0.2.3-1 (diff) [2130 B]
-Fetched 50.4 kB in 1s (44.6 kB/s)
+Need to get 58.4 kB of source archives.
+Get:1 http://incoming.debian.org/buildd-unstable/ tabix 0.2.4-1 (dsc) [1882 B]
+Get:2 http://incoming.debian.org/buildd-unstable/ tabix 0.2.4-1 (tar) [54.2 kB]
+Get:3 http://incoming.debian.org/buildd-unstable/ tabix 0.2.4-1 (diff) [2322 B]
+Fetched 58.4 kB in 1s (52.8 kB/s)
Download complete and in download only mode
Check arch
──────────
-** Using build dependencies supplied by package:
-Build-Depends: cdbs, debhelper (>= 8), zlib1g-dev
┌──────────────────────────────────────────────────────────────────────────────┐
-│ Install build dependencies (internal resolver) │
+│ Install core build dependencies (internal resolver) │
└──────────────────────────────────────────────────────────────────────────────┘
-Checking for already installed source dependencies...
+Build-Depends: build-essential, fakeroot
+Checking for already installed dependencies...
+build-essential: already installed (11.5)
+fakeroot: already installed (1.15.1-1)
+Checking for dependency conflicts...
+Installing positive dependencies:
+Reading package lists...
+Building dependency tree...
+Reading state information...
+The following packages were automatically installed and are no longer required:
+ libpipeline1 libpcre3 groff-base libssl0.9.8 man-db
+Use 'apt-get autoremove' to remove them.
+0 upgraded, 0 newly installed, 0 to remove and 7 not upgraded.
+Removing negative dependencies:
+Reading package lists...
+Building dependency tree...
+Reading state information...
+The following packages were automatically installed and are no longer required:
+ libpipeline1 libpcre3 groff-base libssl0.9.8 man-db
+Use 'apt-get autoremove' to remove them.
+0 upgraded, 0 newly installed, 0 to remove and 7 not upgraded.
+Checking correctness of dependencies...
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Install tabix build dependencies (internal resolver) │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+Build-Depends: base-files, base-passwd, bash, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, freebsd-utils, grep, gzip, hostname, ncurses-base, ncurses-bin, perl-base, sed, login, sysvinit-utils, sysvinit, tar, bsdutils, util-linux, libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), cdbs, debhelper (>= 8), zlib1g-dev
+Checking for already installed dependencies...
+base-files: already installed (6.3)
+base-passwd: already installed (3.5.22)
+bash: already installed (4.1-3)
+coreutils: already installed (8.5-1)
+dash: already installed (0.5.5.1-7.4)
+debianutils: already installed (3.4.4)
+diffutils: already installed (1:3.0-1)
+dpkg: already installed (1.16.0.1)
+e2fsprogs: already installed (1.41.12-2)
+findutils: already installed (4.4.2-1)
+freebsd-utils: already installed (8.1-4+b1)
+grep: already installed (2.6.3-3)
+gzip: already installed (1.3.12-9)
+hostname: already installed (3.06)
+ncurses-base: already installed (5.8+20110307-1)
+ncurses-bin: already installed (5.9-1)
+perl-base: already installed (5.10.1-19)
+sed: already installed (4.2.1-9)
+login: already installed (1:4.1.4.2+svn3283-3)
+sysvinit-utils: already installed (2.88dsf-13.1)
+sysvinit: already installed (2.88dsf-13.1)
+tar: already installed (1.25-3)
+bsdutils: already installed (1:2.17.2-9.1)
+util-linux: already installed (2.17.2-9.1)
+libc6-dev: already installed (~*=PROVIDED=*=)
+gcc: already installed (4:4.5.2-5 >= 4:4.4.3 is satisfied)
+g++: already installed (4:4.5.2-5 >= 4:4.4.3 is satisfied)
+make: already installed (3.81-8.1)
+dpkg-dev: already installed (1.16.0.1 >= 1.13.5 is satisfied)
cdbs: missing
debhelper: missing
-Using default version 8.1.2
+Using default version 8.1.3
zlib1g-dev: missing
-Checking for source dependency conflicts...
+Checking for dependency conflicts...
Installing positive dependencies: cdbs debhelper zlib1g-dev
Reading package lists...
Building dependency tree...
Reading state information...
-The following packages were automatically installed and are no longer required:
- libppl7 libppl-c2
+The following package was automatically installed and is no longer required:
+ libssl0.9.8
Use 'apt-get autoremove' to remove them.
The following extra packages will be installed:
- file gettext gettext-base groff-base html2text intltool-debian libcroco3
- libglib2.0-0 libmagic1 libpcre3 libpipeline1 libunistring0 libxml2 man-db
- po-debconf
+ file gettext gettext-base html2text intltool-debian libcroco3 libglib2.0-0
+ libmagic1 libunistring0 libxml2 po-debconf
Suggested packages:
- devscripts doc-base dh-make gettext-doc groff less www-browser
- libmail-box-perl
+ devscripts doc-base dh-make gettext-doc libmail-box-perl
Recommended packages:
autotools-dev curl wget lynx-cur autopoint libglib2.0-data shared-mime-info
xml-core libmail-sendmail-perl
The following NEW packages will be installed:
- cdbs debhelper file gettext gettext-base groff-base html2text
- intltool-debian libcroco3 libglib2.0-0 libmagic1 libpcre3 libpipeline1
- libunistring0 libxml2 man-db po-debconf zlib1g-dev
+ cdbs debhelper file gettext gettext-base html2text intltool-debian libcroco3
+ libglib2.0-0 libmagic1 libunistring0 libxml2 po-debconf zlib1g-dev
debconf: delaying package configuration, since apt-utils is not installed
-0 upgraded, 18 newly installed, 0 to remove and 6 not upgraded.
-Need to get 0 B/10.4 MB of archives.
-After this operation, 27.3 MB of additional disk space will be used.
-Selecting previously deselected package groff-base.
-(Reading database ... 11964 files and directories currently installed.)
-Unpacking groff-base (from .../groff-base_1.21-4_kfreebsd-amd64.deb) ...
-Selecting previously deselected package libpipeline1.
-Unpacking libpipeline1 (from .../libpipeline1_1.1.0-1_kfreebsd-amd64.deb) ...
-Selecting previously deselected package man-db.
-Unpacking man-db (from .../man-db_2.5.9-4_kfreebsd-amd64.deb) ...
+0 upgraded, 14 newly installed, 0 to remove and 7 not upgraded.
+Need to get 0 B/7956 kB of archives.
+After this operation, 21.3 MB of additional disk space will be used.
Selecting previously deselected package libmagic1.
+(Reading database ... 13818 files and directories currently installed.)
Unpacking libmagic1 (from .../libmagic1_5.04-5_kfreebsd-amd64.deb) ...
Selecting previously deselected package file.
Unpacking file (from .../file_5.04-5_kfreebsd-amd64.deb) ...
Selecting previously deselected package gettext-base.
Unpacking gettext-base (from .../gettext-base_0.18.1.1-3_kfreebsd-amd64.deb) ...
-Selecting previously deselected package libpcre3.
-Unpacking libpcre3 (from .../libpcre3_8.12-3_kfreebsd-amd64.deb) ...
Selecting previously deselected package libxml2.
Unpacking libxml2 (from .../libxml2_2.7.8.dfsg-2_kfreebsd-amd64.deb) ...
Selecting previously deselected package html2text.
Unpacking html2text (from .../html2text_1.3.2a-15_kfreebsd-amd64.deb) ...
Selecting previously deselected package libglib2.0-0.
-Unpacking libglib2.0-0 (from .../libglib2.0-0_2.28.2-1_kfreebsd-amd64.deb) ...
+Unpacking libglib2.0-0 (from .../libglib2.0-0_2.28.4-1_kfreebsd-amd64.deb) ...
Selecting previously deselected package libcroco3.
Unpacking libcroco3 (from .../libcroco3_0.6.2-1_kfreebsd-amd64.deb) ...
Selecting previously deselected package libunistring0.
@@ -169,36 +213,39 @@ Unpacking intltool-debian (from .../intltool-debian_0.35.0+20060710.1_all.deb) .
Selecting previously deselected package po-debconf.
Unpacking po-debconf (from .../po-debconf_1.0.16+nmu1_all.deb) ...
Selecting previously deselected package debhelper.
-Unpacking debhelper (from .../debhelper_8.1.2_all.deb) ...
+Unpacking debhelper (from .../debhelper_8.1.3_all.deb) ...
Selecting previously deselected package cdbs.
Unpacking cdbs (from .../archives/cdbs_0.4.92_all.deb) ...
Selecting previously deselected package zlib1g-dev.
Unpacking zlib1g-dev (from .../zlib1g-dev_1%3a1.2.3.4.dfsg-3_kfreebsd-amd64.deb) ...
-Setting up groff-base (1.21-4) ...
-Setting up libpipeline1 (1.1.0-1) ...
-Setting up man-db (2.5.9-4) ...
-Building database of manual pages ...
+Processing triggers for man-db ...
Setting up libmagic1 (5.04-5) ...
Setting up file (5.04-5) ...
Setting up gettext-base (0.18.1.1-3) ...
-Setting up libpcre3 (8.12-3) ...
Setting up libxml2 (2.7.8.dfsg-2) ...
Setting up html2text (1.3.2a-15) ...
-Setting up libglib2.0-0 (2.28.2-1) ...
+Setting up libglib2.0-0 (2.28.4-1) ...
No schema files found: doing nothing.
Setting up libcroco3 (0.6.2-1) ...
Setting up libunistring0 (0.9.3-3) ...
Setting up gettext (0.18.1.1-3) ...
Setting up intltool-debian (0.35.0+20060710.1) ...
Setting up po-debconf (1.0.16+nmu1) ...
-Setting up debhelper (8.1.2) ...
+Setting up debhelper (8.1.3) ...
Setting up cdbs (0.4.92) ...
Setting up zlib1g-dev (1:1.2.3.4.dfsg-3) ...
Removing negative dependencies:
-Checking correctness of source dependencies...
+Reading package lists...
+Building dependency tree...
+Reading state information...
+The following package was automatically installed and is no longer required:
+ libssl0.9.8
+Use 'apt-get autoremove' to remove them.
+0 upgraded, 0 newly installed, 0 to remove and 7 not upgraded.
+Checking correctness of dependencies...
Kernel: GNU/kFreeBSD 8.1-1-amd64 kfreebsd-amd64 (x86_64)
-Toolchain package versions: libc6-dev_ =*=NOT INSTALLED=*= dpkg-dev_1.15.8.10 libstdc++6_4.5.2-6 gcc-4.5_4.5.2-6 g++-4.5_4.5.2-6 binutils_2.21.0.20110302-2 libstdc++6-4.5-dev_4.5.2-6 libc0.1-dev_2.11.2-13 kfreebsd-kernel-headers_0.53
-Package versions: apt_0.8.12 base-files_6.1 base-passwd_3.5.22 bash_4.1-3 binutils_2.21.0.20110302-2 bsdmainutils_8.2.2 bsdutils_1:2.17.2-9.1 build-essential_11.5 bzip2_1.0.5-6 cdbs_0.4.92 coreutils_8.5-1 cpio_2.11-7 cpp_4:4.5.2-2 cpp-4.5_4.5.2-6 dash_0.5.5.1-7.4 debconf_1.5.38 debconf-i18n_1.5.38 debfoster_2.7-1.1 debhelper_8.1.2 debian-archive-keyring_2010.08.28 debianutils_3.4.4 diffutils_1:3.0-1 dpkg_1.15.8.10 dpkg-dev_1.15.8.10 e2fslibs_1.41.12-2 e2fsprogs_1.41.12-2 fakeroot_1.14.5-1+b1 file_5.04-5 findutils_4.4.2-1 freebsd-utils_8.1-4+b1 g++_4:4.5.2-2 g++-4.5_4.5.2-6 gcc_4:4.5.2-2 gcc-4.2-base_4.2.4-6 gcc-4.4-base_4.4.5-14 gcc-4.5_4.5.2-6 gcc-4.5-base_4.5.2-6 gettext_0.18.1.1-3 gettext-base_0.18.1.1-3 gnupg_1.4.11-3 gpgv_1.4.11-3 grep_2.6.3-3 groff-base_1.21-4 gzip_1.3.12-9 hostname_3.06 html2text_1.3.2a-15 initscripts_2.88dsf-13.1 insserv_1.14.0-2 intltool-debian_0.35.0+20060710.1 kfreebsd-kernel-headers_0.53 libacl1_2.2.49-4 libattr1_1:2.4.44-2 libblkid1_2.17.2-9.1 libbsd0_0.2.0-1 libbz2-1.0_1.0.5-6 libc-bin_2.11.2-13 libc-dev-bin_2.11.2-13 libc0.1_2.11.2-13 libc0.1-dev_2.11.2-13 libcam0_8.1-5 libcloog-ppl0_0.15.9-3 libcomerr2_1.41.12-2 libcroco3_0.6.2-1 libdb4.7_4.7.25-12 libdb4.8_4.8.30-5 libdpkg-perl_1.15.8.10 libedit2_2.11-20080614-2 libelfg0_0.8.13-1 libexpat1_2.0.1-7 libgc1c2_1:7.1-7 libgcc1_1:4.5.2-6 libgcrypt11_1.4.6-5 libgdbm3_1.8.3-9 libgeom0_8.1-5 libglib2.0-0_2.28.2-1 libgmp10_2:5.0.1+dfsg-6 libgmp3c2_2:4.3.2+dfsg-1 libgmpxx4ldbl_2:5.0.1+dfsg-6 libgnutls26_2.10.5-1 libgomp1_4.5.2-6 libgpg-error0_1.10-0.3 libkiconv4_8.1-5 libkvm0_8.1-5 libldap-2.4-2_2.4.23-7 liblocale-gettext-perl_1.05-6 liblzma2_5.0.0-2 libmagic1_5.04-5 libmpc2_0.9-2 libmpfr4_3.0.0-9 libncurses5_5.8+20110307-1 libncursesw5_5.8+20110307-1 libpam-modules_1.1.2-2 libpam-runtime_1.1.2-2 libpam0g_1.1.2-2 libpcre3_8.12-3 libpipeline1_1.1.0-1 libpng12-0_1.2.44-2 libppl-c2_0.10.2-8 libppl-c4_0.11.2-2 libppl7_0.10.2-8 libppl9_0.11.2-2 libpwl5_0.11.2-2 libreadline6_6.1-3 libsasl2-2_2.1.23.dfsg1-7 libsbuf0_8.1-5 libslang2_2.2.2-4 libss2_1.41.12-2 libstdc++6_4.5.2-6 libstdc++6-4.5-dev_4.5.2-6 libtasn1-3_2.9-2 libtext-charwidth-perl_0.04-6 libtext-iconv-perl_1.7-2 libtext-wrapi18n-perl_0.06-7 libtimedate-perl_1.2000-1 libunistring0_0.9.3-3 libusb-0.1-4_2:0.1.12-17 libuuid1_2.17.2-9.1 libxml2_2.7.8.dfsg-2 login_1:4.1.4.2+svn3283-3 lsb-base_3.2-27 lzma_4.43-14 make_3.81-8 man-db_2.5.9-4 mawk_1.3.3-15 ncurses-base_5.8+20110307-1 ncurses-bin_5.8+20110307-1 passwd_1:4.1.4.2+svn3283-3 patch_2.6.1-1 perl_5.10.1-17 perl-base_5.10.1-17 perl-modules_5.10.1-17 po-debconf_1.0.16+nmu1 procps_1:3.2.8-10 psmisc_22.13-1 readline-common_6.1-3 sed_4.2.1-9 sensible-utils_0.0.6 sudo_1.7.4p6-1 sysv-rc_2.88dsf-13.1 sysvinit_2.88dsf-13.1 sysvinit-utils_2.88dsf-13.1 tar_1.25-3 type-handling_0.2.23 tzdata_2011d-1 ufsutils_7.3-1+b1 util-linux_2.17.2-9.1 xz-utils_5.0.0-2 zlib1g_1:1.2.3.4.dfsg-3 zlib1g-dev_1:1.2.3.4.dfsg-3
+Toolchain package versions: binutils_2.21.0.20110327-2 dpkg-dev_1.16.0.1 g++-4.5_4.5.2-8 gcc-4.5_4.5.2-8 kfreebsd-kernel-headers_0.53 libc0.1-dev_2.11.2-13 libstdc++6_4.6.0-2 libstdc++6-4.5-dev_4.5.2-8
+Package versions: apt_0.8.13.2 base-files_6.3 base-passwd_3.5.22 bash_4.1-3 binutils_2.21.0.20110327-2 bsdmainutils_8.2.2 bsdutils_1:2.17.2-9.1 build-essential_11.5 bzip2_1.0.5-6 cdbs_0.4.92 coreutils_8.5-1 cpp_4:4.5.2-5 cpp-4.5_4.5.2-8 dash_0.5.5.1-7.4 debconf_1.5.38 debconf-english_1.5.38 debfoster_2.7-1.1 debhelper_8.1.3 debian-archive-keyring_2010.08.28 debianutils_3.4.4 diffutils_1:3.0-1 dpkg_1.16.0.1 dpkg-dev_1.16.0.1 e2fslibs_1.41.12-2 e2fsprogs_1.41.12-2 fakeroot_1.15.1-1 file_5.04-5 findutils_4.4.2-1 freebsd-utils_8.1-4+b1 g++_4:4.5.2-5 g++-4.5_4.5.2-8 gcc_4:4.5.2-5 gcc-4.4-base_4.4.5-15 gcc-4.5_4.5.2-8 gcc-4.5-base_4.5.2-8 gcc-4.6-base_4.6.0-2 gettext_0.18.1.1-3 gettext-base_0.18.1.1-3 gnupg_1.4.11-3 gpgv_1.4.11-3 grep_2.6.3-3 groff-base_1.21-5 gzip_1.3.12-9 hostname_3.06 html2text_1.3.2a-15 initscripts_2.88dsf-13.1 insserv_1.14.0-2.1 intltool-debian_0.35.0+20060710.1 kfreebsd-kernel-headers_0.53 libacl1_2.2.49-4 libattr1_1:2.4.44-2 libblkid1_2.17.2-9.1 libbsd0_0.2.0-1 libbz2-1.0_1.0.5-6 libc-bin_2.11.2-13 libc-dev-bin_2.11.2-13 libc0.1_2.11.2-13 libc0.1-dev_2.11.2-13 libcam0_8.1-5 libcloog-ppl0_0.15.9-3 libcomerr2_1.41.12-2 libcroco3_0.6.2-1 libdb4.7_4.7.25-12 libdb4.8_4.8.30-5 libdpkg-perl_1.16.0.1 libedit2_2.11-20080614-2 libelfg0_0.8.13-1 libexpat1_2.0.1-7 libgc1c2_1:7.1-7 libgcc1_1:4.6.0-2 libgcrypt11_1.4.6-5 libgdbm3_1.8.3-9 libgeom0_8.1-5 libglib2.0-0_2.28.4-1 libgmp10_2:5.0.1+dfsg-7 libgmpxx4ldbl_2:5.0.1+dfsg-7 libgnutls26_2.10.5-1+b1 libgomp1_4.6.0-2 libgpg-error0_1.10-0.3 libkiconv4_8.1-5 libkvm0_8.1-5 libldap-2.4-2_2.4.25-1 liblocale-gettext-perl_1.05-6 liblzma2_5.0.0-2 libmagic1_5.04-5 libmpc2_0.9-2 libmpfr4_3.0.0-9 libncurses5_5.9-1 libncursesw5_5.8+20110307-1 libpam-modules_1.1.2-2 libpam-runtime_1.1.2-2 libpam0g_1.1.2-2 libpcre3_8.12-3 libpipeline1_1.2.0-1 libpng12-0_1.2.44-2 libppl-c4_0.11.2-3 libppl9_0.11.2-3 libpwl5_0.11.2-3 libreadline6_6.1-3 libsasl2-2_2.1.23.dfsg1-8 libsbuf0_8.1-5 libslang2_2.2.3-3 libss2_1.41.12-2 libssl0.9.8_0.9.8o-7 libstdc++6_4.6.0-2 libstdc++6-4.5-dev_4.5.2-8 libtasn1-3_2.9-2 libtext-charwidth-perl_0.04-6 libtext-iconv-perl_1.7-2 libtext-wrapi18n-perl_0.06-7 libtimedate-perl_1.2000-1 libunistring0_0.9.3-3 libusb-0.1-4_2:0.1.12-17 libuuid1_2.17.2-9.1 libxml2_2.7.8.dfsg-2 login_1:4.1.4.2+svn3283-3 lsb-base_3.2-27 lzma_4.43-14 make_3.81-8.1 man-db_2.5.9-4 mawk_1.3.3-15 ncurses-base_5.8+20110307-1 ncurses-bin_5.9-1 passwd_1:4.1.4.2+svn3283-3 patch_2.6.1-1 perl_5.10.1-19 perl-base_5.10.1-19 perl-modules_5.10.1-19 po-debconf_1.0.16+nmu1 procps_1:3.2.8-10 readline-common_6.1-3 sed_4.2.1-9 sensible-utils_0.0.6 sudo_1.7.4p6-1 sysv-rc_2.88dsf-13.1 sysvinit_2.88dsf-13.1 sysvinit-utils_2.88dsf-13.1 tar_1.25-3 type-handling_0.2.23 tzdata_2011e-1 ufsutils_7.3-1+b1 util-linux_2.17.2-9.1 vim_2:7.3.035+hg~8fdc12103333-1 vim-common_2:7.3.035+hg~8fdc12103333-1 vim-runtime_2:7.3.035+hg~8fdc12103333-1 xz-utils_5.0.0-2 zlib1g_1:1.2.3.4.dfsg-3 zlib1g-dev_1:1.2.3.4.dfsg-3
┌──────────────────────────────────────────────────────────────────────────────┐
│ Build │
@@ -208,14 +255,13 @@ Package versions: apt_0.8.12 base-files_6.1 base-passwd_3.5.22 bash_4.1-3 binuti
Unpack source
─────────────
-dpkg-source: warning: -sn is not a valid option for Dpkg::Source::Package::V3::quilt
gpgv: keyblock resource `/home/buildd/.gnupg/trustedkeys.gpg': file open error
-gpgv: Signature made Wed Jan 19 13:19:58 2011 UTC using RSA key ID 2295D502
+gpgv: Signature made Tue Apr 12 08:22:29 2011 UTC using RSA key ID 2295D502
gpgv: Can't check signature: public key not found
-dpkg-source: warning: failed to verify signature on ./tabix_0.2.3-1.dsc
-dpkg-source: info: extracting tabix in tabix-0.2.3
-dpkg-source: info: unpacking tabix_0.2.3.orig.tar.bz2
-dpkg-source: info: unpacking tabix_0.2.3-1.debian.tar.gz
+dpkg-source: warning: failed to verify signature on ./tabix_0.2.4-1.dsc
+dpkg-source: info: extracting tabix in tabix-0.2.4
+dpkg-source: info: unpacking tabix_0.2.4.orig.tar.bz2
+dpkg-source: info: unpacking tabix_0.2.4-1.debian.tar.gz
Check disc space
────────────────
@@ -230,41 +276,42 @@ dpkg-buildpackage: export CXXFLAGS from dpkg-buildflags (origin: vendor): -g -O2
dpkg-buildpackage: export FFLAGS from dpkg-buildflags (origin: vendor): -g -O2
dpkg-buildpackage: export LDFLAGS from dpkg-buildflags (origin: vendor):
dpkg-buildpackage: source package tabix
-dpkg-buildpackage: source version 0.2.3-1
- dpkg-source --before-build tabix-0.2.3
+dpkg-buildpackage: source version 0.2.4-1
+ dpkg-source --before-build tabix-0.2.4
dpkg-buildpackage: host architecture kfreebsd-amd64
- /usr/bin/fakeroot debian/rules clean
+ fakeroot debian/rules clean
test -x debian/rules
dh_testroot
rm -f debian/stamp-makefile-build debian/stamp-makefile-install
/usr/bin/make -C . CFLAGS="-g -O2 -g -O2" CXXFLAGS="-g -O2 -g -O2" CPPFLAGS="" LDFLAGS="" -k clean
-make[1]: Entering directory `/build/buildd-tabix_0.2.3-1-kfreebsd-amd64-F2Ymhg/tabix-0.2.3'
-make[2]: Entering directory `/build/buildd-tabix_0.2.3-1-kfreebsd-amd64-F2Ymhg/tabix-0.2.3'
+make[1]: Entering directory `/build/buildd-tabix_0.2.4-1-kfreebsd-amd64-IfQi2a/tabix-0.2.4'
+make[2]: Entering directory `/build/buildd-tabix_0.2.4-1-kfreebsd-amd64-IfQi2a/tabix-0.2.4'
rm -fr gmon.out *.o a.out *.dSYM tabix bgzip *~ *.a tabix.aux tabix.log tabix.pdf *.class libtabix.*.dylib libtabix.so*
-make[2]: Leaving directory `/build/buildd-tabix_0.2.3-1-kfreebsd-amd64-F2Ymhg/tabix-0.2.3'
-make[1]: Leaving directory `/build/buildd-tabix_0.2.3-1-kfreebsd-amd64-F2Ymhg/tabix-0.2.3'
+make[2]: Leaving directory `/build/buildd-tabix_0.2.4-1-kfreebsd-amd64-IfQi2a/tabix-0.2.4'
+make[1]: Leaving directory `/build/buildd-tabix_0.2.4-1-kfreebsd-amd64-IfQi2a/tabix-0.2.4'
dh_clean
debian/rules build
test -x debian/rules
mkdir -p "."
/usr/share/cdbs/1/rules/buildcore.mk:109: WARNING: DEB_COMPRESS_EXCLUDE is a deprecated variable
/usr/bin/make -C . CFLAGS="-g -O2 -g -O2" CXXFLAGS="-g -O2 -g -O2" CPPFLAGS="" LDFLAGS=""
-make[1]: Entering directory `/build/buildd-tabix_0.2.3-1-kfreebsd-amd64-F2Ymhg/tabix-0.2.3'
-make[2]: Entering directory `/build/buildd-tabix_0.2.3-1-kfreebsd-amd64-F2Ymhg/tabix-0.2.3'
+make[1]: Entering directory `/build/buildd-tabix_0.2.4-1-kfreebsd-amd64-IfQi2a/tabix-0.2.4'
+make[2]: Entering directory `/build/buildd-tabix_0.2.4-1-kfreebsd-amd64-IfQi2a/tabix-0.2.4'
gcc -c -g -O2 -g -O2 -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE bgzf.c -o bgzf.o
gcc -c -g -O2 -g -O2 -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE kstring.c -o kstring.o
gcc -c -g -O2 -g -O2 -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE knetfile.c -o knetfile.o
gcc -c -g -O2 -g -O2 -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE index.c -o index.o
-ar -cru libtabix.a bgzf.o kstring.o knetfile.o index.o
+gcc -c -g -O2 -g -O2 -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE bedidx.c -o bedidx.o
+ar -cru libtabix.a bgzf.o kstring.o knetfile.o index.o bedidx.o
gcc -c -g -O2 -g -O2 -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE main.c -o main.o
gcc -g -O2 -g -O2 -o tabix main.o -lm -lz -L. -ltabix
gcc -c -g -O2 -g -O2 -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE bgzip.c -o bgzip.o
gcc -g -O2 -g -O2 -o bgzip bgzip.o bgzf.o knetfile.o -lz
-make[2]: Leaving directory `/build/buildd-tabix_0.2.3-1-kfreebsd-amd64-F2Ymhg/tabix-0.2.3'
-make[1]: Leaving directory `/build/buildd-tabix_0.2.3-1-kfreebsd-amd64-F2Ymhg/tabix-0.2.3'
+make[2]: Leaving directory `/build/buildd-tabix_0.2.4-1-kfreebsd-amd64-IfQi2a/tabix-0.2.4'
+make[1]: Leaving directory `/build/buildd-tabix_0.2.4-1-kfreebsd-amd64-IfQi2a/tabix-0.2.4'
touch debian/stamp-makefile-build
DEB_MAKE_CHECK_TARGET unset, not running checks
- /usr/bin/fakeroot debian/rules binary-arch
+ fakeroot debian/rules binary-arch
test -x debian/rules
dh_testroot
dh_prep
@@ -306,58 +353,59 @@ dpkg-shlibdeps: warning: dependency on libm.so.1 could be avoided if "debian/tab
dh_gencontrol -ptabix
dh_md5sums -ptabix
dh_builddeb -ptabix
-dpkg-deb: building package `tabix' in `../tabix_0.2.3-1_kfreebsd-amd64.deb'.
- dpkg-genchanges -B -mkfreebsd-amd64 Build Daemon (fano) <buildd_kfreebsd-amd64-fano at buildd.debian.org> >../tabix_0.2.3-1_kfreebsd-amd64.changes
+dpkg-deb: building package `tabix' in `../tabix_0.2.4-1_kfreebsd-amd64.deb'.
+ dpkg-genchanges -B -mkfreebsd-amd64 Build Daemon (fasch) <buildd_kfreebsd-amd64-fasch at buildd.debian.org> >../tabix_0.2.4-1_kfreebsd-amd64.changes
dpkg-genchanges: arch-specific upload - not including arch-independent packages
dpkg-genchanges: binary-only upload - not including any source code
- dpkg-source --after-build tabix-0.2.3
+ dpkg-source --after-build tabix-0.2.4
dpkg-buildpackage: binary only upload (no source included)
────────────────────────────────────────────────────────────────────────────────
-Build finished at 20110316-1500
+Build finished at 20110412-0952
-tabix_0.2.3-1_kfreebsd-amd64.changes:
+tabix_0.2.4-1_kfreebsd-amd64.changes:
Format: 1.8
-Date: Wed, 19 Jan 2011 22:16:39 +0900
+Date: Tue, 12 Apr 2011 17:15:33 +0900
Source: tabix
Binary: tabix
Architecture: kfreebsd-amd64
-Version: 0.2.3-1
+Version: 0.2.4-1
Distribution: sid
Urgency: low
-Maintainer: kfreebsd-amd64 Build Daemon (fano) <buildd_kfreebsd-amd64-fano at buildd.debian.org>
+Maintainer: kfreebsd-amd64 Build Daemon (fasch) <buildd_kfreebsd-amd64-fasch at buildd.debian.org>
Changed-By: Charles Plessy <plessy at debian.org>
Description:
tabix - generic indexer for TAB-delimited genome position files
-Closes: 606446
Changes:
- tabix (0.2.3-1) unstable; urgency=low
+ tabix (0.2.4-1) unstable; urgency=low
.
- * Initial release (Closes: #606446)
+ * New upstream release.
+ * Incremented Standards-Version to reflect conformance with Policy 3.9.2
+ (debian/control).
Checksums-Sha1:
- bbf10f8d03d6b1124446a8b96cd62a260ca5b29b 51418 tabix_0.2.3-1_kfreebsd-amd64.deb
+ 0cce910dd31ecc7d328759a1645db92b312772a8 56982 tabix_0.2.4-1_kfreebsd-amd64.deb
Checksums-Sha256:
- 386c54a6625f79b89d32124ef12fcf09a213b4bd4fdab2cd0051fea2997113ef 51418 tabix_0.2.3-1_kfreebsd-amd64.deb
+ 8219113674d3e14cfb5e0a56004962ff004df4dde4d8768103c0cf7a704e87e1 56982 tabix_0.2.4-1_kfreebsd-amd64.deb
Files:
- 340064b531f89fabd7d77760824c5e0a 51418 science optional tabix_0.2.3-1_kfreebsd-amd64.deb
+ 4250e22d0be1c66eb14f928b4485d958 56982 science optional tabix_0.2.4-1_kfreebsd-amd64.deb
┌──────────────────────────────────────────────────────────────────────────────┐
│ Package contents │
└──────────────────────────────────────────────────────────────────────────────┘
-tabix_0.2.3-1_kfreebsd-amd64.deb
+tabix_0.2.4-1_kfreebsd-amd64.deb
────────────────────────────────
new debian package, version 2.0.
- size 51418 bytes: control archive= 962 bytes.
- 789 bytes, 16 lines control
+ size 56982 bytes: control archive= 966 bytes.
+ 796 bytes, 16 lines control
587 bytes, 9 lines md5sums
Package: tabix
- Version: 0.2.3-1
+ Version: 0.2.4-1
Architecture: kfreebsd-amd64
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
- Installed-Size: 118
- Depends: libc0.1 (>= 2.7), zlib1g (>= 1:1.1.4)
+ Installed-Size: 126
+ Depends: libc0.1 (>= 2.7), zlib1g (>= 1:1.2.3.3.dfsg)
Section: science
Priority: optional
Homepage: http://samtools.sourceforge.net/tabix.shtml
@@ -369,25 +417,25 @@ tabix_0.2.3-1_kfreebsd-amd64.deb
chromosomal coordinates. Fast data retrieval also works over network if an URI
is given as a file name.
-drwxr-xr-x root/root 0 2011-03-16 15:00 ./
-drwxr-xr-x root/root 0 2011-03-16 15:00 ./usr/
-drwxr-xr-x root/root 0 2011-03-16 15:00 ./usr/share/
-drwxr-xr-x root/root 0 2011-03-16 15:00 ./usr/share/doc/
-drwxr-xr-x root/root 0 2011-03-16 15:00 ./usr/share/doc/tabix/
--rw-r--r-- root/root 1346 2011-01-19 13:03 ./usr/share/doc/tabix/copyright
-drwxr-xr-x root/root 0 2011-03-16 15:00 ./usr/share/doc/tabix/examples/
+drwxr-xr-x root/root 0 2011-04-12 09:52 ./
+drwxr-xr-x root/root 0 2011-04-12 09:52 ./usr/
+drwxr-xr-x root/root 0 2011-04-12 09:52 ./usr/share/
+drwxr-xr-x root/root 0 2011-04-12 09:52 ./usr/share/doc/
+drwxr-xr-x root/root 0 2011-04-12 09:52 ./usr/share/doc/tabix/
+-rw-r--r-- root/root 1473 2011-04-12 07:17 ./usr/share/doc/tabix/copyright
+drwxr-xr-x root/root 0 2011-04-12 09:52 ./usr/share/doc/tabix/examples/
-rw-r--r-- root/root 3778 2010-12-08 17:34 ./usr/share/doc/tabix/examples/example.gtf.gz
--rw-r--r-- root/root 260 2010-12-08 17:34 ./usr/share/doc/tabix/examples/example.gtf.gz.tbi
--rw-r--r-- root/root 2920 2010-12-08 17:38 ./usr/share/doc/tabix/changelog.gz
--rw-r--r-- root/root 944 2010-12-08 17:38 ./usr/share/doc/tabix/NEWS.gz
--rw-r--r-- root/root 154 2011-01-19 13:16 ./usr/share/doc/tabix/changelog.Debian.gz
-drwxr-xr-x root/root 0 2011-03-16 15:00 ./usr/share/man/
-drwxr-xr-x root/root 0 2011-03-16 15:00 ./usr/share/man/man1/
--rw-r--r-- root/root 1716 2011-03-16 15:00 ./usr/share/man/man1/tabix.1.gz
-drwxr-xr-x root/root 0 2011-03-16 15:00 ./usr/bin/
--rwxr-xr-x root/root 54160 2011-03-16 15:00 ./usr/bin/tabix
--rwxr-xr-x root/root 25656 2011-03-16 15:00 ./usr/bin/bgzip
-lrwxr-xr-x root/root 0 2011-03-16 15:00 ./usr/share/man/man1/bgzip.1.gz -> tabix.1.gz
+-rw-r--r-- root/root 259 2011-04-10 19:21 ./usr/share/doc/tabix/examples/example.gtf.gz.tbi
+-rw-r--r-- root/root 3487 2011-04-10 19:21 ./usr/share/doc/tabix/changelog.gz
+-rw-r--r-- root/root 1169 2011-04-10 19:21 ./usr/share/doc/tabix/NEWS.gz
+-rw-r--r-- root/root 262 2011-04-12 08:16 ./usr/share/doc/tabix/changelog.Debian.gz
+drwxr-xr-x root/root 0 2011-04-12 09:52 ./usr/share/man/
+drwxr-xr-x root/root 0 2011-04-12 09:52 ./usr/share/man/man1/
+-rw-r--r-- root/root 1834 2011-04-12 09:52 ./usr/share/man/man1/tabix.1.gz
+drwxr-xr-x root/root 0 2011-04-12 09:52 ./usr/bin/
+-rwxr-xr-x root/root 63072 2011-04-12 09:52 ./usr/bin/tabix
+-rwxr-xr-x root/root 25928 2011-04-12 09:52 ./usr/bin/bgzip
+lrwxr-xr-x root/root 0 2011-04-12 09:52 ./usr/share/man/man1/bgzip.1.gz -> tabix.1.gz
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -396,37 +444,72 @@ lrwxr-xr-x root/root 0 2011-03-16 15:00 ./usr/share/man/man1/bgzip.1.gz
Built successfully
────────────────────────────────────────────────────────────────────────────────
-Purging /var/lib/schroot/mount/sid-ka-sbuild-1300287611-503/build/buildd-tabix_0.2.3-1-kfreebsd-amd64-F2Ymhg
-(Reading database ... 13248 files and directories currently installed.)
-Removing zlib1g-dev ...
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Post Build │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+Purging /var/lib/schroot/mount/sid-ka-sbuild-1302601849-48083/build/buildd-tabix_0.2.4-1-kfreebsd-amd64-IfQi2a
+Reading package lists...
+Building dependency tree...
+Reading state information...
+The following package was automatically installed and is no longer required:
+ libssl0.9.8
+Use 'apt-get autoremove' to remove them.
+0 upgraded, 0 newly installed, 0 to remove and 7 not upgraded.
+Reading package lists...
+Building dependency tree...
+Reading state information...
+The following packages were automatically installed and are no longer required:
+ libpipeline1 libpcre3 groff-base libssl0.9.8 man-db
+Use 'apt-get autoremove' to remove them.
+The following packages will be REMOVED:
+ cdbs* debhelper* file* gettext* gettext-base* html2text* intltool-debian*
+ libcroco3* libglib2.0-0* libmagic1* libunistring0* libxml2* po-debconf*
+ zlib1g-dev*
+0 upgraded, 0 newly installed, 14 to remove and 7 not upgraded.
+After this operation, 21.3 MB disk space will be freed.
+(Reading database ... 14694 files and directories currently installed.)
Removing cdbs ...
Removing debhelper ...
+Removing file ...
Removing po-debconf ...
-Removing man-db ...
-Purging configuration files for man-db ...
Removing intltool-debian ...
-Removing groff-base ...
-Purging configuration files for groff-base ...
Removing gettext ...
-Removing file ...
+Removing gettext-base ...
Removing html2text ...
Purging configuration files for html2text ...
-Removing gettext-base ...
-Removing libunistring0 ...
-Purging configuration files for libunistring0 ...
Removing libcroco3 ...
Purging configuration files for libcroco3 ...
+Removing libglib2.0-0 ...
+Purging configuration files for libglib2.0-0 ...
Removing libmagic1 ...
Purging configuration files for libmagic1 ...
-Removing libpipeline1 ...
-Purging configuration files for libpipeline1 ...
+Removing libunistring0 ...
+Purging configuration files for libunistring0 ...
Removing libxml2 ...
Purging configuration files for libxml2 ...
-Removing libglib2.0-0 ...
-Purging configuration files for libglib2.0-0 ...
-Removing libpcre3 ...
-Purging configuration files for libpcre3 ...
+Removing zlib1g-dev ...
+Processing triggers for man-db ...
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Summary │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+Architecture: kfreebsd-amd64
+Build-Space: 1534
+Build-Time: 15
+Distribution: sid
+Install-Time: 57
+Job: tabix_0.2.4-1
+Package: tabix
+Package-Time: 91
+Source-Version: 0.2.4-1
+Space: 1534
+Status: successful
+Version: 0.2.4-1
────────────────────────────────────────────────────────────────────────────────
-Finished at 20110316-1500
-Build needed 00:00:46, 1344k disc space
+Finished at 20110412-0952
+Build needed 00:01:31, 1534k disc space
+Signature with key '516A3A7B' requested:
diff --git a/kfreebsd-i386.log b/kfreebsd-i386.log
index 54f71af..6259470 100644
--- a/kfreebsd-i386.log
+++ b/kfreebsd-i386.log
@@ -1,4 +1,4 @@
-From buildd at finzi.debian.org Wed Mar 16 11:31:02 2011
+From buildd at finzi.debian.org Tue Apr 12 09:48:25 2011
Return-path: <buildd at finzi.debian.org>
Received: from merikanto.debian.org ([2001:858:2:2:216:35ff:fec4:a49a])
from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
@@ -6,37 +6,36 @@ Received: from merikanto.debian.org ([2001:858:2:2:216:35ff:fec4:a49a])
EMAIL=hostmaster at merikanto.debian.org (verified)
by grieg.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
(Exim 4.69) (envelope-from <buildd at finzi.debian.org>)
- id 1PzowP-0006N0-K7
- for logs at buildd.debian.org; Wed, 16 Mar 2011 11:31:02 +0000
+ id 1Q9aCu-0003Xt-VY
+ for logs at buildd.debian.org; Tue, 12 Apr 2011 09:48:25 +0000
Received: from finzi.debian.org ([206.12.19.111])
from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
CN=finzi.debian.org, EMAIL=hostmaster at finzi.debian.org (verified)
by merikanto.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
- (Exim 4.69) (envelope-from <buildd at finzi.debian.org>)
- id 1PzowL-0005px-4b; Wed, 16 Mar 2011 11:30:58 +0000
+ (Exim 4.72) (envelope-from <buildd at finzi.debian.org>)
+ id 1Q9aCn-0002zJ-Ok; Tue, 12 Apr 2011 09:48:18 +0000
Received: from buildd by finzi.debian.org with local (Exim 4.72)
(envelope-from <buildd at finzi.debian.org>)
- id 1PzowI-0004em-Iw; Wed, 16 Mar 2011 11:30:54 +0000
-Date: Wed, 16 Mar 2011 11:30:54 +0000
-Message-Id: <E1PzowI-0004em-Iw at finzi.debian.org>
+ id 1Q9aCl-000KcS-5M; Tue, 12 Apr 2011 09:48:15 +0000
+Date: Tue, 12 Apr 2011 09:48:15 +0000
+Message-Id: <E1Q9aCl-000KcS-5M at finzi.debian.org>
From: buildd on finzi <buildd at finzi.debian.org>
To: logs at buildd.debian.org,aurelien at aurel32.net,kibi at debian-ports.org
-Subject: Log for successful build of tabix_0.2.3-1 on kfreebsd-i386 (dist=sid)
+Subject: Log for successful build of tabix_0.2.4-1 on kfreebsd-i386 (dist=sid)
Content-Type: text/plain; charset=UTF-8
Content-Transfer-Encoding: 8bit
Delivered-To: logs at buildd.debian.org
-sbuild (Debian sbuild) 0.60.0 (23 Feb 2010) on finzi.debian.org
+sbuild (Debian sbuild) 0.61.0 (23 Feb 2011) on finzi.debian.org
╔══════════════════════════════════════════════════════════════════════════════╗
-║ tabix 0.2.3-1 (kfreebsd-i386) 16 Mar 2011 11:29 ║
+║ tabix 0.2.4-1 (kfreebsd-i386) 12 Apr 2011 09:47 ║
╚══════════════════════════════════════════════════════════════════════════════╝
Package: tabix
-Version: 0.2.3-1
+Version: 0.2.4-1
+Source Version: 0.2.4-1
Architecture: kfreebsd-i386
-Chroot Build Dir: /var/lib/schroot/mount/sid-ki-sbuild-1300274991-16404/build/buildd-tabix_0.2.3-1-kfreebsd-i386-hulhzq
-Start Time: 20110316-1129
Hit http://mirror-ubc.debian.org sid InRelease
Hit http://mirror-ubc.debian.org sid/main Sources/DiffIndex
Hit http://incoming.debian.org sid InRelease
@@ -51,7 +50,7 @@ Hit http://mirror-ubc.debian.org sid/main TranslationIndex
Ign http://mirror-ubc.debian.org sid/non-free TranslationIndex
Ign http://mirror-ubc.debian.org sid/contrib Translation-en
Ign http://mirror-ubc.debian.org sid/non-free Translation-en
-Get:1 http://incoming.debian.org Release.gpg [835 B]
+Hit http://incoming.debian.org Release.gpg
Hit http://incoming.debian.org sid/main Sources/DiffIndex
Hit http://incoming.debian.org sid/contrib Sources/DiffIndex
Hit http://incoming.debian.org sid/non-free Sources/DiffIndex
@@ -61,13 +60,12 @@ Hit http://incoming.debian.org sid/non-free kfreebsd-i386 Packages/DiffIndex
Ign http://incoming.debian.org sid/contrib TranslationIndex
Hit http://incoming.debian.org sid/main TranslationIndex
Ign http://incoming.debian.org sid/non-free TranslationIndex
-Get:2 http://incoming.debian.org Release [1604 B]
-Get:3 http://incoming.debian.org Sources [30.6 kB]
-Get:4 http://incoming.debian.org Packages [486 kB]
+Hit http://incoming.debian.org Release
+Hit http://incoming.debian.org Sources
+Hit http://incoming.debian.org Packages
Ign http://incoming.debian.org sid/contrib Translation-en
Ign http://incoming.debian.org sid/non-free Translation-en
Ign http://incoming.debian.org Translation-en
-Fetched 519 kB in 4s (108 kB/s)
Reading package lists...
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -88,35 +86,90 @@ Building dependency tree...
Reading state information...
NOTICE: 'tabix' packaging is maintained in the 'Git' version control system at:
git://git.debian.org/debian-med/tabix.git
-Need to get 50.4 kB of source archives.
-Get:1 http://incoming.debian.org/buildd-unstable/ tabix 0.2.3-1 (dsc) [1882 B]
-Get:2 http://incoming.debian.org/buildd-unstable/ tabix 0.2.3-1 (tar) [46.4 kB]
-Get:3 http://incoming.debian.org/buildd-unstable/ tabix 0.2.3-1 (diff) [2130 B]
-Fetched 50.4 kB in 1s (49.6 kB/s)
+Need to get 58.4 kB of source archives.
+Get:1 http://incoming.debian.org/buildd-unstable/ tabix 0.2.4-1 (dsc) [1882 B]
+Get:2 http://incoming.debian.org/buildd-unstable/ tabix 0.2.4-1 (tar) [54.2 kB]
+Get:3 http://incoming.debian.org/buildd-unstable/ tabix 0.2.4-1 (diff) [2322 B]
+Fetched 58.4 kB in 0s (81.0 kB/s)
Download complete and in download only mode
Check arch
──────────
-** Using build dependencies supplied by package:
-Build-Depends: cdbs, debhelper (>= 8), zlib1g-dev
┌──────────────────────────────────────────────────────────────────────────────┐
-│ Install build dependencies (internal resolver) │
+│ Install core build dependencies (internal resolver) │
└──────────────────────────────────────────────────────────────────────────────┘
-Checking for already installed source dependencies...
+Build-Depends: build-essential, fakeroot
+Checking for already installed dependencies...
+build-essential: already installed (11.5)
+fakeroot: already installed (1.15.1-1)
+Checking for dependency conflicts...
+Installing positive dependencies:
+Reading package lists...
+Building dependency tree...
+Reading state information...
+The following package was automatically installed and is no longer required:
+ vim-runtime
+Use 'apt-get autoremove' to remove them.
+0 upgraded, 0 newly installed, 0 to remove and 2 not upgraded.
+Removing negative dependencies:
+Reading package lists...
+Building dependency tree...
+Reading state information...
+The following package was automatically installed and is no longer required:
+ vim-runtime
+Use 'apt-get autoremove' to remove them.
+0 upgraded, 0 newly installed, 0 to remove and 2 not upgraded.
+Checking correctness of dependencies...
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Install tabix build dependencies (internal resolver) │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+Build-Depends: base-files, base-passwd, bash, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, freebsd-utils, grep, gzip, hostname, ncurses-base, ncurses-bin, perl-base, sed, login, sysvinit-utils, sysvinit, tar, bsdutils, util-linux, libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), cdbs, debhelper (>= 8), zlib1g-dev
+Checking for already installed dependencies...
+base-files: already installed (6.3)
+base-passwd: already installed (3.5.22)
+bash: already installed (4.1-3)
+coreutils: already installed (8.5-1)
+dash: already installed (0.5.5.1-7.4)
+debianutils: already installed (3.4.4)
+diffutils: already installed (1:3.0-1)
+dpkg: already installed (1.16.0.1)
+e2fsprogs: already installed (1.41.12-2)
+findutils: already installed (4.4.2-1)
+freebsd-utils: already installed (8.1-4)
+grep: already installed (2.6.3-3)
+gzip: already installed (1.3.12-9)
+hostname: already installed (3.06)
+ncurses-base: already installed (5.8+20110307-1)
+ncurses-bin: already installed (5.9-1)
+perl-base: already installed (5.10.1-19)
+sed: already installed (4.2.1-9)
+login: already installed (1:4.1.4.2+svn3283-3)
+sysvinit-utils: already installed (2.88dsf-13.1)
+sysvinit: already installed (2.88dsf-13.1)
+tar: already installed (1.25-3)
+bsdutils: already installed (1:2.17.2-9.1)
+util-linux: already installed (2.17.2-9.1)
+libc6-dev: already installed (~*=PROVIDED=*=)
+gcc: already installed (4:4.5.2-5 >= 4:4.4.3 is satisfied)
+g++: already installed (4:4.5.2-5 >= 4:4.4.3 is satisfied)
+make: already installed (3.81-8.1)
+dpkg-dev: already installed (1.16.0.1 >= 1.13.5 is satisfied)
cdbs: missing
debhelper: missing
-Using default version 8.1.2
+Using default version 8.1.3
zlib1g-dev: missing
-Checking for source dependency conflicts...
+Checking for dependency conflicts...
Installing positive dependencies: cdbs debhelper zlib1g-dev
Reading package lists...
Building dependency tree...
Reading state information...
-The following packages were automatically installed and are no longer required:
- libppl7 g++-4.4 libstdc++6-4.4-dev libppl-c2
+The following package was automatically installed and is no longer required:
+ vim-runtime
Use 'apt-get autoremove' to remove them.
The following extra packages will be installed:
file gettext gettext-base groff-base html2text intltool-debian libcroco3
@@ -133,16 +186,16 @@ The following NEW packages will be installed:
intltool-debian libcroco3 libglib2.0-0 libmagic1 libpcre3 libpipeline1
libunistring0 libxml2 man-db po-debconf zlib1g-dev
debconf: delaying package configuration, since apt-utils is not installed
-0 upgraded, 18 newly installed, 0 to remove and 7 not upgraded.
-Need to get 0 B/9950 kB of archives.
+0 upgraded, 18 newly installed, 0 to remove and 2 not upgraded.
+Need to get 0 B/9966 kB of archives.
After this operation, 26.0 MB of additional disk space will be used.
Selecting previously deselected package groff-base.
-(Reading database ... 14330 files and directories currently installed.)
-Unpacking groff-base (from .../groff-base_1.21-4_kfreebsd-i386.deb) ...
+(Reading database ... 13430 files and directories currently installed.)
+Unpacking groff-base (from .../groff-base_1.21-5_kfreebsd-i386.deb) ...
Selecting previously deselected package libpipeline1.
-Unpacking libpipeline1 (from .../libpipeline1_1.1.0-1_kfreebsd-i386.deb) ...
+Unpacking libpipeline1 (from .../libpipeline1_1.2.0-1_kfreebsd-i386.deb) ...
Selecting previously deselected package man-db.
-Unpacking man-db (from .../man-db_2.5.9-4_kfreebsd-i386.deb) ...
+Unpacking man-db (from .../man-db_2.6.0.1-1_kfreebsd-i386.deb) ...
Selecting previously deselected package libmagic1.
Unpacking libmagic1 (from .../libmagic1_5.04-5_kfreebsd-i386.deb) ...
Selecting previously deselected package file.
@@ -156,7 +209,7 @@ Unpacking libxml2 (from .../libxml2_2.7.8.dfsg-2_kfreebsd-i386.deb) ...
Selecting previously deselected package html2text.
Unpacking html2text (from .../html2text_1.3.2a-15_kfreebsd-i386.deb) ...
Selecting previously deselected package libglib2.0-0.
-Unpacking libglib2.0-0 (from .../libglib2.0-0_2.28.2-1_kfreebsd-i386.deb) ...
+Unpacking libglib2.0-0 (from .../libglib2.0-0_2.28.4-1_kfreebsd-i386.deb) ...
Selecting previously deselected package libcroco3.
Unpacking libcroco3 (from .../libcroco3_0.6.2-1_kfreebsd-i386.deb) ...
Selecting previously deselected package libunistring0.
@@ -168,14 +221,14 @@ Unpacking intltool-debian (from .../intltool-debian_0.35.0+20060710.1_all.deb) .
Selecting previously deselected package po-debconf.
Unpacking po-debconf (from .../po-debconf_1.0.16+nmu1_all.deb) ...
Selecting previously deselected package debhelper.
-Unpacking debhelper (from .../debhelper_8.1.2_all.deb) ...
+Unpacking debhelper (from .../debhelper_8.1.3_all.deb) ...
Selecting previously deselected package cdbs.
Unpacking cdbs (from .../archives/cdbs_0.4.92_all.deb) ...
Selecting previously deselected package zlib1g-dev.
Unpacking zlib1g-dev (from .../zlib1g-dev_1%3a1.2.3.4.dfsg-3_kfreebsd-i386.deb) ...
-Setting up groff-base (1.21-4) ...
-Setting up libpipeline1 (1.1.0-1) ...
-Setting up man-db (2.5.9-4) ...
+Setting up groff-base (1.21-5) ...
+Setting up libpipeline1 (1.2.0-1) ...
+Setting up man-db (2.6.0.1-1) ...
Building database of manual pages ...
Setting up libmagic1 (5.04-5) ...
Setting up file (5.04-5) ...
@@ -183,21 +236,28 @@ Setting up gettext-base (0.18.1.1-3) ...
Setting up libpcre3 (8.12-3) ...
Setting up libxml2 (2.7.8.dfsg-2) ...
Setting up html2text (1.3.2a-15) ...
-Setting up libglib2.0-0 (2.28.2-1) ...
+Setting up libglib2.0-0 (2.28.4-1) ...
No schema files found: doing nothing.
Setting up libcroco3 (0.6.2-1) ...
Setting up libunistring0 (0.9.3-3) ...
Setting up gettext (0.18.1.1-3) ...
Setting up intltool-debian (0.35.0+20060710.1) ...
Setting up po-debconf (1.0.16+nmu1) ...
-Setting up debhelper (8.1.2) ...
+Setting up debhelper (8.1.3) ...
Setting up cdbs (0.4.92) ...
Setting up zlib1g-dev (1:1.2.3.4.dfsg-3) ...
Removing negative dependencies:
-Checking correctness of source dependencies...
+Reading package lists...
+Building dependency tree...
+Reading state information...
+The following package was automatically installed and is no longer required:
+ vim-runtime
+Use 'apt-get autoremove' to remove them.
+0 upgraded, 0 newly installed, 0 to remove and 2 not upgraded.
+Checking correctness of dependencies...
Kernel: GNU/kFreeBSD 8.1-1-686 kfreebsd-i386 (i686)
-Toolchain package versions: libc6-dev_ =*=NOT INSTALLED=*= dpkg-dev_1.15.8.10 libstdc++6_4.5.2-6 gcc-4.5_4.5.2-6 g++-4.5_4.5.2-6 binutils_2.21.0.20110302-2 libstdc++6-4.5-dev_4.5.2-6 libc0.1-dev_2.11.2-13 kfreebsd-kernel-headers_0.53
-Package versions: apt_0.8.12 autotools-dev_20100122.1 base-files_6.1 base-passwd_3.5.22 bash_4.1-3 binutils_2.21.0.20110302-2 bsdmainutils_8.2.2 bsdutils_1:2.17.2-9.1 build-essential_11.5 bzip2_1.0.5-6 cdbs_0.4.92 coreutils_8.5-1 cpio_2.11-7 cpp_4:4.5.2-2 cpp-4.4_4.4.5-14 cpp-4.5_4.5.2-6 dash_0.5.5.1-7.4 debconf_1.5.38 debconf-i18n_1.5.38 debfoster_2.7-1.1 debhelper_8.1.2 debian-archive-keyring_2010.08.28 debianutils_3.4.4 diffutils_1:3.0-1 dpkg_1.15.8.10 dpkg-dev_1.15.8.10 e2fslibs_1.41.12-2 e2fsprogs_1.41.12-2 fakeroot_1.14.5-1+b1 file_5.04-5 findutils_4.4.2-1 freebsd-utils_8.1-4 g++_4:4.5.2-2 g++-4.4_4.4.5-14 g++-4.5_4.5.2-6 gcc_4:4.5.2-2 gcc-4.2-base_4.2.4-6 gcc-4.4_4.4.5-14 gcc-4.4-base_4.4.5-14 gcc-4.5_4.5.2-6 gcc-4.5-base_4.5.2-6 gettext_0.18.1.1-3 gettext-base_0.18.1.1-3 gnupg_1.4.11-3 gpgv_1.4.11-3 grep_2.6.3-3 groff-base_1.21-4 gzip_1.3.12-9 hostname_3.06 html2text_1.3.2a-15 initscripts_2.88dsf-13.1 insserv_1.14.0-2 intltool-debian_0.35.0+20060710.1 kfreebsd-kernel-headers_0.53 libacl1_2.2.49-4 libattr1_1:2.4.44-2 libblkid1_2.17.2-9.1 libbsd0_0.2.0-1 libbz2-1.0_1.0.5-6 libc-bin_2.11.2-13 libc-dev-bin_2.11.2-13 libc0.1_2.11.2-13 libc0.1-dev_2.11.2-13 libcam0_8.1-5 libcloog-ppl0_0.15.9-3 libcomerr2_1.41.12-2 libcroco3_0.6.2-1 libdb4.7_4.7.25-12 libdb4.8_4.8.30-5 libdpkg-perl_1.15.8.10 libedit2_2.11-20080614-2 libelfg0_0.8.13-1 libexpat1_2.0.1-7 libgc1c2_1:7.1-7 libgcc1_1:4.5.2-6 libgcrypt11_1.4.6-5 libgdbm3_1.8.3-9 libgeom0_8.1-5 libglib2.0-0_2.28.2-1 libgmp10_2:5.0.1+dfsg-6 libgmp3c2_2:4.3.2+dfsg-1 libgmpxx4ldbl_2:5.0.1+dfsg-6 libgnutls26_2.10.5-1 libgomp1_4.5.2-6 libgpg-error0_1.10-0.3 libkiconv4_8.1-5 libkvm0_8.1-5 libldap-2.4-2_2.4.23-7 liblocale-gettext-perl_1.05-6 liblzma2_5.0.0-2 libmagic1_5.04-5 libmpc2_0.9-2 libmpfr4_3.0.0-9 libncurses5_5.8+20110307-1 libncursesw5_5.8+20110307-1 libpam-modules_1.1.2-2 libpam-runtime_1.1.2-2 libpam0g_1.1.2-2 libpcre3_8.12-3 libpipeline1_1.1.0-1 libpng12-0_1.2.44-2 libppl-c2_0.10.2-9 libppl-c4_0.11.2-2 libppl7_0.10.2-9 libppl9_0.11.2-2 libpwl5_0.11.2-2 libreadline6_6.1-3 libsasl2-2_2.1.23.dfsg1-7 libsbuf0_8.1-5 libslang2_2.2.2-4 libss2_1.41.12-2 libstdc++6_4.5.2-6 libstdc++6-4.4-dev_4.4.5-14 libstdc++6-4.5-dev_4.5.2-6 libtasn1-3_2.9-2 libtext-charwidth-perl_0.04-6 libtext-iconv-perl_1.7-2 libtext-wrapi18n-perl_0.06-7 libtimedate-perl_1.2000-1 libunistring0_0.9.3-3 libusb-0.1-4_2:0.1.12-17 libuuid1_2.17.2-9.1 libxml2_2.7.8.dfsg-2 login_1:4.1.4.2+svn3283-3 lsb-base_3.2-27 lzma_4.43-14 make_3.81-8 man-db_2.5.9-4 mawk_1.3.3-15 ncurses-base_5.8+20110307-1 ncurses-bin_5.8+20110307-1 netbase_4.45 passwd_1:4.1.4.2+svn3283-3 patch_2.6.1-1 perl_5.10.1-17 perl-base_5.10.1-17 perl-modules_5.10.1-17 po-debconf_1.0.16+nmu1 procps_1:3.2.8-10 psmisc_22.13-1 readline-common_6.1-3 sed_4.2.1-9 sensible-utils_0.0.6 sudo_1.7.4p6-1 sysv-rc_2.88dsf-13.1 sysvinit_2.88dsf-13.1 sysvinit-utils_2.88dsf-13.1 tar_1.25-3 type-handling_0.2.23 tzdata_2011d-1 ufsutils_7.3-1+b1 util-linux_2.17.2-9.1 vim_2:7.3.035+hg~8fdc12103333-1 vim-common_2:7.3.035+hg~8fdc12103333-1 vim-runtime_2:7.3.035+hg~8fdc12103333-1 xz-utils_5.0.0-2 zlib1g_1:1.2.3.4.dfsg-3 zlib1g-dev_1:1.2.3.4.dfsg-3
+Toolchain package versions: binutils_2.21.0.20110327-3 dpkg-dev_1.16.0.1 g++-4.5_4.5.2-8 gcc-4.5_4.5.2-8 kfreebsd-kernel-headers_0.53 libc0.1-dev_2.11.2-13 libstdc++6_4.6.0-2 libstdc++6-4.5-dev_4.5.2-8
+Package versions: apt_0.8.13.2 autotools-dev_20100122.1 base-files_6.3 base-passwd_3.5.22 bash_4.1-3 binutils_2.21.0.20110327-3 bsdmainutils_8.2.2 bsdutils_1:2.17.2-9.1 build-essential_11.5 bzip2_1.0.5-6 cdbs_0.4.92 coreutils_8.5-1 cpio_2.11-7 cpp_4:4.5.2-5 cpp-4.5_4.5.2-8 dash_0.5.5.1-7.4 debconf_1.5.38 debconf-english_1.5.38 debfoster_2.7-1.1 debhelper_8.1.3 debian-archive-keyring_2010.08.28 debianutils_3.4.4 diffutils_1:3.0-1 dpkg_1.16.0.1 dpkg-dev_1.16.0.1 e2fslibs_1.41.12-2 e2fsprogs_1.41.12-2 fakeroot_1.15.1-1 file_5.04-5 findutils_4.4.2-1 freebsd-utils_8.1-4 g++_4:4.5.2-5 g++-4.5_4.5.2-8 gcc_4:4.5.2-5 gcc-4.2-base_4.2.4-6 gcc-4.4-base_4.4.5-15 gcc-4.5_4.5.2-8 gcc-4.5-base_4.5.2-8 gcc-4.6-base_4.6.0-2 gettext_0.18.1.1-3 gettext-base_0.18.1.1-3 gnupg_1.4.11-3 gpgv_1.4.11-3 grep_2.6.3-3 groff-base_1.21-5 gzip_1.3.12-9 hostname_3.06 html2text_1.3.2a-15 initscripts_2.88dsf-13.1 insserv_1.14.0-2.1 intltool-debian_0.35.0+20060710.1 kfreebsd-kernel-headers_0.53 libacl1_2.2.49-4 libattr1_1:2.4.44-2 libblkid1_2.17.2-9.1 libbsd0_0.2.0-1 libbz2-1.0_1.0.5-6 libc-bin_2.11.2-13 libc-dev-bin_2.11.2-13 libc0.1_2.11.2-13 libc0.1-dev_2.11.2-13 libcam0_8.1-5 libcloog-ppl0_0.15.9-3 libcomerr2_1.41.12-2 libcroco3_0.6.2-1 libdb4.7_4.7.25-12 libdb4.8_4.8.30-5 libdpkg-perl_1.16.0.1 libedit2_2.11-20080614-2 libelfg0_0.8.13-1 libexpat1_2.0.1-7 libgc1c2_1:7.1-7 libgcc1_1:4.6.0-2 libgcrypt11_1.4.6-5 libgdbm3_1.8.3-9 libgeom0_8.1-5 libglib2.0-0_2.28.4-1 libgmp10_2:5.0.1+dfsg-7 libgmpxx4ldbl_2:5.0.1+dfsg-7 libgnutls26_2.10.5-1+b1 libgomp1_4.6.0-2 libgpg-error0_1.10-0.3 libkiconv4_8.1-5 libkvm0_8.1-5 libldap-2.4-2_2.4.25-1 liblocale-gettext-perl_1.05-6 liblzma2_5.0.0-2 libmagic1_5.04-5 libmpc2_0.9-2 libmpfr4_3.0.0-9 libncurses5_5.9-1 libncursesw5_5.8+20110307-1 libpam-modules_1.1.2-2 libpam-runtime_1.1.2-2 libpam0g_1.1.2-2 libpcre3_8.12-3 libpipeline1_1.2.0-1 libpng12-0_1.2.44-2 libppl-c4_0.11.2-3 libppl9_0.11.2-3 libpwl5_0.11.2-3 libreadline6_6.1-3 libsasl2-2_2.1.23.dfsg1-8 libsbuf0_8.1-5 libslang2_2.2.3-3 libss2_1.41.12-2 libstdc++6_4.6.0-2 libstdc++6-4.5-dev_4.5.2-8 libtasn1-3_2.9-2 libtext-charwidth-perl_0.04-6 libtext-iconv-perl_1.7-2 libtext-wrapi18n-perl_0.06-7 libtimedate-perl_1.2000-1 libunistring0_0.9.3-3 libusb-0.1-4_2:0.1.12-17 libuuid1_2.17.2-9.1 libxml2_2.7.8.dfsg-2 login_1:4.1.4.2+svn3283-3 lsb-base_3.2-27 lzma_4.43-14 make_3.81-8.1 man-db_2.6.0.1-1 mawk_1.3.3-15 ncurses-base_5.8+20110307-1 ncurses-bin_5.9-1 netbase_4.45 passwd_1:4.1.4.2+svn3283-3 patch_2.6.1-1 perl_5.10.1-19 perl-base_5.10.1-19 perl-modules_5.10.1-19 po-debconf_1.0.16+nmu1 procps_1:3.2.8-10 psmisc_22.13-1 readline-common_6.1-3 sed_4.2.1-9 sensible-utils_0.0.6 sudo_1.7.4p6-1 sysv-rc_2.88dsf-13.1 sysvinit_2.88dsf-13.1 sysvinit-utils_2.88dsf-13.1 tar_1.25-3 type-handling_0.2.23 tzdata_2011e-1 ufsutils_7.3-1+b1 util-linux_2.17.2-9.1 vim-runtime_2:7.3.154+hg~74503f6ee649-2 xz-utils_5.0.0-2 zlib1g_1:1.2.3.4.dfsg-3 zlib1g-dev_1:1.2.3.4.dfsg-3
┌──────────────────────────────────────────────────────────────────────────────┐
│ Build │
@@ -207,14 +267,13 @@ Package versions: apt_0.8.12 autotools-dev_20100122.1 base-files_6.1 base-passwd
Unpack source
─────────────
-dpkg-source: warning: -sn is not a valid option for Dpkg::Source::Package::V3::quilt
gpgv: keyblock resource `/home/buildd/.gnupg/trustedkeys.gpg': file open error
-gpgv: Signature made Wed Jan 19 13:19:58 2011 UTC using RSA key ID 2295D502
+gpgv: Signature made Tue Apr 12 08:22:29 2011 UTC using RSA key ID 2295D502
gpgv: Can't check signature: public key not found
-dpkg-source: warning: failed to verify signature on ./tabix_0.2.3-1.dsc
-dpkg-source: info: extracting tabix in tabix-0.2.3
-dpkg-source: info: unpacking tabix_0.2.3.orig.tar.bz2
-dpkg-source: info: unpacking tabix_0.2.3-1.debian.tar.gz
+dpkg-source: warning: failed to verify signature on ./tabix_0.2.4-1.dsc
+dpkg-source: info: extracting tabix in tabix-0.2.4
+dpkg-source: info: unpacking tabix_0.2.4.orig.tar.bz2
+dpkg-source: info: unpacking tabix_0.2.4-1.debian.tar.gz
Check disc space
────────────────
@@ -229,41 +288,42 @@ dpkg-buildpackage: export CXXFLAGS from dpkg-buildflags (origin: vendor): -g -O2
dpkg-buildpackage: export FFLAGS from dpkg-buildflags (origin: vendor): -g -O2
dpkg-buildpackage: export LDFLAGS from dpkg-buildflags (origin: vendor):
dpkg-buildpackage: source package tabix
-dpkg-buildpackage: source version 0.2.3-1
- dpkg-source --before-build tabix-0.2.3
+dpkg-buildpackage: source version 0.2.4-1
+ dpkg-source --before-build tabix-0.2.4
dpkg-buildpackage: host architecture kfreebsd-i386
- /usr/bin/fakeroot debian/rules clean
+ fakeroot debian/rules clean
test -x debian/rules
dh_testroot
rm -f debian/stamp-makefile-build debian/stamp-makefile-install
/usr/bin/make -C . CFLAGS="-g -O2 -g -O2" CXXFLAGS="-g -O2 -g -O2" CPPFLAGS="" LDFLAGS="" -k clean
-make[1]: Entering directory `/build/buildd-tabix_0.2.3-1-kfreebsd-i386-hulhzq/tabix-0.2.3'
-make[2]: Entering directory `/build/buildd-tabix_0.2.3-1-kfreebsd-i386-hulhzq/tabix-0.2.3'
+make[1]: Entering directory `/build/buildd-tabix_0.2.4-1-kfreebsd-i386-mhqQSs/tabix-0.2.4'
+make[2]: Entering directory `/build/buildd-tabix_0.2.4-1-kfreebsd-i386-mhqQSs/tabix-0.2.4'
rm -fr gmon.out *.o a.out *.dSYM tabix bgzip *~ *.a tabix.aux tabix.log tabix.pdf *.class libtabix.*.dylib libtabix.so*
-make[2]: Leaving directory `/build/buildd-tabix_0.2.3-1-kfreebsd-i386-hulhzq/tabix-0.2.3'
-make[1]: Leaving directory `/build/buildd-tabix_0.2.3-1-kfreebsd-i386-hulhzq/tabix-0.2.3'
+make[2]: Leaving directory `/build/buildd-tabix_0.2.4-1-kfreebsd-i386-mhqQSs/tabix-0.2.4'
+make[1]: Leaving directory `/build/buildd-tabix_0.2.4-1-kfreebsd-i386-mhqQSs/tabix-0.2.4'
dh_clean
debian/rules build
test -x debian/rules
mkdir -p "."
/usr/share/cdbs/1/rules/buildcore.mk:109: WARNING: DEB_COMPRESS_EXCLUDE is a deprecated variable
/usr/bin/make -C . CFLAGS="-g -O2 -g -O2" CXXFLAGS="-g -O2 -g -O2" CPPFLAGS="" LDFLAGS=""
-make[1]: Entering directory `/build/buildd-tabix_0.2.3-1-kfreebsd-i386-hulhzq/tabix-0.2.3'
-make[2]: Entering directory `/build/buildd-tabix_0.2.3-1-kfreebsd-i386-hulhzq/tabix-0.2.3'
+make[1]: Entering directory `/build/buildd-tabix_0.2.4-1-kfreebsd-i386-mhqQSs/tabix-0.2.4'
+make[2]: Entering directory `/build/buildd-tabix_0.2.4-1-kfreebsd-i386-mhqQSs/tabix-0.2.4'
gcc -c -g -O2 -g -O2 -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE bgzf.c -o bgzf.o
gcc -c -g -O2 -g -O2 -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE kstring.c -o kstring.o
gcc -c -g -O2 -g -O2 -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE knetfile.c -o knetfile.o
gcc -c -g -O2 -g -O2 -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE index.c -o index.o
-ar -cru libtabix.a bgzf.o kstring.o knetfile.o index.o
+gcc -c -g -O2 -g -O2 -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE bedidx.c -o bedidx.o
+ar -cru libtabix.a bgzf.o kstring.o knetfile.o index.o bedidx.o
gcc -c -g -O2 -g -O2 -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE main.c -o main.o
gcc -g -O2 -g -O2 -o tabix main.o -lm -lz -L. -ltabix
gcc -c -g -O2 -g -O2 -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE bgzip.c -o bgzip.o
gcc -g -O2 -g -O2 -o bgzip bgzip.o bgzf.o knetfile.o -lz
-make[2]: Leaving directory `/build/buildd-tabix_0.2.3-1-kfreebsd-i386-hulhzq/tabix-0.2.3'
-make[1]: Leaving directory `/build/buildd-tabix_0.2.3-1-kfreebsd-i386-hulhzq/tabix-0.2.3'
+make[2]: Leaving directory `/build/buildd-tabix_0.2.4-1-kfreebsd-i386-mhqQSs/tabix-0.2.4'
+make[1]: Leaving directory `/build/buildd-tabix_0.2.4-1-kfreebsd-i386-mhqQSs/tabix-0.2.4'
touch debian/stamp-makefile-build
DEB_MAKE_CHECK_TARGET unset, not running checks
- /usr/bin/fakeroot debian/rules binary-arch
+ fakeroot debian/rules binary-arch
test -x debian/rules
dh_testroot
dh_prep
@@ -305,58 +365,59 @@ dpkg-shlibdeps: warning: dependency on libm.so.1 could be avoided if "debian/tab
dh_gencontrol -ptabix
dh_md5sums -ptabix
dh_builddeb -ptabix
-dpkg-deb: building package `tabix' in `../tabix_0.2.3-1_kfreebsd-i386.deb'.
- dpkg-genchanges -B -mkfreebsd-i386 Build Daemon (finzi) <buildd_kfreebsd-i386-finzi at buildd.debian.org> >../tabix_0.2.3-1_kfreebsd-i386.changes
+dpkg-deb: building package `tabix' in `../tabix_0.2.4-1_kfreebsd-i386.deb'.
+ dpkg-genchanges -B -mkfreebsd-i386 Build Daemon (finzi) <buildd_kfreebsd-i386-finzi at buildd.debian.org> >../tabix_0.2.4-1_kfreebsd-i386.changes
dpkg-genchanges: arch-specific upload - not including arch-independent packages
dpkg-genchanges: binary-only upload - not including any source code
- dpkg-source --after-build tabix-0.2.3
+ dpkg-source --after-build tabix-0.2.4
dpkg-buildpackage: binary only upload (no source included)
────────────────────────────────────────────────────────────────────────────────
-Build finished at 20110316-1130
+Build finished at 20110412-0948
-tabix_0.2.3-1_kfreebsd-i386.changes:
+tabix_0.2.4-1_kfreebsd-i386.changes:
Format: 1.8
-Date: Wed, 19 Jan 2011 22:16:39 +0900
+Date: Tue, 12 Apr 2011 17:15:33 +0900
Source: tabix
Binary: tabix
Architecture: kfreebsd-i386
-Version: 0.2.3-1
+Version: 0.2.4-1
Distribution: sid
Urgency: low
Maintainer: kfreebsd-i386 Build Daemon (finzi) <buildd_kfreebsd-i386-finzi at buildd.debian.org>
Changed-By: Charles Plessy <plessy at debian.org>
Description:
tabix - generic indexer for TAB-delimited genome position files
-Closes: 606446
Changes:
- tabix (0.2.3-1) unstable; urgency=low
+ tabix (0.2.4-1) unstable; urgency=low
.
- * Initial release (Closes: #606446)
+ * New upstream release.
+ * Incremented Standards-Version to reflect conformance with Policy 3.9.2
+ (debian/control).
Checksums-Sha1:
- 68435c1769b2515db23c3247de4d3ccdb3e975de 48966 tabix_0.2.3-1_kfreebsd-i386.deb
+ a4c17c579e5dddee3f8d00ab54739ab19bc43e86 54108 tabix_0.2.4-1_kfreebsd-i386.deb
Checksums-Sha256:
- e74a930360e9bdf3a9b17a9364bd1f88cdbaaf635acbe83f58ea303182a0cf87 48966 tabix_0.2.3-1_kfreebsd-i386.deb
+ 250845a7f0efc41505fdac694d454ca43a97913d69a74bcd9cd354744ec48263 54108 tabix_0.2.4-1_kfreebsd-i386.deb
Files:
- ed4a3f240040f2bdb2a2ab40cb44627b 48966 science optional tabix_0.2.3-1_kfreebsd-i386.deb
+ 5ba3a05ebb79859da470dc62577a637c 54108 science optional tabix_0.2.4-1_kfreebsd-i386.deb
┌──────────────────────────────────────────────────────────────────────────────┐
│ Package contents │
└──────────────────────────────────────────────────────────────────────────────┘
-tabix_0.2.3-1_kfreebsd-i386.deb
+tabix_0.2.4-1_kfreebsd-i386.deb
───────────────────────────────
new debian package, version 2.0.
- size 48966 bytes: control archive= 965 bytes.
- 788 bytes, 16 lines control
+ size 54108 bytes: control archive= 967 bytes.
+ 795 bytes, 16 lines control
587 bytes, 9 lines md5sums
Package: tabix
- Version: 0.2.3-1
+ Version: 0.2.4-1
Architecture: kfreebsd-i386
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
- Installed-Size: 110
- Depends: libc0.1 (>= 2.7), zlib1g (>= 1:1.1.4)
+ Installed-Size: 118
+ Depends: libc0.1 (>= 2.7), zlib1g (>= 1:1.2.3.3.dfsg)
Section: science
Priority: optional
Homepage: http://samtools.sourceforge.net/tabix.shtml
@@ -368,25 +429,25 @@ tabix_0.2.3-1_kfreebsd-i386.deb
chromosomal coordinates. Fast data retrieval also works over network if an URI
is given as a file name.
-drwxr-xr-x root/root 0 2011-03-16 11:30 ./
-drwxr-xr-x root/root 0 2011-03-16 11:30 ./usr/
-drwxr-xr-x root/root 0 2011-03-16 11:30 ./usr/share/
-drwxr-xr-x root/root 0 2011-03-16 11:30 ./usr/share/doc/
-drwxr-xr-x root/root 0 2011-03-16 11:30 ./usr/share/doc/tabix/
--rw-r--r-- root/root 1346 2011-01-19 13:03 ./usr/share/doc/tabix/copyright
-drwxr-xr-x root/root 0 2011-03-16 11:30 ./usr/share/doc/tabix/examples/
+drwxr-xr-x root/root 0 2011-04-12 09:47 ./
+drwxr-xr-x root/root 0 2011-04-12 09:47 ./usr/
+drwxr-xr-x root/root 0 2011-04-12 09:47 ./usr/share/
+drwxr-xr-x root/root 0 2011-04-12 09:47 ./usr/share/doc/
+drwxr-xr-x root/root 0 2011-04-12 09:47 ./usr/share/doc/tabix/
+-rw-r--r-- root/root 1473 2011-04-12 07:17 ./usr/share/doc/tabix/copyright
+drwxr-xr-x root/root 0 2011-04-12 09:47 ./usr/share/doc/tabix/examples/
-rw-r--r-- root/root 3778 2010-12-08 17:34 ./usr/share/doc/tabix/examples/example.gtf.gz
--rw-r--r-- root/root 260 2010-12-08 17:34 ./usr/share/doc/tabix/examples/example.gtf.gz.tbi
--rw-r--r-- root/root 2920 2010-12-08 17:38 ./usr/share/doc/tabix/changelog.gz
--rw-r--r-- root/root 944 2010-12-08 17:38 ./usr/share/doc/tabix/NEWS.gz
--rw-r--r-- root/root 154 2011-01-19 13:16 ./usr/share/doc/tabix/changelog.Debian.gz
-drwxr-xr-x root/root 0 2011-03-16 11:30 ./usr/share/man/
-drwxr-xr-x root/root 0 2011-03-16 11:30 ./usr/share/man/man1/
--rw-r--r-- root/root 1716 2011-03-16 11:30 ./usr/share/man/man1/tabix.1.gz
-drwxr-xr-x root/root 0 2011-03-16 11:30 ./usr/bin/
--rwxr-xr-x root/root 49204 2011-03-16 11:30 ./usr/bin/tabix
--rwxr-xr-x root/root 21612 2011-03-16 11:30 ./usr/bin/bgzip
-lrwxr-xr-x root/root 0 2011-03-16 11:30 ./usr/share/man/man1/bgzip.1.gz -> tabix.1.gz
+-rw-r--r-- root/root 259 2011-04-10 19:21 ./usr/share/doc/tabix/examples/example.gtf.gz.tbi
+-rw-r--r-- root/root 3487 2011-04-10 19:21 ./usr/share/doc/tabix/changelog.gz
+-rw-r--r-- root/root 1169 2011-04-10 19:21 ./usr/share/doc/tabix/NEWS.gz
+-rw-r--r-- root/root 262 2011-04-12 08:16 ./usr/share/doc/tabix/changelog.Debian.gz
+drwxr-xr-x root/root 0 2011-04-12 09:47 ./usr/share/man/
+drwxr-xr-x root/root 0 2011-04-12 09:47 ./usr/share/man/man1/
+-rw-r--r-- root/root 1834 2011-04-12 09:47 ./usr/share/man/man1/tabix.1.gz
+drwxr-xr-x root/root 0 2011-04-12 09:47 ./usr/bin/
+-rwxr-xr-x root/root 57524 2011-04-12 09:47 ./usr/bin/tabix
+-rwxr-xr-x root/root 22276 2011-04-12 09:47 ./usr/bin/bgzip
+lrwxr-xr-x root/root 0 2011-04-12 09:47 ./usr/share/man/man1/bgzip.1.gz -> tabix.1.gz
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -395,37 +456,79 @@ lrwxr-xr-x root/root 0 2011-03-16 11:30 ./usr/share/man/man1/bgzip.1.gz
Built successfully
────────────────────────────────────────────────────────────────────────────────
-Purging /var/lib/schroot/mount/sid-ki-sbuild-1300274991-16404/build/buildd-tabix_0.2.3-1-kfreebsd-i386-hulhzq
-(Reading database ... 15612 files and directories currently installed.)
-Removing zlib1g-dev ...
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Post Build │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+Purging /var/lib/schroot/mount/sid-ki-sbuild-1302601625-78075/build/buildd-tabix_0.2.4-1-kfreebsd-i386-mhqQSs
+Reading package lists...
+Building dependency tree...
+Reading state information...
+The following package was automatically installed and is no longer required:
+ vim-runtime
+Use 'apt-get autoremove' to remove them.
+0 upgraded, 0 newly installed, 0 to remove and 2 not upgraded.
+Reading package lists...
+Building dependency tree...
+Reading state information...
+The following package was automatically installed and is no longer required:
+ vim-runtime
+Use 'apt-get autoremove' to remove them.
+The following packages will be REMOVED:
+ cdbs* debhelper* file* gettext* gettext-base* groff-base* html2text*
+ intltool-debian* libcroco3* libglib2.0-0* libmagic1* libpcre3* libpipeline1*
+ libunistring0* libxml2* man-db* po-debconf* zlib1g-dev*
+0 upgraded, 0 newly installed, 18 to remove and 2 not upgraded.
+After this operation, 26.0 MB disk space will be freed.
+(Reading database ... 14711 files and directories currently installed.)
Removing cdbs ...
Removing debhelper ...
+Removing file ...
Removing po-debconf ...
+Removing intltool-debian ...
+Removing gettext ...
+Removing gettext-base ...
Removing man-db ...
Purging configuration files for man-db ...
-Removing intltool-debian ...
Removing groff-base ...
Purging configuration files for groff-base ...
-Removing gettext ...
-Removing file ...
Removing html2text ...
Purging configuration files for html2text ...
-Removing gettext-base ...
-Removing libunistring0 ...
-Purging configuration files for libunistring0 ...
Removing libcroco3 ...
Purging configuration files for libcroco3 ...
+Removing libglib2.0-0 ...
+Purging configuration files for libglib2.0-0 ...
Removing libmagic1 ...
Purging configuration files for libmagic1 ...
+Removing libpcre3 ...
+Purging configuration files for libpcre3 ...
Removing libpipeline1 ...
Purging configuration files for libpipeline1 ...
+Removing libunistring0 ...
+Purging configuration files for libunistring0 ...
Removing libxml2 ...
Purging configuration files for libxml2 ...
-Removing libglib2.0-0 ...
-Purging configuration files for libglib2.0-0 ...
-Removing libpcre3 ...
-Purging configuration files for libpcre3 ...
+Removing zlib1g-dev ...
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Summary │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+Architecture: kfreebsd-i386
+Build-Space: 1178
+Build-Time: 15
+Distribution: sid
+Install-Time: 31
+Job: tabix_0.2.4-1
+Package: tabix
+Package-Time: 57
+Source-Version: 0.2.4-1
+Space: 1178
+Status: successful
+Version: 0.2.4-1
────────────────────────────────────────────────────────────────────────────────
-Finished at 20110316-1130
-Build needed 00:00:54, 1008k disc space
+Finished at 20110412-0948
+Build needed 00:00:57, 1178k disc space
+Signature with key 'BB0A10AB' requested:
diff --git a/mips.log b/mips.log
index 8143208..50ff15b 100644
--- a/mips.log
+++ b/mips.log
@@ -1,70 +1,69 @@
-From buildd at ball.debian.org Sat Mar 19 02:29:27 2011
-Return-path: <buildd at ball.debian.org>
+From buildd at lucatelli.debian.org Tue Apr 12 11:23:24 2011
+Return-path: <buildd at lucatelli.debian.org>
Received: from merikanto.debian.org ([2001:858:2:2:216:35ff:fec4:a49a])
from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
CN=merikanto.debian.org,
EMAIL=hostmaster at merikanto.debian.org (verified)
by grieg.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
- (Exim 4.69) (envelope-from <buildd at ball.debian.org>)
- id 1Q0luu-0000IG-Mx
- for logs at buildd.debian.org; Sat, 19 Mar 2011 02:29:27 +0000
-Received: from ball.debian.org ([2001:41b8:202:deb:202:4cff:fefe:d09])
+ (Exim 4.69) (envelope-from <buildd at lucatelli.debian.org>)
+ id 1Q9bgp-0004ZL-QA
+ for logs at buildd.debian.org; Tue, 12 Apr 2011 11:23:24 +0000
+Received: from lucatelli.debian.org ([2607:f8f0:610:4000:2e0:98ff:fe00:4141])
from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
- CN=ball.debian.org, EMAIL=hostmaster at ball.debian.org (verified)
+ CN=lucatelli.debian.org,
+ EMAIL=hostmaster at lucatelli.debian.org (verified)
by merikanto.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
- (Exim 4.72) (envelope-from <buildd at ball.debian.org>)
- id 1Q0luq-0004FQ-LS
- for logs at buildd.debian.org; Sat, 19 Mar 2011 02:29:21 +0000
-Received: from buildd by ball.debian.org with local (Exim 4.69)
- (envelope-from <buildd at ball.debian.org>)
- id 1Q0lup-0003MX-TR; Sat, 19 Mar 2011 02:29:19 +0000
-From: buildd on ball <buildd at ball.debian.org>
-To: logs at buildd.debian.org,buildd-porters at ball.debian.org
-Subject: Log for successful build of tabix_0.2.3-1 on mips (dist=sid)
+ (Exim 4.72) (envelope-from <buildd at lucatelli.debian.org>)
+ id 1Q9bgi-0005un-MQ
+ for logs at buildd.debian.org; Tue, 12 Apr 2011 11:23:17 +0000
+Received: from buildd by lucatelli.debian.org with local (Exim 4.69)
+ (envelope-from <buildd at lucatelli.debian.org>) id 1Q9bgb-0003Ec-JQ
+ for logs at buildd.debian.org; Tue, 12 Apr 2011 11:23:09 +0000
+From: buildd on lucatelli <buildd at lucatelli.debian.org>
+To: logs at buildd.debian.org
+Subject: Log for successful build of tabix_0.2.4-1 on mips (dist=sid)
Content-Type: text/plain; charset=UTF-8
Content-Transfer-Encoding: 8bit
-Message-Id: <E1Q0lup-0003MX-TR at ball.debian.org>
-Date: Sat, 19 Mar 2011 02:29:19 +0000
+Message-Id: <E1Q9bgb-0003Ec-JQ at lucatelli.debian.org>
+Date: Tue, 12 Apr 2011 11:23:09 +0000
Delivered-To: logs at buildd.debian.org
-sbuild (Debian sbuild) 0.60.5 (14 Nov 2010) on ball.debian.org
+sbuild (Debian sbuild) 0.61.0 (23 Feb 2011) on lucatelli.debian.org
╔══════════════════════════════════════════════════════════════════════════════╗
-║ tabix 0.2.3-1 (mips) 19 Mar 2011 02:24 ║
+║ tabix 0.2.4-1 (mips) 12 Apr 2011 11:18 ║
╚══════════════════════════════════════════════════════════════════════════════╝
Package: tabix
-Version: 0.2.3-1
+Version: 0.2.4-1
+Source Version: 0.2.4-1
Architecture: mips
-Chroot Build Dir: /var/lib/schroot/mount/sid-mips-sbuild-7fc87758-5fd8-46a6-bd9f-b5608cf0d897/build/buildd-tabix_0.2.3-1-mips-fJoL2A
-Start Time: 20110319-0224
-Get:1 http://debian.netcologne.de unstable Release.gpg [835B]
-Ign http://debian.netcologne.de/debian/ unstable/contrib Translation-en
-Ign http://debian.netcologne.de/debian/ unstable/main Translation-en
-Get:2 http://debian.netcologne.de unstable Release [146kB]
-Get:3 http://incoming.debian.org unstable Release.gpg [835B]
-Ign http://incoming.debian.org/debian/ unstable/contrib Translation-en
-Ign http://incoming.debian.org/debian/ unstable/main Translation-en
-Get:4 http://incoming.debian.org Release.gpg [835B]
-Ign http://incoming.debian.org/buildd-unstable/ Translation-en
-Get:5 http://incoming.debian.org unstable Release [146kB]
-Get:6 http://debian.netcologne.de unstable/main Sources [4207kB]
-Get:7 http://incoming.debian.org Release [1604B]
-Ign http://incoming.debian.org unstable Release
-Get:8 http://incoming.debian.org unstable/main Sources [4207kB]
-Get:9 http://debian.netcologne.de unstable/contrib Sources [39.4kB]
-Get:10 http://debian.netcologne.de unstable/non-free Sources [81.4kB]
-Get:11 http://debian.netcologne.de unstable/main mips Packages [6835kB]
-Get:12 http://debian.netcologne.de unstable/contrib mips Packages [52.1kB]
-Get:13 http://incoming.debian.org unstable/contrib Sources [39.4kB]
-Get:14 http://incoming.debian.org unstable/non-free Sources [81.4kB]
-Get:15 http://incoming.debian.org unstable/main mips Packages [6835kB]
-Get:16 http://incoming.debian.org unstable/contrib mips Packages [52.1kB]
-Get:17 http://incoming.debian.org Sources [32.2kB]
-Get:18 http://incoming.debian.org Packages [473kB]
-Fetched 23.2MB in 1min 10s (331kB/s)
+Get:1 http://mirror-ubc.debian.org unstable InRelease [151 kB]
+Get:2 http://incoming.debian.org unstable InRelease [151 kB]
+Get:3 http://mirror-ubc.debian.org unstable/main Sources [5265 kB]
+Ign http://incoming.debian.org InRelease
+Get:4 http://incoming.debian.org Release.gpg [836 B]
+Get:5 http://incoming.debian.org unstable/main Sources [5265 kB]
+Get:6 http://mirror-ubc.debian.org unstable/contrib Sources [48.2 kB]
+Get:7 http://mirror-ubc.debian.org unstable/non-free Sources [97.4 kB]
+Get:8 http://mirror-ubc.debian.org unstable/main mips Packages [6928 kB]
+Get:9 http://mirror-ubc.debian.org unstable/contrib mips Packages [52.7 kB]
+Ign http://mirror-ubc.debian.org unstable/contrib TranslationIndex
+Get:10 http://mirror-ubc.debian.org unstable/main TranslationIndex [2264 B]
+Ign http://mirror-ubc.debian.org unstable/contrib Translation-en
+Get:11 http://incoming.debian.org unstable/contrib Sources [48.2 kB]
+Get:12 http://incoming.debian.org unstable/non-free Sources [97.4 kB]
+Get:13 http://incoming.debian.org unstable/main mips Packages [6928 kB]
+Get:14 http://incoming.debian.org unstable/contrib mips Packages [52.7 kB]
+Ign http://incoming.debian.org unstable/contrib TranslationIndex
+Get:15 http://incoming.debian.org unstable/main TranslationIndex [2264 B]
+Get:16 http://incoming.debian.org Release [1604 B]
+Get:17 http://incoming.debian.org Sources [50.0 kB]
+Get:18 http://incoming.debian.org Packages [773 kB]
+Ign http://incoming.debian.org unstable/contrib Translation-en
+Ign http://incoming.debian.org Translation-en
+Fetched 25.9 MB in 1min 2s (411 kB/s)
Reading package lists...
-W: GPG error: http://incoming.debian.org unstable Release: The following signatures were invalid: BADSIG AED4B06F473041FA Debian Archive Automatic Signing Key (6.0/squeeze) <ftpmaster at debian.org>
┌──────────────────────────────────────────────────────────────────────────────┐
│ Fetch source files │
@@ -81,34 +80,85 @@ Download source files with APT
Reading package lists...
Building dependency tree...
+Reading state information...
NOTICE: 'tabix' packaging is maintained in the 'Git' version control system at:
git://git.debian.org/debian-med/tabix.git
-Need to get 50.4kB of source archives.
-Get:1 http://debian.netcologne.de/debian/ unstable/main tabix 0.2.3-1 (dsc) [1882B]
-Get:2 http://debian.netcologne.de/debian/ unstable/main tabix 0.2.3-1 (tar) [46.4kB]
-Get:3 http://debian.netcologne.de/debian/ unstable/main tabix 0.2.3-1 (diff) [2130B]
-Fetched 50.4kB in 0s (320kB/s)
+Need to get 58.4 kB of source archives.
+Get:1 http://incoming.debian.org/buildd-unstable/ tabix 0.2.4-1 (dsc) [1882 B]
+Get:2 http://incoming.debian.org/buildd-unstable/ tabix 0.2.4-1 (tar) [54.2 kB]
+Get:3 http://incoming.debian.org/buildd-unstable/ tabix 0.2.4-1 (diff) [2322 B]
+Fetched 58.4 kB in 0s (93.3 kB/s)
Download complete and in download only mode
Check arch
──────────
-** Using build dependencies supplied by package:
-Build-Depends: cdbs, debhelper (>= 8), zlib1g-dev
┌──────────────────────────────────────────────────────────────────────────────┐
-│ Install build dependencies (internal resolver) │
+│ Install core build dependencies (internal resolver) │
└──────────────────────────────────────────────────────────────────────────────┘
-Checking for already installed source dependencies...
+Build-Depends: build-essential, fakeroot
+Checking for already installed dependencies...
+build-essential: already installed (11.5)
+fakeroot: already installed (1.15.1-1)
+Checking for dependency conflicts...
+Installing positive dependencies:
+Reading package lists...
+Building dependency tree...
+Reading state information...
+0 upgraded, 0 newly installed, 0 to remove and 3 not upgraded.
+Removing negative dependencies:
+Reading package lists...
+Building dependency tree...
+Reading state information...
+0 upgraded, 0 newly installed, 0 to remove and 3 not upgraded.
+Checking correctness of dependencies...
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Install tabix build dependencies (internal resolver) │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+Build-Depends: base-files, base-passwd, bash, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, ncurses-base, ncurses-bin, perl-base, sed, login, sysvinit-utils, sysvinit, tar, bsdutils, mount, util-linux, libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), cdbs, debhelper (>= 8), zlib1g-dev
+Checking for already installed dependencies...
+base-files: already installed (6.3)
+base-passwd: already installed (3.5.22)
+bash: already installed (4.1-3)
+coreutils: already installed (8.5-1)
+dash: already installed (0.5.5.1-7.4)
+debianutils: already installed (3.4.4)
+diffutils: already installed (1:3.0-1)
+dpkg: already installed (1.16.0.1)
+e2fsprogs: already installed (1.41.12-2)
+findutils: already installed (4.4.2-1+b1)
+grep: already installed (2.6.3-3)
+gzip: already installed (1.3.12-9)
+hostname: already installed (3.06)
+ncurses-base: already installed (5.8+20110307-1)
+ncurses-bin: already installed (5.8+20110307-1)
+perl-base: already installed (5.10.1-19)
+sed: already installed (4.2.1-9)
+login: already installed (1:4.1.4.2+svn3283-3)
+sysvinit-utils: already installed (2.88dsf-13.1)
+sysvinit: already installed (2.88dsf-13.1)
+tar: already installed (1.25-3)
+bsdutils: already installed (1:2.17.2-9.1)
+mount: already installed (2.17.2-9.1)
+util-linux: already installed (2.17.2-9.1)
+libc6-dev: already installed (2.11.2-11)
+gcc: already installed (4:4.4.5-7 >= 4:4.4.3 is satisfied)
+g++: already installed (4:4.4.5-7 >= 4:4.4.3 is satisfied)
+make: already installed (3.81-8.1)
+dpkg-dev: already installed (1.16.0.1 >= 1.13.5 is satisfied)
cdbs: missing
debhelper: missing
-Using default version 8.1.2
+Using default version 8.1.3
zlib1g-dev: missing
-Checking for source dependency conflicts...
+Checking for dependency conflicts...
Installing positive dependencies: cdbs debhelper zlib1g-dev
Reading package lists...
Building dependency tree...
+Reading state information...
The following extra packages will be installed:
bsdmainutils file gettext gettext-base groff-base html2text intltool-debian
libcroco3 libglib2.0-0 libmagic1 libpcre3 libpipeline1 libunistring0 libxml2
@@ -123,39 +173,39 @@ The following NEW packages will be installed:
bsdmainutils cdbs debhelper file gettext gettext-base groff-base html2text
intltool-debian libcroco3 libglib2.0-0 libmagic1 libpcre3 libpipeline1
libunistring0 libxml2 man-db po-debconf zlib1g-dev
-0 upgraded, 19 newly installed, 0 to remove and 66 not upgraded.
-Need to get 10.4MB of archives.
-After this operation, 31.1MB of additional disk space will be used.
-Get:1 http://debian.netcologne.de/debian/ unstable/main bsdmainutils mips 8.2.2 [210kB]
-Get:2 http://debian.netcologne.de/debian/ unstable/main groff-base mips 1.21-4 [1203kB]
-Get:3 http://debian.netcologne.de/debian/ unstable/main libpipeline1 mips 1.1.0-1 [35.1kB]
-Get:4 http://debian.netcologne.de/debian/ unstable/main man-db mips 2.5.9-4 [997kB]
-Get:5 http://debian.netcologne.de/debian/ unstable/main libmagic1 mips 5.04-5 [239kB]
-Get:6 http://debian.netcologne.de/debian/ unstable/main file mips 5.04-5 [49.7kB]
-Get:7 http://debian.netcologne.de/debian/ unstable/main gettext-base mips 0.18.1.1-3 [153kB]
-Get:8 http://debian.netcologne.de/debian/ unstable/main libpcre3 mips 8.12-3 [262kB]
-Get:9 http://debian.netcologne.de/debian/ unstable/main libxml2 mips 2.7.8.dfsg-2 [837kB]
-Get:10 http://debian.netcologne.de/debian/ unstable/main html2text mips 1.3.2a-15 [103kB]
-Get:11 http://debian.netcologne.de/debian/ unstable/main libglib2.0-0 mips 2.28.2-1 [1501kB]
-Get:12 http://debian.netcologne.de/debian/ unstable/main libcroco3 mips 0.6.2-1 [110kB]
-Get:13 http://debian.netcologne.de/debian/ unstable/main libunistring0 mips 0.9.3-3 [415kB]
-Get:14 http://debian.netcologne.de/debian/ unstable/main gettext mips 0.18.1.1-3 [2037kB]
-Get:15 http://debian.netcologne.de/debian/ unstable/main intltool-debian all 0.35.0+20060710.1 [30.8kB]
-Get:16 http://debian.netcologne.de/debian/ unstable/main po-debconf all 1.0.16+nmu1 [223kB]
-Get:17 http://debian.netcologne.de/debian/ unstable/main debhelper all 8.1.2 [553kB]
-Get:18 http://debian.netcologne.de/debian/ unstable/main cdbs all 0.4.92 [1268kB]
-Get:19 http://debian.netcologne.de/debian/ unstable/main zlib1g-dev mips 1:1.2.3.4.dfsg-3 [191kB]
+0 upgraded, 19 newly installed, 0 to remove and 3 not upgraded.
+Need to get 10.4 MB of archives.
+After this operation, 31.1 MB of additional disk space will be used.
+Get:1 http://mirror-ubc.debian.org/debian/ unstable/main bsdmainutils mips 8.2.2 [210 kB]
+Get:2 http://mirror-ubc.debian.org/debian/ unstable/main groff-base mips 1.21-5 [1203 kB]
+Get:3 http://mirror-ubc.debian.org/debian/ unstable/main libpipeline1 mips 1.2.0-1 [35.7 kB]
+Get:4 http://mirror-ubc.debian.org/debian/ unstable/main man-db mips 2.6.0.1-1 [996 kB]
+Get:5 http://mirror-ubc.debian.org/debian/ unstable/main libmagic1 mips 5.04-5 [239 kB]
+Get:6 http://mirror-ubc.debian.org/debian/ unstable/main file mips 5.04-5 [49.7 kB]
+Get:7 http://mirror-ubc.debian.org/debian/ unstable/main gettext-base mips 0.18.1.1-3 [153 kB]
+Get:8 http://mirror-ubc.debian.org/debian/ unstable/main libpcre3 mips 8.12-3 [262 kB]
+Get:9 http://mirror-ubc.debian.org/debian/ unstable/main libxml2 mips 2.7.8.dfsg-2 [837 kB]
+Get:10 http://mirror-ubc.debian.org/debian/ unstable/main html2text mips 1.3.2a-15 [103 kB]
+Get:11 http://mirror-ubc.debian.org/debian/ unstable/main libglib2.0-0 mips 2.28.4-1 [1505 kB]
+Get:12 http://mirror-ubc.debian.org/debian/ unstable/main libcroco3 mips 0.6.2-1 [110 kB]
+Get:13 http://mirror-ubc.debian.org/debian/ unstable/main libunistring0 mips 0.9.3-3 [415 kB]
+Get:14 http://mirror-ubc.debian.org/debian/ unstable/main gettext mips 0.18.1.1-3 [2037 kB]
+Get:15 http://mirror-ubc.debian.org/debian/ unstable/main intltool-debian all 0.35.0+20060710.1 [30.8 kB]
+Get:16 http://mirror-ubc.debian.org/debian/ unstable/main po-debconf all 1.0.16+nmu1 [223 kB]
+Get:17 http://mirror-ubc.debian.org/debian/ unstable/main debhelper all 8.1.3 [554 kB]
+Get:18 http://mirror-ubc.debian.org/debian/ unstable/main cdbs all 0.4.92 [1268 kB]
+Get:19 http://mirror-ubc.debian.org/debian/ unstable/main zlib1g-dev mips 1:1.2.3.4.dfsg-3 [191 kB]
debconf: delaying package configuration, since apt-utils is not installed
-Fetched 10.4MB in 2s (4022kB/s)
+Fetched 10.4 MB in 1s (5481 kB/s)
Selecting previously deselected package bsdmainutils.
-(Reading database ... 10123 files and directories currently installed.)
+(Reading database ... 10115 files and directories currently installed.)
Unpacking bsdmainutils (from .../bsdmainutils_8.2.2_mips.deb) ...
Selecting previously deselected package groff-base.
-Unpacking groff-base (from .../groff-base_1.21-4_mips.deb) ...
+Unpacking groff-base (from .../groff-base_1.21-5_mips.deb) ...
Selecting previously deselected package libpipeline1.
-Unpacking libpipeline1 (from .../libpipeline1_1.1.0-1_mips.deb) ...
+Unpacking libpipeline1 (from .../libpipeline1_1.2.0-1_mips.deb) ...
Selecting previously deselected package man-db.
-Unpacking man-db (from .../man-db_2.5.9-4_mips.deb) ...
+Unpacking man-db (from .../man-db_2.6.0.1-1_mips.deb) ...
Selecting previously deselected package libmagic1.
Unpacking libmagic1 (from .../libmagic1_5.04-5_mips.deb) ...
Selecting previously deselected package file.
@@ -169,7 +219,7 @@ Unpacking libxml2 (from .../libxml2_2.7.8.dfsg-2_mips.deb) ...
Selecting previously deselected package html2text.
Unpacking html2text (from .../html2text_1.3.2a-15_mips.deb) ...
Selecting previously deselected package libglib2.0-0.
-Unpacking libglib2.0-0 (from .../libglib2.0-0_2.28.2-1_mips.deb) ...
+Unpacking libglib2.0-0 (from .../libglib2.0-0_2.28.4-1_mips.deb) ...
Selecting previously deselected package libcroco3.
Unpacking libcroco3 (from .../libcroco3_0.6.2-1_mips.deb) ...
Selecting previously deselected package libunistring0.
@@ -181,7 +231,7 @@ Unpacking intltool-debian (from .../intltool-debian_0.35.0+20060710.1_all.deb) .
Selecting previously deselected package po-debconf.
Unpacking po-debconf (from .../po-debconf_1.0.16+nmu1_all.deb) ...
Selecting previously deselected package debhelper.
-Unpacking debhelper (from .../debhelper_8.1.2_all.deb) ...
+Unpacking debhelper (from .../debhelper_8.1.3_all.deb) ...
Selecting previously deselected package cdbs.
Unpacking cdbs (from .../archives/cdbs_0.4.92_all.deb) ...
Selecting previously deselected package zlib1g-dev.
@@ -189,9 +239,9 @@ Unpacking zlib1g-dev (from .../zlib1g-dev_1%3a1.2.3.4.dfsg-3_mips.deb) ...
Setting up bsdmainutils (8.2.2) ...
update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode.
update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode.
-Setting up groff-base (1.21-4) ...
-Setting up libpipeline1 (1.1.0-1) ...
-Setting up man-db (2.5.9-4) ...
+Setting up groff-base (1.21-5) ...
+Setting up libpipeline1 (1.2.0-1) ...
+Setting up man-db (2.6.0.1-1) ...
Building database of manual pages ...
Setting up libmagic1 (5.04-5) ...
Setting up file (5.04-5) ...
@@ -199,21 +249,25 @@ Setting up gettext-base (0.18.1.1-3) ...
Setting up libpcre3 (8.12-3) ...
Setting up libxml2 (2.7.8.dfsg-2) ...
Setting up html2text (1.3.2a-15) ...
-Setting up libglib2.0-0 (2.28.2-1) ...
+Setting up libglib2.0-0 (2.28.4-1) ...
No schema files found: doing nothing.
Setting up libcroco3 (0.6.2-1) ...
Setting up libunistring0 (0.9.3-3) ...
Setting up gettext (0.18.1.1-3) ...
Setting up intltool-debian (0.35.0+20060710.1) ...
Setting up po-debconf (1.0.16+nmu1) ...
-Setting up debhelper (8.1.2) ...
+Setting up debhelper (8.1.3) ...
Setting up cdbs (0.4.92) ...
Setting up zlib1g-dev (1:1.2.3.4.dfsg-3) ...
Removing negative dependencies:
-Checking correctness of source dependencies...
-Kernel: Linux 2.6.32.2-dsa-mips-swarm mips (mips64)
-Toolchain package versions: libc6-dev_2.11.2-6 dpkg-dev_1.15.8.5 linux-libc-dev_2.6.32-23 gcc-4.4_4.4.4-15 g++-4.4_4.4.4-15 binutils_2.20.1-15 libstdc++6-4.4-dev_4.4.4-15 libstdc++6_4.4.4-15
-Package versions: apt_0.8.5 base-files_5.9 base-passwd_3.5.22 bash_4.1-3 binutils_2.20.1-15 bsdmainutils_8.2.2 bsdutils_1:2.17.2-3.2 build-essential_11.5 bzip2_1.0.5-6 cdbs_0.4.92 coreutils_8.5-1 cpp_4:4.4.4-2 cpp-4.4_4.4.4-15 dash_0.5.5.1-7 debconf_1.5.35 debconf-i18n_1.5.35 debfoster_2.7-1.1 debhelper_8.1.2 debian-archive-keyring_2010.08.28 debianutils_3.4.1 diffutils_1:3.0-1 dpkg_1.15.8.5 dpkg-dev_1.15.8.5 e2fslibs_1.41.12-2 e2fsprogs_1.41.12-2 fakeroot_1.14.4-1 file_5.04-5 findutils_4.4.2-1 g++_4:4.4.4-2 g++-4.4_4.4.4-15 gcc_4:4.4.4-2 gcc-4.4_4.4.4-15 gcc-4.4-base_4.4.4-15 gettext_0.18.1.1-3 gettext-base_0.18.1.1-3 gnupg_1.4.10-4 gpgv_1.4.10-4 grep_2.6.3-3 groff-base_1.21-4 gzip_1.3.12-9 hostname_3.04 html2text_1.3.2a-15 initscripts_2.88dsf-12 insserv_1.14.0-2 intltool-debian_0.35.0+20060710.1 libacl1_2.2.49-4 libattr1_1:2.4.44-2 libblkid1_2.17.2-3.2 libbz2-1.0_1.0.5-6 libc-bin_2.11.2-6 libc-dev-bin_2.11.2-6 libc6_2.11.2-6 libc6-dev_2.11.2-6 libcomerr2_1.41.12-2 libcroco3_0.6.2-1 libdb4.7_4.7.25-9 libdb4.8_4.8.30-2 libdpkg-perl_1.15.8.5 libgc1c2_1:6.8-1.2 libgcc1_1:4.4.4-15 libgdbm3_1.8.3-9 libglib2.0-0_2.28.2-1 libgmp3c2_2:4.3.2+dfsg-1 libgomp1_4.4.4-15 liblocale-gettext-perl_1.05-6 liblzma2_4.999.9beta+20100810-1 libmagic1_5.04-5 libmpfr4_3.0.0-2 libncurses5_5.7+20100313-3 libpam-modules_1.1.1-6 libpam-runtime_1.1.1-6 libpam0g_1.1.1-6 libpcre3_8.12-3 libpipeline1_1.1.0-1 libreadline6_6.1-3 libselinux1_2.0.96-1 libsepol1_2.0.41-1 libslang2_2.2.2-4 libss2_1.41.12-2 libstdc++6_4.4.4-15 libstdc++6-4.4-dev_4.4.4-15 libtext-charwidth-perl_0.04-6 libtext-iconv-perl_1.7-2 libtext-wrapi18n-perl_0.06-7 libtimedate-perl_1.2000-1 libunistring0_0.9.3-3 libusb-0.1-4_2:0.1.12-16 libuuid1_2.17.2-3.2 libxml2_2.7.8.dfsg-2 linux-libc-dev_2.6.32-23 login_1:4.1.4.2+svn3283-1 lsb-base_3.2-24 make_3.81-8 man-db_2.5.9-4 mawk_1.3.3-15 mount_2.17.2-3.2 ncurses-base_5.7+20100313-3 ncurses-bin_5.7+20100313-3 passwd_1:4.1.4.2+svn3283-1 patch_2.6-3 perl_5.10.1-14 perl-base_5.10.1-14 perl-modules_5.10.1-14 po-debconf_1.0.16+nmu1 readline-common_6.1-3 sed_4.2.1-7 sensible-utils_0.0.4 sudo_1.7.4p4-2 sysv-rc_2.88dsf-12 sysvinit_2.88dsf-12 sysvinit-utils_2.88dsf-12 tar_1.23-3 tzdata_2010l-1 util-linux_2.17.2-3.2 xz-utils_4.999.9beta+20100810-1 zlib1g_1:1.2.3.4.dfsg-3 zlib1g-dev_1:1.2.3.4.dfsg-3
+Reading package lists...
+Building dependency tree...
+Reading state information...
+0 upgraded, 0 newly installed, 0 to remove and 3 not upgraded.
+Checking correctness of dependencies...
+Kernel: Linux 2.6.35.4-dsa-octeon mips (mips64)
+Toolchain package versions: binutils_2.21.0.20110327-3 dpkg-dev_1.16.0.1 g++-4.4_4.4.5-15 gcc-4.4_4.4.5-15 libc6-dev_2.11.2-11 libstdc++6_4.6.0-2 libstdc++6-4.4-dev_4.4.5-15 linux-libc-dev_2.6.38-3
+Package versions: apt_0.8.13.2 base-files_6.3 base-passwd_3.5.22 bash_4.1-3 binutils_2.21.0.20110327-3 bsdmainutils_8.2.2 bsdutils_1:2.17.2-9.1 build-essential_11.5 bzip2_1.0.5-6 cdbs_0.4.92 coreutils_8.5-1 cpp_4:4.4.5-7 cpp-4.4_4.4.5-15 dash_0.5.5.1-7.4 debconf_1.5.38 debconf-english_1.5.38 debfoster_2.7-1.1 debhelper_8.1.3 debian-archive-keyring_2010.08.28 debianutils_3.4.4 diffutils_1:3.0-1 dpkg_1.16.0.1 dpkg-dev_1.16.0.1 e2fslibs_1.41.12-2 e2fsprogs_1.41.12-2 fakeroot_1.15.1-1 file_5.04-5 findutils_4.4.2-1+b1 g++_4:4.4.5-7 g++-4.4_4.4.5-15 gcc_4:4.4.5-7 gcc-4.4_4.4.5-15 gcc-4.4-base_4.4.5-15 gcc-4.5-base_4.5.2-8 gcc-4.6-base_4.6.0-2 gettext_0.18.1.1-3 gettext-base_0.18.1.1-3 gnupg_1.4.11-3 gpgv_1.4.11-3 grep_2.6.3-3 groff-base_1.21-5 gzip_1.3.12-9 hostname_3.06 html2text_1.3.2a-15 initscripts_2.88dsf-13.1 insserv_1.14.0-2.1 intltool-debian_0.35.0+20060710.1 libacl1_2.2.49-4 libattr1_1:2.4.44-2 libblkid1_2.17.2-9.1 libbz2-1.0_1.0.5-6 libc-bin_2.11.2-11 libc-dev-bin_2.11.2-11 libc6_2.11.2-11 libc6-dev_2.11.2-11 libcomerr2_1.41.12-2 libcroco3_0.6.2-1 libdb4.7_4.7.25-12 libdb4.8_4.8.30-5 libdpkg-perl_1.16.0.1 libgc1c2_1:7.1-7 libgcc1_1:4.6.0-2 libgdbm3_1.8.3-9 libglib2.0-0_2.28.4-1 libgmp10_2:5.0.1+dfsg-7 libgomp1_4.6.0-2 liblocale-gettext-perl_1.05-6 liblzma2_5.0.0-2 libmagic1_5.04-5 libmpfr4_3.0.0-9 libncurses5_5.8+20110307-1 libpam-modules_1.1.2-2 libpam-runtime_1.1.2-2 libpam0g_1.1.2-2 libpcre3_8.12-3 libpipeline1_1.2.0-1 libreadline6_6.1-3 libselinux1_2.0.98-1 libsepol1_2.0.42-1 libslang2_2.2.3-3 libss2_1.41.12-2 libstdc++6_4.6.0-2 libstdc++6-4.4-dev_4.4.5-15 libtext-charwidth-perl_0.04-6 libtext-iconv-perl_1.7-2 libtext-wrapi18n-perl_0.06-7 libtimedate-perl_1.2000-1 libunistring0_0.9.3-3 libusb-0.1-4_2:0.1.12-17 libuuid1_2.17.2-9.1 libxml2_2.7.8.dfsg-2 linux-libc-dev_2.6.38-3 login_1:4.1.4.2+svn3283-3 lsb-base_3.2-27 make_3.81-8.1 man-db_2.6.0.1-1 mawk_1.3.3-15 mount_2.17.2-9.1 ncurses-base_5.8+20110307-1 ncurses-bin_5.8+20110307-1 passwd_1:4.1.4.2+svn3283-3 patch_2.6.1-1 perl_5.10.1-19 perl-base_5.10.1-19 perl-modules_5.10.1-19 po-debconf_1.0.16+nmu1 readline-common_6.1-3 sed_4.2.1-9 sensible-utils_0.0.6 sudo_1.7.4p6-1 sysv-rc_2.88dsf-13.1 sysvinit_2.88dsf-13.1 sysvinit-utils_2.88dsf-13.1 tar_1.25-3 tzdata_2011e-1 util-linux_2.17.2-9.1 xz-utils_5.0.0-2 zlib1g_1:1.2.3.4.dfsg-3 zlib1g-dev_1:1.2.3.4.dfsg-3
┌──────────────────────────────────────────────────────────────────────────────┐
│ Build │
@@ -223,14 +277,14 @@ Package versions: apt_0.8.5 base-files_5.9 base-passwd_3.5.22 bash_4.1-3 binutil
Unpack source
─────────────
-dpkg-source: warning: -sn is not a valid option for Dpkg::Source::Package::V3::quilt
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/Source/Package.pm line 258.
gpgv: keyblock resource `/home/buildd/.gnupg/trustedkeys.gpg': file open error
-gpgv: Signature made Wed Jan 19 13:19:58 2011 UTC using RSA key ID 2295D502
+gpgv: Signature made Tue Apr 12 08:22:29 2011 UTC using RSA key ID 2295D502
gpgv: Can't check signature: public key not found
-dpkg-source: warning: failed to verify signature on ./tabix_0.2.3-1.dsc
-dpkg-source: info: extracting tabix in tabix-0.2.3
-dpkg-source: info: unpacking tabix_0.2.3.orig.tar.bz2
-dpkg-source: info: unpacking tabix_0.2.3-1.debian.tar.gz
+dpkg-source: warning: failed to verify signature on ./tabix_0.2.4-1.dsc
+dpkg-source: info: extracting tabix in tabix-0.2.4
+dpkg-source: info: unpacking tabix_0.2.4.orig.tar.bz2
+dpkg-source: info: unpacking tabix_0.2.4-1.debian.tar.gz
Check disc space
────────────────
@@ -239,47 +293,61 @@ Check disc space
dpkg-buildpackage
─────────────────
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
dpkg-buildpackage: export CFLAGS from dpkg-buildflags (origin: vendor): -g -O2
dpkg-buildpackage: export CPPFLAGS from dpkg-buildflags (origin: vendor):
dpkg-buildpackage: export CXXFLAGS from dpkg-buildflags (origin: vendor): -g -O2
dpkg-buildpackage: export FFLAGS from dpkg-buildflags (origin: vendor): -g -O2
dpkg-buildpackage: export LDFLAGS from dpkg-buildflags (origin: vendor):
dpkg-buildpackage: source package tabix
-dpkg-buildpackage: source version 0.2.3-1
- dpkg-source --before-build tabix-0.2.3
+dpkg-buildpackage: source version 0.2.4-1
+ dpkg-source --before-build tabix-0.2.4
dpkg-buildpackage: host architecture mips
- /usr/bin/fakeroot debian/rules clean
+ fakeroot debian/rules clean
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
test -x debian/rules
dh_testroot
rm -f debian/stamp-makefile-build debian/stamp-makefile-install
/usr/bin/make -C . CFLAGS="-g -O2 -g -O2" CXXFLAGS="-g -O2 -g -O2" CPPFLAGS="" LDFLAGS="" -k clean
-make[1]: Entering directory `/build/buildd-tabix_0.2.3-1-mips-fJoL2A/tabix-0.2.3'
-make[2]: Entering directory `/build/buildd-tabix_0.2.3-1-mips-fJoL2A/tabix-0.2.3'
+make[1]: Entering directory `/build/buildd-tabix_0.2.4-1-mips-BI6hFB/tabix-0.2.4'
+make[2]: Entering directory `/build/buildd-tabix_0.2.4-1-mips-BI6hFB/tabix-0.2.4'
rm -fr gmon.out *.o a.out *.dSYM tabix bgzip *~ *.a tabix.aux tabix.log tabix.pdf *.class libtabix.*.dylib libtabix.so*
-make[2]: Leaving directory `/build/buildd-tabix_0.2.3-1-mips-fJoL2A/tabix-0.2.3'
-make[1]: Leaving directory `/build/buildd-tabix_0.2.3-1-mips-fJoL2A/tabix-0.2.3'
+make[2]: Leaving directory `/build/buildd-tabix_0.2.4-1-mips-BI6hFB/tabix-0.2.4'
+make[1]: Leaving directory `/build/buildd-tabix_0.2.4-1-mips-BI6hFB/tabix-0.2.4'
dh_clean
debian/rules build
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
test -x debian/rules
mkdir -p "."
/usr/share/cdbs/1/rules/buildcore.mk:109: WARNING: DEB_COMPRESS_EXCLUDE is a deprecated variable
/usr/bin/make -C . CFLAGS="-g -O2 -g -O2" CXXFLAGS="-g -O2 -g -O2" CPPFLAGS="" LDFLAGS=""
-make[1]: Entering directory `/build/buildd-tabix_0.2.3-1-mips-fJoL2A/tabix-0.2.3'
-make[2]: Entering directory `/build/buildd-tabix_0.2.3-1-mips-fJoL2A/tabix-0.2.3'
+make[1]: Entering directory `/build/buildd-tabix_0.2.4-1-mips-BI6hFB/tabix-0.2.4'
+make[2]: Entering directory `/build/buildd-tabix_0.2.4-1-mips-BI6hFB/tabix-0.2.4'
gcc -c -g -O2 -g -O2 -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE bgzf.c -o bgzf.o
gcc -c -g -O2 -g -O2 -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE kstring.c -o kstring.o
gcc -c -g -O2 -g -O2 -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE knetfile.c -o knetfile.o
gcc -c -g -O2 -g -O2 -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE index.c -o index.o
-ar -cru libtabix.a bgzf.o kstring.o knetfile.o index.o
+gcc -c -g -O2 -g -O2 -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE bedidx.c -o bedidx.o
+ar -cru libtabix.a bgzf.o kstring.o knetfile.o index.o bedidx.o
gcc -c -g -O2 -g -O2 -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE main.c -o main.o
gcc -g -O2 -g -O2 -o tabix main.o -lm -lz -L. -ltabix
gcc -c -g -O2 -g -O2 -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE bgzip.c -o bgzip.o
gcc -g -O2 -g -O2 -o bgzip bgzip.o bgzf.o knetfile.o -lz
-make[2]: Leaving directory `/build/buildd-tabix_0.2.3-1-mips-fJoL2A/tabix-0.2.3'
-make[1]: Leaving directory `/build/buildd-tabix_0.2.3-1-mips-fJoL2A/tabix-0.2.3'
+make[2]: Leaving directory `/build/buildd-tabix_0.2.4-1-mips-BI6hFB/tabix-0.2.4'
+make[1]: Leaving directory `/build/buildd-tabix_0.2.4-1-mips-BI6hFB/tabix-0.2.4'
touch debian/stamp-makefile-build
DEB_MAKE_CHECK_TARGET unset, not running checks
- /usr/bin/fakeroot debian/rules binary-arch
+ fakeroot debian/rules binary-arch
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
test -x debian/rules
dh_testroot
dh_prep
@@ -321,58 +389,59 @@ dpkg-shlibdeps: warning: dependency on libm.so.6 could be avoided if "debian/tab
dh_gencontrol -ptabix
dh_md5sums -ptabix
dh_builddeb -ptabix
-dpkg-deb: building package `tabix' in `../tabix_0.2.3-1_mips.deb'.
- dpkg-genchanges -B -mDebian Build Daemon <buildd_mips-ball at buildd.debian.org> >../tabix_0.2.3-1_mips.changes
+dpkg-deb: building package `tabix' in `../tabix_0.2.4-1_mips.deb'.
+ dpkg-genchanges -B -mmips Build Daemon (lucatelli) <buildd_mips-lucatelli at buildd.debian.org> >../tabix_0.2.4-1_mips.changes
dpkg-genchanges: arch-specific upload - not including arch-independent packages
dpkg-genchanges: binary-only upload - not including any source code
- dpkg-source --after-build tabix-0.2.3
+ dpkg-source --after-build tabix-0.2.4
dpkg-buildpackage: binary only upload (no source included)
────────────────────────────────────────────────────────────────────────────────
-Build finished at 20110319-0229
+Build finished at 20110412-1123
-tabix_0.2.3-1_mips.changes:
+tabix_0.2.4-1_mips.changes:
Format: 1.8
-Date: Wed, 19 Jan 2011 22:16:39 +0900
+Date: Tue, 12 Apr 2011 17:15:33 +0900
Source: tabix
Binary: tabix
Architecture: mips
-Version: 0.2.3-1
+Version: 0.2.4-1
Distribution: sid
Urgency: low
-Maintainer: Debian Build Daemon <buildd_mips-ball at buildd.debian.org>
+Maintainer: mips Build Daemon (lucatelli) <buildd_mips-lucatelli at buildd.debian.org>
Changed-By: Charles Plessy <plessy at debian.org>
Description:
tabix - generic indexer for TAB-delimited genome position files
-Closes: 606446
Changes:
- tabix (0.2.3-1) unstable; urgency=low
+ tabix (0.2.4-1) unstable; urgency=low
.
- * Initial release (Closes: #606446)
+ * New upstream release.
+ * Incremented Standards-Version to reflect conformance with Policy 3.9.2
+ (debian/control).
Checksums-Sha1:
- 787a16206ff43ee5b5132ebcceffeb3c2083c433 50144 tabix_0.2.3-1_mips.deb
+ 75ce721600be4e19c29594cc98b9403739032e12 60168 tabix_0.2.4-1_mips.deb
Checksums-Sha256:
- 4f441ca818d9cf66589e599711f3e888176b8733939a4eb8e54b9d91fff2f134 50144 tabix_0.2.3-1_mips.deb
+ bbc574b20e2fd2851a1f5da14296965ca2ac842a8793b15eff469ff11c63f430 60168 tabix_0.2.4-1_mips.deb
Files:
- aa75a72c0d43d1c36401607203938785 50144 science optional tabix_0.2.3-1_mips.deb
+ 62db6b59400a39b4edc835c4c23ae306 60168 science optional tabix_0.2.4-1_mips.deb
┌──────────────────────────────────────────────────────────────────────────────┐
│ Package contents │
└──────────────────────────────────────────────────────────────────────────────┘
-tabix_0.2.3-1_mips.deb
+tabix_0.2.4-1_mips.deb
──────────────────────
new debian package, version 2.0.
- size 50144 bytes: control archive= 959 bytes.
- 777 bytes, 16 lines control
+ size 60168 bytes: control archive= 958 bytes.
+ 784 bytes, 16 lines control
587 bytes, 9 lines md5sums
Package: tabix
- Version: 0.2.3-1
+ Version: 0.2.4-1
Architecture: mips
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
- Installed-Size: 168
- Depends: libc6 (>= 2.7), zlib1g (>= 1:1.1.4)
+ Installed-Size: 184
+ Depends: libc6 (>= 2.7), zlib1g (>= 1:1.2.3.3.dfsg)
Section: science
Priority: optional
Homepage: http://samtools.sourceforge.net/tabix.shtml
@@ -384,25 +453,25 @@ tabix_0.2.3-1_mips.deb
chromosomal coordinates. Fast data retrieval also works over network if an URI
is given as a file name.
-drwxr-xr-x root/root 0 2011-03-19 02:28 ./
-drwxr-xr-x root/root 0 2011-03-19 02:28 ./usr/
-drwxr-xr-x root/root 0 2011-03-19 02:28 ./usr/share/
-drwxr-xr-x root/root 0 2011-03-19 02:28 ./usr/share/doc/
-drwxr-xr-x root/root 0 2011-03-19 02:28 ./usr/share/doc/tabix/
--rw-r--r-- root/root 1346 2011-01-19 13:03 ./usr/share/doc/tabix/copyright
--rw-r--r-- root/root 2920 2010-12-08 17:38 ./usr/share/doc/tabix/changelog.gz
--rw-r--r-- root/root 944 2010-12-08 17:38 ./usr/share/doc/tabix/NEWS.gz
--rw-r--r-- root/root 154 2011-01-19 13:16 ./usr/share/doc/tabix/changelog.Debian.gz
-drwxr-xr-x root/root 0 2011-03-19 02:28 ./usr/share/doc/tabix/examples/
--rw-r--r-- root/root 260 2010-12-08 17:34 ./usr/share/doc/tabix/examples/example.gtf.gz.tbi
+drwxr-xr-x root/root 0 2011-04-12 11:22 ./
+drwxr-xr-x root/root 0 2011-04-12 11:22 ./usr/
+drwxr-xr-x root/root 0 2011-04-12 11:22 ./usr/bin/
+-rwxr-xr-x root/root 28876 2011-04-12 11:22 ./usr/bin/bgzip
+-rwxr-xr-x root/root 78552 2011-04-12 11:22 ./usr/bin/tabix
+drwxr-xr-x root/root 0 2011-04-12 11:22 ./usr/share/
+drwxr-xr-x root/root 0 2011-04-12 11:22 ./usr/share/doc/
+drwxr-xr-x root/root 0 2011-04-12 11:22 ./usr/share/doc/tabix/
+drwxr-xr-x root/root 0 2011-04-12 11:22 ./usr/share/doc/tabix/examples/
-rw-r--r-- root/root 3778 2010-12-08 17:34 ./usr/share/doc/tabix/examples/example.gtf.gz
-drwxr-xr-x root/root 0 2011-03-19 02:28 ./usr/share/man/
-drwxr-xr-x root/root 0 2011-03-19 02:28 ./usr/share/man/man1/
--rw-r--r-- root/root 1716 2011-03-19 02:28 ./usr/share/man/man1/tabix.1.gz
-drwxr-xr-x root/root 0 2011-03-19 02:28 ./usr/bin/
--rwxr-xr-x root/root 28524 2011-03-19 02:28 ./usr/bin/bgzip
--rwxr-xr-x root/root 67976 2011-03-19 02:28 ./usr/bin/tabix
-lrwxrwxrwx root/root 0 2011-03-19 02:28 ./usr/share/man/man1/bgzip.1.gz -> tabix.1.gz
+-rw-r--r-- root/root 259 2011-04-10 19:21 ./usr/share/doc/tabix/examples/example.gtf.gz.tbi
+-rw-r--r-- root/root 262 2011-04-12 08:16 ./usr/share/doc/tabix/changelog.Debian.gz
+-rw-r--r-- root/root 3487 2011-04-10 19:21 ./usr/share/doc/tabix/changelog.gz
+-rw-r--r-- root/root 1473 2011-04-12 07:17 ./usr/share/doc/tabix/copyright
+-rw-r--r-- root/root 1169 2011-04-10 19:21 ./usr/share/doc/tabix/NEWS.gz
+drwxr-xr-x root/root 0 2011-04-12 11:22 ./usr/share/man/
+drwxr-xr-x root/root 0 2011-04-12 11:22 ./usr/share/man/man1/
+-rw-r--r-- root/root 1834 2011-04-12 11:22 ./usr/share/man/man1/tabix.1.gz
+lrwxrwxrwx root/root 0 2011-04-12 11:22 ./usr/share/man/man1/bgzip.1.gz -> tabix.1.gz
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -411,74 +480,89 @@ lrwxrwxrwx root/root 0 2011-03-19 02:28 ./usr/share/man/man1/bgzip.1.gz
Built successfully
────────────────────────────────────────────────────────────────────────────────
-Purging /var/lib/schroot/mount/sid-mips-sbuild-7fc87758-5fd8-46a6-bd9f-b5608cf0d897/build/buildd-tabix_0.2.3-1-mips-fJoL2A
-Not removing build depends: cloned chroot in use
-────────────────────────────────────────────────────────────────────────────────
-Finished at 20110319-0229
-Build needed 00:04:19, 1236k disc space
-From buildd at mayer.debian.org Thu Mar 17 11:30:50 2011
-Return-path: <buildd at mayer.debian.org>
-Received: from merikanto.debian.org ([2001:858:2:2:216:35ff:fec4:a49a])
- from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
- CN=merikanto.debian.org,
- EMAIL=hostmaster at merikanto.debian.org (verified)
- by grieg.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
- (Exim 4.69) (envelope-from <buildd at mayer.debian.org>)
- id 1Q0BPl-0003Rr-Og
- for logs at buildd.debian.org; Thu, 17 Mar 2011 11:30:50 +0000
-Received: from mayer.debian.org ([140.211.166.78])
- from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
- CN=mayer.debian.org, EMAIL=hostmaster at mayer.debian.org (verified)
- by merikanto.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
- (Exim 4.69) (envelope-from <buildd at mayer.debian.org>)
- id 1Q0BPh-0001Fw-AN
- for logs at buildd.debian.org; Thu, 17 Mar 2011 11:30:45 +0000
-Received: from buildd by mayer.debian.org with local (Exim 4.69)
- (envelope-from <buildd at mayer.debian.org>)
- id 1Q0BPf-0003AK-1b; Thu, 17 Mar 2011 11:30:43 +0000
-From: buildd on mayer <buildd at mayer.debian.org>
-To: buildd-porters at mayer.debian.org,logs at buildd.debian.org
-Subject: Log for successful build of tabix_0.2.3-1 on mipsel (dist=sid)
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Post Build │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+Purging /var/lib/schroot/mount/sid-mips-sbuild-a34d86f6-cf16-4994-ae2c-91dd5a6eb44c/build/buildd-tabix_0.2.4-1-mips-BI6hFB
+Not cleaning session: cloned chroot in use
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Summary │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+Architecture: mips
+Build-Space: 1396
+Build-Time: 133
+Distribution: sid
+Install-Time: 63
+Job: tabix_0.2.4-1
+Package: tabix
+Package-Time: 300
+Source-Version: 0.2.4-1
+Space: 1396
+Status: successful
+Version: 0.2.4-1
+────────────────────────────────────────────────────────────────────────────────
+Finished at 20110412-1123
+Build needed 00:05:00, 1396k disc space
+Signature with key 'F4C69470' requested:
+
+From buildd at monteverdi.ayous.org Tue Apr 12 18:16:07 2011
+Return-path: <buildd at monteverdi.ayous.org>
+Received: from monteverdi.ayous.org ([2001:a60:f006:deb:20a:1ff:fe00:987])
+ by grieg.debian.org with esmtp (Exim 4.69)
+ (envelope-from <buildd at monteverdi.ayous.org>) id 1Q9i8E-0002gF-5a
+ for logs at buildd.debian.org; Tue, 12 Apr 2011 18:16:07 +0000
+Received: from buildd by monteverdi.ayous.org with local (Exim 4.69)
+ (envelope-from <buildd at monteverdi.ayous.org>)
+ id 1Q9hzT-0003MO-J3; Tue, 12 Apr 2011 18:07:03 +0000
+From: buildd on monteverdi <buildd at monteverdi.ayous.org>
+To: aba+buildd_monteverdi at not.so.argh.org,logs at buildd.debian.org
+Subject: Log for successful build of tabix_0.2.4-1 on mipsel (dist=sid)
Content-Type: text/plain; charset=UTF-8
Content-Transfer-Encoding: 8bit
-Message-Id: <E1Q0BPf-0003AK-1b at mayer.debian.org>
-Date: Thu, 17 Mar 2011 11:30:43 +0000
+Message-Id: <E1Q9hzT-0003MO-J3 at monteverdi.ayous.org>
+Date: Tue, 12 Apr 2011 18:07:03 +0000
Delivered-To: logs at buildd.debian.org
-sbuild (Debian sbuild) 0.60.5 (14 Nov 2010) on mayer.debian.org
+sbuild (Debian sbuild) 0.60.5 (14 Nov 2010) on monteverdi.ayous.org
╔══════════════════════════════════════════════════════════════════════════════╗
-║ tabix 0.2.3-1 (mipsel) 17 Mar 2011 11:29 ║
+║ tabix 0.2.4-1 (mipsel) 12 Apr 2011 18:03 ║
╚══════════════════════════════════════════════════════════════════════════════╝
Package: tabix
-Version: 0.2.3-1
+Version: 0.2.4-1
Architecture: mipsel
-Chroot Build Dir: /var/lib/schroot/mount/sid-mipsel-sbuild-3de713e2-9e7b-4cc8-a101-a4cb9772993b/build/buildd-tabix_0.2.3-1-mipsel-Aop1CG
-Start Time: 20110317-1129
-Hit http://debian.oregonstate.edu sid InRelease
-Hit http://debian.oregonstate.edu sid/main Sources
-Hit http://debian.oregonstate.edu sid/contrib Sources
-Hit http://debian.oregonstate.edu sid/main mipsel Packages
-Hit http://debian.oregonstate.edu sid/contrib mipsel Packages
-Ign http://debian.oregonstate.edu sid/contrib TranslationIndex
-Hit http://debian.oregonstate.edu sid/main TranslationIndex
-Ign http://debian.oregonstate.edu sid/contrib Translation-en
-Hit http://incoming.debian.org sid InRelease
+Chroot Build Dir: /var/lib/schroot/mount/sid-mipsel-sbuild-52aa155f-4ecf-42fe-9e05-8c4b8446ae04/build/buildd-tabix_0.2.4-1-mipsel-M1XQcD
+Start Time: 20110412-1803
+Get:1 http://incoming.debian.org unstable InRelease [151 kB]
+Get:2 http://mirror.ayous.org unstable InRelease [151 kB]
+Ign http://mirror.ayous.org unstable/contrib TranslationIndex
+Get:3 http://mirror.ayous.org unstable/main TranslationIndex [2264 B]
Ign http://incoming.debian.org InRelease
-Hit http://incoming.debian.org Release.gpg
-Hit http://incoming.debian.org sid/main Sources
-Hit http://incoming.debian.org sid/contrib Sources
-Hit http://incoming.debian.org sid/main mipsel Packages
-Hit http://incoming.debian.org sid/contrib mipsel Packages
-Ign http://incoming.debian.org sid/contrib TranslationIndex
-Hit http://incoming.debian.org sid/main TranslationIndex
-Hit http://incoming.debian.org Release
-Hit http://incoming.debian.org Sources
-Hit http://incoming.debian.org Packages
-Ign http://incoming.debian.org sid/contrib Translation-en
+Ign http://incoming.debian.org unstable/contrib TranslationIndex
+Get:4 http://mirror.ayous.org unstable/main Sources [6613 kB]
+Get:5 http://incoming.debian.org unstable/main TranslationIndex [2264 B]
+Get:6 http://incoming.debian.org Release.gpg [836 B]
+Get:7 http://incoming.debian.org unstable/main Sources [6613 kB]
+Get:8 http://mirror.ayous.org unstable/contrib Sources [57.0 kB]
+Get:9 http://mirror.ayous.org unstable/non-free Sources [116 kB]
+Get:10 http://mirror.ayous.org unstable/main mipsel Packages [9133 kB]
+Get:11 http://incoming.debian.org unstable/contrib Sources [57.0 kB]
+Get:12 http://incoming.debian.org unstable/non-free Sources [116 kB]
+Get:13 http://incoming.debian.org unstable/main mipsel Packages [9133 kB]
+Get:14 http://mirror.ayous.org unstable/contrib mipsel Packages [63.6 kB]
+Ign http://mirror.ayous.org unstable/contrib Translation-en
+Get:15 http://incoming.debian.org unstable/contrib mipsel Packages [63.6 kB]
+Get:16 http://incoming.debian.org Release [1604 B]
+Get:17 http://incoming.debian.org Sources [51.8 kB]
+Get:18 http://incoming.debian.org Packages [1050 kB]
+Ign http://incoming.debian.org unstable/contrib Translation-en
Ign http://incoming.debian.org Translation-en
+Fetched 33.4 MB in 48s (689 kB/s)
Reading package lists...
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -499,11 +583,11 @@ Building dependency tree...
Reading state information...
NOTICE: 'tabix' packaging is maintained in the 'Git' version control system at:
git://git.debian.org/debian-med/tabix.git
-Need to get 50.4 kB of source archives.
-Get:1 http://debian.oregonstate.edu/debian/ sid/main tabix 0.2.3-1 (dsc) [1882 B]
-Get:2 http://debian.oregonstate.edu/debian/ sid/main tabix 0.2.3-1 (tar) [46.4 kB]
-Get:3 http://debian.oregonstate.edu/debian/ sid/main tabix 0.2.3-1 (diff) [2130 B]
-Fetched 50.4 kB in 0s (880 kB/s)
+Need to get 58.4 kB of source archives.
+Get:1 http://mirror.ayous.org/debian/ unstable/main tabix 0.2.4-1 (dsc) [1882 B]
+Get:2 http://mirror.ayous.org/debian/ unstable/main tabix 0.2.4-1 (tar) [54.2 kB]
+Get:3 http://mirror.ayous.org/debian/ unstable/main tabix 0.2.4-1 (diff) [2322 B]
+Fetched 58.4 kB in 0s (115 kB/s)
Download complete and in download only mode
Check arch
@@ -518,36 +602,129 @@ Build-Depends: cdbs, debhelper (>= 8), zlib1g-dev
Checking for already installed source dependencies...
cdbs: missing
-debhelper: already installed (8.1.2 >= 8 is satisfied)
-zlib1g-dev: already installed (1:1.2.3.4.dfsg-3)
+debhelper: missing
+Using default version 8.1.3
+zlib1g-dev: missing
Checking for source dependency conflicts...
-Installing positive dependencies: cdbs
+Installing positive dependencies: cdbs debhelper zlib1g-dev
Reading package lists...
Building dependency tree...
Reading state information...
-The following packages were automatically installed and are no longer required:
- libpopt0 pkg-config udev zlib1g-dev
-Use 'apt-get autoremove' to remove them.
+The following extra packages will be installed:
+ bsdmainutils dpkg-dev file gettext gettext-base groff-base html2text
+ intltool-debian libcroco3 libdpkg-perl libglib2.0-0 libmagic1 libpcre3
+ libpipeline1 libunistring0 libxml2 man-db po-debconf
Suggested packages:
- devscripts doc-base
+ wamerican wordlist whois vacation devscripts doc-base dh-make debian-keyring
+ gettext-doc groff less www-browser libmail-box-perl
Recommended packages:
- autotools-dev
+ autotools-dev libalgorithm-merge-perl curl wget lynx-cur autopoint
+ libglib2.0-data shared-mime-info xml-core libmail-sendmail-perl
The following NEW packages will be installed:
- cdbs
+ bsdmainutils cdbs debhelper file gettext gettext-base groff-base html2text
+ intltool-debian libcroco3 libglib2.0-0 libmagic1 libpcre3 libpipeline1
+ libunistring0 libxml2 man-db po-debconf zlib1g-dev
+The following packages will be upgraded:
+ dpkg-dev libdpkg-perl
+2 upgraded, 19 newly installed, 0 to remove and 31 not upgraded.
+Need to get 12.0 MB of archives.
+After this operation, 31.2 MB of additional disk space will be used.
+Get:1 http://mirror.ayous.org/debian/ unstable/main bsdmainutils mipsel 8.2.2 [207 kB]
+Get:2 http://mirror.ayous.org/debian/ unstable/main groff-base mipsel 1.21-5 [1154 kB]
+Get:3 http://mirror.ayous.org/debian/ unstable/main libpipeline1 mipsel 1.2.0-1 [35.1 kB]
+Get:4 http://mirror.ayous.org/debian/ unstable/main man-db mipsel 2.6.0.1-1 [995 kB]
+Get:5 http://mirror.ayous.org/debian/ unstable/main libmagic1 mipsel 5.04-5 [238 kB]
+Get:6 http://mirror.ayous.org/debian/ unstable/main file mipsel 5.04-5 [49.5 kB]
+Get:7 http://mirror.ayous.org/debian/ unstable/main gettext-base mipsel 0.18.1.1-3 [152 kB]
+Get:8 http://mirror.ayous.org/debian/ unstable/main libpcre3 mipsel 8.12-3 [262 kB]
+Get:9 http://mirror.ayous.org/debian/ unstable/main libxml2 mipsel 2.7.8.dfsg-2 [833 kB]
+Get:10 http://mirror.ayous.org/debian/ unstable/main dpkg-dev mipsel 1.16.0.1 [871 kB]
+Get:11 http://mirror.ayous.org/debian/ unstable/main libdpkg-perl mipsel 1.16.0.1 [748 kB]
+Get:12 http://mirror.ayous.org/debian/ unstable/main html2text mipsel 1.3.2a-15 [103 kB]
+Get:13 http://mirror.ayous.org/debian/ unstable/main libglib2.0-0 mipsel 2.28.4-1 [1499 kB]
+Get:14 http://mirror.ayous.org/debian/ unstable/main libcroco3 mipsel 0.6.2-1 [110 kB]
+Get:15 http://mirror.ayous.org/debian/ unstable/main libunistring0 mipsel 0.9.3-3 [411 kB]
+Get:16 http://mirror.ayous.org/debian/ unstable/main gettext mipsel 0.18.1.1-3 [2023 kB]
+Get:17 http://mirror.ayous.org/debian/ unstable/main intltool-debian mipsel 0.35.0+20060710.1 [30.8 kB]
+Get:18 http://mirror.ayous.org/debian/ unstable/main po-debconf mipsel 1.0.16+nmu1 [223 kB]
+Get:19 http://mirror.ayous.org/debian/ unstable/main debhelper mipsel 8.1.3 [554 kB]
+Get:20 http://mirror.ayous.org/debian/ unstable/main cdbs mipsel 0.4.92 [1268 kB]
+Get:21 http://mirror.ayous.org/debian/ unstable/main zlib1g-dev mipsel 1:1.2.3.4.dfsg-3 [192 kB]
debconf: delaying package configuration, since apt-utils is not installed
-0 upgraded, 1 newly installed, 0 to remove and 6 not upgraded.
-Need to get 0 B/1268 kB of archives.
-After this operation, 1757 kB of additional disk space will be used.
+Fetched 12.0 MB in 2s (4895 kB/s)
+Selecting previously deselected package bsdmainutils.
+(Reading database ... 10124 files and directories currently installed.)
+Unpacking bsdmainutils (from .../bsdmainutils_8.2.2_mipsel.deb) ...
+Selecting previously deselected package groff-base.
+Unpacking groff-base (from .../groff-base_1.21-5_mipsel.deb) ...
+Selecting previously deselected package libpipeline1.
+Unpacking libpipeline1 (from .../libpipeline1_1.2.0-1_mipsel.deb) ...
+Selecting previously deselected package man-db.
+Unpacking man-db (from .../man-db_2.6.0.1-1_mipsel.deb) ...
+Selecting previously deselected package libmagic1.
+Unpacking libmagic1 (from .../libmagic1_5.04-5_mipsel.deb) ...
+Selecting previously deselected package file.
+Unpacking file (from .../file_5.04-5_mipsel.deb) ...
+Selecting previously deselected package gettext-base.
+Unpacking gettext-base (from .../gettext-base_0.18.1.1-3_mipsel.deb) ...
+Selecting previously deselected package libpcre3.
+Unpacking libpcre3 (from .../libpcre3_8.12-3_mipsel.deb) ...
+Selecting previously deselected package libxml2.
+Unpacking libxml2 (from .../libxml2_2.7.8.dfsg-2_mipsel.deb) ...
+Preparing to replace dpkg-dev 1.15.8.10 (using .../dpkg-dev_1.16.0.1_mipsel.deb) ...
+Unpacking replacement dpkg-dev ...
+Preparing to replace libdpkg-perl 1.15.8.10 (using .../libdpkg-perl_1.16.0.1_mipsel.deb) ...
+Unpacking replacement libdpkg-perl ...
+Selecting previously deselected package html2text.
+Unpacking html2text (from .../html2text_1.3.2a-15_mipsel.deb) ...
+Selecting previously deselected package libglib2.0-0.
+Unpacking libglib2.0-0 (from .../libglib2.0-0_2.28.4-1_mipsel.deb) ...
+Selecting previously deselected package libcroco3.
+Unpacking libcroco3 (from .../libcroco3_0.6.2-1_mipsel.deb) ...
+Selecting previously deselected package libunistring0.
+Unpacking libunistring0 (from .../libunistring0_0.9.3-3_mipsel.deb) ...
+Selecting previously deselected package gettext.
+Unpacking gettext (from .../gettext_0.18.1.1-3_mipsel.deb) ...
+Selecting previously deselected package intltool-debian.
+Unpacking intltool-debian (from .../intltool-debian_0.35.0+20060710.1_mipsel.deb) ...
+Selecting previously deselected package po-debconf.
+Unpacking po-debconf (from .../po-debconf_1.0.16+nmu1_mipsel.deb) ...
+Selecting previously deselected package debhelper.
+Unpacking debhelper (from .../debhelper_8.1.3_mipsel.deb) ...
Selecting previously deselected package cdbs.
-(Reading database ... 11911 files and directories currently installed.)
-Unpacking cdbs (from .../archives/cdbs_0.4.92_all.deb) ...
-Processing triggers for man-db ...
+Unpacking cdbs (from .../cdbs_0.4.92_mipsel.deb) ...
+Selecting previously deselected package zlib1g-dev.
+Unpacking zlib1g-dev (from .../zlib1g-dev_1%3a1.2.3.4.dfsg-3_mipsel.deb) ...
+Setting up bsdmainutils (8.2.2) ...
+update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode.
+update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode.
+Setting up groff-base (1.21-5) ...
+Setting up libpipeline1 (1.2.0-1) ...
+Setting up man-db (2.6.0.1-1) ...
+Building database of manual pages ...
+Setting up libmagic1 (5.04-5) ...
+Setting up file (5.04-5) ...
+Setting up gettext-base (0.18.1.1-3) ...
+Setting up libpcre3 (8.12-3) ...
+Setting up libxml2 (2.7.8.dfsg-2) ...
+Setting up libdpkg-perl (1.16.0.1) ...
+Setting up dpkg-dev (1.16.0.1) ...
+Setting up html2text (1.3.2a-15) ...
+Setting up libglib2.0-0 (2.28.4-1) ...
+No schema files found: doing nothing.
+Setting up libcroco3 (0.6.2-1) ...
+Setting up libunistring0 (0.9.3-3) ...
+Setting up gettext (0.18.1.1-3) ...
+Setting up intltool-debian (0.35.0+20060710.1) ...
+Setting up po-debconf (1.0.16+nmu1) ...
+Setting up debhelper (8.1.3) ...
Setting up cdbs (0.4.92) ...
+Setting up zlib1g-dev (1:1.2.3.4.dfsg-3) ...
Removing negative dependencies:
Checking correctness of source dependencies...
-Kernel: Linux 2.6.32-5-sb1-bcm91250a mipsel (mips64)
-Toolchain package versions: libc6-dev_2.11.2-11 dpkg-dev_1.15.8.10 linux-libc-dev_2.6.37-2 gcc-4.4_4.4.5-13 g++-4.4_4.4.5-13 binutils_2.21.0.20110302-1 libstdc++6-4.4-dev_4.4.5-13 libstdc++6_4.5.2-6
-Package versions: apt_0.8.12 base-files_6.1 base-passwd_3.5.22 bash_4.1-3 binutils_2.21.0.20110302-1 bsdmainutils_8.2.2 bsdutils_1:2.17.2-9.1 build-essential_11.5 bzip2_1.0.5-6 cdbs_0.4.92 coreutils_8.5-1 cpio_2.11-7 cpp_4:4.4.5-4 cpp-4.4_4.4.5-13 dash_0.5.5.1-7.4 debconf_1.5.38 debconf-i18n_1.5.38 debhelper_8.1.2 debian-archive-keyring_2010.08.28 debianutils_3.4.4 diffutils_1:3.0-1 dmsetup_2:1.02.63-2 dpkg_1.15.8.10 dpkg-dev_1.15.8.10 e2fslibs_1.41.12-2 e2fsprogs_1.41.12-2 fakeroot_1.14.5-2 file_5.04-5 findutils_4.4.2-1+b1 g++_4:4.4.5-4 g++-4.4_4.4.5-13 gcc_4:4.4.5-4 gcc-4.3-base_4.3.5-4 gcc-4.4_4.4.5-13 gcc-4.4-base_4.4.5-13 gcc-4.5-base_4.5.2-6 gettext_0.18.1.1-3 gettext-base_0.18.1.1-3 gnupg_1.4.11-3 gpgv_1.4.11-3 grep_2.6.3-3 groff-base_1.21-4 gzip_1.3.12-9 hostname_3.06 html2text_1.3.2a-15 initscripts_2.88dsf-13.1 insserv_1.14.0-2 intltool-debian_0.35.0+20060710.1 libacl1_2.2.49-4 libattr1_1:2.4.44-2 libblkid1_2.17.2-9.1 libbz2-1.0_1.0.5-6 libc-bin_2.11.2-11 libc-dev-bin_2.11.2-11 libc6_2.11.2-11 libc6-dev_2.11.2-11 libcomerr2_1.41.12-2 libcroco3_0.6.2-1 libdb4.7_4.7.25-12 libdb4.8_4.8.30-5 libdevmapper1.02.1_2:1.02.63-2 libdpkg-perl_1.15.8.10 libgcc1_1:4.5.2-6 libgdbm3_1.8.3-9 libglib2.0-0_2.28.2-1 libgmp10_2:5.0.1+dfsg-6 libgmp3c2_2:4.3.2+dfsg-1 libgomp1_4.5.2-6 liblocale-gettext-perl_1.05-6 liblzma1_4.999.9beta+20091116-1 liblzma2_5.0.0-2 libmagic1_5.04-5 libmpfr1ldbl_2.4.2-3 libmpfr4_3.0.0-9 libncurses5_5.8+20110307-1 libncursesw5_5.8+20110307-1 libpam-modules_1.1.2-2 libpam-runtime_1.1.2-2 libpam0g_1.1.2-2 libpcre3_8.12-3 libpipeline1_1.1.0-1 libpopt0_1.16-1 libreadline6_6.1-3 libselinux1_2.0.96-1 libsepol1_2.0.42-1 libslang2_2.2.2-4 libss2_1.41.12-2 libstdc++6_4.5.2-6 libstdc++6-4.4-dev_4.4.5-13 libtext-charwidth-perl_0.04-6 libtext-iconv-perl_1.7-2 libtext-wrapi18n-perl_0.06-7 libtimedate-perl_1.2000-1 libudev0_166-1 libunistring0_0.9.3-3 libusb-0.1-4_2:0.1.12-17 libuuid1_2.17.2-9.1 libxml2_2.7.8.dfsg-2 linux-libc-dev_2.6.37-2 login_1:4.1.4.2+svn3283-3 lsb-base_3.2-27 lzma_4.43-14 make_3.81-8 man-db_2.5.9-4 mawk_1.3.3-15 mount_2.17.2-9.1 ncurses-base_5.8+20110307-1 ncurses-bin_5.8+20110307-1 passwd_1:4.1.4.2+svn3283-3 patch_2.6.1-1 perl_5.10.1-17 perl-base_5.10.1-17 perl-modules_5.10.1-17 pkg-config_0.25-1.1 po-debconf_1.0.16+nmu1 procps_1:3.2.8-10 readline-common_6.1-3 sed_4.2.1-9 sensible-utils_0.0.6 sysv-rc_2.88dsf-13.1 sysvinit_2.88dsf-13.1 sysvinit-utils_2.88dsf-13.1 tar_1.25-3 tzdata_2011d-1 udev_166-1 util-linux_2.17.2-9.1 xz-utils_5.0.0-2 zlib1g_1:1.2.3.4.dfsg-3 zlib1g-dev_1:1.2.3.4.dfsg-3
+Kernel: Linux 2.6.33-rc7 mipsel (mips64)
+Toolchain package versions: libc6-dev_2.11.2-11 dpkg-dev_1.16.0.1 linux-libc-dev_2.6.37-2 gcc-4.4_4.4.5-13 g++-4.4_4.4.5-13 binutils_2.21.0.20110302-1 libstdc++6-4.4-dev_4.4.5-13 libstdc++6_4.5.2-4
+Package versions: apt_0.8.12 base-files_6.1 base-passwd_3.5.22 bash_4.1-3 binutils_2.21.0.20110302-1 bsdmainutils_8.2.2 bsdutils_1:2.17.2-9.1 build-essential_11.5 bzip2_1.0.5-6 cdbs_0.4.92 coreutils_8.5-1 cpp_4:4.4.5-4 cpp-4.4_4.4.5-13 dash_0.5.5.1-7.4 debconf_1.5.38 debconf-english_1.5.38 debfoster_2.7-1.1 debhelper_8.1.3 debian-archive-keyring_2010.08.28 debianutils_3.4.4 diffutils_1:3.0-1 dpkg_1.15.8.10 dpkg-dev_1.16.0.1 e2fslibs_1.41.12-2 e2fsprogs_1.41.12-2 fakeroot_1.14.5-2 file_5.04-5 findutils_4.4.2-1+b1 g++_4:4.4.5-4 g++-4.4_4.4.5-13 gcc_4:4.4.5-4 gcc-4.4_4.4.5-13 gcc-4.4-base_4.4.5-13 gcc-4.5-base_4.5.2-4 gettext_0.18.1.1-3 gettext-base_0.18.1.1-3 gnupg_1.4.11-3 gpgv_1.4.11-3 grep_2.6.3-3 groff-base_1.21-5 gzip_1.3.12-9 hostname_3.06 html2text_1.3.2a-15 initscripts_2.88dsf-13.1 insserv_1.14.0-2 intltool-debian_0.35.0+20060710.1 libacl1_2.2.49-4 libattr1_1:2.4.44-2 libblkid1_2.17.2-9.1 libbz2-1.0_1.0.5-6 libc-bin_2.11.2-11 libc-dev-bin_2.11.2-11 libc6_2.11.2-11 libc6-dev_2.11.2-11 libcomerr2_1.41.12-2 libcroco3_0.6.2-1 libdb4.7_4.7.25-12 libdb4.8_4.8.30-5 libdpkg-perl_1.16.0.1 libgc1c2_1:7.1-7 libgcc1_1:4.5.2-4 libgdbm3_1.8.3-9 libglib2.0-0_2.28.4-1 libgmp10_2:5.0.1+dfsg-6 libgmp3c2_2:4.3.2+dfsg-1 libgomp1_4.5.2-4 liblocale-gettext-perl_1.05-6 liblzma2_5.0.0-2 libmagic1_5.04-5 libmpfr1ldbl_2.4.2-3 libmpfr4_3.0.0-9 libncurses5_5.8+20110307-1 libpam-modules_1.1.2-2 libpam-runtime_1.1.2-2 libpam0g_1.1.2-2 libpcre3_8.12-3 libpipeline1_1.2.0-1 libreadline6_6.1-3 libselinux1_2.0.96-1 libsepol1_2.0.42-1 libslang2_2.2.2-4 libss2_1.41.12-2 libstdc++6_4.5.2-4 libstdc++6-4.4-dev_4.4.5-13 libtext-charwidth-perl_0.04-6 libtext-iconv-perl_1.7-2 libtext-wrapi18n-perl_0.06-7 libtimedate-perl_1.2000-1 libunistring0_0.9.3-3 libusb-0.1-4_2:0.1.12-17 libuuid1_2.17.2-9.1 libxml2_2.7.8.dfsg-2 linux-libc-dev_2.6.37-2 login_1:4.1.4.2+svn3283-3 lsb-base_3.2-27 make_3.81-8 man-db_2.6.0.1-1 mawk_1.3.3-15 mount_2.17.2-9.1 ncurses-base_5.8+20110307-1 ncurses-bin_5.8+20110307-1 passwd_1:4.1.4.2+svn3283-3 patch_2.6.1-1 perl_5.10.1-17 perl-base_5.10.1-17 perl-modules_5.10.1-17 po-debconf_1.0.16+nmu1 readline-common_6.1-3 sed_4.2.1-9 sensible-utils_0.0.6 sudo_1.7.4p6-1 sysv-rc_2.88dsf-13.1 sysvinit_2.88dsf-13.1 sysvinit-utils_2.88dsf-13.1 tar_1.25-3 tzdata_2011c-1 util-linux_2.17.2-9.1 xz-utils_5.0.0-2 zlib1g_1:1.2.3.4.dfsg-3 zlib1g-dev_1:1.2.3.4.dfsg-3
┌──────────────────────────────────────────────────────────────────────────────┐
│ Build │
@@ -559,12 +736,12 @@ Unpack source
dpkg-source: warning: -sn is not a valid option for Dpkg::Source::Package::V3::quilt
gpgv: keyblock resource `/home/buildd/.gnupg/trustedkeys.gpg': file open error
-gpgv: Signature made Wed Jan 19 13:19:58 2011 UTC using RSA key ID 2295D502
+gpgv: Signature made Tue Apr 12 08:22:29 2011 UTC using RSA key ID 2295D502
gpgv: Can't check signature: public key not found
-dpkg-source: warning: failed to verify signature on ./tabix_0.2.3-1.dsc
-dpkg-source: info: extracting tabix in tabix-0.2.3
-dpkg-source: info: unpacking tabix_0.2.3.orig.tar.bz2
-dpkg-source: info: unpacking tabix_0.2.3-1.debian.tar.gz
+dpkg-source: warning: failed to verify signature on ./tabix_0.2.4-1.dsc
+dpkg-source: info: extracting tabix in tabix-0.2.4
+dpkg-source: info: unpacking tabix_0.2.4.orig.tar.bz2
+dpkg-source: info: unpacking tabix_0.2.4-1.debian.tar.gz
Check disc space
────────────────
@@ -579,38 +756,39 @@ dpkg-buildpackage: export CXXFLAGS from dpkg-buildflags (origin: vendor): -g -O2
dpkg-buildpackage: export FFLAGS from dpkg-buildflags (origin: vendor): -g -O2
dpkg-buildpackage: export LDFLAGS from dpkg-buildflags (origin: vendor):
dpkg-buildpackage: source package tabix
-dpkg-buildpackage: source version 0.2.3-1
- dpkg-source --before-build tabix-0.2.3
+dpkg-buildpackage: source version 0.2.4-1
+ dpkg-source --before-build tabix-0.2.4
dpkg-buildpackage: host architecture mipsel
/usr/bin/fakeroot debian/rules clean
test -x debian/rules
dh_testroot
rm -f debian/stamp-makefile-build debian/stamp-makefile-install
/usr/bin/make -C . CFLAGS="-g -O2 -g -O2" CXXFLAGS="-g -O2 -g -O2" CPPFLAGS="" LDFLAGS="" -k clean
-make[1]: Entering directory `/build/buildd-tabix_0.2.3-1-mipsel-Aop1CG/tabix-0.2.3'
-make[2]: Entering directory `/build/buildd-tabix_0.2.3-1-mipsel-Aop1CG/tabix-0.2.3'
+make[1]: Entering directory `/build/buildd-tabix_0.2.4-1-mipsel-M1XQcD/tabix-0.2.4'
+make[2]: Entering directory `/build/buildd-tabix_0.2.4-1-mipsel-M1XQcD/tabix-0.2.4'
rm -fr gmon.out *.o a.out *.dSYM tabix bgzip *~ *.a tabix.aux tabix.log tabix.pdf *.class libtabix.*.dylib libtabix.so*
-make[2]: Leaving directory `/build/buildd-tabix_0.2.3-1-mipsel-Aop1CG/tabix-0.2.3'
-make[1]: Leaving directory `/build/buildd-tabix_0.2.3-1-mipsel-Aop1CG/tabix-0.2.3'
+make[2]: Leaving directory `/build/buildd-tabix_0.2.4-1-mipsel-M1XQcD/tabix-0.2.4'
+make[1]: Leaving directory `/build/buildd-tabix_0.2.4-1-mipsel-M1XQcD/tabix-0.2.4'
dh_clean
debian/rules build
test -x debian/rules
mkdir -p "."
/usr/share/cdbs/1/rules/buildcore.mk:109: WARNING: DEB_COMPRESS_EXCLUDE is a deprecated variable
/usr/bin/make -C . CFLAGS="-g -O2 -g -O2" CXXFLAGS="-g -O2 -g -O2" CPPFLAGS="" LDFLAGS=""
-make[1]: Entering directory `/build/buildd-tabix_0.2.3-1-mipsel-Aop1CG/tabix-0.2.3'
-make[2]: Entering directory `/build/buildd-tabix_0.2.3-1-mipsel-Aop1CG/tabix-0.2.3'
+make[1]: Entering directory `/build/buildd-tabix_0.2.4-1-mipsel-M1XQcD/tabix-0.2.4'
+make[2]: Entering directory `/build/buildd-tabix_0.2.4-1-mipsel-M1XQcD/tabix-0.2.4'
gcc -c -g -O2 -g -O2 -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE bgzf.c -o bgzf.o
gcc -c -g -O2 -g -O2 -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE kstring.c -o kstring.o
gcc -c -g -O2 -g -O2 -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE knetfile.c -o knetfile.o
gcc -c -g -O2 -g -O2 -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE index.c -o index.o
-ar -cru libtabix.a bgzf.o kstring.o knetfile.o index.o
+gcc -c -g -O2 -g -O2 -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE bedidx.c -o bedidx.o
+ar -cru libtabix.a bgzf.o kstring.o knetfile.o index.o bedidx.o
gcc -c -g -O2 -g -O2 -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE main.c -o main.o
gcc -g -O2 -g -O2 -o tabix main.o -lm -lz -L. -ltabix
gcc -c -g -O2 -g -O2 -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE bgzip.c -o bgzip.o
gcc -g -O2 -g -O2 -o bgzip bgzip.o bgzf.o knetfile.o -lz
-make[2]: Leaving directory `/build/buildd-tabix_0.2.3-1-mipsel-Aop1CG/tabix-0.2.3'
-make[1]: Leaving directory `/build/buildd-tabix_0.2.3-1-mipsel-Aop1CG/tabix-0.2.3'
+make[2]: Leaving directory `/build/buildd-tabix_0.2.4-1-mipsel-M1XQcD/tabix-0.2.4'
+make[1]: Leaving directory `/build/buildd-tabix_0.2.4-1-mipsel-M1XQcD/tabix-0.2.4'
touch debian/stamp-makefile-build
DEB_MAKE_CHECK_TARGET unset, not running checks
/usr/bin/fakeroot debian/rules binary-arch
@@ -655,58 +833,59 @@ dpkg-shlibdeps: warning: dependency on libm.so.6 could be avoided if "debian/tab
dh_gencontrol -ptabix
dh_md5sums -ptabix
dh_builddeb -ptabix
-dpkg-deb: building package `tabix' in `../tabix_0.2.3-1_mipsel.deb'.
- dpkg-genchanges -B -mmipsel Build Daemon (mayer) <buildd_mips-mayer at buildd.debian.org> >../tabix_0.2.3-1_mipsel.changes
+dpkg-deb: building package `tabix' in `../tabix_0.2.4-1_mipsel.deb'.
+ dpkg-genchanges -B -mmipsel Build Daemon (monteverdi) <buildd_mipsel-monteverdi at buildd.debian.org> >../tabix_0.2.4-1_mipsel.changes
dpkg-genchanges: arch-specific upload - not including arch-independent packages
dpkg-genchanges: binary-only upload - not including any source code
- dpkg-source --after-build tabix-0.2.3
+ dpkg-source --after-build tabix-0.2.4
dpkg-buildpackage: binary only upload (no source included)
────────────────────────────────────────────────────────────────────────────────
-Build finished at 20110317-1130
+Build finished at 20110412-1806
-tabix_0.2.3-1_mipsel.changes:
+tabix_0.2.4-1_mipsel.changes:
Format: 1.8
-Date: Wed, 19 Jan 2011 22:16:39 +0900
+Date: Tue, 12 Apr 2011 17:15:33 +0900
Source: tabix
Binary: tabix
Architecture: mipsel
-Version: 0.2.3-1
+Version: 0.2.4-1
Distribution: sid
Urgency: low
-Maintainer: mipsel Build Daemon (mayer) <buildd_mips-mayer at buildd.debian.org>
+Maintainer: mipsel Build Daemon (monteverdi) <buildd_mipsel-monteverdi at buildd.debian.org>
Changed-By: Charles Plessy <plessy at debian.org>
Description:
tabix - generic indexer for TAB-delimited genome position files
-Closes: 606446
Changes:
- tabix (0.2.3-1) unstable; urgency=low
+ tabix (0.2.4-1) unstable; urgency=low
.
- * Initial release (Closes: #606446)
+ * New upstream release.
+ * Incremented Standards-Version to reflect conformance with Policy 3.9.2
+ (debian/control).
Checksums-Sha1:
- ff4924b5ea517b138c7f79af0f126506fdb2a15e 55022 tabix_0.2.3-1_mipsel.deb
+ 1c95d4c5e4648c65d2e2040524a4dd3e3695a053 60584 tabix_0.2.4-1_mipsel.deb
Checksums-Sha256:
- bb9a01e489e29083a4d22550ea25dd54676b91a8732c8660ebad9d2e99008f03 55022 tabix_0.2.3-1_mipsel.deb
+ 8ab1a6c9f35869a690ef29a61c98a7fbab01b39f78387aaf761729ff4a1d625b 60584 tabix_0.2.4-1_mipsel.deb
Files:
- eae2eeb50bc85220f3ab6f7c1835427c 55022 science optional tabix_0.2.3-1_mipsel.deb
+ 8ef42dec146f1a59539fb5fb3b270b15 60584 science optional tabix_0.2.4-1_mipsel.deb
┌──────────────────────────────────────────────────────────────────────────────┐
│ Package contents │
└──────────────────────────────────────────────────────────────────────────────┘
-tabix_0.2.3-1_mipsel.deb
+tabix_0.2.4-1_mipsel.deb
────────────────────────
new debian package, version 2.0.
- size 55022 bytes: control archive= 960 bytes.
- 779 bytes, 16 lines control
+ size 60584 bytes: control archive= 964 bytes.
+ 786 bytes, 16 lines control
587 bytes, 9 lines md5sums
Package: tabix
- Version: 0.2.3-1
+ Version: 0.2.4-1
Architecture: mipsel
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
- Installed-Size: 168
- Depends: libc6 (>= 2.7), zlib1g (>= 1:1.1.4)
+ Installed-Size: 184
+ Depends: libc6 (>= 2.7), zlib1g (>= 1:1.2.3.3.dfsg)
Section: science
Priority: optional
Homepage: http://samtools.sourceforge.net/tabix.shtml
@@ -718,25 +897,25 @@ tabix_0.2.3-1_mipsel.deb
chromosomal coordinates. Fast data retrieval also works over network if an URI
is given as a file name.
-drwxr-xr-x root/root 0 2011-03-17 11:30 ./
-drwxr-xr-x root/root 0 2011-03-17 11:30 ./usr/
-drwxr-xr-x root/root 0 2011-03-17 11:30 ./usr/share/
-drwxr-xr-x root/root 0 2011-03-17 11:30 ./usr/share/doc/
-drwxr-xr-x root/root 0 2011-03-17 11:30 ./usr/share/doc/tabix/
--rw-r--r-- root/root 1346 2011-01-19 13:03 ./usr/share/doc/tabix/copyright
-drwxr-xr-x root/root 0 2011-03-17 11:30 ./usr/share/doc/tabix/examples/
+drwxr-xr-x root/root 0 2011-04-12 18:06 ./
+drwxr-xr-x root/root 0 2011-04-12 18:06 ./usr/
+drwxr-xr-x root/root 0 2011-04-12 18:06 ./usr/share/
+drwxr-xr-x root/root 0 2011-04-12 18:06 ./usr/share/doc/
+drwxr-xr-x root/root 0 2011-04-12 18:06 ./usr/share/doc/tabix/
+-rw-r--r-- root/root 3487 2011-04-10 19:21 ./usr/share/doc/tabix/changelog.gz
+-rw-r--r-- root/root 262 2011-04-12 08:16 ./usr/share/doc/tabix/changelog.Debian.gz
+drwxr-xr-x root/root 0 2011-04-12 18:06 ./usr/share/doc/tabix/examples/
-rw-r--r-- root/root 3778 2010-12-08 17:34 ./usr/share/doc/tabix/examples/example.gtf.gz
--rw-r--r-- root/root 260 2010-12-08 17:34 ./usr/share/doc/tabix/examples/example.gtf.gz.tbi
--rw-r--r-- root/root 2920 2010-12-08 17:38 ./usr/share/doc/tabix/changelog.gz
--rw-r--r-- root/root 944 2010-12-08 17:38 ./usr/share/doc/tabix/NEWS.gz
--rw-r--r-- root/root 154 2011-01-19 13:16 ./usr/share/doc/tabix/changelog.Debian.gz
-drwxr-xr-x root/root 0 2011-03-17 11:30 ./usr/share/man/
-drwxr-xr-x root/root 0 2011-03-17 11:30 ./usr/share/man/man1/
--rw-r--r-- root/root 1716 2011-03-17 11:30 ./usr/share/man/man1/tabix.1.gz
-drwxr-xr-x root/root 0 2011-03-17 11:30 ./usr/bin/
--rwxr-xr-x root/root 67960 2011-03-17 11:30 ./usr/bin/tabix
--rwxr-xr-x root/root 28540 2011-03-17 11:30 ./usr/bin/bgzip
-lrwxrwxrwx root/root 0 2011-03-17 11:30 ./usr/share/man/man1/bgzip.1.gz -> tabix.1.gz
+-rw-r--r-- root/root 259 2011-04-10 19:21 ./usr/share/doc/tabix/examples/example.gtf.gz.tbi
+-rw-r--r-- root/root 1169 2011-04-10 19:21 ./usr/share/doc/tabix/NEWS.gz
+-rw-r--r-- root/root 1473 2011-04-12 07:17 ./usr/share/doc/tabix/copyright
+drwxr-xr-x root/root 0 2011-04-12 18:06 ./usr/share/man/
+drwxr-xr-x root/root 0 2011-04-12 18:06 ./usr/share/man/man1/
+-rw-r--r-- root/root 1834 2011-04-12 18:06 ./usr/share/man/man1/tabix.1.gz
+drwxr-xr-x root/root 0 2011-04-12 18:06 ./usr/bin/
+-rwxr-xr-x root/root 28876 2011-04-12 18:06 ./usr/bin/bgzip
+-rwxr-xr-x root/root 78504 2011-04-12 18:06 ./usr/bin/tabix
+lrwxrwxrwx root/root 0 2011-04-12 18:06 ./usr/share/man/man1/bgzip.1.gz -> tabix.1.gz
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -745,11 +924,9 @@ lrwxrwxrwx root/root 0 2011-03-17 11:30 ./usr/share/man/man1/bgzip.1.gz
Built successfully
────────────────────────────────────────────────────────────────────────────────
-Purging /var/lib/schroot/mount/sid-mipsel-sbuild-3de713e2-9e7b-4cc8-a101-a4cb9772993b/build/buildd-tabix_0.2.3-1-mipsel-Aop1CG
-(Reading database ... 11965 files and directories currently installed.)
-Removing cdbs ...
-Processing triggers for man-db ...
+Purging /var/lib/schroot/mount/sid-mipsel-sbuild-52aa155f-4ecf-42fe-9e05-8c4b8446ae04/build/buildd-tabix_0.2.4-1-mipsel-M1XQcD
+Not removing build depends: cloned chroot in use
────────────────────────────────────────────────────────────────────────────────
-Finished at 20110317-1130
-Build needed 00:01:32, 1240k disc space
+Finished at 20110412-1806
+Build needed 00:03:40, 1396k disc space
diff --git a/mipsel.log b/mipsel.log
index dd1d6aa..10c6cfc 100644
--- a/mipsel.log
+++ b/mipsel.log
@@ -1,65 +1,57 @@
-From buildd at mayer.debian.org Thu Mar 17 11:30:50 2011
-Return-path: <buildd at mayer.debian.org>
-Received: from merikanto.debian.org ([2001:858:2:2:216:35ff:fec4:a49a])
- from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
- CN=merikanto.debian.org,
- EMAIL=hostmaster at merikanto.debian.org (verified)
- by grieg.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
- (Exim 4.69) (envelope-from <buildd at mayer.debian.org>)
- id 1Q0BPl-0003Rr-Og
- for logs at buildd.debian.org; Thu, 17 Mar 2011 11:30:50 +0000
-Received: from mayer.debian.org ([140.211.166.78])
- from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
- CN=mayer.debian.org, EMAIL=hostmaster at mayer.debian.org (verified)
- by merikanto.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
- (Exim 4.69) (envelope-from <buildd at mayer.debian.org>)
- id 1Q0BPh-0001Fw-AN
- for logs at buildd.debian.org; Thu, 17 Mar 2011 11:30:45 +0000
-Received: from buildd by mayer.debian.org with local (Exim 4.69)
- (envelope-from <buildd at mayer.debian.org>)
- id 1Q0BPf-0003AK-1b; Thu, 17 Mar 2011 11:30:43 +0000
-From: buildd on mayer <buildd at mayer.debian.org>
-To: buildd-porters at mayer.debian.org,logs at buildd.debian.org
-Subject: Log for successful build of tabix_0.2.3-1 on mipsel (dist=sid)
+From buildd at monteverdi.ayous.org Tue Apr 12 18:16:07 2011
+Return-path: <buildd at monteverdi.ayous.org>
+Received: from monteverdi.ayous.org ([2001:a60:f006:deb:20a:1ff:fe00:987])
+ by grieg.debian.org with esmtp (Exim 4.69)
+ (envelope-from <buildd at monteverdi.ayous.org>) id 1Q9i8E-0002gF-5a
+ for logs at buildd.debian.org; Tue, 12 Apr 2011 18:16:07 +0000
+Received: from buildd by monteverdi.ayous.org with local (Exim 4.69)
+ (envelope-from <buildd at monteverdi.ayous.org>)
+ id 1Q9hzT-0003MO-J3; Tue, 12 Apr 2011 18:07:03 +0000
+From: buildd on monteverdi <buildd at monteverdi.ayous.org>
+To: aba+buildd_monteverdi at not.so.argh.org,logs at buildd.debian.org
+Subject: Log for successful build of tabix_0.2.4-1 on mipsel (dist=sid)
Content-Type: text/plain; charset=UTF-8
Content-Transfer-Encoding: 8bit
-Message-Id: <E1Q0BPf-0003AK-1b at mayer.debian.org>
-Date: Thu, 17 Mar 2011 11:30:43 +0000
+Message-Id: <E1Q9hzT-0003MO-J3 at monteverdi.ayous.org>
+Date: Tue, 12 Apr 2011 18:07:03 +0000
Delivered-To: logs at buildd.debian.org
-sbuild (Debian sbuild) 0.60.5 (14 Nov 2010) on mayer.debian.org
+sbuild (Debian sbuild) 0.60.5 (14 Nov 2010) on monteverdi.ayous.org
╔══════════════════════════════════════════════════════════════════════════════╗
-║ tabix 0.2.3-1 (mipsel) 17 Mar 2011 11:29 ║
+║ tabix 0.2.4-1 (mipsel) 12 Apr 2011 18:03 ║
╚══════════════════════════════════════════════════════════════════════════════╝
Package: tabix
-Version: 0.2.3-1
+Version: 0.2.4-1
Architecture: mipsel
-Chroot Build Dir: /var/lib/schroot/mount/sid-mipsel-sbuild-3de713e2-9e7b-4cc8-a101-a4cb9772993b/build/buildd-tabix_0.2.3-1-mipsel-Aop1CG
-Start Time: 20110317-1129
-Hit http://debian.oregonstate.edu sid InRelease
-Hit http://debian.oregonstate.edu sid/main Sources
-Hit http://debian.oregonstate.edu sid/contrib Sources
-Hit http://debian.oregonstate.edu sid/main mipsel Packages
-Hit http://debian.oregonstate.edu sid/contrib mipsel Packages
-Ign http://debian.oregonstate.edu sid/contrib TranslationIndex
-Hit http://debian.oregonstate.edu sid/main TranslationIndex
-Ign http://debian.oregonstate.edu sid/contrib Translation-en
-Hit http://incoming.debian.org sid InRelease
+Chroot Build Dir: /var/lib/schroot/mount/sid-mipsel-sbuild-52aa155f-4ecf-42fe-9e05-8c4b8446ae04/build/buildd-tabix_0.2.4-1-mipsel-M1XQcD
+Start Time: 20110412-1803
+Get:1 http://incoming.debian.org unstable InRelease [151 kB]
+Get:2 http://mirror.ayous.org unstable InRelease [151 kB]
+Ign http://mirror.ayous.org unstable/contrib TranslationIndex
+Get:3 http://mirror.ayous.org unstable/main TranslationIndex [2264 B]
Ign http://incoming.debian.org InRelease
-Hit http://incoming.debian.org Release.gpg
-Hit http://incoming.debian.org sid/main Sources
-Hit http://incoming.debian.org sid/contrib Sources
-Hit http://incoming.debian.org sid/main mipsel Packages
-Hit http://incoming.debian.org sid/contrib mipsel Packages
-Ign http://incoming.debian.org sid/contrib TranslationIndex
-Hit http://incoming.debian.org sid/main TranslationIndex
-Hit http://incoming.debian.org Release
-Hit http://incoming.debian.org Sources
-Hit http://incoming.debian.org Packages
-Ign http://incoming.debian.org sid/contrib Translation-en
+Ign http://incoming.debian.org unstable/contrib TranslationIndex
+Get:4 http://mirror.ayous.org unstable/main Sources [6613 kB]
+Get:5 http://incoming.debian.org unstable/main TranslationIndex [2264 B]
+Get:6 http://incoming.debian.org Release.gpg [836 B]
+Get:7 http://incoming.debian.org unstable/main Sources [6613 kB]
+Get:8 http://mirror.ayous.org unstable/contrib Sources [57.0 kB]
+Get:9 http://mirror.ayous.org unstable/non-free Sources [116 kB]
+Get:10 http://mirror.ayous.org unstable/main mipsel Packages [9133 kB]
+Get:11 http://incoming.debian.org unstable/contrib Sources [57.0 kB]
+Get:12 http://incoming.debian.org unstable/non-free Sources [116 kB]
+Get:13 http://incoming.debian.org unstable/main mipsel Packages [9133 kB]
+Get:14 http://mirror.ayous.org unstable/contrib mipsel Packages [63.6 kB]
+Ign http://mirror.ayous.org unstable/contrib Translation-en
+Get:15 http://incoming.debian.org unstable/contrib mipsel Packages [63.6 kB]
+Get:16 http://incoming.debian.org Release [1604 B]
+Get:17 http://incoming.debian.org Sources [51.8 kB]
+Get:18 http://incoming.debian.org Packages [1050 kB]
+Ign http://incoming.debian.org unstable/contrib Translation-en
Ign http://incoming.debian.org Translation-en
+Fetched 33.4 MB in 48s (689 kB/s)
Reading package lists...
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -80,11 +72,11 @@ Building dependency tree...
Reading state information...
NOTICE: 'tabix' packaging is maintained in the 'Git' version control system at:
git://git.debian.org/debian-med/tabix.git
-Need to get 50.4 kB of source archives.
-Get:1 http://debian.oregonstate.edu/debian/ sid/main tabix 0.2.3-1 (dsc) [1882 B]
-Get:2 http://debian.oregonstate.edu/debian/ sid/main tabix 0.2.3-1 (tar) [46.4 kB]
-Get:3 http://debian.oregonstate.edu/debian/ sid/main tabix 0.2.3-1 (diff) [2130 B]
-Fetched 50.4 kB in 0s (880 kB/s)
+Need to get 58.4 kB of source archives.
+Get:1 http://mirror.ayous.org/debian/ unstable/main tabix 0.2.4-1 (dsc) [1882 B]
+Get:2 http://mirror.ayous.org/debian/ unstable/main tabix 0.2.4-1 (tar) [54.2 kB]
+Get:3 http://mirror.ayous.org/debian/ unstable/main tabix 0.2.4-1 (diff) [2322 B]
+Fetched 58.4 kB in 0s (115 kB/s)
Download complete and in download only mode
Check arch
@@ -99,36 +91,129 @@ Build-Depends: cdbs, debhelper (>= 8), zlib1g-dev
Checking for already installed source dependencies...
cdbs: missing
-debhelper: already installed (8.1.2 >= 8 is satisfied)
-zlib1g-dev: already installed (1:1.2.3.4.dfsg-3)
+debhelper: missing
+Using default version 8.1.3
+zlib1g-dev: missing
Checking for source dependency conflicts...
-Installing positive dependencies: cdbs
+Installing positive dependencies: cdbs debhelper zlib1g-dev
Reading package lists...
Building dependency tree...
Reading state information...
-The following packages were automatically installed and are no longer required:
- libpopt0 pkg-config udev zlib1g-dev
-Use 'apt-get autoremove' to remove them.
+The following extra packages will be installed:
+ bsdmainutils dpkg-dev file gettext gettext-base groff-base html2text
+ intltool-debian libcroco3 libdpkg-perl libglib2.0-0 libmagic1 libpcre3
+ libpipeline1 libunistring0 libxml2 man-db po-debconf
Suggested packages:
- devscripts doc-base
+ wamerican wordlist whois vacation devscripts doc-base dh-make debian-keyring
+ gettext-doc groff less www-browser libmail-box-perl
Recommended packages:
- autotools-dev
+ autotools-dev libalgorithm-merge-perl curl wget lynx-cur autopoint
+ libglib2.0-data shared-mime-info xml-core libmail-sendmail-perl
The following NEW packages will be installed:
- cdbs
+ bsdmainutils cdbs debhelper file gettext gettext-base groff-base html2text
+ intltool-debian libcroco3 libglib2.0-0 libmagic1 libpcre3 libpipeline1
+ libunistring0 libxml2 man-db po-debconf zlib1g-dev
+The following packages will be upgraded:
+ dpkg-dev libdpkg-perl
+2 upgraded, 19 newly installed, 0 to remove and 31 not upgraded.
+Need to get 12.0 MB of archives.
+After this operation, 31.2 MB of additional disk space will be used.
+Get:1 http://mirror.ayous.org/debian/ unstable/main bsdmainutils mipsel 8.2.2 [207 kB]
+Get:2 http://mirror.ayous.org/debian/ unstable/main groff-base mipsel 1.21-5 [1154 kB]
+Get:3 http://mirror.ayous.org/debian/ unstable/main libpipeline1 mipsel 1.2.0-1 [35.1 kB]
+Get:4 http://mirror.ayous.org/debian/ unstable/main man-db mipsel 2.6.0.1-1 [995 kB]
+Get:5 http://mirror.ayous.org/debian/ unstable/main libmagic1 mipsel 5.04-5 [238 kB]
+Get:6 http://mirror.ayous.org/debian/ unstable/main file mipsel 5.04-5 [49.5 kB]
+Get:7 http://mirror.ayous.org/debian/ unstable/main gettext-base mipsel 0.18.1.1-3 [152 kB]
+Get:8 http://mirror.ayous.org/debian/ unstable/main libpcre3 mipsel 8.12-3 [262 kB]
+Get:9 http://mirror.ayous.org/debian/ unstable/main libxml2 mipsel 2.7.8.dfsg-2 [833 kB]
+Get:10 http://mirror.ayous.org/debian/ unstable/main dpkg-dev mipsel 1.16.0.1 [871 kB]
+Get:11 http://mirror.ayous.org/debian/ unstable/main libdpkg-perl mipsel 1.16.0.1 [748 kB]
+Get:12 http://mirror.ayous.org/debian/ unstable/main html2text mipsel 1.3.2a-15 [103 kB]
+Get:13 http://mirror.ayous.org/debian/ unstable/main libglib2.0-0 mipsel 2.28.4-1 [1499 kB]
+Get:14 http://mirror.ayous.org/debian/ unstable/main libcroco3 mipsel 0.6.2-1 [110 kB]
+Get:15 http://mirror.ayous.org/debian/ unstable/main libunistring0 mipsel 0.9.3-3 [411 kB]
+Get:16 http://mirror.ayous.org/debian/ unstable/main gettext mipsel 0.18.1.1-3 [2023 kB]
+Get:17 http://mirror.ayous.org/debian/ unstable/main intltool-debian mipsel 0.35.0+20060710.1 [30.8 kB]
+Get:18 http://mirror.ayous.org/debian/ unstable/main po-debconf mipsel 1.0.16+nmu1 [223 kB]
+Get:19 http://mirror.ayous.org/debian/ unstable/main debhelper mipsel 8.1.3 [554 kB]
+Get:20 http://mirror.ayous.org/debian/ unstable/main cdbs mipsel 0.4.92 [1268 kB]
+Get:21 http://mirror.ayous.org/debian/ unstable/main zlib1g-dev mipsel 1:1.2.3.4.dfsg-3 [192 kB]
debconf: delaying package configuration, since apt-utils is not installed
-0 upgraded, 1 newly installed, 0 to remove and 6 not upgraded.
-Need to get 0 B/1268 kB of archives.
-After this operation, 1757 kB of additional disk space will be used.
+Fetched 12.0 MB in 2s (4895 kB/s)
+Selecting previously deselected package bsdmainutils.
+(Reading database ... 10124 files and directories currently installed.)
+Unpacking bsdmainutils (from .../bsdmainutils_8.2.2_mipsel.deb) ...
+Selecting previously deselected package groff-base.
+Unpacking groff-base (from .../groff-base_1.21-5_mipsel.deb) ...
+Selecting previously deselected package libpipeline1.
+Unpacking libpipeline1 (from .../libpipeline1_1.2.0-1_mipsel.deb) ...
+Selecting previously deselected package man-db.
+Unpacking man-db (from .../man-db_2.6.0.1-1_mipsel.deb) ...
+Selecting previously deselected package libmagic1.
+Unpacking libmagic1 (from .../libmagic1_5.04-5_mipsel.deb) ...
+Selecting previously deselected package file.
+Unpacking file (from .../file_5.04-5_mipsel.deb) ...
+Selecting previously deselected package gettext-base.
+Unpacking gettext-base (from .../gettext-base_0.18.1.1-3_mipsel.deb) ...
+Selecting previously deselected package libpcre3.
+Unpacking libpcre3 (from .../libpcre3_8.12-3_mipsel.deb) ...
+Selecting previously deselected package libxml2.
+Unpacking libxml2 (from .../libxml2_2.7.8.dfsg-2_mipsel.deb) ...
+Preparing to replace dpkg-dev 1.15.8.10 (using .../dpkg-dev_1.16.0.1_mipsel.deb) ...
+Unpacking replacement dpkg-dev ...
+Preparing to replace libdpkg-perl 1.15.8.10 (using .../libdpkg-perl_1.16.0.1_mipsel.deb) ...
+Unpacking replacement libdpkg-perl ...
+Selecting previously deselected package html2text.
+Unpacking html2text (from .../html2text_1.3.2a-15_mipsel.deb) ...
+Selecting previously deselected package libglib2.0-0.
+Unpacking libglib2.0-0 (from .../libglib2.0-0_2.28.4-1_mipsel.deb) ...
+Selecting previously deselected package libcroco3.
+Unpacking libcroco3 (from .../libcroco3_0.6.2-1_mipsel.deb) ...
+Selecting previously deselected package libunistring0.
+Unpacking libunistring0 (from .../libunistring0_0.9.3-3_mipsel.deb) ...
+Selecting previously deselected package gettext.
+Unpacking gettext (from .../gettext_0.18.1.1-3_mipsel.deb) ...
+Selecting previously deselected package intltool-debian.
+Unpacking intltool-debian (from .../intltool-debian_0.35.0+20060710.1_mipsel.deb) ...
+Selecting previously deselected package po-debconf.
+Unpacking po-debconf (from .../po-debconf_1.0.16+nmu1_mipsel.deb) ...
+Selecting previously deselected package debhelper.
+Unpacking debhelper (from .../debhelper_8.1.3_mipsel.deb) ...
Selecting previously deselected package cdbs.
-(Reading database ... 11911 files and directories currently installed.)
-Unpacking cdbs (from .../archives/cdbs_0.4.92_all.deb) ...
-Processing triggers for man-db ...
+Unpacking cdbs (from .../cdbs_0.4.92_mipsel.deb) ...
+Selecting previously deselected package zlib1g-dev.
+Unpacking zlib1g-dev (from .../zlib1g-dev_1%3a1.2.3.4.dfsg-3_mipsel.deb) ...
+Setting up bsdmainutils (8.2.2) ...
+update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode.
+update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode.
+Setting up groff-base (1.21-5) ...
+Setting up libpipeline1 (1.2.0-1) ...
+Setting up man-db (2.6.0.1-1) ...
+Building database of manual pages ...
+Setting up libmagic1 (5.04-5) ...
+Setting up file (5.04-5) ...
+Setting up gettext-base (0.18.1.1-3) ...
+Setting up libpcre3 (8.12-3) ...
+Setting up libxml2 (2.7.8.dfsg-2) ...
+Setting up libdpkg-perl (1.16.0.1) ...
+Setting up dpkg-dev (1.16.0.1) ...
+Setting up html2text (1.3.2a-15) ...
+Setting up libglib2.0-0 (2.28.4-1) ...
+No schema files found: doing nothing.
+Setting up libcroco3 (0.6.2-1) ...
+Setting up libunistring0 (0.9.3-3) ...
+Setting up gettext (0.18.1.1-3) ...
+Setting up intltool-debian (0.35.0+20060710.1) ...
+Setting up po-debconf (1.0.16+nmu1) ...
+Setting up debhelper (8.1.3) ...
Setting up cdbs (0.4.92) ...
+Setting up zlib1g-dev (1:1.2.3.4.dfsg-3) ...
Removing negative dependencies:
Checking correctness of source dependencies...
-Kernel: Linux 2.6.32-5-sb1-bcm91250a mipsel (mips64)
-Toolchain package versions: libc6-dev_2.11.2-11 dpkg-dev_1.15.8.10 linux-libc-dev_2.6.37-2 gcc-4.4_4.4.5-13 g++-4.4_4.4.5-13 binutils_2.21.0.20110302-1 libstdc++6-4.4-dev_4.4.5-13 libstdc++6_4.5.2-6
-Package versions: apt_0.8.12 base-files_6.1 base-passwd_3.5.22 bash_4.1-3 binutils_2.21.0.20110302-1 bsdmainutils_8.2.2 bsdutils_1:2.17.2-9.1 build-essential_11.5 bzip2_1.0.5-6 cdbs_0.4.92 coreutils_8.5-1 cpio_2.11-7 cpp_4:4.4.5-4 cpp-4.4_4.4.5-13 dash_0.5.5.1-7.4 debconf_1.5.38 debconf-i18n_1.5.38 debhelper_8.1.2 debian-archive-keyring_2010.08.28 debianutils_3.4.4 diffutils_1:3.0-1 dmsetup_2:1.02.63-2 dpkg_1.15.8.10 dpkg-dev_1.15.8.10 e2fslibs_1.41.12-2 e2fsprogs_1.41.12-2 fakeroot_1.14.5-2 file_5.04-5 findutils_4.4.2-1+b1 g++_4:4.4.5-4 g++-4.4_4.4.5-13 gcc_4:4.4.5-4 gcc-4.3-base_4.3.5-4 gcc-4.4_4.4.5-13 gcc-4.4-base_4.4.5-13 gcc-4.5-base_4.5.2-6 gettext_0.18.1.1-3 gettext-base_0.18.1.1-3 gnupg_1.4.11-3 gpgv_1.4.11-3 grep_2.6.3-3 groff-base_1.21-4 gzip_1.3.12-9 hostname_3.06 html2text_1.3.2a-15 initscripts_2.88dsf-13.1 insserv_1.14.0-2 intltool-debian_0.35.0+20060710.1 libacl1_2.2.49-4 libattr1_1:2.4.44-2 libblkid1_2.17.2-9.1 libbz2-1.0_1.0.5-6 libc-bin_2.11.2-11 libc-dev-bin_2.11.2-11 libc6_2.11.2-11 libc6-dev_2.11.2-11 libcomerr2_1.41.12-2 libcroco3_0.6.2-1 libdb4.7_4.7.25-12 libdb4.8_4.8.30-5 libdevmapper1.02.1_2:1.02.63-2 libdpkg-perl_1.15.8.10 libgcc1_1:4.5.2-6 libgdbm3_1.8.3-9 libglib2.0-0_2.28.2-1 libgmp10_2:5.0.1+dfsg-6 libgmp3c2_2:4.3.2+dfsg-1 libgomp1_4.5.2-6 liblocale-gettext-perl_1.05-6 liblzma1_4.999.9beta+20091116-1 liblzma2_5.0.0-2 libmagic1_5.04-5 libmpfr1ldbl_2.4.2-3 libmpfr4_3.0.0-9 libncurses5_5.8+20110307-1 libncursesw5_5.8+20110307-1 libpam-modules_1.1.2-2 libpam-runtime_1.1.2-2 libpam0g_1.1.2-2 libpcre3_8.12-3 libpipeline1_1.1.0-1 libpopt0_1.16-1 libreadline6_6.1-3 libselinux1_2.0.96-1 libsepol1_2.0.42-1 libslang2_2.2.2-4 libss2_1.41.12-2 libstdc++6_4.5.2-6 libstdc++6-4.4-dev_4.4.5-13 libtext-charwidth-perl_0.04-6 libtext-iconv-perl_1.7-2 libtext-wrapi18n-perl_0.06-7 libtimedate-perl_1.2000-1 libudev0_166-1 libunistring0_0.9.3-3 libusb-0.1-4_2:0.1.12-17 libuuid1_2.17.2-9.1 libxml2_2.7.8.dfsg-2 linux-libc-dev_2.6.37-2 login_1:4.1.4.2+svn3283-3 lsb-base_3.2-27 lzma_4.43-14 make_3.81-8 man-db_2.5.9-4 mawk_1.3.3-15 mount_2.17.2-9.1 ncurses-base_5.8+20110307-1 ncurses-bin_5.8+20110307-1 passwd_1:4.1.4.2+svn3283-3 patch_2.6.1-1 perl_5.10.1-17 perl-base_5.10.1-17 perl-modules_5.10.1-17 pkg-config_0.25-1.1 po-debconf_1.0.16+nmu1 procps_1:3.2.8-10 readline-common_6.1-3 sed_4.2.1-9 sensible-utils_0.0.6 sysv-rc_2.88dsf-13.1 sysvinit_2.88dsf-13.1 sysvinit-utils_2.88dsf-13.1 tar_1.25-3 tzdata_2011d-1 udev_166-1 util-linux_2.17.2-9.1 xz-utils_5.0.0-2 zlib1g_1:1.2.3.4.dfsg-3 zlib1g-dev_1:1.2.3.4.dfsg-3
+Kernel: Linux 2.6.33-rc7 mipsel (mips64)
+Toolchain package versions: libc6-dev_2.11.2-11 dpkg-dev_1.16.0.1 linux-libc-dev_2.6.37-2 gcc-4.4_4.4.5-13 g++-4.4_4.4.5-13 binutils_2.21.0.20110302-1 libstdc++6-4.4-dev_4.4.5-13 libstdc++6_4.5.2-4
+Package versions: apt_0.8.12 base-files_6.1 base-passwd_3.5.22 bash_4.1-3 binutils_2.21.0.20110302-1 bsdmainutils_8.2.2 bsdutils_1:2.17.2-9.1 build-essential_11.5 bzip2_1.0.5-6 cdbs_0.4.92 coreutils_8.5-1 cpp_4:4.4.5-4 cpp-4.4_4.4.5-13 dash_0.5.5.1-7.4 debconf_1.5.38 debconf-english_1.5.38 debfoster_2.7-1.1 debhelper_8.1.3 debian-archive-keyring_2010.08.28 debianutils_3.4.4 diffutils_1:3.0-1 dpkg_1.15.8.10 dpkg-dev_1.16.0.1 e2fslibs_1.41.12-2 e2fsprogs_1.41.12-2 fakeroot_1.14.5-2 file_5.04-5 findutils_4.4.2-1+b1 g++_4:4.4.5-4 g++-4.4_4.4.5-13 gcc_4:4.4.5-4 gcc-4.4_4.4.5-13 gcc-4.4-base_4.4.5-13 gcc-4.5-base_4.5.2-4 gettext_0.18.1.1-3 gettext-base_0.18.1.1-3 gnupg_1.4.11-3 gpgv_1.4.11-3 grep_2.6.3-3 groff-base_1.21-5 gzip_1.3.12-9 hostname_3.06 html2text_1.3.2a-15 initscripts_2.88dsf-13.1 insserv_1.14.0-2 intltool-debian_0.35.0+20060710.1 libacl1_2.2.49-4 libattr1_1:2.4.44-2 libblkid1_2.17.2-9.1 libbz2-1.0_1.0.5-6 libc-bin_2.11.2-11 libc-dev-bin_2.11.2-11 libc6_2.11.2-11 libc6-dev_2.11.2-11 libcomerr2_1.41.12-2 libcroco3_0.6.2-1 libdb4.7_4.7.25-12 libdb4.8_4.8.30-5 libdpkg-perl_1.16.0.1 libgc1c2_1:7.1-7 libgcc1_1:4.5.2-4 libgdbm3_1.8.3-9 libglib2.0-0_2.28.4-1 libgmp10_2:5.0.1+dfsg-6 libgmp3c2_2:4.3.2+dfsg-1 libgomp1_4.5.2-4 liblocale-gettext-perl_1.05-6 liblzma2_5.0.0-2 libmagic1_5.04-5 libmpfr1ldbl_2.4.2-3 libmpfr4_3.0.0-9 libncurses5_5.8+20110307-1 libpam-modules_1.1.2-2 libpam-runtime_1.1.2-2 libpam0g_1.1.2-2 libpcre3_8.12-3 libpipeline1_1.2.0-1 libreadline6_6.1-3 libselinux1_2.0.96-1 libsepol1_2.0.42-1 libslang2_2.2.2-4 libss2_1.41.12-2 libstdc++6_4.5.2-4 libstdc++6-4.4-dev_4.4.5-13 libtext-charwidth-perl_0.04-6 libtext-iconv-perl_1.7-2 libtext-wrapi18n-perl_0.06-7 libtimedate-perl_1.2000-1 libunistring0_0.9.3-3 libusb-0.1-4_2:0.1.12-17 libuuid1_2.17.2-9.1 libxml2_2.7.8.dfsg-2 linux-libc-dev_2.6.37-2 login_1:4.1.4.2+svn3283-3 lsb-base_3.2-27 make_3.81-8 man-db_2.6.0.1-1 mawk_1.3.3-15 mount_2.17.2-9.1 ncurses-base_5.8+20110307-1 ncurses-bin_5.8+20110307-1 passwd_1:4.1.4.2+svn3283-3 patch_2.6.1-1 perl_5.10.1-17 perl-base_5.10.1-17 perl-modules_5.10.1-17 po-debconf_1.0.16+nmu1 readline-common_6.1-3 sed_4.2.1-9 sensible-utils_0.0.6 sudo_1.7.4p6-1 sysv-rc_2.88dsf-13.1 sysvinit_2.88dsf-13.1 sysvinit-utils_2.88dsf-13.1 tar_1.25-3 tzdata_2011c-1 util-linux_2.17.2-9.1 xz-utils_5.0.0-2 zlib1g_1:1.2.3.4.dfsg-3 zlib1g-dev_1:1.2.3.4.dfsg-3
┌──────────────────────────────────────────────────────────────────────────────┐
│ Build │
@@ -140,12 +225,12 @@ Unpack source
dpkg-source: warning: -sn is not a valid option for Dpkg::Source::Package::V3::quilt
gpgv: keyblock resource `/home/buildd/.gnupg/trustedkeys.gpg': file open error
-gpgv: Signature made Wed Jan 19 13:19:58 2011 UTC using RSA key ID 2295D502
+gpgv: Signature made Tue Apr 12 08:22:29 2011 UTC using RSA key ID 2295D502
gpgv: Can't check signature: public key not found
-dpkg-source: warning: failed to verify signature on ./tabix_0.2.3-1.dsc
-dpkg-source: info: extracting tabix in tabix-0.2.3
-dpkg-source: info: unpacking tabix_0.2.3.orig.tar.bz2
-dpkg-source: info: unpacking tabix_0.2.3-1.debian.tar.gz
+dpkg-source: warning: failed to verify signature on ./tabix_0.2.4-1.dsc
+dpkg-source: info: extracting tabix in tabix-0.2.4
+dpkg-source: info: unpacking tabix_0.2.4.orig.tar.bz2
+dpkg-source: info: unpacking tabix_0.2.4-1.debian.tar.gz
Check disc space
────────────────
@@ -160,38 +245,39 @@ dpkg-buildpackage: export CXXFLAGS from dpkg-buildflags (origin: vendor): -g -O2
dpkg-buildpackage: export FFLAGS from dpkg-buildflags (origin: vendor): -g -O2
dpkg-buildpackage: export LDFLAGS from dpkg-buildflags (origin: vendor):
dpkg-buildpackage: source package tabix
-dpkg-buildpackage: source version 0.2.3-1
- dpkg-source --before-build tabix-0.2.3
+dpkg-buildpackage: source version 0.2.4-1
+ dpkg-source --before-build tabix-0.2.4
dpkg-buildpackage: host architecture mipsel
/usr/bin/fakeroot debian/rules clean
test -x debian/rules
dh_testroot
rm -f debian/stamp-makefile-build debian/stamp-makefile-install
/usr/bin/make -C . CFLAGS="-g -O2 -g -O2" CXXFLAGS="-g -O2 -g -O2" CPPFLAGS="" LDFLAGS="" -k clean
-make[1]: Entering directory `/build/buildd-tabix_0.2.3-1-mipsel-Aop1CG/tabix-0.2.3'
-make[2]: Entering directory `/build/buildd-tabix_0.2.3-1-mipsel-Aop1CG/tabix-0.2.3'
+make[1]: Entering directory `/build/buildd-tabix_0.2.4-1-mipsel-M1XQcD/tabix-0.2.4'
+make[2]: Entering directory `/build/buildd-tabix_0.2.4-1-mipsel-M1XQcD/tabix-0.2.4'
rm -fr gmon.out *.o a.out *.dSYM tabix bgzip *~ *.a tabix.aux tabix.log tabix.pdf *.class libtabix.*.dylib libtabix.so*
-make[2]: Leaving directory `/build/buildd-tabix_0.2.3-1-mipsel-Aop1CG/tabix-0.2.3'
-make[1]: Leaving directory `/build/buildd-tabix_0.2.3-1-mipsel-Aop1CG/tabix-0.2.3'
+make[2]: Leaving directory `/build/buildd-tabix_0.2.4-1-mipsel-M1XQcD/tabix-0.2.4'
+make[1]: Leaving directory `/build/buildd-tabix_0.2.4-1-mipsel-M1XQcD/tabix-0.2.4'
dh_clean
debian/rules build
test -x debian/rules
mkdir -p "."
/usr/share/cdbs/1/rules/buildcore.mk:109: WARNING: DEB_COMPRESS_EXCLUDE is a deprecated variable
/usr/bin/make -C . CFLAGS="-g -O2 -g -O2" CXXFLAGS="-g -O2 -g -O2" CPPFLAGS="" LDFLAGS=""
-make[1]: Entering directory `/build/buildd-tabix_0.2.3-1-mipsel-Aop1CG/tabix-0.2.3'
-make[2]: Entering directory `/build/buildd-tabix_0.2.3-1-mipsel-Aop1CG/tabix-0.2.3'
+make[1]: Entering directory `/build/buildd-tabix_0.2.4-1-mipsel-M1XQcD/tabix-0.2.4'
+make[2]: Entering directory `/build/buildd-tabix_0.2.4-1-mipsel-M1XQcD/tabix-0.2.4'
gcc -c -g -O2 -g -O2 -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE bgzf.c -o bgzf.o
gcc -c -g -O2 -g -O2 -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE kstring.c -o kstring.o
gcc -c -g -O2 -g -O2 -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE knetfile.c -o knetfile.o
gcc -c -g -O2 -g -O2 -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE index.c -o index.o
-ar -cru libtabix.a bgzf.o kstring.o knetfile.o index.o
+gcc -c -g -O2 -g -O2 -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE bedidx.c -o bedidx.o
+ar -cru libtabix.a bgzf.o kstring.o knetfile.o index.o bedidx.o
gcc -c -g -O2 -g -O2 -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE main.c -o main.o
gcc -g -O2 -g -O2 -o tabix main.o -lm -lz -L. -ltabix
gcc -c -g -O2 -g -O2 -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE bgzip.c -o bgzip.o
gcc -g -O2 -g -O2 -o bgzip bgzip.o bgzf.o knetfile.o -lz
-make[2]: Leaving directory `/build/buildd-tabix_0.2.3-1-mipsel-Aop1CG/tabix-0.2.3'
-make[1]: Leaving directory `/build/buildd-tabix_0.2.3-1-mipsel-Aop1CG/tabix-0.2.3'
+make[2]: Leaving directory `/build/buildd-tabix_0.2.4-1-mipsel-M1XQcD/tabix-0.2.4'
+make[1]: Leaving directory `/build/buildd-tabix_0.2.4-1-mipsel-M1XQcD/tabix-0.2.4'
touch debian/stamp-makefile-build
DEB_MAKE_CHECK_TARGET unset, not running checks
/usr/bin/fakeroot debian/rules binary-arch
@@ -236,58 +322,59 @@ dpkg-shlibdeps: warning: dependency on libm.so.6 could be avoided if "debian/tab
dh_gencontrol -ptabix
dh_md5sums -ptabix
dh_builddeb -ptabix
-dpkg-deb: building package `tabix' in `../tabix_0.2.3-1_mipsel.deb'.
- dpkg-genchanges -B -mmipsel Build Daemon (mayer) <buildd_mips-mayer at buildd.debian.org> >../tabix_0.2.3-1_mipsel.changes
+dpkg-deb: building package `tabix' in `../tabix_0.2.4-1_mipsel.deb'.
+ dpkg-genchanges -B -mmipsel Build Daemon (monteverdi) <buildd_mipsel-monteverdi at buildd.debian.org> >../tabix_0.2.4-1_mipsel.changes
dpkg-genchanges: arch-specific upload - not including arch-independent packages
dpkg-genchanges: binary-only upload - not including any source code
- dpkg-source --after-build tabix-0.2.3
+ dpkg-source --after-build tabix-0.2.4
dpkg-buildpackage: binary only upload (no source included)
────────────────────────────────────────────────────────────────────────────────
-Build finished at 20110317-1130
+Build finished at 20110412-1806
-tabix_0.2.3-1_mipsel.changes:
+tabix_0.2.4-1_mipsel.changes:
Format: 1.8
-Date: Wed, 19 Jan 2011 22:16:39 +0900
+Date: Tue, 12 Apr 2011 17:15:33 +0900
Source: tabix
Binary: tabix
Architecture: mipsel
-Version: 0.2.3-1
+Version: 0.2.4-1
Distribution: sid
Urgency: low
-Maintainer: mipsel Build Daemon (mayer) <buildd_mips-mayer at buildd.debian.org>
+Maintainer: mipsel Build Daemon (monteverdi) <buildd_mipsel-monteverdi at buildd.debian.org>
Changed-By: Charles Plessy <plessy at debian.org>
Description:
tabix - generic indexer for TAB-delimited genome position files
-Closes: 606446
Changes:
- tabix (0.2.3-1) unstable; urgency=low
+ tabix (0.2.4-1) unstable; urgency=low
.
- * Initial release (Closes: #606446)
+ * New upstream release.
+ * Incremented Standards-Version to reflect conformance with Policy 3.9.2
+ (debian/control).
Checksums-Sha1:
- ff4924b5ea517b138c7f79af0f126506fdb2a15e 55022 tabix_0.2.3-1_mipsel.deb
+ 1c95d4c5e4648c65d2e2040524a4dd3e3695a053 60584 tabix_0.2.4-1_mipsel.deb
Checksums-Sha256:
- bb9a01e489e29083a4d22550ea25dd54676b91a8732c8660ebad9d2e99008f03 55022 tabix_0.2.3-1_mipsel.deb
+ 8ab1a6c9f35869a690ef29a61c98a7fbab01b39f78387aaf761729ff4a1d625b 60584 tabix_0.2.4-1_mipsel.deb
Files:
- eae2eeb50bc85220f3ab6f7c1835427c 55022 science optional tabix_0.2.3-1_mipsel.deb
+ 8ef42dec146f1a59539fb5fb3b270b15 60584 science optional tabix_0.2.4-1_mipsel.deb
┌──────────────────────────────────────────────────────────────────────────────┐
│ Package contents │
└──────────────────────────────────────────────────────────────────────────────┘
-tabix_0.2.3-1_mipsel.deb
+tabix_0.2.4-1_mipsel.deb
────────────────────────
new debian package, version 2.0.
- size 55022 bytes: control archive= 960 bytes.
- 779 bytes, 16 lines control
+ size 60584 bytes: control archive= 964 bytes.
+ 786 bytes, 16 lines control
587 bytes, 9 lines md5sums
Package: tabix
- Version: 0.2.3-1
+ Version: 0.2.4-1
Architecture: mipsel
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
- Installed-Size: 168
- Depends: libc6 (>= 2.7), zlib1g (>= 1:1.1.4)
+ Installed-Size: 184
+ Depends: libc6 (>= 2.7), zlib1g (>= 1:1.2.3.3.dfsg)
Section: science
Priority: optional
Homepage: http://samtools.sourceforge.net/tabix.shtml
@@ -299,25 +386,25 @@ tabix_0.2.3-1_mipsel.deb
chromosomal coordinates. Fast data retrieval also works over network if an URI
is given as a file name.
-drwxr-xr-x root/root 0 2011-03-17 11:30 ./
-drwxr-xr-x root/root 0 2011-03-17 11:30 ./usr/
-drwxr-xr-x root/root 0 2011-03-17 11:30 ./usr/share/
-drwxr-xr-x root/root 0 2011-03-17 11:30 ./usr/share/doc/
-drwxr-xr-x root/root 0 2011-03-17 11:30 ./usr/share/doc/tabix/
--rw-r--r-- root/root 1346 2011-01-19 13:03 ./usr/share/doc/tabix/copyright
-drwxr-xr-x root/root 0 2011-03-17 11:30 ./usr/share/doc/tabix/examples/
+drwxr-xr-x root/root 0 2011-04-12 18:06 ./
+drwxr-xr-x root/root 0 2011-04-12 18:06 ./usr/
+drwxr-xr-x root/root 0 2011-04-12 18:06 ./usr/share/
+drwxr-xr-x root/root 0 2011-04-12 18:06 ./usr/share/doc/
+drwxr-xr-x root/root 0 2011-04-12 18:06 ./usr/share/doc/tabix/
+-rw-r--r-- root/root 3487 2011-04-10 19:21 ./usr/share/doc/tabix/changelog.gz
+-rw-r--r-- root/root 262 2011-04-12 08:16 ./usr/share/doc/tabix/changelog.Debian.gz
+drwxr-xr-x root/root 0 2011-04-12 18:06 ./usr/share/doc/tabix/examples/
-rw-r--r-- root/root 3778 2010-12-08 17:34 ./usr/share/doc/tabix/examples/example.gtf.gz
--rw-r--r-- root/root 260 2010-12-08 17:34 ./usr/share/doc/tabix/examples/example.gtf.gz.tbi
--rw-r--r-- root/root 2920 2010-12-08 17:38 ./usr/share/doc/tabix/changelog.gz
--rw-r--r-- root/root 944 2010-12-08 17:38 ./usr/share/doc/tabix/NEWS.gz
--rw-r--r-- root/root 154 2011-01-19 13:16 ./usr/share/doc/tabix/changelog.Debian.gz
-drwxr-xr-x root/root 0 2011-03-17 11:30 ./usr/share/man/
-drwxr-xr-x root/root 0 2011-03-17 11:30 ./usr/share/man/man1/
--rw-r--r-- root/root 1716 2011-03-17 11:30 ./usr/share/man/man1/tabix.1.gz
-drwxr-xr-x root/root 0 2011-03-17 11:30 ./usr/bin/
--rwxr-xr-x root/root 67960 2011-03-17 11:30 ./usr/bin/tabix
--rwxr-xr-x root/root 28540 2011-03-17 11:30 ./usr/bin/bgzip
-lrwxrwxrwx root/root 0 2011-03-17 11:30 ./usr/share/man/man1/bgzip.1.gz -> tabix.1.gz
+-rw-r--r-- root/root 259 2011-04-10 19:21 ./usr/share/doc/tabix/examples/example.gtf.gz.tbi
+-rw-r--r-- root/root 1169 2011-04-10 19:21 ./usr/share/doc/tabix/NEWS.gz
+-rw-r--r-- root/root 1473 2011-04-12 07:17 ./usr/share/doc/tabix/copyright
+drwxr-xr-x root/root 0 2011-04-12 18:06 ./usr/share/man/
+drwxr-xr-x root/root 0 2011-04-12 18:06 ./usr/share/man/man1/
+-rw-r--r-- root/root 1834 2011-04-12 18:06 ./usr/share/man/man1/tabix.1.gz
+drwxr-xr-x root/root 0 2011-04-12 18:06 ./usr/bin/
+-rwxr-xr-x root/root 28876 2011-04-12 18:06 ./usr/bin/bgzip
+-rwxr-xr-x root/root 78504 2011-04-12 18:06 ./usr/bin/tabix
+lrwxrwxrwx root/root 0 2011-04-12 18:06 ./usr/share/man/man1/bgzip.1.gz -> tabix.1.gz
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -326,11 +413,9 @@ lrwxrwxrwx root/root 0 2011-03-17 11:30 ./usr/share/man/man1/bgzip.1.gz
Built successfully
────────────────────────────────────────────────────────────────────────────────
-Purging /var/lib/schroot/mount/sid-mipsel-sbuild-3de713e2-9e7b-4cc8-a101-a4cb9772993b/build/buildd-tabix_0.2.3-1-mipsel-Aop1CG
-(Reading database ... 11965 files and directories currently installed.)
-Removing cdbs ...
-Processing triggers for man-db ...
+Purging /var/lib/schroot/mount/sid-mipsel-sbuild-52aa155f-4ecf-42fe-9e05-8c4b8446ae04/build/buildd-tabix_0.2.4-1-mipsel-M1XQcD
+Not removing build depends: cloned chroot in use
────────────────────────────────────────────────────────────────────────────────
-Finished at 20110317-1130
-Build needed 00:01:32, 1240k disc space
+Finished at 20110412-1806
+Build needed 00:03:40, 1396k disc space
diff --git a/powerpc.log b/powerpc.log
index fcb0f6f..764ede1 100644
--- a/powerpc.log
+++ b/powerpc.log
@@ -1,68 +1,69 @@
-From buildd at poulenc.debian.org Wed Mar 16 11:22:13 2011
-Return-path: <buildd at poulenc.debian.org>
-Received: from merikanto.debian.org ([2001:858:2:2:216:35ff:fec4:a49a])
+From buildd at porpora.debian.org Tue Apr 12 09:46:21 2011
+Return-path: <buildd at porpora.debian.org>
+Received: from kokkonen.debian.org ([2001:41b8:202:deb:216:35ff:fec4:6340])
from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
- CN=merikanto.debian.org,
- EMAIL=hostmaster at merikanto.debian.org (verified)
+ CN=kokkonen.debian.org,
+ EMAIL=hostmaster at kokkonen.debian.org (verified)
by grieg.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
- (Exim 4.69) (envelope-from <buildd at poulenc.debian.org>)
- id 1Pzont-0005br-3E
- for logs at buildd.debian.org; Wed, 16 Mar 2011 11:22:13 +0000
-Received: from poulenc.ynic.york.ac.uk ([144.32.168.77]
- helo=poulenc.debian.org)
+ (Exim 4.69) (envelope-from <buildd at porpora.debian.org>)
+ id 1Q9aAv-0003AO-FX
+ for logs at buildd.debian.org; Tue, 12 Apr 2011 09:46:21 +0000
+Received: from porpora.ynic.york.ac.uk ([144.32.168.78]
+ helo=porpora.debian.org)
from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
- CN=poulenc.debian.org, EMAIL=hostmaster at poulenc.debian.org (verified)
- by merikanto.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
- (Exim 4.69) (envelope-from <buildd at poulenc.debian.org>)
- id 1Pzonp-0005dv-Hq; Wed, 16 Mar 2011 11:22:09 +0000
-Received: from buildd by poulenc.debian.org with local (Exim 4.69)
- (envelope-from <buildd at poulenc.debian.org>)
- id 1Pzonp-0006WR-5R; Wed, 16 Mar 2011 11:22:09 +0000
-From: buildd on poulenc <buildd at poulenc.debian.org>
+ CN=porpora.debian.org, EMAIL=hostmaster at porpora.debian.org (verified)
+ by kokkonen.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
+ (Exim 4.69) (envelope-from <buildd at porpora.debian.org>)
+ id 1Q9aAr-0001bq-6a; Tue, 12 Apr 2011 09:46:17 +0000
+Received: from buildd by porpora.debian.org with local (Exim 4.69)
+ (envelope-from <buildd at porpora.debian.org>)
+ id 1Q9aAo-0008NT-FI; Tue, 12 Apr 2011 09:46:14 +0000
+MIME-Version: 1.0
+Content-Transfer-Encoding: binary
+X-Mailer: MIME::Lite 3.021 (F2.76; B3.07_01; Q3.07)
+Date: Tue, 12 Apr 2011 09:46:14 +0000
+From: buildd on porpora <buildd at porpora.debian.org>
To: phil+buildd at philkern.de,logs at buildd.debian.org
-Subject: Log for successful build of tabix_0.2.3-1 on powerpc (dist=sid)
-Content-Type: text/plain; charset=UTF-8
-Content-Transfer-Encoding: 8bit
-Message-Id: <E1Pzonp-0006WR-5R at poulenc.debian.org>
-Date: Wed, 16 Mar 2011 11:22:09 +0000
+Subject: Log for successful build of tabix_0.2.4-1 on powerpc (dist=sid)
+Key-Id: CDFA0A89
+Message-Id: <E1Q9aAo-0008NT-FI at porpora.debian.org>
Delivered-To: logs at buildd.debian.org
-sbuild (Debian sbuild) 0.60.5 (14 Nov 2010) on poulenc.debian.org
+sbuild (Debian sbuild) 0.61.0 (23 Feb 2011) on porpora.debian.org
╔══════════════════════════════════════════════════════════════════════════════╗
-║ tabix 0.2.3-1 (powerpc) 16 Mar 2011 11:20 ║
+║ tabix 0.2.4-1 (powerpc) 12 Apr 2011 09:43 ║
╚══════════════════════════════════════════════════════════════════════════════╝
Package: tabix
-Version: 0.2.3-1
+Version: 0.2.4-1
+Source Version: 0.2.4-1
Architecture: powerpc
-Chroot Build Dir: /var/lib/schroot/mount/sid-powerpc-sbuild-c2254c63-e741-4c92-a4b0-0b57769c914b/build/buildd-tabix_0.2.3-1-powerpc-RfX00f
-Start Time: 20110316-1120
-Get:1 http://ftp.uk.debian.org unstable InRelease [147 kB]
-Get:2 http://incoming.debian.org unstable InRelease [147 kB]
-Get:3 http://ftp.uk.debian.org unstable/main Sources [4205 kB]
+Get:1 http://ftp.uk.debian.org unstable InRelease [151 kB]
+Get:2 http://ftp.uk.debian.org unstable/main Sources [5264 kB]
+Get:3 http://incoming.debian.org unstable InRelease [151 kB]
+Get:4 http://ftp.uk.debian.org unstable/contrib Sources [48.2 kB]
+Get:5 http://ftp.uk.debian.org unstable/non-free Sources [97.4 kB]
+Get:6 http://ftp.uk.debian.org unstable/main powerpc Packages [7060 kB]
Ign http://incoming.debian.org InRelease
-Get:4 http://incoming.debian.org Release.gpg [835 B]
-Get:5 http://ftp.uk.debian.org unstable/contrib Sources [38.8 kB]
-Get:6 http://incoming.debian.org unstable/main Sources [4205 kB]
-Get:7 http://ftp.uk.debian.org unstable/non-free Sources [81.3 kB]
-Get:8 http://ftp.uk.debian.org unstable/main powerpc Packages [6921 kB]
-Get:9 http://ftp.uk.debian.org unstable/contrib powerpc Packages [51.3 kB]
+Get:7 http://incoming.debian.org Release.gpg [836 B]
+Get:8 http://incoming.debian.org unstable/main Sources [5265 kB]
+Get:9 http://ftp.uk.debian.org unstable/contrib powerpc Packages [52.4 kB]
Ign http://ftp.uk.debian.org unstable/contrib TranslationIndex
-Get:10 http://ftp.uk.debian.org unstable/main TranslationIndex [2232 B]
+Get:10 http://ftp.uk.debian.org unstable/main TranslationIndex [2264 B]
Ign http://ftp.uk.debian.org unstable/contrib Translation-en
-Get:11 http://incoming.debian.org unstable/contrib Sources [38.8 kB]
-Get:12 http://incoming.debian.org unstable/non-free Sources [81.3 kB]
-Get:13 http://incoming.debian.org unstable/main powerpc Packages [6921 kB]
-Get:14 http://incoming.debian.org unstable/contrib powerpc Packages [51.3 kB]
+Get:11 http://incoming.debian.org unstable/contrib Sources [48.2 kB]
+Get:12 http://incoming.debian.org unstable/non-free Sources [97.4 kB]
+Get:13 http://incoming.debian.org unstable/main powerpc Packages [7058 kB]
+Get:14 http://incoming.debian.org unstable/contrib powerpc Packages [52.4 kB]
Ign http://incoming.debian.org unstable/contrib TranslationIndex
-Get:15 http://incoming.debian.org unstable/main TranslationIndex [2232 B]
+Get:15 http://incoming.debian.org unstable/main TranslationIndex [2264 B]
Get:16 http://incoming.debian.org Release [1604 B]
-Get:17 http://incoming.debian.org Sources [30.2 kB]
-Get:18 http://incoming.debian.org Packages [416 kB]
+Get:17 http://incoming.debian.org Sources [49.0 kB]
+Get:18 http://incoming.debian.org Packages [775 kB]
Ign http://incoming.debian.org unstable/contrib Translation-en
Ign http://incoming.debian.org Translation-en
-Fetched 23.3 MB in 24s (942 kB/s)
+Fetched 26.2 MB in 26s (994 kB/s)
Reading package lists...
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -83,80 +84,142 @@ Building dependency tree...
Reading state information...
NOTICE: 'tabix' packaging is maintained in the 'Git' version control system at:
git://git.debian.org/debian-med/tabix.git
-Need to get 50.4 kB of source archives.
-Get:1 http://incoming.debian.org/buildd-unstable/ tabix 0.2.3-1 (dsc) [1882 B]
-Get:2 http://incoming.debian.org/buildd-unstable/ tabix 0.2.3-1 (tar) [46.4 kB]
-Get:3 http://incoming.debian.org/buildd-unstable/ tabix 0.2.3-1 (diff) [2130 B]
-Fetched 50.4 kB in 0s (76.5 kB/s)
+Need to get 58.4 kB of source archives.
+Get:1 http://incoming.debian.org/buildd-unstable/ tabix 0.2.4-1 (dsc) [1882 B]
+Get:2 http://incoming.debian.org/buildd-unstable/ tabix 0.2.4-1 (tar) [54.2 kB]
+Get:3 http://incoming.debian.org/buildd-unstable/ tabix 0.2.4-1 (diff) [2322 B]
+Fetched 58.4 kB in 0s (88.8 kB/s)
Download complete and in download only mode
Check arch
──────────
-** Using build dependencies supplied by package:
-Build-Depends: cdbs, debhelper (>= 8), zlib1g-dev
┌──────────────────────────────────────────────────────────────────────────────┐
-│ Install build dependencies (internal resolver) │
+│ Install core build dependencies (internal resolver) │
└──────────────────────────────────────────────────────────────────────────────┘
-Checking for already installed source dependencies...
+Build-Depends: build-essential, fakeroot
+Checking for already installed dependencies...
+build-essential: already installed (11.5)
+fakeroot: already installed (1.15.1-1)
+Checking for dependency conflicts...
+Installing positive dependencies:
+Reading package lists...
+Building dependency tree...
+Reading state information...
+The following packages were automatically installed and are no longer required:
+ libppl7 libppl-c2
+Use 'apt-get autoremove' to remove them.
+0 upgraded, 0 newly installed, 0 to remove and 17 not upgraded.
+Removing negative dependencies:
+Reading package lists...
+Building dependency tree...
+Reading state information...
+The following packages were automatically installed and are no longer required:
+ libppl7 libppl-c2
+Use 'apt-get autoremove' to remove them.
+0 upgraded, 0 newly installed, 0 to remove and 17 not upgraded.
+Checking correctness of dependencies...
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Install tabix build dependencies (internal resolver) │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+Build-Depends: base-files, base-passwd, bash, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, ncurses-base, ncurses-bin, perl-base, sed, login, sysvinit-utils, sysvinit, tar, bsdutils, mount, util-linux, libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), cdbs, debhelper (>= 8), zlib1g-dev
+Checking for already installed dependencies...
+base-files: already installed (6.1)
+base-passwd: already installed (3.5.22)
+bash: already installed (4.1-3)
+coreutils: already installed (8.5-1)
+dash: already installed (0.5.5.1-7.4)
+debianutils: already installed (3.4.4)
+diffutils: already installed (1:3.0-1)
+dpkg: already installed (1.15.8.10)
+e2fsprogs: already installed (1.41.12-2)
+findutils: already installed (4.4.2-1+b1)
+grep: already installed (2.6.3-3)
+gzip: already installed (1.3.12-9)
+hostname: already installed (3.06)
+ncurses-base: already installed (5.8-1)
+ncurses-bin: already installed (5.8-1)
+perl-base: already installed (5.10.1-18)
+sed: already installed (4.2.1-9)
+login: already installed (1:4.1.4.2+svn3283-3)
+sysvinit-utils: already installed (2.88dsf-13.1)
+sysvinit: already installed (2.88dsf-13.1)
+tar: already installed (1.25-3)
+bsdutils: already installed (1:2.17.2-9.1)
+mount: already installed (2.17.2-9.1)
+util-linux: already installed (2.17.2-9.1)
+libc6-dev: already installed (2.11.2-11)
+gcc: already installed (4:4.5.2-4 >= 4:4.4.3 is satisfied)
+g++: already installed (4:4.5.2-4 >= 4:4.4.3 is satisfied)
+make: already installed (3.81-8)
+dpkg-dev: already installed (1.15.8.10 >= 1.13.5 is satisfied)
cdbs: missing
debhelper: missing
-Using default version 8.1.2
+Using default version 8.1.3
zlib1g-dev: missing
-Checking for source dependency conflicts...
+Checking for dependency conflicts...
Installing positive dependencies: cdbs debhelper zlib1g-dev
Reading package lists...
Building dependency tree...
Reading state information...
+The following packages were automatically installed and are no longer required:
+ libppl7 libppl-c2
+Use 'apt-get autoremove' to remove them.
The following extra packages will be installed:
- bsdmainutils file gettext gettext-base groff-base html2text intltool-debian
- libcroco3 libglib2.0-0 libmagic1 libpcre3 libpipeline1 libunistring0 libxml2
- man-db po-debconf
+ bsdmainutils dpkg-dev file gettext gettext-base groff-base html2text
+ intltool-debian libcroco3 libdpkg-perl libglib2.0-0 libmagic1 libpcre3
+ libpipeline1 libunistring0 libxml2 man-db po-debconf
Suggested packages:
- wamerican wordlist whois vacation devscripts doc-base dh-make gettext-doc
- groff less www-browser libmail-box-perl
+ wamerican wordlist whois vacation devscripts doc-base dh-make debian-keyring
+ gettext-doc groff less www-browser libmail-box-perl
Recommended packages:
- autotools-dev curl wget lynx-cur autopoint libglib2.0-data shared-mime-info
- xml-core libmail-sendmail-perl
+ autotools-dev libalgorithm-merge-perl curl wget lynx-cur autopoint
+ libglib2.0-data shared-mime-info xml-core libmail-sendmail-perl
The following NEW packages will be installed:
bsdmainutils cdbs debhelper file gettext gettext-base groff-base html2text
intltool-debian libcroco3 libglib2.0-0 libmagic1 libpcre3 libpipeline1
libunistring0 libxml2 man-db po-debconf zlib1g-dev
-0 upgraded, 19 newly installed, 0 to remove and 18 not upgraded.
-Need to get 10.5 MB of archives.
-After this operation, 30.2 MB of additional disk space will be used.
+The following packages will be upgraded:
+ dpkg-dev libdpkg-perl
+2 upgraded, 19 newly installed, 0 to remove and 15 not upgraded.
+Need to get 12.2 MB of archives.
+After this operation, 30.3 MB of additional disk space will be used.
Get:1 http://ftp.uk.debian.org/debian/ unstable/main bsdmainutils powerpc 8.2.2 [209 kB]
-Get:2 http://ftp.uk.debian.org/debian/ unstable/main groff-base powerpc 1.21-4 [1168 kB]
-Get:3 http://ftp.uk.debian.org/debian/ unstable/main libpipeline1 powerpc 1.1.0-1 [36.9 kB]
-Get:4 http://ftp.uk.debian.org/debian/ unstable/main man-db powerpc 2.5.9-4 [1001 kB]
+Get:2 http://ftp.uk.debian.org/debian/ unstable/main groff-base powerpc 1.21-5 [1189 kB]
+Get:3 http://ftp.uk.debian.org/debian/ unstable/main libpipeline1 powerpc 1.2.0-1 [37.2 kB]
+Get:4 http://ftp.uk.debian.org/debian/ unstable/main man-db powerpc 2.6.0.1-1 [1018 kB]
Get:5 http://ftp.uk.debian.org/debian/ unstable/main libmagic1 powerpc 5.04-5 [241 kB]
Get:6 http://ftp.uk.debian.org/debian/ unstable/main file powerpc 5.04-5 [49.9 kB]
Get:7 http://ftp.uk.debian.org/debian/ unstable/main gettext-base powerpc 0.18.1.1-3 [141 kB]
Get:8 http://ftp.uk.debian.org/debian/ unstable/main libpcre3 powerpc 8.12-3 [258 kB]
Get:9 http://ftp.uk.debian.org/debian/ unstable/main libxml2 powerpc 2.7.8.dfsg-2 [849 kB]
-Get:10 http://ftp.uk.debian.org/debian/ unstable/main html2text powerpc 1.3.2a-15 [105 kB]
-Get:11 http://ftp.uk.debian.org/debian/ unstable/main libglib2.0-0 powerpc 2.28.2-1 [1598 kB]
-Get:12 http://ftp.uk.debian.org/debian/ unstable/main libcroco3 powerpc 0.6.2-1 [128 kB]
-Get:13 http://ftp.uk.debian.org/debian/ unstable/main libunistring0 powerpc 0.9.3-3 [422 kB]
-Get:14 http://ftp.uk.debian.org/debian/ unstable/main gettext powerpc 0.18.1.1-3 [2046 kB]
-Get:15 http://ftp.uk.debian.org/debian/ unstable/main intltool-debian all 0.35.0+20060710.1 [30.8 kB]
-Get:16 http://ftp.uk.debian.org/debian/ unstable/main po-debconf all 1.0.16+nmu1 [223 kB]
-Get:17 http://ftp.uk.debian.org/debian/ unstable/main debhelper all 8.1.2 [553 kB]
-Get:18 http://ftp.uk.debian.org/debian/ unstable/main cdbs all 0.4.92 [1268 kB]
-Get:19 http://ftp.uk.debian.org/debian/ unstable/main zlib1g-dev powerpc 1:1.2.3.4.dfsg-3 [190 kB]
+Get:10 http://ftp.uk.debian.org/debian/ unstable/main dpkg-dev powerpc 1.16.0.1 [871 kB]
+Get:11 http://ftp.uk.debian.org/debian/ unstable/main libdpkg-perl powerpc 1.16.0.1 [748 kB]
+Get:12 http://ftp.uk.debian.org/debian/ unstable/main html2text powerpc 1.3.2a-15 [105 kB]
+Get:13 http://ftp.uk.debian.org/debian/ unstable/main libglib2.0-0 powerpc 2.28.4-1 [1601 kB]
+Get:14 http://ftp.uk.debian.org/debian/ unstable/main libcroco3 powerpc 0.6.2-1 [128 kB]
+Get:15 http://ftp.uk.debian.org/debian/ unstable/main libunistring0 powerpc 0.9.3-3 [422 kB]
+Get:16 http://ftp.uk.debian.org/debian/ unstable/main gettext powerpc 0.18.1.1-3 [2046 kB]
+Get:17 http://ftp.uk.debian.org/debian/ unstable/main intltool-debian powerpc 0.35.0+20060710.1 [30.8 kB]
+Get:18 http://ftp.uk.debian.org/debian/ unstable/main po-debconf powerpc 1.0.16+nmu1 [223 kB]
+Get:19 http://ftp.uk.debian.org/debian/ unstable/main debhelper powerpc 8.1.3 [554 kB]
+Get:20 http://ftp.uk.debian.org/debian/ unstable/main cdbs powerpc 0.4.92 [1268 kB]
+Get:21 http://ftp.uk.debian.org/debian/ unstable/main zlib1g-dev powerpc 1:1.2.3.4.dfsg-3 [190 kB]
debconf: delaying package configuration, since apt-utils is not installed
-Fetched 10.5 MB in 2s (3631 kB/s)
+Fetched 12.2 MB in 2s (5791 kB/s)
Selecting previously deselected package bsdmainutils.
-(Reading database ... 10319 files and directories currently installed.)
+(Reading database ... 10241 files and directories currently installed.)
Unpacking bsdmainutils (from .../bsdmainutils_8.2.2_powerpc.deb) ...
Selecting previously deselected package groff-base.
-Unpacking groff-base (from .../groff-base_1.21-4_powerpc.deb) ...
+Unpacking groff-base (from .../groff-base_1.21-5_powerpc.deb) ...
Selecting previously deselected package libpipeline1.
-Unpacking libpipeline1 (from .../libpipeline1_1.1.0-1_powerpc.deb) ...
+Unpacking libpipeline1 (from .../libpipeline1_1.2.0-1_powerpc.deb) ...
Selecting previously deselected package man-db.
-Unpacking man-db (from .../man-db_2.5.9-4_powerpc.deb) ...
+Unpacking man-db (from .../man-db_2.6.0.1-1_powerpc.deb) ...
Selecting previously deselected package libmagic1.
Unpacking libmagic1 (from .../libmagic1_5.04-5_powerpc.deb) ...
Selecting previously deselected package file.
@@ -167,10 +230,14 @@ Selecting previously deselected package libpcre3.
Unpacking libpcre3 (from .../libpcre3_8.12-3_powerpc.deb) ...
Selecting previously deselected package libxml2.
Unpacking libxml2 (from .../libxml2_2.7.8.dfsg-2_powerpc.deb) ...
+Preparing to replace dpkg-dev 1.15.8.10 (using .../dpkg-dev_1.16.0.1_powerpc.deb) ...
+Unpacking replacement dpkg-dev ...
+Preparing to replace libdpkg-perl 1.15.8.10 (using .../libdpkg-perl_1.16.0.1_powerpc.deb) ...
+Unpacking replacement libdpkg-perl ...
Selecting previously deselected package html2text.
Unpacking html2text (from .../html2text_1.3.2a-15_powerpc.deb) ...
Selecting previously deselected package libglib2.0-0.
-Unpacking libglib2.0-0 (from .../libglib2.0-0_2.28.2-1_powerpc.deb) ...
+Unpacking libglib2.0-0 (from .../libglib2.0-0_2.28.4-1_powerpc.deb) ...
Selecting previously deselected package libcroco3.
Unpacking libcroco3 (from .../libcroco3_0.6.2-1_powerpc.deb) ...
Selecting previously deselected package libunistring0.
@@ -178,43 +245,52 @@ Unpacking libunistring0 (from .../libunistring0_0.9.3-3_powerpc.deb) ...
Selecting previously deselected package gettext.
Unpacking gettext (from .../gettext_0.18.1.1-3_powerpc.deb) ...
Selecting previously deselected package intltool-debian.
-Unpacking intltool-debian (from .../intltool-debian_0.35.0+20060710.1_all.deb) ...
+Unpacking intltool-debian (from .../intltool-debian_0.35.0+20060710.1_powerpc.deb) ...
Selecting previously deselected package po-debconf.
-Unpacking po-debconf (from .../po-debconf_1.0.16+nmu1_all.deb) ...
+Unpacking po-debconf (from .../po-debconf_1.0.16+nmu1_powerpc.deb) ...
Selecting previously deselected package debhelper.
-Unpacking debhelper (from .../debhelper_8.1.2_all.deb) ...
+Unpacking debhelper (from .../debhelper_8.1.3_powerpc.deb) ...
Selecting previously deselected package cdbs.
-Unpacking cdbs (from .../archives/cdbs_0.4.92_all.deb) ...
+Unpacking cdbs (from .../cdbs_0.4.92_powerpc.deb) ...
Selecting previously deselected package zlib1g-dev.
Unpacking zlib1g-dev (from .../zlib1g-dev_1%3a1.2.3.4.dfsg-3_powerpc.deb) ...
Setting up bsdmainutils (8.2.2) ...
update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode.
update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode.
-Setting up groff-base (1.21-4) ...
-Setting up libpipeline1 (1.1.0-1) ...
-Setting up man-db (2.5.9-4) ...
+Setting up groff-base (1.21-5) ...
+Setting up libpipeline1 (1.2.0-1) ...
+Setting up man-db (2.6.0.1-1) ...
Building database of manual pages ...
Setting up libmagic1 (5.04-5) ...
Setting up file (5.04-5) ...
Setting up gettext-base (0.18.1.1-3) ...
Setting up libpcre3 (8.12-3) ...
Setting up libxml2 (2.7.8.dfsg-2) ...
+Setting up libdpkg-perl (1.16.0.1) ...
+Setting up dpkg-dev (1.16.0.1) ...
Setting up html2text (1.3.2a-15) ...
-Setting up libglib2.0-0 (2.28.2-1) ...
+Setting up libglib2.0-0 (2.28.4-1) ...
No schema files found: doing nothing.
Setting up libcroco3 (0.6.2-1) ...
Setting up libunistring0 (0.9.3-3) ...
Setting up gettext (0.18.1.1-3) ...
Setting up intltool-debian (0.35.0+20060710.1) ...
Setting up po-debconf (1.0.16+nmu1) ...
-Setting up debhelper (8.1.2) ...
+Setting up debhelper (8.1.3) ...
Setting up cdbs (0.4.92) ...
Setting up zlib1g-dev (1:1.2.3.4.dfsg-3) ...
Removing negative dependencies:
-Checking correctness of source dependencies...
+Reading package lists...
+Building dependency tree...
+Reading state information...
+The following packages were automatically installed and are no longer required:
+ libppl7 libppl-c2
+Use 'apt-get autoremove' to remove them.
+0 upgraded, 0 newly installed, 0 to remove and 15 not upgraded.
+Checking correctness of dependencies...
Kernel: Linux 2.6.26-2-powerpc64 powerpc (ppc64)
-Toolchain package versions: libc6-dev_2.11.2-11 dpkg-dev_1.15.8.10 linux-libc-dev_2.6.37-2 gcc-4.5_4.5.2-5 g++-4.5_4.5.2-5 binutils_2.21.0.20110302-1 libstdc++6-4.5-dev_4.5.2-5 libstdc++6_4.5.2-5
-Package versions: apt_0.8.11.5 base-files_6.1 base-passwd_3.5.22 bash_4.1-3 binutils_2.21.0.20110302-1 bsdmainutils_8.2.2 bsdutils_1:2.17.2-9.1 build-essential_11.5 bzip2_1.0.5-6 cdbs_0.4.92 coreutils_8.5-1 cpp_4:4.5.2-2 cpp-4.5_4.5.2-5 dash_0.5.5.1-7.4 debconf_1.5.38 debconf-i18n_1.5.38 debfoster_2.7-1.1 debhelper_8.1.2 debian-archive-keyring_2010.08.28 debianutils_3.4.4 diffutils_1:3.0-1 dpkg_1.15.8.10 dpkg-dev_1.15.8.10 e2fslibs_1.41.12-2 e2fsprogs_1.41.12-2 fakeroot_1.14.5-2 file_5.04-5 findutils_4.4.2-1+b1 g++_4:4.5.2-2 g++-4.5_4.5.2-5 gcc_4:4.5.2-2 gcc-4.4-base_4.4.5-13 gcc-4.5_4.5.2-5 gcc-4.5-base_4.5.2-5 gettext_0.18.1.1-3 gettext-base_0.18.1.1-3 gnupg_1.4.11-3 gpgv_1.4.11-3 grep_2.6.3-3 groff-base_1.21-4 gzip_1.3.12-9 hostname_3.06 html2text_1.3.2a-15 initscripts_2.88dsf-13.1 insserv_1.14.0-2 intltool-debian_0.35.0+20060710.1 libacl1_2.2.49-4 libattr1_1:2.4.44-2 libblkid1_2.17.2-9.1 libbz2-1.0_1.0.5-6 libc-bin_2.11.2-11 libc-dev-bin_2.11.2-11 libc6_2.11.2-11 libc6-dev_2.11.2-11 libcloog-ppl0_0.15.9-3 libcomerr2_1.41.12-2 libcroco3_0.6.2-1 libdb4.7_4.7.25-12 libdb4.8_4.8.30-5 libdpkg-perl_1.15.8.10 libelfg0_0.8.13-1 libgc1c2_1:7.1-7 libgcc1_1:4.5.2-5 libgdbm3_1.8.3-9 libglib2.0-0_2.28.2-1 libgmp10_2:5.0.1+dfsg-6 libgmp3c2_2:4.3.2+dfsg-1 libgmpxx4ldbl_2:5.0.1+dfsg-6 libgomp1_4.5.2-5 liblocale-gettext-perl_1.05-6 liblzma2_5.0.0-2 libmagic1_5.04-5 libmpc2_0.9-1 libmpfr4_3.0.0-9 libncurses5_5.8-1 libpam-modules_1.1.2-2 libpam-runtime_1.1.2-2 libpam0g_1.1.2-2 libpcre3_8.12-3 libpipeline1_1.1.0-1 libppl-c2_0.10.2-9 libppl-c4_0.11.2-1 libppl7_0.10.2-9 libppl9_0.11.2-1 libpwl5_0.11.2-1 libreadline6_6.1-3 libselinux1_2.0.96-1 libsepol1_2.0.42-1 libslang2_2.2.2-4 libss2_1.41.12-2 libstdc++6_4.5.2-5 libstdc++6-4.5-dev_4.5.2-5 libtext-charwidth-perl_0.04-6+b1 libtext-iconv-perl_1.7-2 libtext-wrapi18n-perl_0.06-7 libtimedate-perl_1.2000-1 libunistring0_0.9.3-3 libusb-0.1-4_2:0.1.12-17 libuuid1_2.17.2-9.1 libxml2_2.7.8.dfsg-2 linux-libc-dev_2.6.37-2 login_1:4.1.4.2+svn3283-3 lsb-base_3.2-27 make_3.81-8 man-db_2.5.9-4 mawk_1.3.3-15 mount_2.17.2-9.1 ncurses-base_5.8-1 ncurses-bin_5.8-1 passwd_1:4.1.4.2+svn3283-3 patch_2.6.1-1 perl_5.10.1-17 perl-base_5.10.1-17 perl-modules_5.10.1-17 po-debconf_1.0.16+nmu1 readline-common_6.1-3 sed_4.2.1-9 sensible-utils_0.0.6 sudo_1.7.4p6-1 sysv-rc_2.88dsf-13.1 sysvinit_2.88dsf-13.1 sysvinit-utils_2.88dsf-13.1 tar_1.25-3 tzdata_2011c-1 util-linux_2.17.2-9.1 xz-utils_5.0.0-2 zlib1g_1:1.2.3.4.dfsg-3 zlib1g-dev_1:1.2.3.4.dfsg-3
+Toolchain package versions: binutils_2.21.0.20110327-2 dpkg-dev_1.16.0.1 g++-4.5_4.5.2-8 gcc-4.5_4.5.2-8 libc6-dev_2.11.2-11 libstdc++6_4.6.0-2 libstdc++6-4.5-dev_4.5.2-8 linux-libc-dev_2.6.38-2
+Package versions: apt_0.8.13 base-files_6.1 base-passwd_3.5.22 bash_4.1-3 binutils_2.21.0.20110327-2 bsdmainutils_8.2.2 bsdutils_1:2.17.2-9.1 build-essential_11.5 bzip2_1.0.5-6 cdbs_0.4.92 coreutils_8.5-1 cpp_4:4.5.2-4 cpp-4.5_4.5.2-8 dash_0.5.5.1-7.4 debconf_1.5.38 debconf-english_1.5.38 debfoster_2.7-1.1 debhelper_8.1.3 debian-archive-keyring_2010.08.28 debianutils_3.4.4 diffutils_1:3.0-1 dpkg_1.15.8.10 dpkg-dev_1.16.0.1 e2fslibs_1.41.12-2 e2fsprogs_1.41.12-2 fakeroot_1.15.1-1 file_5.04-5 findutils_4.4.2-1+b1 g++_4:4.5.2-4 g++-4.5_4.5.2-8 gcc_4:4.5.2-4 gcc-4.4-base_4.4.5-15 gcc-4.5_4.5.2-8 gcc-4.5-base_4.5.2-8 gcc-4.6-base_4.6.0-2 gettext_0.18.1.1-3 gettext-base_0.18.1.1-3 gnupg_1.4.11-3 gpgv_1.4.11-3 grep_2.6.3-3 groff-base_1.21-5 gzip_1.3.12-9 hostname_3.06 html2text_1.3.2a-15 initscripts_2.88dsf-13.1 insserv_1.14.0-2.1 intltool-debian_0.35.0+20060710.1 libacl1_2.2.49-4 libattr1_1:2.4.44-2 libblkid1_2.17.2-9.1 libbz2-1.0_1.0.5-6 libc-bin_2.11.2-11 libc-dev-bin_2.11.2-11 libc6_2.11.2-11 libc6-dev_2.11.2-11 libcloog-ppl0_0.15.9-3 libcomerr2_1.41.12-2 libcroco3_0.6.2-1 libdb4.7_4.7.25-12 libdb4.8_4.8.30-5 libdpkg-perl_1.16.0.1 libelfg0_0.8.13-1 libgc1c2_1:7.1-7 libgcc1_1:4.6.0-2 libgdbm3_1.8.3-9 libglib2.0-0_2.28.4-1 libgmp10_2:5.0.1+dfsg-7 libgmp3c2_2:4.3.2+dfsg-2 libgmpxx4ldbl_2:5.0.1+dfsg-7 libgomp1_4.6.0-2 liblocale-gettext-perl_1.05-6 liblzma2_5.0.0-2 libmagic1_5.04-5 libmpc2_0.9-2 libmpfr4_3.0.0-9 libncurses5_5.8-1 libpam-modules_1.1.2-2 libpam-runtime_1.1.2-2 libpam0g_1.1.2-2 libpcre3_8.12-3 libpipeline1_1.2.0-1 libppl-c2_0.10.2-9 libppl-c4_0.11.2-3 libppl7_0.10.2-9 libppl9_0.11.2-3 libpwl5_0.11.2-3 libreadline6_6.1-3 libselinux1_2.0.98-1 libsepol1_2.0.42-1 libslang2_2.2.2-4 libss2_1.41.12-2 libstdc++6_4.6.0-2 libstdc++6-4.5-dev_4.5.2-8 libtext-charwidth-perl_0.04-6+b1 libtext-iconv-perl_1.7-2 libtext-wrapi18n-perl_0.06-7 libtimedate-perl_1.2000-1 libunistring0_0.9.3-3 libusb-0.1-4_2:0.1.12-17 libuuid1_2.17.2-9.1 libxml2_2.7.8.dfsg-2 linux-libc-dev_2.6.38-2 login_1:4.1.4.2+svn3283-3 lsb-base_3.2-27 make_3.81-8 man-db_2.6.0.1-1 mawk_1.3.3-15 mount_2.17.2-9.1 ncurses-base_5.8-1 ncurses-bin_5.8-1 passwd_1:4.1.4.2+svn3283-3 patch_2.6.1-1 perl_5.10.1-18 perl-base_5.10.1-18 perl-modules_5.10.1-18 po-debconf_1.0.16+nmu1 readline-common_6.1-3 sed_4.2.1-9 sensible-utils_0.0.6 sudo_1.7.4p6-1 sysv-rc_2.88dsf-13.1 sysvinit_2.88dsf-13.1 sysvinit-utils_2.88dsf-13.1 tar_1.25-3 tzdata_2011d-1 util-linux_2.17.2-9.1 xz-utils_5.0.0-2 zlib1g_1:1.2.3.4.dfsg-3 zlib1g-dev_1:1.2.3.4.dfsg-3
┌──────────────────────────────────────────────────────────────────────────────┐
│ Build │
@@ -224,14 +300,14 @@ Package versions: apt_0.8.11.5 base-files_6.1 base-passwd_3.5.22 bash_4.1-3 binu
Unpack source
─────────────
-dpkg-source: warning: -sn is not a valid option for Dpkg::Source::Package::V3::quilt
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/Source/Package.pm line 258.
gpgv: keyblock resource `/home/buildd/.gnupg/trustedkeys.gpg': file open error
-gpgv: Signature made Wed Jan 19 13:19:58 2011 UTC using RSA key ID 2295D502
+gpgv: Signature made Tue Apr 12 08:22:29 2011 UTC using RSA key ID 2295D502
gpgv: Can't check signature: public key not found
-dpkg-source: warning: failed to verify signature on ./tabix_0.2.3-1.dsc
-dpkg-source: info: extracting tabix in tabix-0.2.3
-dpkg-source: info: unpacking tabix_0.2.3.orig.tar.bz2
-dpkg-source: info: unpacking tabix_0.2.3-1.debian.tar.gz
+dpkg-source: warning: failed to verify signature on ./tabix_0.2.4-1.dsc
+dpkg-source: info: extracting tabix in tabix-0.2.4
+dpkg-source: info: unpacking tabix_0.2.4.orig.tar.bz2
+dpkg-source: info: unpacking tabix_0.2.4-1.debian.tar.gz
Check disc space
────────────────
@@ -240,47 +316,61 @@ Check disc space
dpkg-buildpackage
─────────────────
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
dpkg-buildpackage: export CFLAGS from dpkg-buildflags (origin: vendor): -g -O2
dpkg-buildpackage: export CPPFLAGS from dpkg-buildflags (origin: vendor):
dpkg-buildpackage: export CXXFLAGS from dpkg-buildflags (origin: vendor): -g -O2
dpkg-buildpackage: export FFLAGS from dpkg-buildflags (origin: vendor): -g -O2
dpkg-buildpackage: export LDFLAGS from dpkg-buildflags (origin: vendor):
dpkg-buildpackage: source package tabix
-dpkg-buildpackage: source version 0.2.3-1
- dpkg-source --before-build tabix-0.2.3
+dpkg-buildpackage: source version 0.2.4-1
+ dpkg-source --before-build tabix-0.2.4
dpkg-buildpackage: host architecture powerpc
- /usr/bin/fakeroot debian/rules clean
+ fakeroot debian/rules clean
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
test -x debian/rules
dh_testroot
rm -f debian/stamp-makefile-build debian/stamp-makefile-install
/usr/bin/make -C . CFLAGS="-g -O2 -g -O2" CXXFLAGS="-g -O2 -g -O2" CPPFLAGS="" LDFLAGS="" -k clean
-make[1]: Entering directory `/build/buildd-tabix_0.2.3-1-powerpc-RfX00f/tabix-0.2.3'
-make[2]: Entering directory `/build/buildd-tabix_0.2.3-1-powerpc-RfX00f/tabix-0.2.3'
+make[1]: Entering directory `/build/buildd-tabix_0.2.4-1-powerpc-EgRMKo/tabix-0.2.4'
+make[2]: Entering directory `/build/buildd-tabix_0.2.4-1-powerpc-EgRMKo/tabix-0.2.4'
rm -fr gmon.out *.o a.out *.dSYM tabix bgzip *~ *.a tabix.aux tabix.log tabix.pdf *.class libtabix.*.dylib libtabix.so*
-make[2]: Leaving directory `/build/buildd-tabix_0.2.3-1-powerpc-RfX00f/tabix-0.2.3'
-make[1]: Leaving directory `/build/buildd-tabix_0.2.3-1-powerpc-RfX00f/tabix-0.2.3'
+make[2]: Leaving directory `/build/buildd-tabix_0.2.4-1-powerpc-EgRMKo/tabix-0.2.4'
+make[1]: Leaving directory `/build/buildd-tabix_0.2.4-1-powerpc-EgRMKo/tabix-0.2.4'
dh_clean
debian/rules build
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
test -x debian/rules
mkdir -p "."
/usr/share/cdbs/1/rules/buildcore.mk:109: WARNING: DEB_COMPRESS_EXCLUDE is a deprecated variable
/usr/bin/make -C . CFLAGS="-g -O2 -g -O2" CXXFLAGS="-g -O2 -g -O2" CPPFLAGS="" LDFLAGS=""
-make[1]: Entering directory `/build/buildd-tabix_0.2.3-1-powerpc-RfX00f/tabix-0.2.3'
-make[2]: Entering directory `/build/buildd-tabix_0.2.3-1-powerpc-RfX00f/tabix-0.2.3'
+make[1]: Entering directory `/build/buildd-tabix_0.2.4-1-powerpc-EgRMKo/tabix-0.2.4'
+make[2]: Entering directory `/build/buildd-tabix_0.2.4-1-powerpc-EgRMKo/tabix-0.2.4'
gcc -c -g -O2 -g -O2 -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE bgzf.c -o bgzf.o
gcc -c -g -O2 -g -O2 -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE kstring.c -o kstring.o
gcc -c -g -O2 -g -O2 -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE knetfile.c -o knetfile.o
gcc -c -g -O2 -g -O2 -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE index.c -o index.o
-ar -cru libtabix.a bgzf.o kstring.o knetfile.o index.o
+gcc -c -g -O2 -g -O2 -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE bedidx.c -o bedidx.o
+ar -cru libtabix.a bgzf.o kstring.o knetfile.o index.o bedidx.o
gcc -c -g -O2 -g -O2 -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE main.c -o main.o
gcc -g -O2 -g -O2 -o tabix main.o -lm -lz -L. -ltabix
gcc -c -g -O2 -g -O2 -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE bgzip.c -o bgzip.o
gcc -g -O2 -g -O2 -o bgzip bgzip.o bgzf.o knetfile.o -lz
-make[2]: Leaving directory `/build/buildd-tabix_0.2.3-1-powerpc-RfX00f/tabix-0.2.3'
-make[1]: Leaving directory `/build/buildd-tabix_0.2.3-1-powerpc-RfX00f/tabix-0.2.3'
+make[2]: Leaving directory `/build/buildd-tabix_0.2.4-1-powerpc-EgRMKo/tabix-0.2.4'
+make[1]: Leaving directory `/build/buildd-tabix_0.2.4-1-powerpc-EgRMKo/tabix-0.2.4'
touch debian/stamp-makefile-build
DEB_MAKE_CHECK_TARGET unset, not running checks
- /usr/bin/fakeroot debian/rules binary-arch
+ fakeroot debian/rules binary-arch
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
test -x debian/rules
dh_testroot
dh_prep
@@ -322,58 +412,59 @@ dpkg-shlibdeps: warning: dependency on libm.so.6 could be avoided if "debian/tab
dh_gencontrol -ptabix
dh_md5sums -ptabix
dh_builddeb -ptabix
-dpkg-deb: building package `tabix' in `../tabix_0.2.3-1_powerpc.deb'.
- dpkg-genchanges -B -mpowerpc Build Daemon (poulenc) <buildd_powerpc-poulenc at buildd.debian.org> >../tabix_0.2.3-1_powerpc.changes
+dpkg-deb: building package `tabix' in `../tabix_0.2.4-1_powerpc.deb'.
+ dpkg-genchanges -B -mpowerpc Build Daemon (porpora) <buildd_powerpc-porpora at buildd.debian.org> >../tabix_0.2.4-1_powerpc.changes
dpkg-genchanges: arch-specific upload - not including arch-independent packages
dpkg-genchanges: binary-only upload - not including any source code
- dpkg-source --after-build tabix-0.2.3
+ dpkg-source --after-build tabix-0.2.4
dpkg-buildpackage: binary only upload (no source included)
────────────────────────────────────────────────────────────────────────────────
-Build finished at 20110316-1122
+Build finished at 20110412-0946
-tabix_0.2.3-1_powerpc.changes:
+tabix_0.2.4-1_powerpc.changes:
Format: 1.8
-Date: Wed, 19 Jan 2011 22:16:39 +0900
+Date: Tue, 12 Apr 2011 17:15:33 +0900
Source: tabix
Binary: tabix
Architecture: powerpc
-Version: 0.2.3-1
+Version: 0.2.4-1
Distribution: sid
Urgency: low
-Maintainer: powerpc Build Daemon (poulenc) <buildd_powerpc-poulenc at buildd.debian.org>
+Maintainer: powerpc Build Daemon (porpora) <buildd_powerpc-porpora at buildd.debian.org>
Changed-By: Charles Plessy <plessy at debian.org>
Description:
tabix - generic indexer for TAB-delimited genome position files
-Closes: 606446
Changes:
- tabix (0.2.3-1) unstable; urgency=low
+ tabix (0.2.4-1) unstable; urgency=low
.
- * Initial release (Closes: #606446)
+ * New upstream release.
+ * Incremented Standards-Version to reflect conformance with Policy 3.9.2
+ (debian/control).
Checksums-Sha1:
- 0f5100113131ce6d0a123c679627d4b3dc343adf 52774 tabix_0.2.3-1_powerpc.deb
+ 7f4c421196edc7ae6701f2eb7f3ed55f8c6bebe1 58194 tabix_0.2.4-1_powerpc.deb
Checksums-Sha256:
- 824fee7d5adc6a8306e46f0d094e70194f5c5ad481fa0400d9f0d8ca47b6f7d4 52774 tabix_0.2.3-1_powerpc.deb
+ f0cd7ec1e24676240cf1633626836ae20da60b8ca48201a873d81e0d60c7acce 58194 tabix_0.2.4-1_powerpc.deb
Files:
- b865987d673b7112e8d4f83205eed6db 52774 science optional tabix_0.2.3-1_powerpc.deb
+ ecb4a56ff45c45a4b724575fa149268f 58194 science optional tabix_0.2.4-1_powerpc.deb
┌──────────────────────────────────────────────────────────────────────────────┐
│ Package contents │
└──────────────────────────────────────────────────────────────────────────────┘
-tabix_0.2.3-1_powerpc.deb
+tabix_0.2.4-1_powerpc.deb
─────────────────────────
new debian package, version 2.0.
- size 52774 bytes: control archive= 961 bytes.
- 780 bytes, 16 lines control
+ size 58194 bytes: control archive= 959 bytes.
+ 787 bytes, 16 lines control
587 bytes, 9 lines md5sums
Package: tabix
- Version: 0.2.3-1
+ Version: 0.2.4-1
Architecture: powerpc
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
- Installed-Size: 156
- Depends: libc6 (>= 2.7), zlib1g (>= 1:1.1.4)
+ Installed-Size: 168
+ Depends: libc6 (>= 2.7), zlib1g (>= 1:1.2.3.3.dfsg)
Section: science
Priority: optional
Homepage: http://samtools.sourceforge.net/tabix.shtml
@@ -385,25 +476,25 @@ tabix_0.2.3-1_powerpc.deb
chromosomal coordinates. Fast data retrieval also works over network if an URI
is given as a file name.
-drwxr-xr-x root/root 0 2011-03-16 11:22 ./
-drwxr-xr-x root/root 0 2011-03-16 11:22 ./usr/
-drwxr-xr-x root/root 0 2011-03-16 11:22 ./usr/share/
-drwxr-xr-x root/root 0 2011-03-16 11:22 ./usr/share/man/
-drwxr-xr-x root/root 0 2011-03-16 11:22 ./usr/share/man/man1/
--rw-r--r-- root/root 1716 2011-03-16 11:22 ./usr/share/man/man1/tabix.1.gz
-drwxr-xr-x root/root 0 2011-03-16 11:22 ./usr/share/doc/
-drwxr-xr-x root/root 0 2011-03-16 11:22 ./usr/share/doc/tabix/
--rw-r--r-- root/root 2920 2010-12-08 17:38 ./usr/share/doc/tabix/changelog.gz
--rw-r--r-- root/root 1346 2011-01-19 13:03 ./usr/share/doc/tabix/copyright
--rw-r--r-- root/root 154 2011-01-19 13:16 ./usr/share/doc/tabix/changelog.Debian.gz
--rw-r--r-- root/root 944 2010-12-08 17:38 ./usr/share/doc/tabix/NEWS.gz
-drwxr-xr-x root/root 0 2011-03-16 11:22 ./usr/share/doc/tabix/examples/
--rw-r--r-- root/root 260 2010-12-08 17:34 ./usr/share/doc/tabix/examples/example.gtf.gz.tbi
+drwxr-xr-x root/root 0 2011-04-12 09:46 ./
+drwxr-xr-x root/root 0 2011-04-12 09:46 ./usr/
+drwxr-xr-x root/root 0 2011-04-12 09:46 ./usr/bin/
+-rwxr-xr-x root/root 65732 2011-04-12 09:46 ./usr/bin/tabix
+-rwxr-xr-x root/root 25252 2011-04-12 09:46 ./usr/bin/bgzip
+drwxr-xr-x root/root 0 2011-04-12 09:46 ./usr/share/
+drwxr-xr-x root/root 0 2011-04-12 09:46 ./usr/share/man/
+drwxr-xr-x root/root 0 2011-04-12 09:46 ./usr/share/man/man1/
+-rw-r--r-- root/root 1834 2011-04-12 09:46 ./usr/share/man/man1/tabix.1.gz
+drwxr-xr-x root/root 0 2011-04-12 09:46 ./usr/share/doc/
+drwxr-xr-x root/root 0 2011-04-12 09:46 ./usr/share/doc/tabix/
+-rw-r--r-- root/root 3487 2011-04-10 19:21 ./usr/share/doc/tabix/changelog.gz
+-rw-r--r-- root/root 1473 2011-04-12 07:17 ./usr/share/doc/tabix/copyright
+drwxr-xr-x root/root 0 2011-04-12 09:46 ./usr/share/doc/tabix/examples/
+-rw-r--r-- root/root 259 2011-04-10 19:21 ./usr/share/doc/tabix/examples/example.gtf.gz.tbi
-rw-r--r-- root/root 3778 2010-12-08 17:34 ./usr/share/doc/tabix/examples/example.gtf.gz
-drwxr-xr-x root/root 0 2011-03-16 11:22 ./usr/bin/
--rwxr-xr-x root/root 56360 2011-03-16 11:22 ./usr/bin/tabix
--rwxr-xr-x root/root 24944 2011-03-16 11:22 ./usr/bin/bgzip
-lrwxrwxrwx root/root 0 2011-03-16 11:22 ./usr/share/man/man1/bgzip.1.gz -> tabix.1.gz
+-rw-r--r-- root/root 1169 2011-04-10 19:21 ./usr/share/doc/tabix/NEWS.gz
+-rw-r--r-- root/root 262 2011-04-12 08:16 ./usr/share/doc/tabix/changelog.Debian.gz
+lrwxrwxrwx root/root 0 2011-04-12 09:46 ./usr/share/man/man1/bgzip.1.gz -> tabix.1.gz
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -412,9 +503,31 @@ lrwxrwxrwx root/root 0 2011-03-16 11:22 ./usr/share/man/man1/bgzip.1.gz
Built successfully
────────────────────────────────────────────────────────────────────────────────
-Purging /var/lib/schroot/mount/sid-powerpc-sbuild-c2254c63-e741-4c92-a4b0-0b57769c914b/build/buildd-tabix_0.2.3-1-powerpc-RfX00f
-Not removing build depends: cloned chroot in use
-────────────────────────────────────────────────────────────────────────────────
-Finished at 20110316-1122
-Build needed 00:01:56, 1256k disc space
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Post Build │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+Purging /var/lib/schroot/mount/sid-powerpc-sbuild-77fdb2b1-e638-4fce-addc-36efe3c0f883/build/buildd-tabix_0.2.4-1-powerpc-EgRMKo
+Not cleaning session: cloned chroot in use
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Summary │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+Architecture: powerpc
+Build-Space: 1412
+Build-Time: 22
+Distribution: sid
+Install-Time: 74
+Job: tabix_0.2.4-1
+Package: tabix
+Package-Time: 138
+Source-Version: 0.2.4-1
+Space: 1412
+Status: successful
+Version: 0.2.4-1
+────────────────────────────────────────────────────────────────────────────────
+Finished at 20110412-0946
+Build needed 00:02:18, 1412k disc space
+Signature with key 'CDFA0A89' requested:
diff --git a/s390.log b/s390.log
index 127585d..6659278 100644
--- a/s390.log
+++ b/s390.log
@@ -1,4 +1,4 @@
-From buildd at zandonai.debian.org Wed Mar 16 11:18:12 2011
+From buildd at zandonai.debian.org Tue Apr 12 09:50:26 2011
Return-path: <buildd at zandonai.debian.org>
Received: from merikanto.debian.org ([2001:858:2:2:216:35ff:fec4:a49a])
from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
@@ -6,63 +6,64 @@ Received: from merikanto.debian.org ([2001:858:2:2:216:35ff:fec4:a49a])
EMAIL=hostmaster at merikanto.debian.org (verified)
by grieg.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
(Exim 4.69) (envelope-from <buildd at zandonai.debian.org>)
- id 1Pzojz-00056O-Va
- for logs at buildd.debian.org; Wed, 16 Mar 2011 11:18:12 +0000
+ id 1Q9aEr-0003ry-PQ
+ for logs at buildd.debian.org; Tue, 12 Apr 2011 09:50:25 +0000
Received: from zandonai.debian.org ([80.245.147.46])
from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
CN=zandonai.debian.org,
EMAIL=hostmaster at zandonai.debian.org (verified)
by merikanto.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
- (Exim 4.69) (envelope-from <buildd at zandonai.debian.org>)
- id 1Pzojw-0005Y9-Bj; Wed, 16 Mar 2011 11:18:08 +0000
+ (Exim 4.72) (envelope-from <buildd at zandonai.debian.org>)
+ id 1Q9aEl-00033m-6o; Tue, 12 Apr 2011 09:50:19 +0000
Received: from buildd by zandonai.debian.org with local (Exim 4.69)
(envelope-from <buildd at zandonai.debian.org>)
- id 1Pzojv-0002JX-DX; Wed, 16 Mar 2011 11:18:07 +0000
+ id 1Q9aEk-0005Ye-N7; Tue, 12 Apr 2011 09:50:18 +0000
+MIME-Version: 1.0
+Content-Transfer-Encoding: binary
+X-Mailer: MIME::Lite 3.021 (F2.76; B3.07_01; Q3.07)
+Date: Tue, 12 Apr 2011 09:50:18 +0000
From: buildd on zandonai <buildd at zandonai.debian.org>
To: phil+buildd at philkern.de,logs at buildd.debian.org
-Subject: Log for successful build of tabix_0.2.3-1 on s390 (dist=sid)
-Content-Type: text/plain; charset=UTF-8
-Content-Transfer-Encoding: 8bit
-Message-Id: <E1Pzojv-0002JX-DX at zandonai.debian.org>
-Date: Wed, 16 Mar 2011 11:18:07 +0000
+Subject: Log for successful build of tabix_0.2.4-1 on s390 (dist=sid)
+Key-Id: 9BD94C88
+Message-Id: <E1Q9aEk-0005Ye-N7 at zandonai.debian.org>
Delivered-To: logs at buildd.debian.org
-sbuild (Debian sbuild) 0.60.5 (14 Nov 2010) on zandonai.debian.org
+sbuild (Debian sbuild) 0.61.0 (23 Feb 2011) on zandonai.debian.org
╔══════════════════════════════════════════════════════════════════════════════╗
-║ tabix 0.2.3-1 (s390) 16 Mar 2011 11:17 ║
+║ tabix 0.2.4-1 (s390) 12 Apr 2011 09:49 ║
╚══════════════════════════════════════════════════════════════════════════════╝
Package: tabix
-Version: 0.2.3-1
+Version: 0.2.4-1
+Source Version: 0.2.4-1
Architecture: s390
-Chroot Build Dir: /var/lib/schroot/mount/sid-s390-sbuild-53a260d1-9fe5-40bd-843a-9649610d4668/build/buildd-tabix_0.2.3-1-s390-MEAt1b
-Start Time: 20110316-1117
-Get:1 http://ftp.de.debian.org unstable InRelease [147 kB]
-Get:2 http://ftp.de.debian.org unstable/main Sources [4205 kB]
-Get:3 http://incoming.debian.org unstable InRelease [147 kB]
+Get:1 http://ftp.de.debian.org unstable InRelease [151 kB]
+Get:2 http://incoming.debian.org unstable InRelease [151 kB]
+Get:3 http://ftp.de.debian.org unstable/main Sources [5264 kB]
Ign http://incoming.debian.org InRelease
-Get:4 http://incoming.debian.org Release.gpg [835 B]
-Get:5 http://incoming.debian.org unstable/main Sources [4205 kB]
-Get:6 http://ftp.de.debian.org unstable/contrib Sources [38.8 kB]
-Get:7 http://ftp.de.debian.org unstable/non-free Sources [81.3 kB]
-Get:8 http://ftp.de.debian.org unstable/main s390 Packages [6840 kB]
-Get:9 http://ftp.de.debian.org unstable/contrib s390 Packages [50.3 kB]
+Get:4 http://incoming.debian.org Release.gpg [836 B]
+Get:5 http://incoming.debian.org unstable/main Sources [5265 kB]
+Get:6 http://ftp.de.debian.org unstable/contrib Sources [48.2 kB]
+Get:7 http://ftp.de.debian.org unstable/non-free Sources [97.4 kB]
+Get:8 http://ftp.de.debian.org unstable/main s390 Packages [6988 kB]
+Get:9 http://ftp.de.debian.org unstable/contrib s390 Packages [51.4 kB]
Ign http://ftp.de.debian.org unstable/contrib TranslationIndex
-Get:10 http://ftp.de.debian.org unstable/main TranslationIndex [2232 B]
+Get:10 http://ftp.de.debian.org unstable/main TranslationIndex [2264 B]
Ign http://ftp.de.debian.org unstable/contrib Translation-en
-Get:11 http://incoming.debian.org unstable/contrib Sources [38.8 kB]
-Get:12 http://incoming.debian.org unstable/non-free Sources [81.3 kB]
-Get:13 http://incoming.debian.org unstable/main s390 Packages [6840 kB]
-Get:14 http://incoming.debian.org unstable/contrib s390 Packages [50.3 kB]
+Get:11 http://incoming.debian.org unstable/contrib Sources [48.2 kB]
+Get:12 http://incoming.debian.org unstable/non-free Sources [97.4 kB]
+Get:13 http://incoming.debian.org unstable/main s390 Packages [6985 kB]
+Get:14 http://incoming.debian.org unstable/contrib s390 Packages [51.4 kB]
Ign http://incoming.debian.org unstable/contrib TranslationIndex
-Get:15 http://incoming.debian.org unstable/main TranslationIndex [2232 B]
+Get:15 http://incoming.debian.org unstable/main TranslationIndex [2264 B]
Get:16 http://incoming.debian.org Release [1604 B]
-Get:17 http://incoming.debian.org Sources [30.2 kB]
-Get:18 http://incoming.debian.org Packages [416 kB]
+Get:17 http://incoming.debian.org Sources [49.0 kB]
+Get:18 http://incoming.debian.org Packages [775 kB]
Ign http://incoming.debian.org unstable/contrib Translation-en
Ign http://incoming.debian.org Translation-en
-Fetched 23.2 MB in 24s (936 kB/s)
+Fetched 26.0 MB in 26s (982 kB/s)
Reading package lists...
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -83,80 +84,133 @@ Building dependency tree...
Reading state information...
NOTICE: 'tabix' packaging is maintained in the 'Git' version control system at:
git://git.debian.org/debian-med/tabix.git
-Need to get 50.4 kB of source archives.
-Get:1 http://incoming.debian.org/buildd-unstable/ tabix 0.2.3-1 (dsc) [1882 B]
-Get:2 http://incoming.debian.org/buildd-unstable/ tabix 0.2.3-1 (tar) [46.4 kB]
-Get:3 http://incoming.debian.org/buildd-unstable/ tabix 0.2.3-1 (diff) [2130 B]
-Fetched 50.4 kB in 0s (77.3 kB/s)
+Need to get 58.4 kB of source archives.
+Get:1 http://incoming.debian.org/buildd-unstable/ tabix 0.2.4-1 (dsc) [1882 B]
+Get:2 http://incoming.debian.org/buildd-unstable/ tabix 0.2.4-1 (tar) [54.2 kB]
+Get:3 http://incoming.debian.org/buildd-unstable/ tabix 0.2.4-1 (diff) [2322 B]
+Fetched 58.4 kB in 0s (88.5 kB/s)
Download complete and in download only mode
Check arch
──────────
-** Using build dependencies supplied by package:
-Build-Depends: cdbs, debhelper (>= 8), zlib1g-dev
┌──────────────────────────────────────────────────────────────────────────────┐
-│ Install build dependencies (internal resolver) │
+│ Install core build dependencies (internal resolver) │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+Build-Depends: build-essential, fakeroot
+Checking for already installed dependencies...
+build-essential: already installed (11.5)
+fakeroot: already installed (1.15.1-1)
+Checking for dependency conflicts...
+Installing positive dependencies:
+Reading package lists...
+Building dependency tree...
+Reading state information...
+0 upgraded, 0 newly installed, 0 to remove and 19 not upgraded.
+Removing negative dependencies:
+Reading package lists...
+Building dependency tree...
+Reading state information...
+0 upgraded, 0 newly installed, 0 to remove and 19 not upgraded.
+Checking correctness of dependencies...
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Install tabix build dependencies (internal resolver) │
└──────────────────────────────────────────────────────────────────────────────┘
-Checking for already installed source dependencies...
+Build-Depends: base-files, base-passwd, bash, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, ncurses-base, ncurses-bin, perl-base, sed, login, sysvinit-utils, sysvinit, tar, bsdutils, mount, util-linux, libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), cdbs, debhelper (>= 8), zlib1g-dev
+Checking for already installed dependencies...
+base-files: already installed (6.1)
+base-passwd: already installed (3.5.22)
+bash: already installed (4.1-3)
+coreutils: already installed (8.5-1)
+dash: already installed (0.5.5.1-7.4)
+debianutils: already installed (3.4.4)
+diffutils: already installed (1:3.0-1)
+dpkg: already installed (1.15.8.10)
+e2fsprogs: already installed (1.41.12-2)
+findutils: already installed (4.4.2-1+b1)
+grep: already installed (2.6.3-3)
+gzip: already installed (1.3.12-9)
+hostname: already installed (3.06)
+ncurses-base: already installed (5.8+20110307-1)
+ncurses-bin: already installed (5.8+20110307-1)
+perl-base: already installed (5.10.1-18)
+sed: already installed (4.2.1-9)
+login: already installed (1:4.1.4.2+svn3283-3)
+sysvinit-utils: already installed (2.88dsf-13.1)
+sysvinit: already installed (2.88dsf-13.1)
+tar: already installed (1.25-3)
+bsdutils: already installed (1:2.17.2-9.1)
+mount: already installed (2.17.2-9.1)
+util-linux: already installed (2.17.2-9.1)
+libc6-dev: already installed (2.11.2-11)
+gcc: already installed (4:4.4.5-6 >= 4:4.4.3 is satisfied)
+g++: already installed (4:4.4.5-6 >= 4:4.4.3 is satisfied)
+make: already installed (3.81-8)
+dpkg-dev: already installed (1.15.8.10 >= 1.13.5 is satisfied)
cdbs: missing
debhelper: missing
-Using default version 8.1.2
+Using default version 8.1.3
zlib1g-dev: missing
-Checking for source dependency conflicts...
+Checking for dependency conflicts...
Installing positive dependencies: cdbs debhelper zlib1g-dev
Reading package lists...
Building dependency tree...
Reading state information...
The following extra packages will be installed:
- bsdmainutils file gettext gettext-base groff-base html2text intltool-debian
- libcroco3 libglib2.0-0 libmagic1 libpcre3 libpipeline1 libunistring0 libxml2
- man-db po-debconf
+ bsdmainutils dpkg-dev file gettext gettext-base groff-base html2text
+ intltool-debian libcroco3 libdpkg-perl libglib2.0-0 libmagic1 libpcre3
+ libpipeline1 libunistring0 libxml2 man-db po-debconf
Suggested packages:
- wamerican wordlist whois vacation devscripts doc-base dh-make gettext-doc
- groff less www-browser libmail-box-perl
+ wamerican wordlist whois vacation devscripts doc-base dh-make debian-keyring
+ gettext-doc groff less www-browser libmail-box-perl
Recommended packages:
- autotools-dev curl wget lynx-cur autopoint libglib2.0-data shared-mime-info
- xml-core libmail-sendmail-perl
+ autotools-dev libalgorithm-merge-perl curl wget lynx-cur autopoint
+ libglib2.0-data shared-mime-info xml-core libmail-sendmail-perl
The following NEW packages will be installed:
bsdmainutils cdbs debhelper file gettext gettext-base groff-base html2text
intltool-debian libcroco3 libglib2.0-0 libmagic1 libpcre3 libpipeline1
libunistring0 libxml2 man-db po-debconf zlib1g-dev
-0 upgraded, 19 newly installed, 0 to remove and 2 not upgraded.
-Need to get 10.6 MB of archives.
-After this operation, 29.7 MB of additional disk space will be used.
+The following packages will be upgraded:
+ dpkg-dev libdpkg-perl
+2 upgraded, 19 newly installed, 0 to remove and 17 not upgraded.
+Need to get 12.2 MB of archives.
+After this operation, 29.9 MB of additional disk space will be used.
Get:1 http://ftp.de.debian.org/debian/ unstable/main bsdmainutils s390 8.2.2 [208 kB]
-Get:2 http://ftp.de.debian.org/debian/ unstable/main groff-base s390 1.21-4 [1158 kB]
-Get:3 http://ftp.de.debian.org/debian/ unstable/main libpipeline1 s390 1.1.0-1 [38.0 kB]
-Get:4 http://ftp.de.debian.org/debian/ unstable/main man-db s390 2.5.9-4 [1015 kB]
+Get:2 http://ftp.de.debian.org/debian/ unstable/main groff-base s390 1.21-5 [1158 kB]
+Get:3 http://ftp.de.debian.org/debian/ unstable/main libpipeline1 s390 1.2.0-1 [38.7 kB]
+Get:4 http://ftp.de.debian.org/debian/ unstable/main man-db s390 2.6.0.1-1 [1017 kB]
Get:5 http://ftp.de.debian.org/debian/ unstable/main libmagic1 s390 5.04-5 [243 kB]
Get:6 http://ftp.de.debian.org/debian/ unstable/main file s390 5.04-5 [50.0 kB]
Get:7 http://ftp.de.debian.org/debian/ unstable/main gettext-base s390 0.18.1.1-3 [142 kB]
Get:8 http://ftp.de.debian.org/debian/ unstable/main libpcre3 s390 8.12-3 [262 kB]
Get:9 http://ftp.de.debian.org/debian/ unstable/main libxml2 s390 2.7.8.dfsg-2 [873 kB]
-Get:10 http://ftp.de.debian.org/debian/ unstable/main html2text s390 1.3.2a-15 [101 kB]
-Get:11 http://ftp.de.debian.org/debian/ unstable/main libglib2.0-0 s390 2.28.2-1 [1632 kB]
-Get:12 http://ftp.de.debian.org/debian/ unstable/main libcroco3 s390 0.6.2-1 [128 kB]
-Get:13 http://ftp.de.debian.org/debian/ unstable/main libunistring0 s390 0.9.3-3 [431 kB]
-Get:14 http://ftp.de.debian.org/debian/ unstable/main gettext s390 0.18.1.1-3 [2068 kB]
-Get:15 http://ftp.de.debian.org/debian/ unstable/main intltool-debian s390 0.35.0+20060710.1 [30.8 kB]
-Get:16 http://ftp.de.debian.org/debian/ unstable/main po-debconf s390 1.0.16+nmu1 [223 kB]
-Get:17 http://ftp.de.debian.org/debian/ unstable/main debhelper s390 8.1.2 [553 kB]
-Get:18 http://ftp.de.debian.org/debian/ unstable/main cdbs s390 0.4.92 [1268 kB]
-Get:19 http://ftp.de.debian.org/debian/ unstable/main zlib1g-dev s390 1:1.2.3.4.dfsg-3 [193 kB]
+Get:10 http://ftp.de.debian.org/debian/ unstable/main dpkg-dev s390 1.16.0.1 [871 kB]
+Get:11 http://ftp.de.debian.org/debian/ unstable/main libdpkg-perl s390 1.16.0.1 [748 kB]
+Get:12 http://ftp.de.debian.org/debian/ unstable/main html2text s390 1.3.2a-15 [101 kB]
+Get:13 http://ftp.de.debian.org/debian/ unstable/main libglib2.0-0 s390 2.28.4-1 [1635 kB]
+Get:14 http://ftp.de.debian.org/debian/ unstable/main libcroco3 s390 0.6.2-1 [128 kB]
+Get:15 http://ftp.de.debian.org/debian/ unstable/main libunistring0 s390 0.9.3-3 [431 kB]
+Get:16 http://ftp.de.debian.org/debian/ unstable/main gettext s390 0.18.1.1-3 [2068 kB]
+Get:17 http://ftp.de.debian.org/debian/ unstable/main intltool-debian s390 0.35.0+20060710.1 [30.8 kB]
+Get:18 http://ftp.de.debian.org/debian/ unstable/main po-debconf s390 1.0.16+nmu1 [223 kB]
+Get:19 http://ftp.de.debian.org/debian/ unstable/main debhelper s390 8.1.3 [554 kB]
+Get:20 http://ftp.de.debian.org/debian/ unstable/main cdbs s390 0.4.92 [1268 kB]
+Get:21 http://ftp.de.debian.org/debian/ unstable/main zlib1g-dev s390 1:1.2.3.4.dfsg-3 [193 kB]
debconf: delaying package configuration, since apt-utils is not installed
-Fetched 10.6 MB in 3s (2901 kB/s)
+Fetched 12.2 MB in 4s (3001 kB/s)
Selecting previously deselected package bsdmainutils.
-(Reading database ... 10139 files and directories currently installed.)
+(Reading database ... 10051 files and directories currently installed.)
Unpacking bsdmainutils (from .../bsdmainutils_8.2.2_s390.deb) ...
Selecting previously deselected package groff-base.
-Unpacking groff-base (from .../groff-base_1.21-4_s390.deb) ...
+Unpacking groff-base (from .../groff-base_1.21-5_s390.deb) ...
Selecting previously deselected package libpipeline1.
-Unpacking libpipeline1 (from .../libpipeline1_1.1.0-1_s390.deb) ...
+Unpacking libpipeline1 (from .../libpipeline1_1.2.0-1_s390.deb) ...
Selecting previously deselected package man-db.
-Unpacking man-db (from .../man-db_2.5.9-4_s390.deb) ...
+Unpacking man-db (from .../man-db_2.6.0.1-1_s390.deb) ...
Selecting previously deselected package libmagic1.
Unpacking libmagic1 (from .../libmagic1_5.04-5_s390.deb) ...
Selecting previously deselected package file.
@@ -167,10 +221,14 @@ Selecting previously deselected package libpcre3.
Unpacking libpcre3 (from .../libpcre3_8.12-3_s390.deb) ...
Selecting previously deselected package libxml2.
Unpacking libxml2 (from .../libxml2_2.7.8.dfsg-2_s390.deb) ...
+Preparing to replace dpkg-dev 1.15.8.10 (using .../dpkg-dev_1.16.0.1_s390.deb) ...
+Unpacking replacement dpkg-dev ...
+Preparing to replace libdpkg-perl 1.15.8.10 (using .../libdpkg-perl_1.16.0.1_s390.deb) ...
+Unpacking replacement libdpkg-perl ...
Selecting previously deselected package html2text.
Unpacking html2text (from .../html2text_1.3.2a-15_s390.deb) ...
Selecting previously deselected package libglib2.0-0.
-Unpacking libglib2.0-0 (from .../libglib2.0-0_2.28.2-1_s390.deb) ...
+Unpacking libglib2.0-0 (from .../libglib2.0-0_2.28.4-1_s390.deb) ...
Selecting previously deselected package libcroco3.
Unpacking libcroco3 (from .../libcroco3_0.6.2-1_s390.deb) ...
Selecting previously deselected package libunistring0.
@@ -182,7 +240,7 @@ Unpacking intltool-debian (from .../intltool-debian_0.35.0+20060710.1_s390.deb)
Selecting previously deselected package po-debconf.
Unpacking po-debconf (from .../po-debconf_1.0.16+nmu1_s390.deb) ...
Selecting previously deselected package debhelper.
-Unpacking debhelper (from .../debhelper_8.1.2_s390.deb) ...
+Unpacking debhelper (from .../debhelper_8.1.3_s390.deb) ...
Selecting previously deselected package cdbs.
Unpacking cdbs (from .../archives/cdbs_0.4.92_s390.deb) ...
Selecting previously deselected package zlib1g-dev.
@@ -190,31 +248,37 @@ Unpacking zlib1g-dev (from .../zlib1g-dev_1%3a1.2.3.4.dfsg-3_s390.deb) ...
Setting up bsdmainutils (8.2.2) ...
update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode.
update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode.
-Setting up groff-base (1.21-4) ...
-Setting up libpipeline1 (1.1.0-1) ...
-Setting up man-db (2.5.9-4) ...
+Setting up groff-base (1.21-5) ...
+Setting up libpipeline1 (1.2.0-1) ...
+Setting up man-db (2.6.0.1-1) ...
Building database of manual pages ...
Setting up libmagic1 (5.04-5) ...
Setting up file (5.04-5) ...
Setting up gettext-base (0.18.1.1-3) ...
Setting up libpcre3 (8.12-3) ...
Setting up libxml2 (2.7.8.dfsg-2) ...
+Setting up libdpkg-perl (1.16.0.1) ...
+Setting up dpkg-dev (1.16.0.1) ...
Setting up html2text (1.3.2a-15) ...
-Setting up libglib2.0-0 (2.28.2-1) ...
+Setting up libglib2.0-0 (2.28.4-1) ...
No schema files found: doing nothing.
Setting up libcroco3 (0.6.2-1) ...
Setting up libunistring0 (0.9.3-3) ...
Setting up gettext (0.18.1.1-3) ...
Setting up intltool-debian (0.35.0+20060710.1) ...
Setting up po-debconf (1.0.16+nmu1) ...
-Setting up debhelper (8.1.2) ...
+Setting up debhelper (8.1.3) ...
Setting up cdbs (0.4.92) ...
Setting up zlib1g-dev (1:1.2.3.4.dfsg-3) ...
Removing negative dependencies:
-Checking correctness of source dependencies...
+Reading package lists...
+Building dependency tree...
+Reading state information...
+0 upgraded, 0 newly installed, 0 to remove and 17 not upgraded.
+Checking correctness of dependencies...
Kernel: Linux 2.6.32-bpo.5-s390x s390 (s390x)
-Toolchain package versions: libc6-dev_2.11.2-11 dpkg-dev_1.15.8.10 linux-libc-dev_2.6.37-2 gcc-4.4_4.4.5-13 g++-4.4_4.4.5-13 binutils_2.21.0.20110302-2 libstdc++6-4.4-dev_4.4.5-13 libstdc++6_4.5.2-5
-Package versions: apt_0.8.12 base-files_6.1 base-passwd_3.5.22 bash_4.1-3 binutils_2.21.0.20110302-2 bsdmainutils_8.2.2 bsdutils_1:2.17.2-9.1 build-essential_11.5 bzip2_1.0.5-6 cdbs_0.4.92 coreutils_8.5-1 cpp_4:4.4.5-4 cpp-4.4_4.4.5-13 dash_0.5.5.1-7.4 debconf_1.5.38 debconf-i18n_1.5.38 debfoster_2.7-1.1 debhelper_8.1.2 debian-archive-keyring_2010.08.28 debianutils_3.4.4 diffutils_1:3.0-1 dpkg_1.15.8.10 dpkg-dev_1.15.8.10 e2fslibs_1.41.12-2 e2fsprogs_1.41.12-2 fakeroot_1.14.5-2 file_5.04-5 findutils_4.4.2-1+b1 g++_4:4.4.5-4 g++-4.4_4.4.5-13 gcc_4:4.4.5-4 gcc-4.4_4.4.5-13 gcc-4.4-base_4.4.5-13 gcc-4.5-base_4.5.2-5 gettext_0.18.1.1-3 gettext-base_0.18.1.1-3 gnupg_1.4.11-3 gpgv_1.4.11-3 grep_2.6.3-3 groff-base_1.21-4 gzip_1.3.12-9 hostname_3.06 html2text_1.3.2a-15 initscripts_2.88dsf-13.1 insserv_1.14.0-2 intltool-debian_0.35.0+20060710.1 libacl1_2.2.49-4 libattr1_1:2.4.44-2 libblkid1_2.17.2-9.1 libbz2-1.0_1.0.5-6 libc-bin_2.11.2-11 libc-dev-bin_2.11.2-11 libc6_2.11.2-11 libc6-dev_2.11.2-11 libcomerr2_1.41.12-2 libcroco3_0.6.2-1 libdb4.7_4.7.25-12 libdb4.8_4.8.30-5 libdpkg-perl_1.15.8.10 libgc1c2_1:7.1-7 libgcc1_1:4.5.2-5 libgdbm3_1.8.3-9 libglib2.0-0_2.28.2-1 libgmp10_2:5.0.1+dfsg-6 libgmp3c2_2:4.3.2+dfsg-1 libgomp1_4.5.2-5 liblocale-gettext-perl_1.05-6 liblzma2_5.0.0-2 libmagic1_5.04-5 libmpfr4_3.0.0-9 libncurses5_5.8+20110307-1 libpam-modules_1.1.2-2 libpam-runtime_1.1.2-2 libpam0g_1.1.2-2 libpcre3_8.12-3 libpipeline1_1.1.0-1 libreadline6_6.1-3 libselinux1_2.0.96-1 libsepol1_2.0.42-1 libslang2_2.2.2-4 libss2_1.41.12-2 libstdc++6_4.5.2-5 libstdc++6-4.4-dev_4.4.5-13 libtext-charwidth-perl_0.04-6 libtext-iconv-perl_1.7-2 libtext-wrapi18n-perl_0.06-7 libtimedate-perl_1.2000-1 libunistring0_0.9.3-3 libusb-0.1-4_2:0.1.12-17 libuuid1_2.17.2-9.1 libxml2_2.7.8.dfsg-2 linux-libc-dev_2.6.37-2 login_1:4.1.4.2+svn3283-3 lsb-base_3.2-27 make_3.81-8 man-db_2.5.9-4 mawk_1.3.3-15 mount_2.17.2-9.1 ncurses-base_5.8+20110307-1 ncurses-bin_5.8+20110307-1 passwd_1:4.1.4.2+svn3283-3 patch_2.6.1-1 perl_5.10.1-17 perl-base_5.10.1-17 perl-modules_5.10.1-17 po-debconf_1.0.16+nmu1 readline-common_6.1-3 sed_4.2.1-9 sensible-utils_0.0.6 sudo_1.7.4p6-1 sysv-rc_2.88dsf-13.1 sysvinit_2.88dsf-13.1 sysvinit-utils_2.88dsf-13.1 tar_1.25-3 tzdata_2011c-1 util-linux_2.17.2-9.1 xz-utils_5.0.0-2 zlib1g_1:1.2.3.4.dfsg-3 zlib1g-dev_1:1.2.3.4.dfsg-3
+Toolchain package versions: binutils_2.21.0.20110327-2 dpkg-dev_1.16.0.1 g++-4.4_4.4.5-15 gcc-4.4_4.4.5-15 libc6-dev_2.11.2-11 libstdc++6_4.6.0-2 libstdc++6-4.4-dev_4.4.5-15 linux-libc-dev_2.6.38-2
+Package versions: apt_0.8.13 base-files_6.1 base-passwd_3.5.22 bash_4.1-3 binutils_2.21.0.20110327-2 bsdmainutils_8.2.2 bsdutils_1:2.17.2-9.1 build-essential_11.5 bzip2_1.0.5-6 cdbs_0.4.92 coreutils_8.5-1 cpp_4:4.4.5-6 cpp-4.4_4.4.5-15 dash_0.5.5.1-7.4 debconf_1.5.38 debconf-english_1.5.38 debfoster_2.7-1.1 debhelper_8.1.3 debian-archive-keyring_2010.08.28 debianutils_3.4.4 diffutils_1:3.0-1 dpkg_1.15.8.10 dpkg-dev_1.16.0.1 e2fslibs_1.41.12-2 e2fsprogs_1.41.12-2 fakeroot_1.15.1-1 file_5.04-5 findutils_4.4.2-1+b1 g++_4:4.4.5-6 g++-4.4_4.4.5-15 gcc_4:4.4.5-6 gcc-4.4_4.4.5-15 gcc-4.4-base_4.4.5-15 gcc-4.5-base_4.5.2-8 gcc-4.6-base_4.6.0-2 gettext_0.18.1.1-3 gettext-base_0.18.1.1-3 gnupg_1.4.11-3 gpgv_1.4.11-3 grep_2.6.3-3 groff-base_1.21-5 gzip_1.3.12-9 hostname_3.06 html2text_1.3.2a-15 initscripts_2.88dsf-13.1 insserv_1.14.0-2.1 intltool-debian_0.35.0+20060710.1 libacl1_2.2.49-4 libattr1_1:2.4.44-2 libblkid1_2.17.2-9.1 libbz2-1.0_1.0.5-6 libc-bin_2.11.2-11 libc-dev-bin_2.11.2-11 libc6_2.11.2-11 libc6-dev_2.11.2-11 libcomerr2_1.41.12-2 libcroco3_0.6.2-1 libdb4.7_4.7.25-12 libdb4.8_4.8.30-5 libdpkg-perl_1.16.0.1 libgc1c2_1:7.1-7 libgcc1_1:4.6.0-2 libgdbm3_1.8.3-9 libglib2.0-0_2.28.4-1 libgmp10_2:5.0.1+dfsg-7 libgomp1_4.6.0-2 liblocale-gettext-perl_1.05-6 liblzma2_5.0.0-2 libmagic1_5.04-5 libmpfr4_3.0.0-9 libncurses5_5.8+20110307-1 libpam-modules_1.1.2-2 libpam-runtime_1.1.2-2 libpam0g_1.1.2-2 libpcre3_8.12-3 libpipeline1_1.2.0-1 libreadline6_6.1-3 libselinux1_2.0.98-1 libsepol1_2.0.42-1 libslang2_2.2.2-4 libss2_1.41.12-2 libstdc++6_4.6.0-2 libstdc++6-4.4-dev_4.4.5-15 libtext-charwidth-perl_0.04-6 libtext-iconv-perl_1.7-2 libtext-wrapi18n-perl_0.06-7 libtimedate-perl_1.2000-1 libunistring0_0.9.3-3 libusb-0.1-4_2:0.1.12-17 libuuid1_2.17.2-9.1 libxml2_2.7.8.dfsg-2 linux-libc-dev_2.6.38-2 login_1:4.1.4.2+svn3283-3 lsb-base_3.2-27 make_3.81-8 man-db_2.6.0.1-1 mawk_1.3.3-15 mount_2.17.2-9.1 ncurses-base_5.8+20110307-1 ncurses-bin_5.8+20110307-1 passwd_1:4.1.4.2+svn3283-3 patch_2.6.1-1 perl_5.10.1-18 perl-base_5.10.1-18 perl-modules_5.10.1-18 po-debconf_1.0.16+nmu1 readline-common_6.1-3 sed_4.2.1-9 sensible-utils_0.0.6 sudo_1.7.4p6-1 sysv-rc_2.88dsf-13.1 sysvinit_2.88dsf-13.1 sysvinit-utils_2.88dsf-13.1 tar_1.25-3 tzdata_2011d-1 util-linux_2.17.2-9.1 xz-utils_5.0.0-2 zlib1g_1:1.2.3.4.dfsg-3 zlib1g-dev_1:1.2.3.4.dfsg-3
┌──────────────────────────────────────────────────────────────────────────────┐
│ Build │
@@ -224,14 +288,14 @@ Package versions: apt_0.8.12 base-files_6.1 base-passwd_3.5.22 bash_4.1-3 binuti
Unpack source
─────────────
-dpkg-source: warning: -sn is not a valid option for Dpkg::Source::Package::V3::quilt
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/Source/Package.pm line 258.
gpgv: keyblock resource `/home/buildd/.gnupg/trustedkeys.gpg': file open error
-gpgv: Signature made Wed Jan 19 13:19:58 2011 UTC using RSA key ID 2295D502
+gpgv: Signature made Tue Apr 12 08:22:29 2011 UTC using RSA key ID 2295D502
gpgv: Can't check signature: public key not found
-dpkg-source: warning: failed to verify signature on ./tabix_0.2.3-1.dsc
-dpkg-source: info: extracting tabix in tabix-0.2.3
-dpkg-source: info: unpacking tabix_0.2.3.orig.tar.bz2
-dpkg-source: info: unpacking tabix_0.2.3-1.debian.tar.gz
+dpkg-source: warning: failed to verify signature on ./tabix_0.2.4-1.dsc
+dpkg-source: info: extracting tabix in tabix-0.2.4
+dpkg-source: info: unpacking tabix_0.2.4.orig.tar.bz2
+dpkg-source: info: unpacking tabix_0.2.4-1.debian.tar.gz
Check disc space
────────────────
@@ -240,47 +304,61 @@ Check disc space
dpkg-buildpackage
─────────────────
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
dpkg-buildpackage: export CFLAGS from dpkg-buildflags (origin: vendor): -g -O2
dpkg-buildpackage: export CPPFLAGS from dpkg-buildflags (origin: vendor):
dpkg-buildpackage: export CXXFLAGS from dpkg-buildflags (origin: vendor): -g -O2
dpkg-buildpackage: export FFLAGS from dpkg-buildflags (origin: vendor): -g -O2
dpkg-buildpackage: export LDFLAGS from dpkg-buildflags (origin: vendor):
dpkg-buildpackage: source package tabix
-dpkg-buildpackage: source version 0.2.3-1
- dpkg-source --before-build tabix-0.2.3
+dpkg-buildpackage: source version 0.2.4-1
+ dpkg-source --before-build tabix-0.2.4
dpkg-buildpackage: host architecture s390
- /usr/bin/fakeroot debian/rules clean
+ fakeroot debian/rules clean
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
test -x debian/rules
dh_testroot
rm -f debian/stamp-makefile-build debian/stamp-makefile-install
/usr/bin/make -C . CFLAGS="-g -O2 -g -O2" CXXFLAGS="-g -O2 -g -O2" CPPFLAGS="" LDFLAGS="" -k clean
-make[1]: Entering directory `/build/buildd-tabix_0.2.3-1-s390-MEAt1b/tabix-0.2.3'
-make[2]: Entering directory `/build/buildd-tabix_0.2.3-1-s390-MEAt1b/tabix-0.2.3'
+make[1]: Entering directory `/build/buildd-tabix_0.2.4-1-s390-yUcvD4/tabix-0.2.4'
+make[2]: Entering directory `/build/buildd-tabix_0.2.4-1-s390-yUcvD4/tabix-0.2.4'
rm -fr gmon.out *.o a.out *.dSYM tabix bgzip *~ *.a tabix.aux tabix.log tabix.pdf *.class libtabix.*.dylib libtabix.so*
-make[2]: Leaving directory `/build/buildd-tabix_0.2.3-1-s390-MEAt1b/tabix-0.2.3'
-make[1]: Leaving directory `/build/buildd-tabix_0.2.3-1-s390-MEAt1b/tabix-0.2.3'
+make[2]: Leaving directory `/build/buildd-tabix_0.2.4-1-s390-yUcvD4/tabix-0.2.4'
+make[1]: Leaving directory `/build/buildd-tabix_0.2.4-1-s390-yUcvD4/tabix-0.2.4'
dh_clean
debian/rules build
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
test -x debian/rules
mkdir -p "."
/usr/share/cdbs/1/rules/buildcore.mk:109: WARNING: DEB_COMPRESS_EXCLUDE is a deprecated variable
/usr/bin/make -C . CFLAGS="-g -O2 -g -O2" CXXFLAGS="-g -O2 -g -O2" CPPFLAGS="" LDFLAGS=""
-make[1]: Entering directory `/build/buildd-tabix_0.2.3-1-s390-MEAt1b/tabix-0.2.3'
-make[2]: Entering directory `/build/buildd-tabix_0.2.3-1-s390-MEAt1b/tabix-0.2.3'
+make[1]: Entering directory `/build/buildd-tabix_0.2.4-1-s390-yUcvD4/tabix-0.2.4'
+make[2]: Entering directory `/build/buildd-tabix_0.2.4-1-s390-yUcvD4/tabix-0.2.4'
gcc -c -g -O2 -g -O2 -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE bgzf.c -o bgzf.o
gcc -c -g -O2 -g -O2 -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE kstring.c -o kstring.o
gcc -c -g -O2 -g -O2 -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE knetfile.c -o knetfile.o
gcc -c -g -O2 -g -O2 -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE index.c -o index.o
-ar -cru libtabix.a bgzf.o kstring.o knetfile.o index.o
+gcc -c -g -O2 -g -O2 -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE bedidx.c -o bedidx.o
+ar -cru libtabix.a bgzf.o kstring.o knetfile.o index.o bedidx.o
gcc -c -g -O2 -g -O2 -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE main.c -o main.o
gcc -g -O2 -g -O2 -o tabix main.o -lm -lz -L. -ltabix
gcc -c -g -O2 -g -O2 -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE bgzip.c -o bgzip.o
gcc -g -O2 -g -O2 -o bgzip bgzip.o bgzf.o knetfile.o -lz
-make[2]: Leaving directory `/build/buildd-tabix_0.2.3-1-s390-MEAt1b/tabix-0.2.3'
-make[1]: Leaving directory `/build/buildd-tabix_0.2.3-1-s390-MEAt1b/tabix-0.2.3'
+make[2]: Leaving directory `/build/buildd-tabix_0.2.4-1-s390-yUcvD4/tabix-0.2.4'
+make[1]: Leaving directory `/build/buildd-tabix_0.2.4-1-s390-yUcvD4/tabix-0.2.4'
touch debian/stamp-makefile-build
DEB_MAKE_CHECK_TARGET unset, not running checks
- /usr/bin/fakeroot debian/rules binary-arch
+ fakeroot debian/rules binary-arch
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
test -x debian/rules
dh_testroot
dh_prep
@@ -322,58 +400,59 @@ dpkg-shlibdeps: warning: dependency on libm.so.6 could be avoided if "debian/tab
dh_gencontrol -ptabix
dh_md5sums -ptabix
dh_builddeb -ptabix
-dpkg-deb: building package `tabix' in `../tabix_0.2.3-1_s390.deb'.
- dpkg-genchanges -B -ms390 Build Daemon (zandonai) <buildd_s390-zandonai at buildd.debian.org> >../tabix_0.2.3-1_s390.changes
+dpkg-deb: building package `tabix' in `../tabix_0.2.4-1_s390.deb'.
+ dpkg-genchanges -B -ms390 Build Daemon (zandonai) <buildd_s390-zandonai at buildd.debian.org> >../tabix_0.2.4-1_s390.changes
dpkg-genchanges: arch-specific upload - not including arch-independent packages
dpkg-genchanges: binary-only upload - not including any source code
- dpkg-source --after-build tabix-0.2.3
+ dpkg-source --after-build tabix-0.2.4
dpkg-buildpackage: binary only upload (no source included)
────────────────────────────────────────────────────────────────────────────────
-Build finished at 20110316-1118
+Build finished at 20110412-0950
-tabix_0.2.3-1_s390.changes:
+tabix_0.2.4-1_s390.changes:
Format: 1.8
-Date: Wed, 19 Jan 2011 22:16:39 +0900
+Date: Tue, 12 Apr 2011 17:15:33 +0900
Source: tabix
Binary: tabix
Architecture: s390
-Version: 0.2.3-1
+Version: 0.2.4-1
Distribution: sid
Urgency: low
Maintainer: s390 Build Daemon (zandonai) <buildd_s390-zandonai at buildd.debian.org>
Changed-By: Charles Plessy <plessy at debian.org>
Description:
tabix - generic indexer for TAB-delimited genome position files
-Closes: 606446
Changes:
- tabix (0.2.3-1) unstable; urgency=low
+ tabix (0.2.4-1) unstable; urgency=low
.
- * Initial release (Closes: #606446)
+ * New upstream release.
+ * Incremented Standards-Version to reflect conformance with Policy 3.9.2
+ (debian/control).
Checksums-Sha1:
- 52d6cce7d32856c41e372c3aad8b69ffa6edbc42 48754 tabix_0.2.3-1_s390.deb
+ b7e1d5ca5e47cbc5eab0d038fad2175906e6666f 54688 tabix_0.2.4-1_s390.deb
Checksums-Sha256:
- 316560e7502dc545775bb3aadd070ea72d4dd6c5255f8735dd5e1f378716cb8b 48754 tabix_0.2.3-1_s390.deb
+ 69250d445aa56fbf15ba67026d8cf4adfc362470a03026a0826db7b297126cb2 54688 tabix_0.2.4-1_s390.deb
Files:
- b78a1fa73e728ff341938339cfa9ee7e 48754 science optional tabix_0.2.3-1_s390.deb
+ 309ca9ad7980c21bc5715bc60bb2c697 54688 science optional tabix_0.2.4-1_s390.deb
┌──────────────────────────────────────────────────────────────────────────────┐
│ Package contents │
└──────────────────────────────────────────────────────────────────────────────┘
-tabix_0.2.3-1_s390.deb
+tabix_0.2.4-1_s390.deb
──────────────────────
new debian package, version 2.0.
- size 48754 bytes: control archive= 958 bytes.
- 777 bytes, 16 lines control
+ size 54688 bytes: control archive= 958 bytes.
+ 784 bytes, 16 lines control
587 bytes, 9 lines md5sums
Package: tabix
- Version: 0.2.3-1
+ Version: 0.2.4-1
Architecture: s390
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
- Installed-Size: 160
- Depends: libc6 (>= 2.7), zlib1g (>= 1:1.1.4)
+ Installed-Size: 168
+ Depends: libc6 (>= 2.7), zlib1g (>= 1:1.2.3.3.dfsg)
Section: science
Priority: optional
Homepage: http://samtools.sourceforge.net/tabix.shtml
@@ -385,25 +464,25 @@ tabix_0.2.3-1_s390.deb
chromosomal coordinates. Fast data retrieval also works over network if an URI
is given as a file name.
-drwxr-xr-x root/root 0 2011-03-16 11:17 ./
-drwxr-xr-x root/root 0 2011-03-16 11:17 ./usr/
-drwxr-xr-x root/root 0 2011-03-16 11:17 ./usr/bin/
--rwxr-xr-x root/root 25516 2011-03-16 11:17 ./usr/bin/bgzip
--rwxr-xr-x root/root 58044 2011-03-16 11:17 ./usr/bin/tabix
-drwxr-xr-x root/root 0 2011-03-16 11:17 ./usr/share/
-drwxr-xr-x root/root 0 2011-03-16 11:17 ./usr/share/man/
-drwxr-xr-x root/root 0 2011-03-16 11:17 ./usr/share/man/man1/
--rw-r--r-- root/root 1716 2011-03-16 11:17 ./usr/share/man/man1/tabix.1.gz
-drwxr-xr-x root/root 0 2011-03-16 11:17 ./usr/share/doc/
-drwxr-xr-x root/root 0 2011-03-16 11:17 ./usr/share/doc/tabix/
--rw-r--r-- root/root 944 2010-12-08 17:38 ./usr/share/doc/tabix/NEWS.gz
--rw-r--r-- root/root 2920 2010-12-08 17:38 ./usr/share/doc/tabix/changelog.gz
--rw-r--r-- root/root 154 2011-01-19 13:16 ./usr/share/doc/tabix/changelog.Debian.gz
--rw-r--r-- root/root 1346 2011-01-19 13:03 ./usr/share/doc/tabix/copyright
-drwxr-xr-x root/root 0 2011-03-16 11:17 ./usr/share/doc/tabix/examples/
+drwxr-xr-x root/root 0 2011-04-12 09:50 ./
+drwxr-xr-x root/root 0 2011-04-12 09:50 ./usr/
+drwxr-xr-x root/root 0 2011-04-12 09:50 ./usr/bin/
+-rwxr-xr-x root/root 25792 2011-04-12 09:50 ./usr/bin/bgzip
+-rwxr-xr-x root/root 67528 2011-04-12 09:50 ./usr/bin/tabix
+drwxr-xr-x root/root 0 2011-04-12 09:50 ./usr/share/
+drwxr-xr-x root/root 0 2011-04-12 09:50 ./usr/share/man/
+drwxr-xr-x root/root 0 2011-04-12 09:50 ./usr/share/man/man1/
+-rw-r--r-- root/root 1834 2011-04-12 09:50 ./usr/share/man/man1/tabix.1.gz
+drwxr-xr-x root/root 0 2011-04-12 09:50 ./usr/share/doc/
+drwxr-xr-x root/root 0 2011-04-12 09:50 ./usr/share/doc/tabix/
+-rw-r--r-- root/root 1169 2011-04-10 19:21 ./usr/share/doc/tabix/NEWS.gz
+-rw-r--r-- root/root 3487 2011-04-10 19:21 ./usr/share/doc/tabix/changelog.gz
+-rw-r--r-- root/root 262 2011-04-12 08:16 ./usr/share/doc/tabix/changelog.Debian.gz
+-rw-r--r-- root/root 1473 2011-04-12 07:17 ./usr/share/doc/tabix/copyright
+drwxr-xr-x root/root 0 2011-04-12 09:50 ./usr/share/doc/tabix/examples/
-rw-r--r-- root/root 3778 2010-12-08 17:34 ./usr/share/doc/tabix/examples/example.gtf.gz
--rw-r--r-- root/root 260 2010-12-08 17:34 ./usr/share/doc/tabix/examples/example.gtf.gz.tbi
-lrwxrwxrwx root/root 0 2011-03-16 11:17 ./usr/share/man/man1/bgzip.1.gz -> tabix.1.gz
+-rw-r--r-- root/root 259 2011-04-10 19:21 ./usr/share/doc/tabix/examples/example.gtf.gz.tbi
+lrwxrwxrwx root/root 0 2011-04-12 09:50 ./usr/share/man/man1/bgzip.1.gz -> tabix.1.gz
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -412,9 +491,31 @@ lrwxrwxrwx root/root 0 2011-03-16 11:17 ./usr/share/man/man1/bgzip.1.gz
Built successfully
────────────────────────────────────────────────────────────────────────────────
-Purging /var/lib/schroot/mount/sid-s390-sbuild-53a260d1-9fe5-40bd-843a-9649610d4668/build/buildd-tabix_0.2.3-1-s390-MEAt1b
-Not removing build depends: cloned chroot in use
-────────────────────────────────────────────────────────────────────────────────
-Finished at 20110316-1118
-Build needed 00:00:57, 1236k disc space
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Post Build │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+Purging /var/lib/schroot/mount/sid-s390-sbuild-84b4c003-4d11-4431-aa2d-bb91400b31ac/build/buildd-tabix_0.2.4-1-s390-yUcvD4
+Not cleaning session: cloned chroot in use
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Summary │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+Architecture: s390
+Build-Space: 1392
+Build-Time: 12
+Distribution: sid
+Install-Time: 22
+Job: tabix_0.2.4-1
+Package: tabix
+Package-Time: 68
+Source-Version: 0.2.4-1
+Space: 1392
+Status: successful
+Version: 0.2.4-1
+────────────────────────────────────────────────────────────────────────────────
+Finished at 20110412-0950
+Build needed 00:01:08, 1392k disc space
+Signature with key '9BD94C88' requested:
diff --git a/sparc.log b/sparc.log
index 3809a28..0509522 100644
--- a/sparc.log
+++ b/sparc.log
@@ -1,69 +1,69 @@
-From buildd at schroeder.debian.org Wed Mar 16 11:19:09 2011
-Return-path: <buildd at schroeder.debian.org>
-Received: from kokkonen.debian.org ([2001:41b8:202:deb:216:35ff:fec4:6340])
+From buildd at lebrun.debian.org Tue Apr 12 09:57:21 2011
+Return-path: <buildd at lebrun.debian.org>
+Received: from merikanto.debian.org ([2001:858:2:2:216:35ff:fec4:a49a])
from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
- CN=kokkonen.debian.org,
- EMAIL=hostmaster at kokkonen.debian.org (verified)
+ CN=merikanto.debian.org,
+ EMAIL=hostmaster at merikanto.debian.org (verified)
by grieg.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
- (Exim 4.69) (envelope-from <buildd at schroeder.debian.org>)
- id 1Pzoku-0005Bc-V4
- for logs at buildd.debian.org; Wed, 16 Mar 2011 11:19:09 +0000
-Received: from schroeder.debian.org ([193.198.184.11])
+ (Exim 4.69) (envelope-from <buildd at lebrun.debian.org>)
+ id 1Q9aLZ-0005bX-9A
+ for logs at buildd.debian.org; Tue, 12 Apr 2011 09:57:21 +0000
+Received: from lebrun.debian.org ([193.198.184.10])
from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
- CN=schroeder.debian.org,
- EMAIL=hostmaster at schroeder.debian.org (verified)
- by kokkonen.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
- (Exim 4.69) (envelope-from <buildd at schroeder.debian.org>)
- id 1Pzoks-0000Ic-QJ
- for logs at buildd.debian.org; Wed, 16 Mar 2011 11:19:07 +0000
-Received: from buildd by schroeder.debian.org with local (Exim 4.69)
- (envelope-from <buildd at schroeder.debian.org>)
- id 1Pzokq-0000ow-Os; Wed, 16 Mar 2011 11:19:04 +0000
-From: buildd on schroeder <buildd at schroeder.debian.org>
-To: logs at buildd.debian.org,buildd-admin at schroeder.debian.org
-Subject: Log for successful build of tabix_0.2.3-1 on sparc (dist=sid)
-Content-Type: text/plain; charset=UTF-8
-Content-Transfer-Encoding: 8bit
-Message-Id: <E1Pzokq-0000ow-Os at schroeder.debian.org>
-Date: Wed, 16 Mar 2011 11:19:04 +0000
+ CN=lebrun.debian.org, EMAIL=hostmaster at lebrun.debian.org (verified)
+ by merikanto.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
+ (Exim 4.72) (envelope-from <buildd at lebrun.debian.org>)
+ id 1Q9aLS-0003HH-L1
+ for logs at buildd.debian.org; Tue, 12 Apr 2011 09:57:14 +0000
+Received: from buildd by lebrun.debian.org with local (Exim 4.69)
+ (envelope-from <buildd at lebrun.debian.org>)
+ id 1Q9aLS-00021S-BT; Tue, 12 Apr 2011 09:57:14 +0000
+MIME-Version: 1.0
+Content-Transfer-Encoding: binary
+X-Mailer: MIME::Lite 3.021 (F2.76; B3.07_01; Q3.07)
+Date: Tue, 12 Apr 2011 09:57:14 +0000
+From: buildd on lebrun <buildd at lebrun.debian.org>
+To: logs at buildd.debian.org,buildd-admin at lebrun.debian.org
+Subject: Log for successful build of tabix_0.2.4-1 on sparc (dist=sid)
+Key-Id: 81587D01
+Message-Id: <E1Q9aLS-00021S-BT at lebrun.debian.org>
Delivered-To: logs at buildd.debian.org
-sbuild (Debian sbuild) 0.60.5 (14 Nov 2010) on schroeder.debian.org
+sbuild (Debian sbuild) 0.61.0 (23 Feb 2011) on lebrun.debian.org
╔══════════════════════════════════════════════════════════════════════════════╗
-║ tabix 0.2.3-1 (sparc) 16 Mar 2011 11:16 ║
+║ tabix 0.2.4-1 (sparc) 12 Apr 2011 09:54 ║
╚══════════════════════════════════════════════════════════════════════════════╝
Package: tabix
-Version: 0.2.3-1
+Version: 0.2.4-1
+Source Version: 0.2.4-1
Architecture: sparc
-Chroot Build Dir: /var/lib/schroot/mount/sid-sparc-sbuild-77bd9883-a269-4415-a022-06f0bfbb5eb1/build/buildd-tabix_0.2.3-1-sparc-7A2Tzh
-Start Time: 20110316-1116
-Get:1 http://ftp.carnet.hr unstable InRelease [147 kB]
-Get:2 http://incoming.debian.org unstable InRelease [147 kB]
-Get:3 http://ftp.carnet.hr unstable/main Sources [4205 kB]
-Get:4 http://ftp.carnet.hr unstable/contrib Sources [38.8 kB]
+Get:1 http://debian.carnet.hr unstable InRelease [151 kB]
+Get:2 http://incoming.debian.org unstable InRelease [151 kB]
+Get:3 http://debian.carnet.hr unstable/main Sources [5265 kB]
+Get:4 http://debian.carnet.hr unstable/contrib Sources [48.2 kB]
Ign http://incoming.debian.org InRelease
-Get:5 http://ftp.carnet.hr unstable/non-free Sources [81.3 kB]
-Get:6 http://incoming.debian.org Release.gpg [835 B]
-Get:7 http://incoming.debian.org Release [1604 B]
-Get:8 http://incoming.debian.org unstable/main Sources [4205 kB]
-Get:9 http://ftp.carnet.hr unstable/main sparc Packages [6874 kB]
-Get:10 http://ftp.carnet.hr unstable/contrib sparc Packages [51.4 kB]
-Ign http://ftp.carnet.hr unstable/contrib TranslationIndex
-Get:11 http://ftp.carnet.hr unstable/main TranslationIndex [2232 B]
-Get:12 http://incoming.debian.org unstable/contrib Sources [38.8 kB]
-Get:13 http://incoming.debian.org unstable/non-free Sources [81.3 kB]
-Get:14 http://incoming.debian.org unstable/main sparc Packages [6874 kB]
-Ign http://ftp.carnet.hr unstable/contrib Translation-en
-Get:15 http://incoming.debian.org unstable/contrib sparc Packages [51.4 kB]
+Get:5 http://incoming.debian.org Release.gpg [836 B]
+Get:6 http://debian.carnet.hr unstable/non-free Sources [97.4 kB]
+Get:7 http://incoming.debian.org unstable/main Sources [5265 kB]
+Get:8 http://debian.carnet.hr unstable/main sparc Packages [7009 kB]
+Get:9 http://debian.carnet.hr unstable/contrib sparc Packages [52.5 kB]
+Ign http://debian.carnet.hr unstable/contrib TranslationIndex
+Get:10 http://debian.carnet.hr unstable/main TranslationIndex [2264 B]
+Get:11 http://incoming.debian.org unstable/contrib Sources [48.2 kB]
+Get:12 http://incoming.debian.org unstable/non-free Sources [97.4 kB]
+Get:13 http://incoming.debian.org unstable/main sparc Packages [7009 kB]
+Get:14 http://incoming.debian.org unstable/contrib sparc Packages [52.5 kB]
Ign http://incoming.debian.org unstable/contrib TranslationIndex
-Get:16 http://incoming.debian.org unstable/main TranslationIndex [2232 B]
-Get:17 http://incoming.debian.org Sources [30.2 kB]
-Get:18 http://incoming.debian.org Packages [416 kB]
-Ign http://incoming.debian.org Translation-en
+Get:15 http://incoming.debian.org unstable/main TranslationIndex [2264 B]
+Get:16 http://incoming.debian.org Release [1604 B]
+Ign http://debian.carnet.hr unstable/contrib Translation-en
+Get:17 http://incoming.debian.org Sources [48.9 kB]
+Get:18 http://incoming.debian.org Packages [773 kB]
Ign http://incoming.debian.org unstable/contrib Translation-en
-Fetched 23.2 MB in 24s (941 kB/s)
+Ign http://incoming.debian.org Translation-en
+Fetched 26.1 MB in 27s (957 kB/s)
Reading package lists...
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -84,80 +84,134 @@ Building dependency tree...
Reading state information...
NOTICE: 'tabix' packaging is maintained in the 'Git' version control system at:
git://git.debian.org/debian-med/tabix.git
-Need to get 50.4 kB of source archives.
-Get:1 http://incoming.debian.org/buildd-unstable/ tabix 0.2.3-1 (dsc) [1882 B]
-Get:2 http://incoming.debian.org/buildd-unstable/ tabix 0.2.3-1 (tar) [46.4 kB]
-Get:3 http://incoming.debian.org/buildd-unstable/ tabix 0.2.3-1 (diff) [2130 B]
-Fetched 50.4 kB in 0s (80.4 kB/s)
+Need to get 58.4 kB of source archives.
+Get:1 http://incoming.debian.org/buildd-unstable/ tabix 0.2.4-1 (dsc) [1882 B]
+Get:2 http://incoming.debian.org/buildd-unstable/ tabix 0.2.4-1 (tar) [54.2 kB]
+Get:3 http://incoming.debian.org/buildd-unstable/ tabix 0.2.4-1 (diff) [2322 B]
+Fetched 58.4 kB in 0s (77.5 kB/s)
Download complete and in download only mode
Check arch
──────────
-** Using build dependencies supplied by package:
-Build-Depends: cdbs, debhelper (>= 8), zlib1g-dev
┌──────────────────────────────────────────────────────────────────────────────┐
-│ Install build dependencies (internal resolver) │
+│ Install core build dependencies (internal resolver) │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+Build-Depends: build-essential, fakeroot
+Checking for already installed dependencies...
+build-essential: already installed (11.5)
+fakeroot: already installed (1.15.1-1)
+Checking for dependency conflicts...
+Installing positive dependencies:
+Reading package lists...
+Building dependency tree...
+Reading state information...
+0 upgraded, 0 newly installed, 0 to remove and 14 not upgraded.
+Removing negative dependencies:
+Reading package lists...
+Building dependency tree...
+Reading state information...
+0 upgraded, 0 newly installed, 0 to remove and 14 not upgraded.
+Checking correctness of dependencies...
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Install tabix build dependencies (internal resolver) │
└──────────────────────────────────────────────────────────────────────────────┘
-Checking for already installed source dependencies...
+Build-Depends: base-files, base-passwd, bash, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, ncurses-base, ncurses-bin, perl-base, sed, login, sysvinit-utils, sysvinit, tar, bsdutils, mount, util-linux, libc6-dev | libc-dev, libc6-dev-sparc64, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), cdbs, debhelper (>= 8), zlib1g-dev
+Checking for already installed dependencies...
+base-files: already installed (6.1)
+base-passwd: already installed (3.5.22+b1)
+bash: already installed (4.1-3)
+coreutils: already installed (8.5-1)
+dash: already installed (0.5.5.1-7.4)
+debianutils: already installed (3.4.4)
+diffutils: already installed (1:3.0-1)
+dpkg: already installed (1.15.8.10)
+e2fsprogs: already installed (1.41.12-2)
+findutils: already installed (4.4.2-1+b2)
+grep: already installed (2.6.3-3)
+gzip: already installed (1.3.12-9)
+hostname: already installed (3.06)
+ncurses-base: already installed (5.8+20110307-1)
+ncurses-bin: already installed (5.8+20110307-1)
+perl-base: already installed (5.10.1-19)
+sed: already installed (4.2.1-9)
+login: already installed (1:4.1.4.2+svn3283-3)
+sysvinit-utils: already installed (2.88dsf-13.1)
+sysvinit: already installed (2.88dsf-13.1)
+tar: already installed (1.25-3)
+bsdutils: already installed (1:2.17.2-9.1)
+mount: already installed (2.17.2-9.1)
+util-linux: already installed (2.17.2-9.1)
+libc6-dev: already installed (2.11.2-11)
+libc6-dev-sparc64: already installed (2.11.2-11)
+gcc: already installed (4:4.4.5-6 >= 4:4.4.3 is satisfied)
+g++: already installed (4:4.4.5-6 >= 4:4.4.3 is satisfied)
+make: already installed (3.81-8)
+dpkg-dev: already installed (1.15.8.10 >= 1.13.5 is satisfied)
cdbs: missing
debhelper: missing
-Using default version 8.1.2
+Using default version 8.1.3
zlib1g-dev: missing
-Checking for source dependency conflicts...
+Checking for dependency conflicts...
Installing positive dependencies: cdbs debhelper zlib1g-dev
Reading package lists...
Building dependency tree...
Reading state information...
The following extra packages will be installed:
- bsdmainutils file gettext gettext-base groff-base html2text intltool-debian
- libcroco3 libglib2.0-0 libmagic1 libpcre3 libpipeline1 libunistring0 libxml2
- man-db po-debconf
+ bsdmainutils dpkg-dev file gettext gettext-base groff-base html2text
+ intltool-debian libcroco3 libdpkg-perl libglib2.0-0 libmagic1 libpcre3
+ libpipeline1 libunistring0 libxml2 man-db po-debconf
Suggested packages:
- wamerican wordlist whois vacation devscripts doc-base dh-make gettext-doc
- groff less www-browser libmail-box-perl
+ wamerican wordlist whois vacation devscripts doc-base dh-make debian-keyring
+ gettext-doc groff less www-browser libmail-box-perl
Recommended packages:
- autotools-dev curl wget lynx-cur autopoint libglib2.0-data shared-mime-info
- xml-core libmail-sendmail-perl
+ autotools-dev libalgorithm-merge-perl curl wget lynx-cur autopoint
+ libglib2.0-data shared-mime-info xml-core libmail-sendmail-perl
The following NEW packages will be installed:
bsdmainutils cdbs debhelper file gettext gettext-base groff-base html2text
intltool-debian libcroco3 libglib2.0-0 libmagic1 libpcre3 libpipeline1
libunistring0 libxml2 man-db po-debconf zlib1g-dev
-0 upgraded, 19 newly installed, 0 to remove and 3 not upgraded.
-Need to get 10.4 MB of archives.
-After this operation, 29.5 MB of additional disk space will be used.
-Get:1 http://ftp.carnet.hr/debian/ unstable/main bsdmainutils sparc 8.2.2 [205 kB]
-Get:2 http://ftp.carnet.hr/debian/ unstable/main groff-base sparc 1.21-4 [1155 kB]
-Get:3 http://ftp.carnet.hr/debian/ unstable/main libpipeline1 sparc 1.1.0-1 [35.0 kB]
-Get:4 http://ftp.carnet.hr/debian/ unstable/main man-db sparc 2.5.9-4 [1007 kB]
-Get:5 http://ftp.carnet.hr/debian/ unstable/main libmagic1 sparc 5.04-5 [239 kB]
-Get:6 http://ftp.carnet.hr/debian/ unstable/main file sparc 5.04-5 [49.5 kB]
-Get:7 http://ftp.carnet.hr/debian/ unstable/main gettext-base sparc 0.18.1.1-3 [140 kB]
-Get:8 http://ftp.carnet.hr/debian/ unstable/main libpcre3 sparc 8.12-3 [265 kB]
-Get:9 http://ftp.carnet.hr/debian/ unstable/main libxml2 sparc 2.7.8.dfsg-2 [840 kB]
-Get:10 http://ftp.carnet.hr/debian/ unstable/main html2text sparc 1.3.2a-15 [100 kB]
-Get:11 http://ftp.carnet.hr/debian/ unstable/main libglib2.0-0 sparc 2.28.2-1 [1550 kB]
-Get:12 http://ftp.carnet.hr/debian/ unstable/main libcroco3 sparc 0.6.2-1 [119 kB]
-Get:13 http://ftp.carnet.hr/debian/ unstable/main libunistring0 sparc 0.9.3-3 [424 kB]
-Get:14 http://ftp.carnet.hr/debian/ unstable/main gettext sparc 0.18.1.1-3 [2006 kB]
-Get:15 http://ftp.carnet.hr/debian/ unstable/main intltool-debian sparc 0.35.0+20060710.1 [30.8 kB]
-Get:16 http://ftp.carnet.hr/debian/ unstable/main po-debconf sparc 1.0.16+nmu1 [223 kB]
-Get:17 http://ftp.carnet.hr/debian/ unstable/main debhelper sparc 8.1.2 [553 kB]
-Get:18 http://ftp.carnet.hr/debian/ unstable/main cdbs sparc 0.4.92 [1268 kB]
-Get:19 http://ftp.carnet.hr/debian/ unstable/main zlib1g-dev sparc 1:1.2.3.4.dfsg-3 [189 kB]
+The following packages will be upgraded:
+ dpkg-dev libdpkg-perl
+2 upgraded, 19 newly installed, 0 to remove and 12 not upgraded.
+Need to get 12.0 MB of archives.
+After this operation, 29.7 MB of additional disk space will be used.
+Get:1 http://debian.carnet.hr/debian/ unstable/main bsdmainutils sparc 8.2.2 [205 kB]
+Get:2 http://debian.carnet.hr/debian/ unstable/main groff-base sparc 1.21-5 [1152 kB]
+Get:3 http://debian.carnet.hr/debian/ unstable/main libpipeline1 sparc 1.2.0-1 [35.8 kB]
+Get:4 http://debian.carnet.hr/debian/ unstable/main man-db sparc 2.6.0.1-1 [1013 kB]
+Get:5 http://debian.carnet.hr/debian/ unstable/main libmagic1 sparc 5.04-5 [239 kB]
+Get:6 http://debian.carnet.hr/debian/ unstable/main file sparc 5.04-5 [49.5 kB]
+Get:7 http://debian.carnet.hr/debian/ unstable/main gettext-base sparc 0.18.1.1-3 [140 kB]
+Get:8 http://debian.carnet.hr/debian/ unstable/main libpcre3 sparc 8.12-3 [265 kB]
+Get:9 http://debian.carnet.hr/debian/ unstable/main libxml2 sparc 2.7.8.dfsg-2 [840 kB]
+Get:10 http://debian.carnet.hr/debian/ unstable/main dpkg-dev sparc 1.16.0.1 [871 kB]
+Get:11 http://debian.carnet.hr/debian/ unstable/main libdpkg-perl sparc 1.16.0.1 [748 kB]
+Get:12 http://debian.carnet.hr/debian/ unstable/main html2text sparc 1.3.2a-15 [100 kB]
+Get:13 http://debian.carnet.hr/debian/ unstable/main libglib2.0-0 sparc 2.28.4-1 [1553 kB]
+Get:14 http://debian.carnet.hr/debian/ unstable/main libcroco3 sparc 0.6.2-1 [119 kB]
+Get:15 http://debian.carnet.hr/debian/ unstable/main libunistring0 sparc 0.9.3-3 [424 kB]
+Get:16 http://debian.carnet.hr/debian/ unstable/main gettext sparc 0.18.1.1-3 [2006 kB]
+Get:17 http://debian.carnet.hr/debian/ unstable/main intltool-debian sparc 0.35.0+20060710.1 [30.8 kB]
+Get:18 http://debian.carnet.hr/debian/ unstable/main po-debconf sparc 1.0.16+nmu1 [223 kB]
+Get:19 http://debian.carnet.hr/debian/ unstable/main debhelper sparc 8.1.3 [554 kB]
+Get:20 http://debian.carnet.hr/debian/ unstable/main cdbs sparc 0.4.92 [1268 kB]
+Get:21 http://debian.carnet.hr/debian/ unstable/main zlib1g-dev sparc 1:1.2.3.4.dfsg-3 [189 kB]
debconf: delaying package configuration, since apt-utils is not installed
-Fetched 10.4 MB in 7s (1379 kB/s)
+Fetched 12.0 MB in 8s (1461 kB/s)
Selecting previously deselected package bsdmainutils.
-(Reading database ... 10484 files and directories currently installed.)
+(Reading database ... 10348 files and directories currently installed.)
Unpacking bsdmainutils (from .../bsdmainutils_8.2.2_sparc.deb) ...
Selecting previously deselected package groff-base.
-Unpacking groff-base (from .../groff-base_1.21-4_sparc.deb) ...
+Unpacking groff-base (from .../groff-base_1.21-5_sparc.deb) ...
Selecting previously deselected package libpipeline1.
-Unpacking libpipeline1 (from .../libpipeline1_1.1.0-1_sparc.deb) ...
+Unpacking libpipeline1 (from .../libpipeline1_1.2.0-1_sparc.deb) ...
Selecting previously deselected package man-db.
-Unpacking man-db (from .../man-db_2.5.9-4_sparc.deb) ...
+Unpacking man-db (from .../man-db_2.6.0.1-1_sparc.deb) ...
Selecting previously deselected package libmagic1.
Unpacking libmagic1 (from .../libmagic1_5.04-5_sparc.deb) ...
Selecting previously deselected package file.
@@ -168,10 +222,14 @@ Selecting previously deselected package libpcre3.
Unpacking libpcre3 (from .../libpcre3_8.12-3_sparc.deb) ...
Selecting previously deselected package libxml2.
Unpacking libxml2 (from .../libxml2_2.7.8.dfsg-2_sparc.deb) ...
+Preparing to replace dpkg-dev 1.15.8.10 (using .../dpkg-dev_1.16.0.1_sparc.deb) ...
+Unpacking replacement dpkg-dev ...
+Preparing to replace libdpkg-perl 1.15.8.10 (using .../libdpkg-perl_1.16.0.1_sparc.deb) ...
+Unpacking replacement libdpkg-perl ...
Selecting previously deselected package html2text.
Unpacking html2text (from .../html2text_1.3.2a-15_sparc.deb) ...
Selecting previously deselected package libglib2.0-0.
-Unpacking libglib2.0-0 (from .../libglib2.0-0_2.28.2-1_sparc.deb) ...
+Unpacking libglib2.0-0 (from .../libglib2.0-0_2.28.4-1_sparc.deb) ...
Selecting previously deselected package libcroco3.
Unpacking libcroco3 (from .../libcroco3_0.6.2-1_sparc.deb) ...
Selecting previously deselected package libunistring0.
@@ -183,7 +241,7 @@ Unpacking intltool-debian (from .../intltool-debian_0.35.0+20060710.1_sparc.deb)
Selecting previously deselected package po-debconf.
Unpacking po-debconf (from .../po-debconf_1.0.16+nmu1_sparc.deb) ...
Selecting previously deselected package debhelper.
-Unpacking debhelper (from .../debhelper_8.1.2_sparc.deb) ...
+Unpacking debhelper (from .../debhelper_8.1.3_sparc.deb) ...
Selecting previously deselected package cdbs.
Unpacking cdbs (from .../archives/cdbs_0.4.92_sparc.deb) ...
Selecting previously deselected package zlib1g-dev.
@@ -191,31 +249,37 @@ Unpacking zlib1g-dev (from .../zlib1g-dev_1%3a1.2.3.4.dfsg-3_sparc.deb) ...
Setting up bsdmainutils (8.2.2) ...
update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode.
update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode.
-Setting up groff-base (1.21-4) ...
-Setting up libpipeline1 (1.1.0-1) ...
-Setting up man-db (2.5.9-4) ...
+Setting up groff-base (1.21-5) ...
+Setting up libpipeline1 (1.2.0-1) ...
+Setting up man-db (2.6.0.1-1) ...
Building database of manual pages ...
Setting up libmagic1 (5.04-5) ...
Setting up file (5.04-5) ...
Setting up gettext-base (0.18.1.1-3) ...
Setting up libpcre3 (8.12-3) ...
Setting up libxml2 (2.7.8.dfsg-2) ...
+Setting up libdpkg-perl (1.16.0.1) ...
+Setting up dpkg-dev (1.16.0.1) ...
Setting up html2text (1.3.2a-15) ...
-Setting up libglib2.0-0 (2.28.2-1) ...
+Setting up libglib2.0-0 (2.28.4-1) ...
No schema files found: doing nothing.
Setting up libcroco3 (0.6.2-1) ...
Setting up libunistring0 (0.9.3-3) ...
Setting up gettext (0.18.1.1-3) ...
Setting up intltool-debian (0.35.0+20060710.1) ...
Setting up po-debconf (1.0.16+nmu1) ...
-Setting up debhelper (8.1.2) ...
+Setting up debhelper (8.1.3) ...
Setting up cdbs (0.4.92) ...
Setting up zlib1g-dev (1:1.2.3.4.dfsg-3) ...
Removing negative dependencies:
-Checking correctness of source dependencies...
+Reading package lists...
+Building dependency tree...
+Reading state information...
+0 upgraded, 0 newly installed, 0 to remove and 12 not upgraded.
+Checking correctness of dependencies...
Kernel: Linux 2.6.32-bpo.5-sparc64-smp sparc (sparc64)
-Toolchain package versions: libc6-dev_2.11.2-11 dpkg-dev_1.15.8.10 linux-libc-dev_2.6.37-2 gcc-4.4_4.4.5-14 g++-4.4_4.4.5-14 binutils_2.21.0.20110302-2 libstdc++6-4.4-dev_4.4.5-14 libstdc++6_4.5.2-6
-Package versions: apt_0.8.12 base-files_6.1 base-passwd_3.5.22+b1 bash_4.1-3 binutils_2.21.0.20110302-2 bsdmainutils_8.2.2 bsdutils_1:2.17.2-9.1 build-essential_11.5 bzip2_1.0.5-6 cdbs_0.4.92 coreutils_8.5-1 cpp_4:4.4.5-4 cpp-4.4_4.4.5-14 dash_0.5.5.1-7.4 debconf_1.5.38 debconf-i18n_1.5.38 debfoster_2.7-1.1 debhelper_8.1.2 debian-archive-keyring_2010.08.28 debianutils_3.4.4 diffutils_1:3.0-1 dpkg_1.15.8.10 dpkg-dev_1.15.8.10 e2fslibs_1.41.12-2 e2fsprogs_1.41.12-2 fakeroot_1.14.5-2 file_5.04-5 findutils_4.4.2-1+b2 g++_4:4.4.5-4 g++-4.4_4.4.5-14 gcc_4:4.4.5-4 gcc-4.4_4.4.5-14 gcc-4.4-base_4.4.5-14 gcc-4.5-base_4.5.2-6 gettext_0.18.1.1-3 gettext-base_0.18.1.1-3 gnupg_1.4.11-3 gpgv_1.4.11-3 grep_2.6.3-3 groff-base_1.21-4 gzip_1.3.12-9 hostname_3.06 html2text_1.3.2a-15 initscripts_2.88dsf-13.1 insserv_1.14.0-2 intltool-debian_0.35.0+20060710.1 libacl1_2.2.49-4 libattr1_1:2.4.44-2 libblkid1_2.17.2-9.1 libbz2-1.0_1.0.5-6 libc-bin_2.11.2-11 libc-dev-bin_2.11.2-11 libc6_2.11.2-11 libc6-dev_2.11.2-11 libc6-dev-sparc64_2.11.2-11 libc6-sparc64_2.11.2-11 libcomerr2_1.41.12-2 libcroco3_0.6.2-1 libdb4.7_4.7.25-12 libdb4.8_4.8.30-4 libdpkg-perl_1.15.8.10 libgc1c2_1:7.1-7 libgcc1_1:4.5.2-6 libgdbm3_1.8.3-9+b1 libglib2.0-0_2.28.2-1 libgmp10_2:5.0.1+dfsg-6 libgomp1_4.5.2-6 liblocale-gettext-perl_1.05-6+b1 liblzma2_5.0.0-2 libmagic1_5.04-5 libmpfr4_3.0.0-9 libncurses5_5.8+20110307-1 libpam-modules_1.1.2-2 libpam-runtime_1.1.2-2 libpam0g_1.1.2-2 libpcre3_8.12-3 libpipeline1_1.1.0-1 libreadline6_6.1-3 libselinux1_2.0.96-1 libsepol1_2.0.42-1 libss2_1.41.12-2 libstdc++6_4.5.2-6 libstdc++6-4.4-dev_4.4.5-14 libtext-charwidth-perl_0.04-6+b1 libtext-iconv-perl_1.7-2+b1 libtext-wrapi18n-perl_0.06-7 libtimedate-perl_1.2000-1 libunistring0_0.9.3-3 libusb-0.1-4_2:0.1.12-17 libuuid1_2.17.2-9.1 libxml2_2.7.8.dfsg-2 linux-libc-dev_2.6.37-2 login_1:4.1.4.2+svn3283-3 lsb-base_3.2-27 make_3.81-8 man-db_2.5.9-4 mawk_1.3.3-15+b1 mount_2.17.2-9.1 ncurses-base_5.8+20110307-1 ncurses-bin_5.8+20110307-1 passwd_1:4.1.4.2+svn3283-3 patch_2.6.1-1 perl_5.10.1-17 perl-base_5.10.1-17 perl-modules_5.10.1-17 po-debconf_1.0.16+nmu1 readline-common_6.1-3 sed_4.2.1-9 sensible-utils_0.0.6 sudo_1.7.4p6-1 sysv-rc_2.88dsf-13.1 sysvinit_2.88dsf-13.1 sysvinit-utils_2.88dsf-13.1 tar_1.25-3 tzdata_2011d-1 util-linux_2.17.2-9.1 xz-utils_5.0.0-2 zlib1g_1:1.2.3.4.dfsg-3 zlib1g-dev_1:1.2.3.4.dfsg-3
+Toolchain package versions: binutils_2.21.0.20110327-2 dpkg-dev_1.16.0.1 g++-4.4_4.4.5-15 gcc-4.4_4.4.5-15 libc6-dev_2.11.2-11 libstdc++6_4.6.0-2 libstdc++6-4.4-dev_4.4.5-15 linux-libc-dev_2.6.38-2
+Package versions: apt_0.8.13 base-files_6.1 base-passwd_3.5.22+b1 bash_4.1-3 binutils_2.21.0.20110327-2 bsdmainutils_8.2.2 bsdutils_1:2.17.2-9.1 build-essential_11.5 bzip2_1.0.5-6 cdbs_0.4.92 coreutils_8.5-1 cpp_4:4.4.5-6 cpp-4.4_4.4.5-15 dash_0.5.5.1-7.4 debconf_1.5.38 debconf-english_1.5.38 debfoster_2.7-1.1 debhelper_8.1.3 debian-archive-keyring_2010.08.28 debianutils_3.4.4 diffutils_1:3.0-1 dpkg_1.15.8.10 dpkg-dev_1.16.0.1 e2fslibs_1.41.12-2 e2fsprogs_1.41.12-2 fakeroot_1.15.1-1 file_5.04-5 findutils_4.4.2-1+b2 g++_4:4.4.5-6 g++-4.4_4.4.5-15 gcc_4:4.4.5-6 gcc-4.4_4.4.5-15 gcc-4.4-base_4.4.5-15 gcc-4.6-base_4.6.0-2 gettext_0.18.1.1-3 gettext-base_0.18.1.1-3 gnupg_1.4.11-3 gpgv_1.4.11-3 grep_2.6.3-3 groff-base_1.21-5 gzip_1.3.12-9 hostname_3.06 html2text_1.3.2a-15 initscripts_2.88dsf-13.1 insserv_1.14.0-2.1 intltool-debian_0.35.0+20060710.1 libacl1_2.2.49-4 libattr1_1:2.4.44-2 libblkid1_2.17.2-9.1 libbz2-1.0_1.0.5-6 libc-bin_2.11.2-11 libc-dev-bin_2.11.2-11 libc6_2.11.2-11 libc6-dev_2.11.2-11 libc6-dev-sparc64_2.11.2-11 libc6-sparc64_2.11.2-11 libcomerr2_1.41.12-2 libcroco3_0.6.2-1 libdb4.7_4.7.25-12 libdb4.8_4.8.30-4 libdpkg-perl_1.16.0.1 libgc1c2_1:7.1-7 libgcc1_1:4.6.0-2 libgdbm3_1.8.3-9+b1 libglib2.0-0_2.28.4-1 libgmp10_2:5.0.1+dfsg-7 libgomp1_4.6.0-2 liblzma2_5.0.0-2 libmagic1_5.04-5 libmpfr4_3.0.0-9 libncurses5_5.8+20110307-1 libpam-modules_1.1.2-2 libpam-runtime_1.1.2-2 libpam0g_1.1.2-2 libpcre3_8.12-3 libpipeline1_1.2.0-1 libreadline6_6.1-3 libselinux1_2.0.98-1 libsepol1_2.0.42-1 libss2_1.41.12-2 libstdc++6_4.6.0-2 libstdc++6-4.4-dev_4.4.5-15 libtimedate-perl_1.2000-1 libunistring0_0.9.3-3 libusb-0.1-4_2:0.1.12-17 libuuid1_2.17.2-9.1 libxml2_2.7.8.dfsg-2 linux-libc-dev_2.6.38-2 login_1:4.1.4.2+svn3283-3 lsb-base_3.2-27 make_3.81-8 man-db_2.6.0.1-1 mawk_1.3.3-15+b1 mount_2.17.2-9.1 ncurses-base_5.8+20110307-1 ncurses-bin_5.8+20110307-1 passwd_1:4.1.4.2+svn3283-3 patch_2.6.1-1 perl_5.10.1-19 perl-base_5.10.1-19 perl-modules_5.10.1-19 po-debconf_1.0.16+nmu1 readline-common_6.1-3 sed_4.2.1-9 sensible-utils_0.0.6 sudo_1.7.4p6-1 sysv-rc_2.88dsf-13.1 sysvinit_2.88dsf-13.1 sysvinit-utils_2.88dsf-13.1 tar_1.25-3 tzdata_2011e-1 util-linux_2.17.2-9.1 xz-utils_5.0.0-2 zlib1g_1:1.2.3.4.dfsg-3 zlib1g-dev_1:1.2.3.4.dfsg-3
┌──────────────────────────────────────────────────────────────────────────────┐
│ Build │
@@ -225,14 +289,14 @@ Package versions: apt_0.8.12 base-files_6.1 base-passwd_3.5.22+b1 bash_4.1-3 bin
Unpack source
─────────────
-dpkg-source: warning: -sn is not a valid option for Dpkg::Source::Package::V3::quilt
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/Source/Package.pm line 258.
gpgv: keyblock resource `/home/buildd/.gnupg/trustedkeys.gpg': file open error
-gpgv: Signature made Wed Jan 19 13:19:58 2011 UTC using RSA key ID 2295D502
+gpgv: Signature made Tue Apr 12 08:22:29 2011 UTC using RSA key ID 2295D502
gpgv: Can't check signature: public key not found
-dpkg-source: warning: failed to verify signature on ./tabix_0.2.3-1.dsc
-dpkg-source: info: extracting tabix in tabix-0.2.3
-dpkg-source: info: unpacking tabix_0.2.3.orig.tar.bz2
-dpkg-source: info: unpacking tabix_0.2.3-1.debian.tar.gz
+dpkg-source: warning: failed to verify signature on ./tabix_0.2.4-1.dsc
+dpkg-source: info: extracting tabix in tabix-0.2.4
+dpkg-source: info: unpacking tabix_0.2.4.orig.tar.bz2
+dpkg-source: info: unpacking tabix_0.2.4-1.debian.tar.gz
Check disc space
────────────────
@@ -241,47 +305,61 @@ Check disc space
dpkg-buildpackage
─────────────────
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
dpkg-buildpackage: export CFLAGS from dpkg-buildflags (origin: vendor): -g -O2
dpkg-buildpackage: export CPPFLAGS from dpkg-buildflags (origin: vendor):
dpkg-buildpackage: export CXXFLAGS from dpkg-buildflags (origin: vendor): -g -O2
dpkg-buildpackage: export FFLAGS from dpkg-buildflags (origin: vendor): -g -O2
dpkg-buildpackage: export LDFLAGS from dpkg-buildflags (origin: vendor):
dpkg-buildpackage: source package tabix
-dpkg-buildpackage: source version 0.2.3-1
- dpkg-source --before-build tabix-0.2.3
+dpkg-buildpackage: source version 0.2.4-1
+ dpkg-source --before-build tabix-0.2.4
dpkg-buildpackage: host architecture sparc
- /usr/bin/fakeroot debian/rules clean
+ fakeroot debian/rules clean
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
test -x debian/rules
dh_testroot
rm -f debian/stamp-makefile-build debian/stamp-makefile-install
/usr/bin/make -C . CFLAGS="-g -O2 -g -O2" CXXFLAGS="-g -O2 -g -O2" CPPFLAGS="" LDFLAGS="" -k clean
-make[1]: Entering directory `/build/buildd-tabix_0.2.3-1-sparc-7A2Tzh/tabix-0.2.3'
-make[2]: Entering directory `/build/buildd-tabix_0.2.3-1-sparc-7A2Tzh/tabix-0.2.3'
+make[1]: Entering directory `/build/buildd-tabix_0.2.4-1-sparc-uziF9b/tabix-0.2.4'
+make[2]: Entering directory `/build/buildd-tabix_0.2.4-1-sparc-uziF9b/tabix-0.2.4'
rm -fr gmon.out *.o a.out *.dSYM tabix bgzip *~ *.a tabix.aux tabix.log tabix.pdf *.class libtabix.*.dylib libtabix.so*
-make[2]: Leaving directory `/build/buildd-tabix_0.2.3-1-sparc-7A2Tzh/tabix-0.2.3'
-make[1]: Leaving directory `/build/buildd-tabix_0.2.3-1-sparc-7A2Tzh/tabix-0.2.3'
+make[2]: Leaving directory `/build/buildd-tabix_0.2.4-1-sparc-uziF9b/tabix-0.2.4'
+make[1]: Leaving directory `/build/buildd-tabix_0.2.4-1-sparc-uziF9b/tabix-0.2.4'
dh_clean
debian/rules build
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
test -x debian/rules
mkdir -p "."
/usr/share/cdbs/1/rules/buildcore.mk:109: WARNING: DEB_COMPRESS_EXCLUDE is a deprecated variable
/usr/bin/make -C . CFLAGS="-g -O2 -g -O2" CXXFLAGS="-g -O2 -g -O2" CPPFLAGS="" LDFLAGS=""
-make[1]: Entering directory `/build/buildd-tabix_0.2.3-1-sparc-7A2Tzh/tabix-0.2.3'
-make[2]: Entering directory `/build/buildd-tabix_0.2.3-1-sparc-7A2Tzh/tabix-0.2.3'
+make[1]: Entering directory `/build/buildd-tabix_0.2.4-1-sparc-uziF9b/tabix-0.2.4'
+make[2]: Entering directory `/build/buildd-tabix_0.2.4-1-sparc-uziF9b/tabix-0.2.4'
gcc -c -g -O2 -g -O2 -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE bgzf.c -o bgzf.o
gcc -c -g -O2 -g -O2 -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE kstring.c -o kstring.o
gcc -c -g -O2 -g -O2 -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE knetfile.c -o knetfile.o
gcc -c -g -O2 -g -O2 -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE index.c -o index.o
-ar -cru libtabix.a bgzf.o kstring.o knetfile.o index.o
+gcc -c -g -O2 -g -O2 -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE bedidx.c -o bedidx.o
+ar -cru libtabix.a bgzf.o kstring.o knetfile.o index.o bedidx.o
gcc -c -g -O2 -g -O2 -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE main.c -o main.o
gcc -g -O2 -g -O2 -o tabix main.o -lm -lz -L. -ltabix
gcc -c -g -O2 -g -O2 -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE bgzip.c -o bgzip.o
gcc -g -O2 -g -O2 -o bgzip bgzip.o bgzf.o knetfile.o -lz
-make[2]: Leaving directory `/build/buildd-tabix_0.2.3-1-sparc-7A2Tzh/tabix-0.2.3'
-make[1]: Leaving directory `/build/buildd-tabix_0.2.3-1-sparc-7A2Tzh/tabix-0.2.3'
+make[2]: Leaving directory `/build/buildd-tabix_0.2.4-1-sparc-uziF9b/tabix-0.2.4'
+make[1]: Leaving directory `/build/buildd-tabix_0.2.4-1-sparc-uziF9b/tabix-0.2.4'
touch debian/stamp-makefile-build
DEB_MAKE_CHECK_TARGET unset, not running checks
- /usr/bin/fakeroot debian/rules binary-arch
+ fakeroot debian/rules binary-arch
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
test -x debian/rules
dh_testroot
dh_prep
@@ -323,58 +401,59 @@ dpkg-shlibdeps: warning: dependency on libm.so.6 could be avoided if "debian/tab
dh_gencontrol -ptabix
dh_md5sums -ptabix
dh_builddeb -ptabix
-dpkg-deb: building package `tabix' in `../tabix_0.2.3-1_sparc.deb'.
- dpkg-genchanges -B -msparc Build Daemon (schroeder) <buildd_sparc-schroeder at buildd.debian.org> >../tabix_0.2.3-1_sparc.changes
+dpkg-deb: building package `tabix' in `../tabix_0.2.4-1_sparc.deb'.
+ dpkg-genchanges -B -msparc Build Daemon (lebrun) <buildd_sparc-lebrun at buildd.debian.org> >../tabix_0.2.4-1_sparc.changes
dpkg-genchanges: arch-specific upload - not including arch-independent packages
dpkg-genchanges: binary-only upload - not including any source code
- dpkg-source --after-build tabix-0.2.3
+ dpkg-source --after-build tabix-0.2.4
dpkg-buildpackage: binary only upload (no source included)
────────────────────────────────────────────────────────────────────────────────
-Build finished at 20110316-1118
+Build finished at 20110412-0957
-tabix_0.2.3-1_sparc.changes:
+tabix_0.2.4-1_sparc.changes:
Format: 1.8
-Date: Wed, 19 Jan 2011 22:16:39 +0900
+Date: Tue, 12 Apr 2011 17:15:33 +0900
Source: tabix
Binary: tabix
Architecture: sparc
-Version: 0.2.3-1
+Version: 0.2.4-1
Distribution: sid
Urgency: low
-Maintainer: sparc Build Daemon (schroeder) <buildd_sparc-schroeder at buildd.debian.org>
+Maintainer: sparc Build Daemon (lebrun) <buildd_sparc-lebrun at buildd.debian.org>
Changed-By: Charles Plessy <plessy at debian.org>
Description:
tabix - generic indexer for TAB-delimited genome position files
-Closes: 606446
Changes:
- tabix (0.2.3-1) unstable; urgency=low
+ tabix (0.2.4-1) unstable; urgency=low
.
- * Initial release (Closes: #606446)
+ * New upstream release.
+ * Incremented Standards-Version to reflect conformance with Policy 3.9.2
+ (debian/control).
Checksums-Sha1:
- 476d702f752491401128dc84bb55a6dc32c50e2d 47404 tabix_0.2.3-1_sparc.deb
+ 3049b66438e66cf679d29aa3b5321bccb7aa76ea 56156 tabix_0.2.4-1_sparc.deb
Checksums-Sha256:
- b525bdd8145fdac2903be0a7aacf12f3091b4204d6a3bd89eca5fcb8938e5da0 47404 tabix_0.2.3-1_sparc.deb
+ 93c3325294d301421fe4ed51dae2ad068754506d87c28843b0379647fb612216 56156 tabix_0.2.4-1_sparc.deb
Files:
- 991f629c571674d4d3daaed14e89be34 47404 science optional tabix_0.2.3-1_sparc.deb
+ d4f9687d9e73124ac15a844a2c13087d 56156 science optional tabix_0.2.4-1_sparc.deb
┌──────────────────────────────────────────────────────────────────────────────┐
│ Package contents │
└──────────────────────────────────────────────────────────────────────────────┘
-tabix_0.2.3-1_sparc.deb
+tabix_0.2.4-1_sparc.deb
───────────────────────
new debian package, version 2.0.
- size 47404 bytes: control archive= 954 bytes.
- 778 bytes, 16 lines control
+ size 56156 bytes: control archive= 957 bytes.
+ 785 bytes, 16 lines control
587 bytes, 9 lines md5sums
Package: tabix
- Version: 0.2.3-1
+ Version: 0.2.4-1
Architecture: sparc
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
- Installed-Size: 152
- Depends: libc6 (>= 2.7), zlib1g (>= 1:1.1.4)
+ Installed-Size: 160
+ Depends: libc6 (>= 2.7), zlib1g (>= 1:1.2.3.3.dfsg)
Section: science
Priority: optional
Homepage: http://samtools.sourceforge.net/tabix.shtml
@@ -386,25 +465,25 @@ tabix_0.2.3-1_sparc.deb
chromosomal coordinates. Fast data retrieval also works over network if an URI
is given as a file name.
-drwxr-xr-x root/root 0 2011-03-16 11:18 ./
-drwxr-xr-x root/root 0 2011-03-16 11:18 ./usr/
-drwxr-xr-x root/root 0 2011-03-16 11:18 ./usr/bin/
--rwxr-xr-x root/root 22344 2011-03-16 11:18 ./usr/bin/bgzip
--rwxr-xr-x root/root 53872 2011-03-16 11:18 ./usr/bin/tabix
-drwxr-xr-x root/root 0 2011-03-16 11:18 ./usr/share/
-drwxr-xr-x root/root 0 2011-03-16 11:18 ./usr/share/man/
-drwxr-xr-x root/root 0 2011-03-16 11:18 ./usr/share/man/man1/
--rw-r--r-- root/root 1716 2011-03-16 11:18 ./usr/share/man/man1/tabix.1.gz
-drwxr-xr-x root/root 0 2011-03-16 11:18 ./usr/share/doc/
-drwxr-xr-x root/root 0 2011-03-16 11:18 ./usr/share/doc/tabix/
--rw-r--r-- root/root 2920 2010-12-08 17:38 ./usr/share/doc/tabix/changelog.gz
--rw-r--r-- root/root 1346 2011-01-19 13:03 ./usr/share/doc/tabix/copyright
--rw-r--r-- root/root 154 2011-01-19 13:16 ./usr/share/doc/tabix/changelog.Debian.gz
--rw-r--r-- root/root 944 2010-12-08 17:38 ./usr/share/doc/tabix/NEWS.gz
-drwxr-xr-x root/root 0 2011-03-16 11:18 ./usr/share/doc/tabix/examples/
+drwxr-xr-x root/root 0 2011-04-12 09:56 ./
+drwxr-xr-x root/root 0 2011-04-12 09:56 ./usr/
+drwxr-xr-x root/root 0 2011-04-12 09:56 ./usr/bin/
+-rwxr-xr-x root/root 62400 2011-04-12 09:56 ./usr/bin/tabix
+-rwxr-xr-x root/root 22664 2011-04-12 09:56 ./usr/bin/bgzip
+drwxr-xr-x root/root 0 2011-04-12 09:56 ./usr/share/
+drwxr-xr-x root/root 0 2011-04-12 09:56 ./usr/share/doc/
+drwxr-xr-x root/root 0 2011-04-12 09:56 ./usr/share/doc/tabix/
+-rw-r--r-- root/root 1169 2011-04-10 19:21 ./usr/share/doc/tabix/NEWS.gz
+-rw-r--r-- root/root 1473 2011-04-12 07:17 ./usr/share/doc/tabix/copyright
+-rw-r--r-- root/root 3487 2011-04-10 19:21 ./usr/share/doc/tabix/changelog.gz
+-rw-r--r-- root/root 262 2011-04-12 08:16 ./usr/share/doc/tabix/changelog.Debian.gz
+drwxr-xr-x root/root 0 2011-04-12 09:56 ./usr/share/doc/tabix/examples/
+-rw-r--r-- root/root 259 2011-04-10 19:21 ./usr/share/doc/tabix/examples/example.gtf.gz.tbi
-rw-r--r-- root/root 3778 2010-12-08 17:34 ./usr/share/doc/tabix/examples/example.gtf.gz
--rw-r--r-- root/root 260 2010-12-08 17:34 ./usr/share/doc/tabix/examples/example.gtf.gz.tbi
-lrwxrwxrwx root/root 0 2011-03-16 11:18 ./usr/share/man/man1/bgzip.1.gz -> tabix.1.gz
+drwxr-xr-x root/root 0 2011-04-12 09:56 ./usr/share/man/
+drwxr-xr-x root/root 0 2011-04-12 09:56 ./usr/share/man/man1/
+-rw-r--r-- root/root 1834 2011-04-12 09:56 ./usr/share/man/man1/tabix.1.gz
+lrwxrwxrwx root/root 0 2011-04-12 09:56 ./usr/share/man/man1/bgzip.1.gz -> tabix.1.gz
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -413,9 +492,31 @@ lrwxrwxrwx root/root 0 2011-03-16 11:18 ./usr/share/man/man1/bgzip.1.gz
Built successfully
────────────────────────────────────────────────────────────────────────────────
-Purging /var/lib/schroot/mount/sid-sparc-sbuild-77bd9883-a269-4415-a022-06f0bfbb5eb1/build/buildd-tabix_0.2.3-1-sparc-7A2Tzh
-Not removing build depends: cloned chroot in use
-────────────────────────────────────────────────────────────────────────────────
-Finished at 20110316-1118
-Build needed 00:02:19, 1152k disc space
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Post Build │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+Purging /var/lib/schroot/mount/sid-sparc-sbuild-812028c8-6a30-4b30-a3fe-cb6a39cc8d5e/build/buildd-tabix_0.2.4-1-sparc-uziF9b
+Not cleaning session: cloned chroot in use
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Summary │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+Architecture: sparc
+Build-Space: 1296
+Build-Time: 35
+Distribution: sid
+Install-Time: 76
+Job: tabix_0.2.4-1
+Package: tabix
+Package-Time: 163
+Source-Version: 0.2.4-1
+Space: 1296
+Status: successful
+Version: 0.2.4-1
+────────────────────────────────────────────────────────────────────────────────
+Finished at 20110412-0957
+Build needed 00:02:43, 1296k disc space
+Signature with key '81587D01' requested:
--
Generic indexer for TAB-delimited genome position files.
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