[med-svn] r6803 - in trunk/packages/ncbi-blast-plus/trunk/debian: . legacy

[olivier sallou]

Author: osallou-guest
Date: 2011-05-10 08:03:11 +0000 (Tue, 10 May 2011)
New Revision: 6803

Added:
   trunk/packages/ncbi-blast-plus/trunk/debian/legacy/
   trunk/packages/ncbi-blast-plus/trunk/debian/legacy/legacy.sh
Modified:
   trunk/packages/ncbi-blast-plus/trunk/debian/control
   trunk/packages/ncbi-blast-plus/trunk/debian/ncbi-blast+-legacy.dirs
   trunk/packages/ncbi-blast-plus/trunk/debian/ncbi-blast+-legacy.links
   trunk/packages/ncbi-blast-plus/trunk/debian/rules
Log:
move to use/share legacy files

Modified: trunk/packages/ncbi-blast-plus/trunk/debian/control
===================================================================
--- trunk/packages/ncbi-blast-plus/trunk/debian/control	2011-05-10 07:36:20 UTC (rev 6802)
+++ trunk/packages/ncbi-blast-plus/trunk/debian/control	2011-05-10 08:03:11 UTC (rev 6803)
@@ -35,5 +35,5 @@
  This package adds some fake scripts to call NCBI+ programs
  with the NCBI blast command line. It makes use of the
  legacy_blast.pl script in ncbi-blast+ package.
- To use those scripts, /var/lib/ncbi-blast+/bin must be added
+ To use those scripts, /usr/share/ncbi-blast+/bin must be added
  to the PATH.

Added: trunk/packages/ncbi-blast-plus/trunk/debian/legacy/legacy.sh
===================================================================
--- trunk/packages/ncbi-blast-plus/trunk/debian/legacy/legacy.sh	                        (rev 0)
+++ trunk/packages/ncbi-blast-plus/trunk/debian/legacy/legacy.sh	2011-05-10 08:03:11 UTC (rev 6803)
@@ -0,0 +1,4 @@
+#!/bin/sh
+
+# Execute legacy blast 
+legacy_blast.pl ${0##*/} $@


Property changes on: trunk/packages/ncbi-blast-plus/trunk/debian/legacy/legacy.sh
___________________________________________________________________
Added: svn:executable
   + *

Modified: trunk/packages/ncbi-blast-plus/trunk/debian/ncbi-blast+-legacy.dirs
===================================================================
--- trunk/packages/ncbi-blast-plus/trunk/debian/ncbi-blast+-legacy.dirs	2011-05-10 07:36:20 UTC (rev 6802)
+++ trunk/packages/ncbi-blast-plus/trunk/debian/ncbi-blast+-legacy.dirs	2011-05-10 08:03:11 UTC (rev 6803)
@@ -1 +1 @@
-/var/lib/ncbi-blast+/bin
+/usr/share/ncbi-blast+/bin

Modified: trunk/packages/ncbi-blast-plus/trunk/debian/ncbi-blast+-legacy.links
===================================================================
--- trunk/packages/ncbi-blast-plus/trunk/debian/ncbi-blast+-legacy.links	2011-05-10 07:36:20 UTC (rev 6802)
+++ trunk/packages/ncbi-blast-plus/trunk/debian/ncbi-blast+-legacy.links	2011-05-10 08:03:11 UTC (rev 6803)
@@ -1,8 +1,8 @@
-var/lib/ncbi-blast+/bin/legacy.sh var/lib/ncbi-blast+/bin/blastall
-var/lib/ncbi-blast+/bin/legacy.sh var/lib/ncbi-blast+/bin/megablast
-var/lib/ncbi-blast+/bin/legacy.sh var/lib/ncbi-blast+/bin/blastpgp
-var/lib/ncbi-blast+/bin/legacy.sh var/lib/ncbi-blast+/bin/bl2seq
-var/lib/ncbi-blast+/bin/legacy.sh var/lib/ncbi-blast+/bin/rpsblast
-var/lib/ncbi-blast+/bin/legacy.sh var/lib/ncbi-blast+/bin/fastacmd
-var/lib/ncbi-blast+/bin/legacy.sh var/lib/ncbi-blast+/bin/formatdb
-var/lib/ncbi-blast+/bin/legacy.sh var/lib/ncbi-blast+/bin/seedtop
+usr/share/ncbi-blast+/bin/legacy.sh usr/share/ncbi-blast+/bin/blastall
+usr/share/ncbi-blast+/bin/legacy.sh usr/share/ncbi-blast+/bin/megablast
+usr/share/ncbi-blast+/bin/legacy.sh usr/share/ncbi-blast+/bin/blastpgp
+usr/share/ncbi-blast+/bin/legacy.sh usr/share/ncbi-blast+/bin/bl2seq
+usr/share/ncbi-blast+/bin/legacy.sh usr/share/ncbi-blast+/bin/rpsblast
+usr/share/ncbi-blast+/bin/legacy.sh usr/share/ncbi-blast+/bin/fastacmd
+usr/share/ncbi-blast+/bin/legacy.sh usr/share/ncbi-blast+/bin/formatdb
+usr/share/ncbi-blast+/bin/legacy.sh usr/share/ncbi-blast+/bin/seedtop

Modified: trunk/packages/ncbi-blast-plus/trunk/debian/rules
===================================================================
--- trunk/packages/ncbi-blast-plus/trunk/debian/rules	2011-05-10 07:36:20 UTC (rev 6802)
+++ trunk/packages/ncbi-blast-plus/trunk/debian/rules	2011-05-10 08:03:11 UTC (rev 6803)
@@ -21,7 +21,7 @@
 override_dh_install:
 	#TODO - can I just use -X.a -Xinclude instead of removing unneeded files later?
 	dh_install
-	cp debian/legacy/legacy.sh debian/ncbi-blast+-legacy/var/lib/ncbi-blast+/bin
+	cp debian/legacy/legacy.sh debian/ncbi-blast+-legacy/usr/share/ncbi-blast+/bin
 	rm -f ${CURDIR}/debian/ncbi-blast+/usr/bin/*test*
 	#mkdir -p ${CURDIR}/debian/ncbi-blast+-dev/usr/lib/ncbi-blast+
 	rm -f ${CURDIR}/debian/ncbi-blast+/usr/lib/ncbi-blast+/*.a