[med-svn] r6821 - in trunk/packages/embassy-domsearch/tags: . 0.1.0++20100721-3 0.1.0++20100721-3/debian

Charles Plessy plessy at alioth.debian.org
Thu May 12 04:00:35 UTC 2011 

Author: plessy
Date: 2011-05-12 04:00:30 +0000 (Thu, 12 May 2011)
New Revision: 6821

Added:
   trunk/packages/embassy-domsearch/tags/0.1.0++20100721-3/
   trunk/packages/embassy-domsearch/tags/0.1.0++20100721-3/debian/changelog
   trunk/packages/embassy-domsearch/tags/0.1.0++20100721-3/debian/control
   trunk/packages/embassy-domsearch/tags/0.1.0++20100721-3/debian/copyright
   trunk/packages/embassy-domsearch/tags/0.1.0++20100721-3/debian/embassy-domsearch.lintian-overrides
Removed:
   trunk/packages/embassy-domsearch/tags/0.1.0++20100721-3/debian/changelog
   trunk/packages/embassy-domsearch/tags/0.1.0++20100721-3/debian/control
   trunk/packages/embassy-domsearch/tags/0.1.0++20100721-3/debian/copyright
   trunk/packages/embassy-domsearch/tags/0.1.0++20100721-3/debian/embassy-domsearch.lintian-overrides
Log:
[svn-buildpackage] Tagging embassy-domsearch 0.1.0++20100721-3


Property changes on: trunk/packages/embassy-domsearch/tags/0.1.0++20100721-3
___________________________________________________________________
Added: svn:mergeinfo
   + 

Deleted: trunk/packages/embassy-domsearch/tags/0.1.0++20100721-3/debian/changelog
===================================================================
--- trunk/packages/embassy-domsearch/trunk/debian/changelog	2011-05-11 07:39:28 UTC (rev 6809)
+++ trunk/packages/embassy-domsearch/tags/0.1.0++20100721-3/debian/changelog	2011-05-12 04:00:30 UTC (rev 6821)
@@ -1,48 +0,0 @@
-embassy-domsearch (0.1.0++20100721-3) UNRELEASED; urgency=low
-
-  * Corrected version mangling in debian/watch. 
-  * Set RPATH with “-Wl,--rpath” as GCC 4.6 does not accept “-R” anymore.
-    Closes: #625193, LP: #771001.
-
- -- Charles Plessy <plessy at debian.org>  Thu, 23 Sep 2010 13:12:18 +0900
-
-embassy-domsearch (0.1.0++20100721-2) unstable; urgency=low
-
-  * Built on emboss-lib 6.3.1-6, pre-emptively depending on versions
-    lower than 6.3.2, because backwards compatibility is sometimes
-    broken (debian/control, debian/rules).
-  * Set an RPATH to /usr/lib/emboss/lib for using EMBOSS private
-    libraries (debian/rules, debian/embassy-domsearch.lintian-overrides).
-  * Refreshed debian/copyright to test the latest DEP-5 format.
-
- -- Charles Plessy <plessy at debian.org>  Thu, 23 Sep 2010 13:04:32 +0900
-
-embassy-domsearch (0.1.0++20100721-1) unstable; urgency=low
-
-   * New upstream release in which the version number was unchanged.
-   * Build-Depends on emboss 6.3.1 (debian/control, debian/rules,
-     closes: #591121).
-   * Build-Depends on libmysqlclient-dev and libpq-dev until emboss is fixed.
-   * Pass -Wl,--as-needed to avoid unneeded binary dependencies (debian/rules).
-   * Incremented Standards-Version to reflect conformance with Policy 3.9.1
-     (debian/control, no changes needed).
-
- -- Charles Plessy <plessy at debian.org>  Wed, 11 Aug 2010 20:33:08 +0900
-
-embassy-domsearch (0.1.0++20100115-1) unstable; urgency=low
-
-  * New upstream release in which the version number was unchanged.
-    (I chose a strange version number to avoid an epoch because of
-    the typo in the previous number).
-  * debian/control:
-    - Build against EMBOSS 6.2 (Closes: #587119).
-    - Checked conformance with Policy 3.8.4 (no changes needed).
-  * debian/*manpages* refreshed.
-
- -- Charles Plessy <plessy at debian.org>  Sat, 26 Jun 2010 22:58:36 +0900
-
-embassy-domsearch (0.1.0+20980715-1) unstable; urgency=low
-
-  * Initial release (Closes: #537204).
-
- -- Charles Plessy <plessy at debian.org>  Mon, 20 Jul 2009 10:43:26 +0900

Copied: trunk/packages/embassy-domsearch/tags/0.1.0++20100721-3/debian/changelog (from rev 6820, trunk/packages/embassy-domsearch/trunk/debian/changelog)
===================================================================
--- trunk/packages/embassy-domsearch/tags/0.1.0++20100721-3/debian/changelog	                        (rev 0)
+++ trunk/packages/embassy-domsearch/tags/0.1.0++20100721-3/debian/changelog	2011-05-12 04:00:30 UTC (rev 6821)
@@ -0,0 +1,52 @@
+embassy-domsearch (0.1.0++20100721-3) unstable; urgency=low
+
+  * Corrected version mangling in debian/watch.
+  * Set RPATH with “-Wl,--rpath” as GCC 4.6 does not accept “-R” anymore.
+    (debian/rules) Closes: #625193, LP: #771001.
+  * Incremented Standards-Version to reflect conformance with Policy 3.9.2
+    (debian/control, no changes needed).
+  * Updated debian/embassy-domsearch.lintian-overrides for lintian 2.5.
+  * debian/copyright validated with config-edit.
+
+ -- Charles Plessy <plessy at debian.org>  Wed, 11 May 2011 18:52:14 +0900
+
+embassy-domsearch (0.1.0++20100721-2) unstable; urgency=low
+
+  * Built on emboss-lib 6.3.1-6, pre-emptively depending on versions
+    lower than 6.3.2, because backwards compatibility is sometimes
+    broken (debian/control, debian/rules).
+  * Set an RPATH to /usr/lib/emboss/lib for using EMBOSS private
+    libraries (debian/rules, debian/embassy-domsearch.lintian-overrides).
+  * Refreshed debian/copyright to test the latest DEP-5 format.
+
+ -- Charles Plessy <plessy at debian.org>  Thu, 23 Sep 2010 13:04:32 +0900
+
+embassy-domsearch (0.1.0++20100721-1) unstable; urgency=low
+
+   * New upstream release in which the version number was unchanged.
+   * Build-Depends on emboss 6.3.1 (debian/control, debian/rules,
+     closes: #591121).
+   * Build-Depends on libmysqlclient-dev and libpq-dev until emboss is fixed.
+   * Pass -Wl,--as-needed to avoid unneeded binary dependencies (debian/rules).
+   * Incremented Standards-Version to reflect conformance with Policy 3.9.1
+     (debian/control, no changes needed).
+
+ -- Charles Plessy <plessy at debian.org>  Wed, 11 Aug 2010 20:33:08 +0900
+
+embassy-domsearch (0.1.0++20100115-1) unstable; urgency=low
+
+  * New upstream release in which the version number was unchanged.
+    (I chose a strange version number to avoid an epoch because of
+    the typo in the previous number).
+  * debian/control:
+    - Build against EMBOSS 6.2 (Closes: #587119).
+    - Checked conformance with Policy 3.8.4 (no changes needed).
+  * debian/*manpages* refreshed.
+
+ -- Charles Plessy <plessy at debian.org>  Sat, 26 Jun 2010 22:58:36 +0900
+
+embassy-domsearch (0.1.0+20980715-1) unstable; urgency=low
+
+  * Initial release (Closes: #537204).
+
+ -- Charles Plessy <plessy at debian.org>  Mon, 20 Jul 2009 10:43:26 +0900

Deleted: trunk/packages/embassy-domsearch/tags/0.1.0++20100721-3/debian/control
===================================================================
--- trunk/packages/embassy-domsearch/trunk/debian/control	2011-05-11 07:39:28 UTC (rev 6809)
+++ trunk/packages/embassy-domsearch/tags/0.1.0++20100721-3/debian/control	2011-05-12 04:00:30 UTC (rev 6821)
@@ -1,35 +0,0 @@
-Source: embassy-domsearch
-Section: science
-Priority: optional
-Build-Depends:
-	cdbs,
-	debhelper (>= 7),
-	emboss-lib (>= 6.3.1-6~),
-	emboss-lib (<< 6.3.2~),
-	libx11-dev,
-	libgd2-xpm-dev,
-	libmysqlclient-dev,
-        libpq-dev
-Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-DM-Upload-Allowed: yes
-Uploaders: Charles Plessy <plessy at debian.org>
-Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/embassy-domsearch/trunk/?rev=0&sc=0
-Vcs-Svn: svn://svn.debian.org/svn/debian-med/trunk/packages/embassy-domsearch/trunk/
-Standards-Version: 3.9.1
-Homepage: http://emboss.sourceforge.net/apps/cvs/embassy/index.html#DOMSEARCH
-
-Package: embassy-domsearch
-Architecture: any
-Depends: ${shlibs:Depends}, ${misc:Depends}, emboss-lib (>= 6.3.1-6~), emboss-lib (<< 6.3.2~)
-Recommends: emboss
-Suggests: embassy
-Description: Extra EMBOSS commands to search for protein domains
- The DOMSEARCH programs were developed by Jon Ison and colleagues at MRC HGMP
- for their protein domain research. They are included as an EMBASSY package as
- a work in progress.
- .
- Applications in this DOMSEARCH release are seqfraggle (removes fragment
- sequences from DHF files), seqnr (removes redundancy from DHF files), seqsearch
- (generates PSI-BLAST hits (DHF file) from a DAF file), seqsort (Remove
- ambiguous classified sequences from DHF files) and seqwords (Generates DHF
- files from keyword search of UniProt).

Copied: trunk/packages/embassy-domsearch/tags/0.1.0++20100721-3/debian/control (from rev 6820, trunk/packages/embassy-domsearch/trunk/debian/control)
===================================================================
--- trunk/packages/embassy-domsearch/tags/0.1.0++20100721-3/debian/control	                        (rev 0)
+++ trunk/packages/embassy-domsearch/tags/0.1.0++20100721-3/debian/control	2011-05-12 04:00:30 UTC (rev 6821)
@@ -0,0 +1,35 @@
+Source: embassy-domsearch
+Section: science
+Priority: optional
+Build-Depends:
+	cdbs,
+	debhelper (>= 7),
+	emboss-lib (>= 6.3.1-6~),
+	emboss-lib (<< 6.3.2~),
+	libx11-dev,
+	libgd2-xpm-dev,
+	libmysqlclient-dev,
+        libpq-dev
+Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+DM-Upload-Allowed: yes
+Uploaders: Charles Plessy <plessy at debian.org>
+Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/embassy-domsearch/trunk/?rev=0&sc=0
+Vcs-Svn: svn://svn.debian.org/svn/debian-med/trunk/packages/embassy-domsearch/trunk/
+Standards-Version: 3.9.2
+Homepage: http://emboss.sourceforge.net/apps/cvs/embassy/index.html#DOMSEARCH
+
+Package: embassy-domsearch
+Architecture: any
+Depends: ${shlibs:Depends}, ${misc:Depends}, emboss-lib (>= 6.3.1-6~), emboss-lib (<< 6.3.2~)
+Recommends: emboss
+Suggests: embassy
+Description: Extra EMBOSS commands to search for protein domains
+ The DOMSEARCH programs were developed by Jon Ison and colleagues at MRC HGMP
+ for their protein domain research. They are included as an EMBASSY package as
+ a work in progress.
+ .
+ Applications in this DOMSEARCH release are seqfraggle (removes fragment
+ sequences from DHF files), seqnr (removes redundancy from DHF files), seqsearch
+ (generates PSI-BLAST hits (DHF file) from a DAF file), seqsort (Remove
+ ambiguous classified sequences from DHF files) and seqwords (Generates DHF
+ files from keyword search of UniProt).

Deleted: trunk/packages/embassy-domsearch/tags/0.1.0++20100721-3/debian/copyright
===================================================================
--- trunk/packages/embassy-domsearch/trunk/debian/copyright	2011-05-11 07:39:28 UTC (rev 6809)
+++ trunk/packages/embassy-domsearch/tags/0.1.0++20100721-3/debian/copyright	2011-05-12 04:00:30 UTC (rev 6821)
@@ -1,21 +0,0 @@
-Format: DEP-5
-Source: ftp://emboss.open-bio.org/pub/EMBOSS/DOMSEARCH-0.1.0.tar.gz
-Copyright: Jon Ison (jison at ebi.ac.uk)
- Matt Blades
- Ranjeeva Ranasinghe
-License: GPL-2+
-  This package is free software; you can redistribute it and/or modify
-  it under the terms of the GNU General Public License as published by
-  the Free Software Foundation; either version 2 of the License, or
-  (at your option) any later version.
- .
-  This package is distributed in the hope that it will be useful,
-  but WITHOUT ANY WARRANTY; without even the implied warranty of
-  MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
-  GNU General Public License for more details.
- .
-  You should have received a copy of the GNU General Public License
-  along with this package; if not, write to the Free Software
-  Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA  02110-1301 USA
-Comment: On Debian systems, the complete text of the GNU General Public License
- version 2 can be found in ‘/usr/share/common-licenses/GPL-2’.

Copied: trunk/packages/embassy-domsearch/tags/0.1.0++20100721-3/debian/copyright (from rev 6820, trunk/packages/embassy-domsearch/trunk/debian/copyright)
===================================================================
--- trunk/packages/embassy-domsearch/tags/0.1.0++20100721-3/debian/copyright	                        (rev 0)
+++ trunk/packages/embassy-domsearch/tags/0.1.0++20100721-3/debian/copyright	2011-05-12 04:00:30 UTC (rev 6821)
@@ -0,0 +1,23 @@
+Format: http://dep.debian.net/deps/dep5/
+Source: ftp://emboss.open-bio.org/pub/EMBOSS/DOMSEARCH-0.1.0.tar.gz
+
+Files: *
+Copyright: Jon Ison (jison at ebi.ac.uk)
+ Matt Blades
+ Ranjeeva Ranasinghe
+License: GPL-2+
+  This package is free software; you can redistribute it and/or modify
+  it under the terms of the GNU General Public License as published by
+  the Free Software Foundation; either version 2 of the License, or
+  (at your option) any later version.
+ .
+  This package is distributed in the hope that it will be useful,
+  but WITHOUT ANY WARRANTY; without even the implied warranty of
+  MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+  GNU General Public License for more details.
+ .
+  You should have received a copy of the GNU General Public License
+  along with this package; if not, write to the Free Software
+  Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA  02110-1301 USA
+Comment: On Debian systems, the complete text of the GNU General Public License
+ version 2 can be found in ‘/usr/share/common-licenses/GPL-2’.

Deleted: trunk/packages/embassy-domsearch/tags/0.1.0++20100721-3/debian/embassy-domsearch.lintian-overrides
===================================================================
--- trunk/packages/embassy-domsearch/trunk/debian/embassy-domsearch.lintian-overrides	2011-05-11 07:39:28 UTC (rev 6809)
+++ trunk/packages/embassy-domsearch/tags/0.1.0++20100721-3/debian/embassy-domsearch.lintian-overrides	2011-05-12 04:00:30 UTC (rev 6821)
@@ -1,7 +0,0 @@
-# The embassy packages use privately some of the EMBOSS libraries. They have
-# the same upstream authors and are released together.
-embassy-domsearch: binary-or-shlib-defines-rpath ./usr/bin/seqfraggle /usr/lib/emboss/lib
-embassy-domsearch: binary-or-shlib-defines-rpath ./usr/bin/seqnr /usr/lib/emboss/lib
-embassy-domsearch: binary-or-shlib-defines-rpath ./usr/bin/seqsearch /usr/lib/emboss/lib
-embassy-domsearch: binary-or-shlib-defines-rpath ./usr/bin/seqsort /usr/lib/emboss/lib
-embassy-domsearch: binary-or-shlib-defines-rpath ./usr/bin/seqwords /usr/lib/emboss/lib

Copied: trunk/packages/embassy-domsearch/tags/0.1.0++20100721-3/debian/embassy-domsearch.lintian-overrides (from rev 6820, trunk/packages/embassy-domsearch/trunk/debian/embassy-domsearch.lintian-overrides)
===================================================================
--- trunk/packages/embassy-domsearch/tags/0.1.0++20100721-3/debian/embassy-domsearch.lintian-overrides	                        (rev 0)
+++ trunk/packages/embassy-domsearch/tags/0.1.0++20100721-3/debian/embassy-domsearch.lintian-overrides	2011-05-12 04:00:30 UTC (rev 6821)
@@ -0,0 +1,3 @@
+# The embassy packages use privately some of the EMBOSS libraries. They have
+# the same upstream authors and are released together.
+embassy-domsearch: binary-or-shlib-defines-rpath *

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