[med-svn] r6823 - in trunk/packages/embassy-domalign/tags: . 0.1.0+20100721-3/debian
Charles Plessy
plessy at alioth.debian.org
Thu May 12 04:49:54 UTC 2011
Author: plessy
Date: 2011-05-12 04:49:52 +0000 (Thu, 12 May 2011)
New Revision: 6823
Added:
trunk/packages/embassy-domalign/tags/0.1.0+20100721-3/
trunk/packages/embassy-domalign/tags/0.1.0+20100721-3/debian/changelog
trunk/packages/embassy-domalign/tags/0.1.0+20100721-3/debian/control
trunk/packages/embassy-domalign/tags/0.1.0+20100721-3/debian/copyright
trunk/packages/embassy-domalign/tags/0.1.0+20100721-3/debian/embassy-domalign.lintian-overrides
Removed:
trunk/packages/embassy-domalign/tags/0.1.0+20100721-3/debian/changelog
trunk/packages/embassy-domalign/tags/0.1.0+20100721-3/debian/control
trunk/packages/embassy-domalign/tags/0.1.0+20100721-3/debian/copyright
trunk/packages/embassy-domalign/tags/0.1.0+20100721-3/debian/embassy-domalign.lintian-overrides
Log:
[svn-buildpackage] Tagging embassy-domalign 0.1.0+20100721-3
Deleted: trunk/packages/embassy-domalign/tags/0.1.0+20100721-3/debian/changelog
===================================================================
--- trunk/packages/embassy-domalign/trunk/debian/changelog 2011-05-11 22:47:35 UTC (rev 6819)
+++ trunk/packages/embassy-domalign/tags/0.1.0+20100721-3/debian/changelog 2011-05-12 04:49:52 UTC (rev 6823)
@@ -1,72 +0,0 @@
-embassy-domalign (0.1.0+20100721-3) UNRELEASED; urgency=low
-
- * Set RPATH with “-Wl,--rpath” as GCC 4.6 does not accept “-R” anymore.
- Closes: #625189, LP: #771115.
-
- -- Charles Plessy <plessy at debian.org> Sun, 08 May 2011 20:52:18 +0900
-
-embassy-domalign (0.1.0+20100721-2) unstable; urgency=low
-
- * Built on emboss-lib 6.3.1-6, pre-emptively depending on versions
- lower than 6.3.2, because backwards compatibility is sometimes
- broken (debian/control, debian/rules).
- * Set an RPATH to /usr/lib/emboss/lib for using EMBOSS private
- libraries (debian/rules, debian/embassy-domalign.lintian-overrides).
- * Use quilt since simple-patchsys is deprecated (debian/control,
- debian/rules, debian/patches/series).
- * Refreshed debian/copyright to test the latest DEP-5 format.
-
- -- Charles Plessy <plessy at debian.org> Wed, 22 Sep 2010 20:05:29 +0900
-
-embassy-domalign (0.1.0+20100721-1) unstable; urgency=low
-
- * New upstream release in which the version number was unchanged.
- * Build-Depends on emboss 6.3.1 (debian/control, debian/rules,
- closes: #591116).
- * Build-Depends on libmysqlclient-dev and libpq-dev until emboss is fixed.
- * Pass -Wl,--as-needed to avoid unneeded binary dependencies (debian/rules).
- * Incremented Standards-Version to reflect conformance with Policy 3.9.1
- (debian/control, no changes needed).
- * Patched src/Makefile.am to use Debian's libexpat, using CDBS
- (debian/patches/enable-esystemlibs.patch, debian/rules, debian/control).
-
- -- Charles Plessy <plessy at debian.org> Wed, 11 Aug 2010 19:45:22 +0900
-
-embassy-domalign (0.1.0+20100115-1) unstable; urgency=low
-
- * New upstream release in which the version number was unchanged.
- * debian/control:
- - Build against EMBOSS 6.2 (Closes: #587113).
- - Checked conformance with Policy 3.8.4 (no changes needed).
- * debian/*manpages* refreshed.
- -- Charles Plessy <plessy at debian.org> Sat, 26 Jun 2010 18:51:56 +0900
-
-embassy-domalign (0.1.0+20090715-1) unstable; urgency=low
-
- * New upstream release in which the version number was unchanged.
- * debian/control:
- - Build against EMBOSS 6.1
- - Checked conformance with Policy 3.8.2 (no changes needed).
- * debian/watch: mangle Debian version to ignore the timestamp.
- * Refreshed and experimeted on debian/copyright.
- * debian/*manpages* refreshed and moved to section 1e.
-
- -- Charles Plessy <plessy at debian.org> Sat, 18 Jul 2009 23:33:19 +0900
-
-embassy-domalign (0.1.0+20080715-1) unstable; urgency=low
-
- * New upstream release in which the version number was unchanged.
- * debian/control:
- - Updated my email address.
- - Build against EMBOSS 6.
- - Using debhelper 7.
- - Checked conformance with Policy 3.8.1 (no changes needed).
- - Corrected DM-Upload-Allowed.
-
- -- Charles Plessy <plessy at debian.org> Tue, 21 Apr 2009 10:12:59 +0900
-
-embassy-domalign (0.1.0-1) unstable; urgency=low
-
- * Initial release
-
- -- Charles Plessy <charles-debian-nospam at plessy.org> Wed, 26 Sep 2007 09:45:52 +0900
Copied: trunk/packages/embassy-domalign/tags/0.1.0+20100721-3/debian/changelog (from rev 6822, trunk/packages/embassy-domalign/trunk/debian/changelog)
===================================================================
--- trunk/packages/embassy-domalign/tags/0.1.0+20100721-3/debian/changelog (rev 0)
+++ trunk/packages/embassy-domalign/tags/0.1.0+20100721-3/debian/changelog 2011-05-12 04:49:52 UTC (rev 6823)
@@ -0,0 +1,76 @@
+embassy-domalign (0.1.0+20100721-3) unstable; urgency=low
+
+ * Set RPATH with “-Wl,--rpath” as GCC 4.6 does not accept “-R” anymore.
+ (debian/rules) Closes: #625189, LP: #771115.
+ * Incremented Standards-Version to reflect conformance with Policy 3.9.2
+ (debian/control, no changes needed).
+ * Updated debian/embassy-domsearch.lintian-overrides for lintian 2.5.
+ * debian/copyright validated with config-edit.
+
+ -- Charles Plessy <plessy at debian.org> Thu, 12 May 2011 11:13:56 +0900
+
+embassy-domalign (0.1.0+20100721-2) unstable; urgency=low
+
+ * Built on emboss-lib 6.3.1-6, pre-emptively depending on versions
+ lower than 6.3.2, because backwards compatibility is sometimes
+ broken (debian/control, debian/rules).
+ * Set an RPATH to /usr/lib/emboss/lib for using EMBOSS private
+ libraries (debian/rules, debian/embassy-domalign.lintian-overrides).
+ * Use quilt since simple-patchsys is deprecated (debian/control,
+ debian/rules, debian/patches/series).
+ * Refreshed debian/copyright to test the latest DEP-5 format.
+
+ -- Charles Plessy <plessy at debian.org> Wed, 22 Sep 2010 20:05:29 +0900
+
+embassy-domalign (0.1.0+20100721-1) unstable; urgency=low
+
+ * New upstream release in which the version number was unchanged.
+ * Build-Depends on emboss 6.3.1 (debian/control, debian/rules,
+ closes: #591116).
+ * Build-Depends on libmysqlclient-dev and libpq-dev until emboss is fixed.
+ * Pass -Wl,--as-needed to avoid unneeded binary dependencies (debian/rules).
+ * Incremented Standards-Version to reflect conformance with Policy 3.9.1
+ (debian/control, no changes needed).
+ * Patched src/Makefile.am to use Debian's libexpat, using CDBS
+ (debian/patches/enable-esystemlibs.patch, debian/rules, debian/control).
+
+ -- Charles Plessy <plessy at debian.org> Wed, 11 Aug 2010 19:45:22 +0900
+
+embassy-domalign (0.1.0+20100115-1) unstable; urgency=low
+
+ * New upstream release in which the version number was unchanged.
+ * debian/control:
+ - Build against EMBOSS 6.2 (Closes: #587113).
+ - Checked conformance with Policy 3.8.4 (no changes needed).
+ * debian/*manpages* refreshed.
+ -- Charles Plessy <plessy at debian.org> Sat, 26 Jun 2010 18:51:56 +0900
+
+embassy-domalign (0.1.0+20090715-1) unstable; urgency=low
+
+ * New upstream release in which the version number was unchanged.
+ * debian/control:
+ - Build against EMBOSS 6.1
+ - Checked conformance with Policy 3.8.2 (no changes needed).
+ * debian/watch: mangle Debian version to ignore the timestamp.
+ * Refreshed and experimeted on debian/copyright.
+ * debian/*manpages* refreshed and moved to section 1e.
+
+ -- Charles Plessy <plessy at debian.org> Sat, 18 Jul 2009 23:33:19 +0900
+
+embassy-domalign (0.1.0+20080715-1) unstable; urgency=low
+
+ * New upstream release in which the version number was unchanged.
+ * debian/control:
+ - Updated my email address.
+ - Build against EMBOSS 6.
+ - Using debhelper 7.
+ - Checked conformance with Policy 3.8.1 (no changes needed).
+ - Corrected DM-Upload-Allowed.
+
+ -- Charles Plessy <plessy at debian.org> Tue, 21 Apr 2009 10:12:59 +0900
+
+embassy-domalign (0.1.0-1) unstable; urgency=low
+
+ * Initial release
+
+ -- Charles Plessy <charles-debian-nospam at plessy.org> Wed, 26 Sep 2007 09:45:52 +0900
Deleted: trunk/packages/embassy-domalign/tags/0.1.0+20100721-3/debian/control
===================================================================
--- trunk/packages/embassy-domalign/trunk/debian/control 2011-05-11 22:47:35 UTC (rev 6819)
+++ trunk/packages/embassy-domalign/tags/0.1.0+20100721-3/debian/control 2011-05-12 04:49:52 UTC (rev 6823)
@@ -1,38 +0,0 @@
-Source: embassy-domalign
-Section: science
-Priority: optional
-Build-Depends:
- cdbs,
- debhelper (>= 7),
- quilt,
- emboss-lib (>= 6.3.1-6~),
- emboss-lib (<< 6.3.2~),
- libx11-dev,
- libgd2-xpm-dev,
- libmysqlclient-dev,
- libpq-dev,
- automake
-# automake is necessary as long as src/Makefile.am is patched.
-Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-DM-Upload-Allowed: yes
-Uploaders: Charles Plessy <plessy at debian.org>
-Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/embassy-domalign/trunk/?rev=0&sc=0
-Vcs-Svn: svn://svn.debian.org/svn/debian-med/trunk/packages/embassy-domalign/trunk/
-Standards-Version: 3.9.1
-Homepage: http://emboss.sourceforge.net/apps/cvs/embassy/index.html#DOMALIGN
-
-Package: embassy-domalign
-Architecture: any
-Depends: ${shlibs:Depends}, ${misc:Depends}, emboss-lib (>= 6.3.1-6~), emboss-lib (<< 6.3.2~)
-Recommends: emboss
-Suggests: embassy
-Description: Extra EMBOSS commands for protein domain alignment
- The DOMALIGN programs were developed by Jon Ison and colleagues at MRC HGMP
- for their protein domain research. They are included as an EMBASSY package as
- a work in progress.
- .
- Applications in the current domalign release are allversusall (sequence
- similarity data from all-versus-all comparison), domainalign (generates
- alignments (DAF file) for nodes in a DCF file), domainrep (reorders DCF file
- to identify representative structures) and seqalign (extend alignments (DAF
- file) with sequences (DHF file)).
Copied: trunk/packages/embassy-domalign/tags/0.1.0+20100721-3/debian/control (from rev 6822, trunk/packages/embassy-domalign/trunk/debian/control)
===================================================================
--- trunk/packages/embassy-domalign/tags/0.1.0+20100721-3/debian/control (rev 0)
+++ trunk/packages/embassy-domalign/tags/0.1.0+20100721-3/debian/control 2011-05-12 04:49:52 UTC (rev 6823)
@@ -0,0 +1,38 @@
+Source: embassy-domalign
+Section: science
+Priority: optional
+Build-Depends:
+ cdbs,
+ debhelper (>= 7),
+ quilt,
+ emboss-lib (>= 6.3.1-6~),
+ emboss-lib (<< 6.3.2~),
+ libx11-dev,
+ libgd2-xpm-dev,
+ libmysqlclient-dev,
+ libpq-dev,
+ automake
+# automake is necessary as long as src/Makefile.am is patched.
+Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+DM-Upload-Allowed: yes
+Uploaders: Charles Plessy <plessy at debian.org>
+Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/embassy-domalign/trunk/?rev=0&sc=0
+Vcs-Svn: svn://svn.debian.org/svn/debian-med/trunk/packages/embassy-domalign/trunk/
+Standards-Version: 3.9.2
+Homepage: http://emboss.sourceforge.net/apps/cvs/embassy/index.html#DOMALIGN
+
+Package: embassy-domalign
+Architecture: any
+Depends: ${shlibs:Depends}, ${misc:Depends}, emboss-lib (>= 6.3.1-6~), emboss-lib (<< 6.3.2~)
+Recommends: emboss
+Suggests: embassy
+Description: Extra EMBOSS commands for protein domain alignment
+ The DOMALIGN programs were developed by Jon Ison and colleagues at MRC HGMP
+ for their protein domain research. They are included as an EMBASSY package as
+ a work in progress.
+ .
+ Applications in the current domalign release are allversusall (sequence
+ similarity data from all-versus-all comparison), domainalign (generates
+ alignments (DAF file) for nodes in a DCF file), domainrep (reorders DCF file
+ to identify representative structures) and seqalign (extend alignments (DAF
+ file) with sequences (DHF file)).
Deleted: trunk/packages/embassy-domalign/tags/0.1.0+20100721-3/debian/copyright
===================================================================
--- trunk/packages/embassy-domalign/trunk/debian/copyright 2011-05-11 22:47:35 UTC (rev 6819)
+++ trunk/packages/embassy-domalign/tags/0.1.0+20100721-3/debian/copyright 2011-05-12 04:49:52 UTC (rev 6823)
@@ -1,23 +0,0 @@
-Format: DEP-5
-Source: ftp://emboss.open-bio.org/pub/EMBOSS/DOMALIGN-0.1.0.tar.gz
-Copyright:
- Matt Blades
- Jon Ison (jison at ebi.ac.uk)
- Ranjeeva Ranasinghe
-License: GPL-2+
- This package is free software; you can redistribute it and/or modify
- it under the terms of the GNU General Public License as published by
- the Free Software Foundation; either version 2 of the License, or
- (at your option) any later version.
- .
- This package is distributed in the hope that it will be useful,
- but WITHOUT ANY WARRANTY; without even the implied warranty of
- MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
- GNU General Public License for more details.
- .
- You should have received a copy of the GNU General Public License
- along with this package; if not, write to the Free Software
- Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA
-Comment:
- On Debian systems, the complete text of the GNU General Public License version
- 2 can be found in ‘/usr/share/common-licenses/GPL-2’.
Copied: trunk/packages/embassy-domalign/tags/0.1.0+20100721-3/debian/copyright (from rev 6822, trunk/packages/embassy-domalign/trunk/debian/copyright)
===================================================================
--- trunk/packages/embassy-domalign/tags/0.1.0+20100721-3/debian/copyright (rev 0)
+++ trunk/packages/embassy-domalign/tags/0.1.0+20100721-3/debian/copyright 2011-05-12 04:49:52 UTC (rev 6823)
@@ -0,0 +1,25 @@
+Format: http://dep.debian.net/deps/dep5/
+Source: ftp://emboss.open-bio.org/pub/EMBOSS/DOMALIGN-0.1.0.tar.gz
+
+Files: *
+Copyright:
+ Matt Blades
+ Jon Ison (jison at ebi.ac.uk)
+ Ranjeeva Ranasinghe
+License: GPL-2+
+ This package is free software; you can redistribute it and/or modify
+ it under the terms of the GNU General Public License as published by
+ the Free Software Foundation; either version 2 of the License, or
+ (at your option) any later version.
+ .
+ This package is distributed in the hope that it will be useful,
+ but WITHOUT ANY WARRANTY; without even the implied warranty of
+ MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ GNU General Public License for more details.
+ .
+ You should have received a copy of the GNU General Public License
+ along with this package; if not, write to the Free Software
+ Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA
+Comment:
+ On Debian systems, the complete text of the GNU General Public License version
+ 2 can be found in ‘/usr/share/common-licenses/GPL-2’.
Deleted: trunk/packages/embassy-domalign/tags/0.1.0+20100721-3/debian/embassy-domalign.lintian-overrides
===================================================================
--- trunk/packages/embassy-domalign/trunk/debian/embassy-domalign.lintian-overrides 2011-05-11 22:47:35 UTC (rev 6819)
+++ trunk/packages/embassy-domalign/tags/0.1.0+20100721-3/debian/embassy-domalign.lintian-overrides 2011-05-12 04:49:52 UTC (rev 6823)
@@ -1,6 +0,0 @@
-# The embassy packages use privately some of the EMBOSS libraries. They have
-# the same upstream authors and are released together.
-embassy-domalign: binary-or-shlib-defines-rpath ./usr/bin/allversusall /usr/lib/emboss/lib
-embassy-domalign: binary-or-shlib-defines-rpath ./usr/bin/domainalign /usr/lib/emboss/lib
-embassy-domalign: binary-or-shlib-defines-rpath ./usr/bin/domainrep /usr/lib/emboss/lib
-embassy-domalign: binary-or-shlib-defines-rpath ./usr/bin/seqalign /usr/lib/emboss/lib
Copied: trunk/packages/embassy-domalign/tags/0.1.0+20100721-3/debian/embassy-domalign.lintian-overrides (from rev 6822, trunk/packages/embassy-domalign/trunk/debian/embassy-domalign.lintian-overrides)
===================================================================
--- trunk/packages/embassy-domalign/tags/0.1.0+20100721-3/debian/embassy-domalign.lintian-overrides (rev 0)
+++ trunk/packages/embassy-domalign/tags/0.1.0+20100721-3/debian/embassy-domalign.lintian-overrides 2011-05-12 04:49:52 UTC (rev 6823)
@@ -0,0 +1,3 @@
+# The embassy packages use privately some of the EMBOSS libraries. They have
+# the same upstream authors and are released together.
+embassy-domalign: binary-or-shlib-defines-rpath *
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