[med-svn] r8379 - in trunk/packages/ugene/trunk: . debian debian/source
Steffen Möller
moeller at alioth.debian.org
Wed Nov 2 10:02:09 UTC 2011
Author: moeller
Date: 2011-11-02 10:02:09 +0000 (Wed, 02 Nov 2011)
New Revision: 8379
Added:
trunk/packages/ugene/trunk/debian/
trunk/packages/ugene/trunk/debian/changelog
trunk/packages/ugene/trunk/debian/compat
trunk/packages/ugene/trunk/debian/control
trunk/packages/ugene/trunk/debian/copyright
trunk/packages/ugene/trunk/debian/rules
trunk/packages/ugene/trunk/debian/source/
trunk/packages/ugene/trunk/debian/source/format
trunk/packages/ugene/trunk/debian/watch
Log:
Added build instructions from upstream - as prepared for Ubuntu,
where ugene is already shipping.
Property changes on: trunk/packages/ugene/trunk/debian
___________________________________________________________________
Added: mergeWithUpstream
+ 1
Added: trunk/packages/ugene/trunk/debian/changelog
===================================================================
--- trunk/packages/ugene/trunk/debian/changelog (rev 0)
+++ trunk/packages/ugene/trunk/debian/changelog 2011-11-02 10:02:09 UTC (rev 8379)
@@ -0,0 +1,140 @@
+ugene (1.9.8+repack-0ubuntu1~oneiric) oneiric; urgency=low
+
+ * Latest release oneiric build
+
+ -- Ivan Novikov <inovikov at unipro.ru> Thu, 27 Oct 2011 15:33:13 +0700
+
+ugene (1.9.8+repack-0ubuntu1~natty) natty; urgency=low
+
+ * New upstream release
+
+ -- Ivan Novikov <inovikov at unipro.ru> Thu, 27 Oct 2011 12:25:50 +0700
+
+ugene (1.9.5+repack-0ubuntu1~natty) natty; urgency=low
+
+ * New upstream release
+
+ -- Alexey Kuznecov <akuznecov at unipro.ru> Wed, 03 Aug 2011 20:20:50 +0700
+
+ugene (1.9.4+repack-0ubuntu1~maverick) maverick; urgency=low
+
+ * Latest release maverick build
+
+ -- Alexey Kuznecov <akuznecov at unipro.ru> Thu, 14 Jul 2011 21:15:23 +0700
+
+ugene (1.9.4+repack-0ubuntu1~natty) natty; urgency=low
+
+ * New upstream release
+ * Copyright information updated
+
+ -- Alexey Kuznecov <akuznecov at unipro.ru> Thu, 14 Jul 2011 21:07:52 +0700
+
+ugene (1.9.3+repack-0ubuntu1~maverick) maverick; urgency=low
+
+ * Latest release maverick build
+
+ -- Konstantin Okonechnikov <k.okonechnikov at gmail.com> Wed, 15 Jun 2011 10:42:00 +0700
+
+ugene (1.9.2+repack-0ubuntu1~maverick) maverick; urgency=low
+
+ * Latest release maverick build
+
+ -- Konstantin Okonechnikov <k.okonechnikov at gmail.com> Tue, 29 Mar 2011 11:25:00 +0700
+
+
+ugene (1.9.1+repack-0ubuntu3) maverick; urgency=low
+
+ * Latest release maverick build, new build attempt
+
+ -- Konstantin Okonechnikov <k.okonechnikov at gmail.com> Thu, 10 Feb 2011 10:37:17 +0700
+
+
+ugene (1.9.1+repack-0ubuntu2) maverick; urgency=low
+
+ * Latest release maverick build, new build attempt
+
+ -- Konstantin Okonechnikov <k.okonechnikov at gmail.com> Wed, 09 Feb 2011 13:55:17 +0700
+
+
+ugene (1.9.1+repack-0ubuntu1) maverick; urgency=low
+
+ * Latest release maverick build
+
+ -- Konstantin Okonechnikov <k.okonechnikov at gmail.com> Wed, 09 Feb 2011 12:55:17 +0700
+
+
+ugene (1.7.2+repack-0ubuntu1) lucid; urgency=low
+
+ * Latest release lucid build
+ * Merging with changes from official Ubuntu package
+
+ -- Konstantin Okonechnikov <k.okonechnikov at gmail.com> Mon, 23 Aug 2010 16:55:17 +0700
+
+ugene (1.6.2+repack-0ubuntu2) lucid; urgency=low
+
+ * Latest release lucid build
+ -- Konstantin Okonechnikov <k.okonechnikov at gmail.com> Wed, 12 May 2010 12:58:00 +0700
+
+ugene (1.6.2+repack-0ubuntu1~ppa1~karmic1) karmic; urgency=low
+
+ * New upstream release
+ * Copyright information updated
+ -- Konstantin Okonechnikov <k.okonechnikov at gmail> Tue, 7 Apr 2009 00:15:00 +0600
+
+ugene (1.5.2+repack-0ubuntu1) karmic; urgency=low
+
+ * New upstream release
+ * Copyright information updated
+
+ -- Ivan Efremov <iefremov at unipro.ru> Mon, 06 Jul 2009 12:58:00 +0700
+
+ugene (1.5.1+repack-0ubuntu1) karmic; urgency=low
+
+ * New upstream release
+ * Copyright information updated
+
+ -- Ivan Efremov <iefremov at unipro.ru> Fri, 17 Jul 2009 18:04:24 +0700
+
+ugene (1.5.0+repack-0ubuntu1) karmic; urgency=low
+
+ * New upstream release
+ * Copyright information updated
+ * Versions of needed packages are bumped up
+ because of some bugs in older versions
+
+ -- Ivan Efremov <iefremov at unipro.ru> Tue, 07 Jul 2009 16:39:27 +0700
+
+ugene (1.4.2+repack-0ubuntu1) karmic; urgency=low
+
+ * New upstream release
+
+ -- Morten Kjeldgaard <mok0 at ubuntu.com> Tue, 16 Jun 2009 13:20:00 +0200
+
+ugene (1.4.1+repack-0ubuntu1) karmic; urgency=low
+
+ * New upstream release.
+ * Bump-up Standards.
+
+ -- Alessio Treglia <quadrispro at ubuntu.com> Thu, 30 Apr 2009 08:14:03 +0200
+
+ugene (1.3.3+repack-0ubuntu1) jaunty; urgency=low
+
+ [ Bhavani Shankar ]
+ * New Upstream version (LP: #326830)
+ * Files unneeded for this package were removed from
+ the original tarball.
+
+ [ Morten Kjeldgaard ]
+ * Fixed debian/watch to mangle local name
+ * Fixed get-orig-source rule to name repackaged tarball correctly.
+ * Copyright for two files specified.
+
+ -- Bhavani Shankar <right2bhavi at gmail.com> Sun, 08 Feb 2009 16:32:24 +0530
+
+ugene (1.3.2+repack-0ubuntu1) jaunty; urgency=low
+
+ * Initial packaging (LP: #319917)
+ * Files unneeded for this package were removed from
+ the original tarball
+
+ -- Ivan Efremov <iefremov at unipro.ru> Mon, 26 Jan 2009 19:17:51 +0600
Added: trunk/packages/ugene/trunk/debian/compat
===================================================================
--- trunk/packages/ugene/trunk/debian/compat (rev 0)
+++ trunk/packages/ugene/trunk/debian/compat 2011-11-02 10:02:09 UTC (rev 8379)
@@ -0,0 +1 @@
+5
Added: trunk/packages/ugene/trunk/debian/control
===================================================================
--- trunk/packages/ugene/trunk/debian/control (rev 0)
+++ trunk/packages/ugene/trunk/debian/control 2011-11-02 10:02:09 UTC (rev 8379)
@@ -0,0 +1,27 @@
+Source: ugene
+Section: science
+Priority: optional
+Maintainer: Ubuntu Developers <ubuntu-devel-discuss at lists.ubuntu.com>
+XSBC-Original-Maintainer: Ivan Efremov <iefremov at unipro.ru>
+Build-Depends: libqt4-dev (>= 4.7.0), libqtwebkit-dev, libqt4-opengl-dev (>= 4.7.0), zlib1g-dev, debhelper (>=5.0.38)
+Standards-Version: 3.9.1
+Homepage: http://ugene.unipro.ru
+
+Package: ugene
+Architecture: any
+Depends: ${shlibs:Depends}, libqt4-gui (>=4.7.0), libqt4-core (>=4.7.0), ugene-data, ${misc:Depends}
+Description: integrated bioinformatics toolkit
+ Unipro UGENE is a cross-platform visual environment for DNA and protein
+ sequence analysis. UGENE integrates the most important bioinformatics
+ computational algorithms and provides an easy-to-use GUI for performing
+ complex analysis of the genomic data. One of the main features of UGENE
+ is a designer for custom bioinformatics workflows.
+
+Package: ugene-data
+Architecture: all
+Depends: ${misc:Depends}
+Description: required data for UGENE - integrated bioinformatics toolkit
+ Unipro UGENE is a cross-platform visual environment for DNA and protein
+ sequence analysis.
+ .
+ This package contains various data and example files for UGENE.
Added: trunk/packages/ugene/trunk/debian/copyright
===================================================================
--- trunk/packages/ugene/trunk/debian/copyright (rev 0)
+++ trunk/packages/ugene/trunk/debian/copyright 2011-11-02 10:02:09 UTC (rev 8379)
@@ -0,0 +1,381 @@
+This package was debianized by Ivan Efremov <iefremov at unipro.ru> on
+Mon, 26 Jan 2009 19:18:51 +0600
+
+It was downloaded from: http://ugene.unipro.ru/download.html
+
+Modifications to the original source package:
+ The following directories have been removed:
+ ./installer/linux
+ ./installer/macosx
+ ./installer/windows
+ ./src/libs_3rdparty/zlib
+ since they contain useless for this package data.
+
+Upstream Author: UniPro <ugene at unipro.ru>
+
+Copyright:
+ Copyright (C) 2008-2011 by UniPro <ugene at unipro.ru>
+
+License:
+ This suite of programs is free software. You can redistribute it
+ and/or modify it under the terms of the GNU General Public License as
+ published by the Free Software Foundation; either version 2 of the
+ License, or (at your option) any later version.
+
+ In other words, you are free to modify, copy, or redistribute this
+ source code and its documentation in any way you like, but you must
+ distribute all derivative versions as free software under the same
+ terms that I've provided my code to you (i.e. the GNU General Public
+ License). This precludes any use of the code in proprietary or
+ commercial software unless your source code is made freely available.
+
+ If you wish to use Unipro UGENE code under a different Open Source
+ license that's not compatible with the GPL (like the Artistic License, BSD
+ license, or the Netscape Public License), please contact us
+ (ugene at unipro.ru) for permission.
+
+ Incorporation into commercial software under non-GPL terms is possible
+ by obtaining a specially licensed version from Unipro.
+ Contact 'ugene at unipro.ru' to arrange licensing terms.
+
+ This software is distributed in the hope that it will be useful, but
+ WITHOUT ANY WARRANTY; without even the implied warranty of
+ MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
+ General Public License for more details.
+
+ You should have received a copy of the GNU General Public License
+ along with this Unipro UGENE release, in the file LICENSE;
+ if not, write to the Free Software Foundation, Inc.,
+ 51 Franklin St, Fifth Floor, Boston, MA 02110-1301, USA.
+
+ See /usr/share/common-licenses/GPL for the complete text of the GPL
+
+
+Files: src/corelibs/U2Formats/src/ABIFormat.cpp
+ src/corelibs/U2Formats/src/SCFFormat.cpp
+ src/corelibs/U2Formats/src/IOLibUtils.cpp
+Copyright: 1994 Medical Research Council. All rights reserved.
+License:
+ Permission to use, copy, modify and distribute this software and its
+ documentation for any purpose is hereby granted without fee, provided that
+ this copyright and notice appears in all copies.
+
+ MRC disclaims all warranties with regard to this software.
+
+
+The File src/plugins_3rdparty/hmm2/src/hmmer2/sre_string.cpp
+ Copyright (c) 1998 Todd C. Miller <Todd.Miller at courtesan.com>
+
+ Permission to use, copy, modify, and distribute this software for any
+ purpose with or without fee is hereby granted, provided that the above
+ copyright notice and this permission notice appear in all copies.
+
+ THE SOFTWARE IS PROVIDED "AS IS" AND THE AUTHOR DISCLAIMS ALL WARRANTIES
+ WITH REGARD TO THIS SOFTWARE INCLUDING ALL IMPLIED WARRANTIES OF
+ MERCHANTABILITY AND FITNESS. IN NO EVENT SHALL THE AUTHOR BE LIABLE FOR
+ ANY SPECIAL, DIRECT, INDIRECT, OR CONSEQUENTIAL DAMAGES OR ANY DAMAGES
+ WHATSOEVER RESULTING FROM LOSS OF USE, DATA OR PROFITS, WHETHER IN AN
+ ACTION OF CONTRACT, NEGLIGENCE OR OTHER TORTIOUS ACTION, ARISING OUT OF
+ OR IN CONNECTION WITH THE USE OR PERFORMANCE OF THIS SOFTWARE.
+
+
+The Files in src/plugins_3rdparty/hmm2
+ HMMER - Biological sequence analysis with profile hidden Markov models
+ Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
+
+ This suite of programs is free software. You can redistribute it
+ and/or modify it under the terms of the GNU General Public License as
+ published by the Free Software Foundation; either version 2 of the
+ License, or (at your option) any later version.
+
+ In other words, you are free to modify, copy, or redistribute this
+ source code and its documentation in any way you like, but you must
+ distribute all derivative versions as free software under the same
+ terms that I've provided my code to you (i.e. the GNU General Public
+ License). This precludes any use of the code in proprietary or
+ commercial software unless your source code is made freely available.
+
+ If you wish to use HMMER code under a different Open Source license
+ that's not compatible with the GPL (like the Artistic License, BSD
+ license, or the Netscape Public License), please contact me
+ (eddy at genetics.wustl.edu) for permission.
+
+ Incorporation into commercial software under non-GPL terms is possible
+ by obtaining a specially licensed version from Washington University
+ School of Medicine. Contact Jack Pincus (jhpincus at cris.com) to arrange
+ licensing terms.
+
+ This software is distributed in the hope that it will be useful, but
+ WITHOUT ANY WARRANTY; without even the implied warranty of
+ MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
+ General Public License for more details.
+
+ You should have received a copy of the GNU General Public License
+ along with this HMMER release, in the file LICENSE; if not, write to
+ the Free Software Foundation, Inc.,
+ 51 Franklin St, Fifth Floor, Boston, MA 02110-1301, USA.
+
+ See /usr/share/common-licenses/GPL for the complete text of the GPL
+
+Note:
+The Files in src/plugins_3rdparty/uhmmer/src/u_spu and
+ src/plugins_3rdparty/uhmmer/src/uhmmsearch_cell.cpp
+ are modified sources from the HMMER-Cell project
+ (ftp://selab.janelia.org/pub/software/hmmer/contrib-2.3.2/HMMerCell_src_02272008.tar.gz)
+
+ Original Copyright: 2008, International Business Machines Corporation
+ Authors: Kursad Albayraktaroglu, Jizhu Lu
+
+ This files are released under the terms of GPL (v2 or any later version).
+
+
+The Files in src/plugins_3rdparty/umuscle/src/muscle
+ are PUBLIC DOMAIN (see http://www.drive5.com/muscle/license.htm)
+
+
+The Files src/plugins_3rdparty/psipred/src/seq2mtx.cpp
+ src/plugins_3rdparty/psipred/src/sspred_avpred.cpp
+ src/plugins_3rdparty/psipred/src/sspred_hmulti.cpp
+ Copyright (C) 2000 D.T. Jones
+ These files are distributed under the terms of custom GPL-compatible
+ license. See src/plugins_3rdparty/psipred/src/license for details.
+
+
+The Files in src/plugins_3rdparty/primer3/src/primer3_core
+ Copyright (c) 1996,1997,1998,1999,2000,2001,2004,2006,2007
+ Whitehead Institute for Biomedical Research, Steve Rozen
+ (http://jura.wi.mit.edu/rozen), and Helen Skaletsky
+ All rights reserved.
+
+ Redistribution and use in source and binary forms, with or without
+ modification, are permitted provided that the following conditions are
+ met:
+
+ * Redistributions of source code must retain the above copyright
+ notice, this list of conditions and the following disclaimer.
+ * Redistributions in binary form must reproduce the above
+ copyright notice, this list of conditions and the following disclaimer
+ in the documentation and/or other materials provided with the
+ distribution.
+ * Neither the names of the copyright holders nor contributors may
+ be used to endorse or promote products derived from this software
+ without specific prior written permission.
+
+ THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS
+ "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT
+ LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR
+ A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT
+ OWNERS OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL,
+ SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT
+ LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE,
+ DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY
+ THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
+ (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE
+ OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
+
+
+The Files in src/plugins_3rdparty/hmm3/src/hmmer3
+(except files in src/plugins_3rdparty/hmm3/src/hmmer3/easel)
+ Copyright (C) 2009 Howard Hughes Medical Institute.
+ Other copyrights also apply. See the
+ src/plugins_3rdparty/hmm3/src/hmmer3/COPYRIGHT file for a full list.
+
+ HMMER is distributed under the terms of the GNU General Public License
+ (GPLv3).
+
+
+The Files in src/plugins_3rdparty/hmm3/src/hmmer3/easel
+ Copyright (C) 2009 Howard Hughes Medical Institute.
+ Other copyrights also apply. See the
+ src/plugins_3rdparty/hmm3/src/hmmer3/easel/COPYRIGHT file for a full list.
+
+ Easel is distributed under the Janelia Farm Software License, a BSD
+ license. See the src/plugins_3rdparty/hmm3/src/hmmer3/easel/LICENSE file
+ for more details.
+
+
+The Files in src/plugins/biostruct3d_view/src/gl2ps
+ GL2PS, an OpenGL to PostScript Printing Library
+ Copyright (C) 1999-2006 Christophe Geuzaine <geuz at geuz.org>
+
+ This program is free software; you can redistribute it and/or
+ modify it under the terms of either:
+
+ a) the GNU Library General Public License as published by the Free
+ Software Foundation, either version 2 of the License, or (at your
+ option) any later version; or
+
+ b) the GL2PS License as published by Christophe Geuzaine, either
+ version 2 of the License, or (at your option) any later version.
+
+ This program is distributed in the hope that it will be useful, but
+ WITHOUT ANY WARRANTY; without even the implied warranty of
+ MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See either
+ the GNU Library General Public License or the GL2PS License for
+ more details.
+
+
+The Files in src/plugins_3rdparty/ball/include and
+ src/plugins_3rdparty/ball/source
+ Copyright (C) Oliver Kohlbacher, Hans-Peter Lenhof, Andreas Hildebrandt
+ and others 1996-2009
+
+ This library is free software; you can redistribute it and/or
+ modify it under the terms of the GNU Lesser General Public
+ License as published by the Free Software Foundation; either
+ version 2.1 of the License, or (at your option) any later version.
+
+ This library is distributed in the hope that it will be useful,
+ but WITHOUT ANY WARRANTY; without even the implied warranty of
+ MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
+ Lesser General Public License for more details.
+
+
+The Files in src/plugins_3rdparty/phylyp/src
+ version 3.6. (c) Copyright 1993-2004 by the University of Washington.
+ Written by Joseph Felsenstein, Akiko Fuseki, Sean Lamont, and Andrew Keeffe.
+ Permission is granted to copy and use this program provided no fee is
+ charged for it and provided that this copyright notice is not removed.
+
+
+The Files in src/plugins_3rdparty/kalign/src
+
+ Released under GPL - see the 'COPYING' file
+
+ Copyright (C) 2006 Timo Lassmann <timolassmann at gmail.com>
+
+ This program is free software; you can redistribute it and/or modify
+ it under the terms of the GNU General Public License as published by
+ the Free Software Foundation; either version 2 of the License, or
+ any later version.
+
+ This program is distributed in the hope that it will be useful,
+ but WITHOUT ANY WARRANTY; without even the implied warranty of
+ MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ GNU General Public License for more details.
+
+ You should have received a copy of the GNU General Public License
+ along with this program; if not, write to the Free Software
+ Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
+
+ Please send bug reports, comments etc. to:
+ timolassmann at gmail.com
+
+
+The Files in src/plugins_3rdparty/bowtie/src/bowtie/SeqAn-1.1
+ Copyright (C) 2007
+
+ This library is free software; you can redistribute it and/or
+ modify it under the terms of the GNU Lesser General Public
+ License as published by the Free Software Foundation; either
+ version 3 of the License, or (at your option) any later version.
+
+ This library is distributed in the hope that it will be useful,
+ but WITHOUT ANY WARRANTY; without even the implied warranty of
+ MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
+ Lesser General Public License for more details.
+
+
+The Files in src/plugins_3rdparty/bowtie/src/bowtie/visualstudio
+ ISO C9x compliant inttypes.h for Microsoft Visual Studio
+ Based on ISO/IEC 9899:TC2 Committee draft (May 6, 2005) WG14/N1124
+
+ Copyright (c) 2006 Alexander Chemeris
+
+ Redistribution and use in source and binary forms, with or without
+ modification, are permitted provided that the following conditions are met:
+
+ 1. Redistributions of source code must retain the above copyright notice,
+ this list of conditions and the following disclaimer.
+
+ 2. Redistributions in binary form must reproduce the above copyright
+ notice, this list of conditions and the following disclaimer in the
+ documentation and/or other materials provided with the distribution.
+
+ 3. The name of the author may be used to endorse or promote products
+ derived from this software without specific prior written permission.
+
+ THIS SOFTWARE IS PROVIDED BY THE AUTHOR ``AS IS'' AND ANY EXPRESS OR IMPLIED
+ WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF
+ MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO
+ EVENT SHALL THE AUTHOR BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL,
+ SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO,
+ PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS;
+ OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY,
+ WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR
+ OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF
+ ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
+
+
+The Files in src/plugins_3rdparty/bowtie/src/bowtie
+ This files are distributed under Artistic License. See the 'COPYING' file
+ for details.
+
+
+The Files in src/libs_3rdparty/sqlite3/src
+
+ The author disclaims copyright to this source code. In place of
+ a legal notice, here is a blessing:
+
+ May you do good and not evil.
+ May you find forgiveness for yourself and forgive others.
+ May you share freely, never taking more than you give.
+
+
+The Files src/include/opencl/legacy/cl.h
+ src/include/opencl/legacy/cl_platform.h
+ Copyright (c) 2008-2010 The Khronos Group Inc.
+
+ Permission is hereby granted, free of charge, to any person obtaining a
+ copy of this software and/or associated documentation files (the
+ "Materials"), to deal in the Materials without restriction, including
+ without limitation the rights to use, copy, modify, merge, publish,
+ distribute, sublicense, and/or sell copies of the Materials, and to
+ permit persons to whom the Materials are furnished to do so, subject to
+ the following conditions:
+
+ The above copyright notice and this permission notice shall be included
+ in all copies or substantial portions of the Materials.
+
+ THE MATERIALS ARE PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND,
+ EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF
+ MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT.
+ IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY
+ CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT,
+ TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE
+ MATERIALS OR THE USE OR OTHER DEALINGS IN THE MATERIALS.
+
+
+The Files src/corelibs/U2Private/src/StackWalker.cpp
+ src/corelibs/U2Private/src/StackWalker.cpp
+ Copyright (c) 2005-2011, Jochen Kalmbach
+ All rights reserved.
+
+ Redistribution and use in source and binary forms, with or without modification,
+ are permitted provided that the following conditions are met:
+
+ Redistributions of source code must retain the above copyright notice,
+ this list of conditions and the following disclaimer.
+ Redistributions in binary form must reproduce the above copyright notice,
+ this list of conditions and the following disclaimer in the documentation
+ and/or other materials provided with the distribution.
+ Neither the name of Jochen Kalmbach nor the names of its contributors may be
+ used to endorse or promote products derived from this software without
+ specific prior written permission.
+ THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
+ AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO,
+ THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
+ ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE LIABLE
+ FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
+ (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES;
+ LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND
+ ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
+ (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
+ SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
+
+
+
+
+Packaging:
+ Copyright (C) 2008-2011 by Ivan Efremov <iefremov at unipro.ru>
+ released under the GPL.
Added: trunk/packages/ugene/trunk/debian/rules
===================================================================
--- trunk/packages/ugene/trunk/debian/rules (rev 0)
+++ trunk/packages/ugene/trunk/debian/rules 2011-11-02 10:02:09 UTC (rev 8379)
@@ -0,0 +1,76 @@
+#!/usr/bin/make -f
+
+export DH_OPTIONS
+
+UPSTREAM_NAME=ugene
+UPSTREAM_VERSION=$(shell uscan --dehs | sed -n 's/.*<upstream-version>\(.*\)<\/upstream-version>.*/\1/p')
+UPSTREAM_FOLDER=$(UPSTREAM_NAME)-$(UPSTREAM_VERSION)
+
+get-orig-source:
+ uscan --force-download --no-symlink
+ tar -xzf ../$(UPSTREAM_NAME)-$(UPSTREAM_VERSION).tar.gz
+ rm -rf $(UPSTREAM_FOLDER)/installer/linux
+ rm -rf $(UPSTREAM_FOLDER)/installer/macosx
+ rm -rf $(UPSTREAM_FOLDER)/installer/windows
+ rm -rf $(UPSTREAM_FOLDER)/src/libs_3rdparty/zlib
+ GZIP="-9" tar -czf ../$(UPSTREAM_NAME)_$(UPSTREAM_VERSION)+repack.orig.tar.gz $(UPSTREAM_FOLDER)
+ rm -rf $(UPSTREAM_FOLDER)
+
+
+build: build-arch build-indep
+
+build-arch: build-arch-stamp
+build-arch-stamp:
+ qmake-qt4 -r
+ $(MAKE)
+ touch $@
+
+build-indep: build-indep-stamp
+build-indep-stamp:
+ touch $@
+
+clean:
+ dh_testdir
+ dh_testroot
+ rm -f build-arch-stamp build-indep-stamp
+ [ ! -f Makefile ] || $(MAKE) distclean
+ dh_clean
+
+install: install-indep install-arch
+install-indep:
+ dh_testdir
+ dh_testroot
+ dh_clean -k -i
+ dh_install -i data /usr/share/ugene
+
+install-arch:
+ dh_testdir
+ dh_testroot
+ dh_clean -k -s
+ dh_installdirs -s
+
+ $(MAKE) INSTALL_ROOT=$$(pwd)/debian/ugene install
+ rm -rf debian/ugene/usr/share/ugene
+
+binary-common:
+ dh_testdir
+ dh_testroot
+ dh_installchangelogs debian/changelog
+ dh_installdocs
+ dh_strip
+ dh_compress
+ dh_fixperms
+ dh_installdeb
+ export LD_LIBRARY_PATH=$$(pwd)/debian/ugene/usr/lib/ugene:$$(pwd)/debian/ugene/usr/lib64/ugene && dh_shlibdeps
+ dh_gencontrol
+ dh_md5sums
+ dh_builddeb
+
+binary-indep: build-indep install-indep
+ $(MAKE) -f debian/rules DH_OPTIONS=-i binary-common
+
+binary-arch: build-arch install-arch
+ $(MAKE) -f debian/rules DH_OPTIONS=-s binary-common
+
+binary: binary-arch binary-indep
+.PHONY: build clean binary-indep binary-arch binary install install-indep install-arch
Property changes on: trunk/packages/ugene/trunk/debian/rules
___________________________________________________________________
Added: svn:executable
+ *
Added: trunk/packages/ugene/trunk/debian/source/format
===================================================================
--- trunk/packages/ugene/trunk/debian/source/format (rev 0)
+++ trunk/packages/ugene/trunk/debian/source/format 2011-11-02 10:02:09 UTC (rev 8379)
@@ -0,0 +1 @@
+3.0 (quilt)
Added: trunk/packages/ugene/trunk/debian/watch
===================================================================
--- trunk/packages/ugene/trunk/debian/watch (rev 0)
+++ trunk/packages/ugene/trunk/debian/watch 2011-11-02 10:02:09 UTC (rev 8379)
@@ -0,0 +1,4 @@
+version=3
+opts=dversionmangle=s/\+repack// \
+http://ugene.unipro.ru/download.html \
+ downloads/ugene-([\d.]*)\.tar\.gz debian uupdate
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