[med-svn] r8384 - trunk/packages/gmod/chado/trunk/debian/patches

[olivier sallou]

Author: osallou-guest
Date: 2011-11-02 12:49:27 +0000 (Wed, 02 Nov 2011)
New Revision: 8384

Modified:
   trunk/packages/gmod/chado/trunk/debian/patches/fix_perl_headers
   trunk/packages/gmod/chado/trunk/debian/patches/force_SIMPLE
Log:
fix DEP headers and fix some bad perl path

Modified: trunk/packages/gmod/chado/trunk/debian/patches/fix_perl_headers
===================================================================
--- trunk/packages/gmod/chado/trunk/debian/patches/fix_perl_headers	2011-11-02 12:48:56 UTC (rev 8383)
+++ trunk/packages/gmod/chado/trunk/debian/patches/fix_perl_headers	2011-11-02 12:49:27 UTC (rev 8384)
@@ -1,3 +1,7 @@
+Subject: fix interpreter path
+Description: default perl interpreter path is wrong
+Author: Olivier Sallou <olivier.sallou at irisa.fr>
+Last-Updated: 02/11/2011
 --- a/bin/gmod_bulk_load_pubmed.pl
 +++ b/bin/gmod_bulk_load_pubmed.pl
 @@ -1,4 +1,4 @@
@@ -54,3 +58,59 @@
  
  use strict;
  
+--- a/load/bin/bulk_load_gff3.PLS
++++ b/load/bin/bulk_load_gff3.PLS
+@@ -1,4 +1,4 @@
+-#!perl -w
++#!/usr/bin/perl -w
+ 
+ use Config;
+ use File::Basename qw(&basename &dirname);
+--- a/load/bin/load_gff3.PLS
++++ b/load/bin/load_gff3.PLS
+@@ -1,4 +1,4 @@
+-#!perl -w
++#!/usr/bin/perl -w
+ 
+ use Config;
+ use File::Basename qw(&basename &dirname);
+--- a/soi/cgi/get_xml.pl
++++ b/soi/cgi/get_xml.pl
+@@ -1,4 +1,4 @@
+-#!/usr/local/bin/perl
++#!/usr/bin/perl
+ 
+ BEGIN{
+     eval{do "config.pl"};
+--- a/soi/scripts/dump_fasta.pl
++++ b/soi/scripts/dump_fasta.pl
+@@ -1,4 +1,4 @@
+-#!/usr/local/bin/perl 
++#!/usr/bin/perl 
+ 
+ # generegion_soi.pl
+ 
+--- a/soi/scripts/dump_segment.pl
++++ b/soi/scripts/dump_segment.pl
+@@ -1,4 +1,4 @@
+-#!/usr/local/bin/perl
++#!/usr/bin/perl
+ 
+ use FindBin qw($RealBin);
+ use lib (($ENV{SOI_ROOT}) ||
+--- a/soi/scripts/generegion.pl
++++ b/soi/scripts/generegion.pl
+@@ -1,4 +1,4 @@
+-#!/usr/local/bin/perl 
++#!/usr/bin/perl 
+ 
+ # generegion_soi.pl
+ 
+--- a/soi/t/t_soi_parse_intersect
++++ b/soi/t/t_soi_parse_intersect
+@@ -1,4 +1,4 @@
+-#!/usr/local/bin/perl -w
++#!/usr/bin/perl -w
+ 
+ use lib "../";
+ BEGIN {

Modified: trunk/packages/gmod/chado/trunk/debian/patches/force_SIMPLE
===================================================================
--- trunk/packages/gmod/chado/trunk/debian/patches/force_SIMPLE	2011-11-02 12:48:56 UTC (rev 8383)
+++ trunk/packages/gmod/chado/trunk/debian/patches/force_SIMPLE	2011-11-02 12:49:27 UTC (rev 8384)
@@ -1,3 +1,7 @@
+Subject: remove questions at setup
+Description: Remove "simple install" question from setup
+Author: Olivier Sallou <olivier.sallou at irisa.fr>
+Last-Updated: 02/11/2011
 --- a/Makefile.PL
 +++ b/Makefile.PL
 @@ -234,9 +234,10 @@