[med-svn] r8395 - in trunk/packages/python-biopython/tags: . 1.58-1/debian
Philipp Benner
philipp at alioth.debian.org
Wed Nov 2 20:27:24 UTC 2011
Author: philipp
Date: 2011-11-02 20:27:24 +0000 (Wed, 02 Nov 2011)
New Revision: 8395
Added:
trunk/packages/python-biopython/tags/1.58-1/
trunk/packages/python-biopython/tags/1.58-1/debian/changelog
trunk/packages/python-biopython/tags/1.58-1/debian/control
trunk/packages/python-biopython/tags/1.58-1/debian/rules
Removed:
trunk/packages/python-biopython/tags/1.58-1/debian/changelog
trunk/packages/python-biopython/tags/1.58-1/debian/control
trunk/packages/python-biopython/tags/1.58-1/debian/rules
Log:
[svn-buildpackage] Tagging python-biopython 1.58-1
Deleted: trunk/packages/python-biopython/tags/1.58-1/debian/changelog
===================================================================
--- trunk/packages/python-biopython/trunk/debian/changelog 2011-11-02 19:00:39 UTC (rev 8393)
+++ trunk/packages/python-biopython/tags/1.58-1/debian/changelog 2011-11-02 20:27:24 UTC (rev 8395)
@@ -1,235 +0,0 @@
-python-biopython (1.57-1) unstable; urgency=low
-
- * New upstream release (Closes: #585282).
-
- -- Philipp Benner <philipp at debian.org> Sun, 10 Apr 2011 17:58:01 +0000
-
-python-biopython (1.56-1) unstable; urgency=low
-
- * New upstream release.
-
- -- Philipp Benner <philipp at debian.org> Thu, 02 Dec 2010 17:30:09 +0000
-
-python-biopython (1.54-1) unstable; urgency=low
-
- * New upstream release.
-
- -- Philipp Benner <philipp at debian.org> Fri, 28 May 2010 00:06:43 +0200
-
-python-biopython (1.53-1) unstable; urgency=low
-
- * New upstream release.
-
- -- Philipp Benner <philipp at debian.org> Mon, 21 Dec 2009 15:30:37 +0000
-
-python-biopython (1.52-1) unstable; urgency=low
-
- * New upstream release.
-
- -- Philipp Benner <philipp at debian.org> Wed, 30 Sep 2009 10:16:03 +0000
-
-python-biopython (1.51final-2) unstable; urgency=low
-
- * Merged patch from ubuntu to make the package ready for
- python2.6 (Closes: #543236).
-
- -- Philipp Benner <philipp at debian.org> Mon, 24 Aug 2009 09:29:27 +0000
-
-python-biopython (1.51final-1) unstable; urgency=low
-
- * New upstream release
- * debian/control: suggesting muscle, clustalw, mafft, emboss, and
- blast2 for installation
-
- -- Philipp Benner <philipp at debian.org> Wed, 19 Aug 2009 10:41:19 +0000
-
-python-biopython (1.51b-2) unstable; urgency=low
-
- * Dropped python-biopython-martel.
- * Dropped dependency on python-egenix-mxtexttools.
- * Removed DM-Upload-Allowed: yes.
-
- -- Philipp Benner <philipp at debian.org> Tue, 11 Aug 2009 19:47:52 +0000
-
-python-biopython (1.51b-1) unstable; urgency=low
-
- * New upstream release
- * debian/control:
- - moved python-martel back to section python (python packages do not
- use section oldlibs)
- * debian/patches/02-fix-wise-test.patch
- - removed (merged with upstream)
- * debian/control:
- - Changed the description of python-biopython-sql according to Peter Cock's
- suggestions.
- [Charles Plessy]
-
- -- Philipp Benner <pbenner at uni-osnabrueck.de> Sat, 27 Jun 2009 15:14:52 +0000
-
-python-biopython (1.49-1) unstable; urgency=low
-
- * New upstream release.
- - uses NumPy rather than its precursor Numeric (Closes: #478457)
- - Martel, Bio.Mindy, Bio.MetaTool, Bio.EUtils, Bio.Saf, Bio.NBRF, and
- Bio.IntelliGenetics are deprecated.
- - Bio.PubMed and the online code in Bio.GenBank are now considered obsolete
- and will be deprecated in a future release.
- - Bio.Fasta is also considered to be obsolete and will eventually be
- deprecated.
- * debian/control:
- - added myself as Uploader.
- - depends on python-numpy instead of python-numeric-ext.
- - moved python-martel to oldlibs section, priority extra as it is
- deprecated, and indicate this in the description.
- - build-depend on python-mysqldb and wise for the tests after building.
- * Use Debhelper 7 (debian/co{ntrol,mpat}).
- * debian/copyright: added myself to the Hall of Fame and updated to latest
- draft of the machine-readable format.
- * debian/watch: makes beta versions lower by prepending a tilde between
- numbers and letters (1.49b -> 1.49~b).
- * mmCIF support enabled:
- - debian/patches/01-enable-mmCIF.patch: as the name indicates ;)
- - debian/rules: patch and unpatch through /usr/share/quilt/quilt.make.
- - debian/control: build-depends on quilt.
- * debian/python-biopython-doc.doc-base: corrected index name that was changed
- upstream.
- * debian/patches/02-fix-wise-test.patch: prevents tests failing with Debian's
- version of Wise.
- * debian/rules: perform tests after build.
-
- -- Charles Plessy <plessy at debian.org> Fri, 23 Jan 2009 22:19:50 +0900
-
-python-biopython (1.47-1) unstable; urgency=low
-
- * New upstream release
- * Standards version 3.8.0
-
- -- Philipp Benner <pbenner at uni-osnabrueck.de> Sun, 03 Aug 2008 14:29:33 +0200
-
-python-biopython (1.45-3) unstable; urgency=low
-
- * Removed dependency on python-numeric-ext since it is already in
- the recommends field
-
- -- Philipp Benner <pbenner at uni-osnabrueck.de> Sun, 01 Jun 2008 10:34:48 +0200
-
-python-biopython (1.45-2) unstable; urgency=low
-
- * Add dependency on python-numeric-ext (Bio.PDB uses MLab from this package)
-
- -- Morten Kjeldgaard <mok at bioxray.au.dk> Wed, 23 Apr 2008 00:01:16 +0200
-
-python-biopython (1.45-1) unstable; urgency=low
-
- * New upstream release.
- * Added doc-base.
-
- -- Philipp Benner <pbenner at uni-osnabrueck.de> Sat, 29 Mar 2008 12:20:41 +0100
-
-python-biopython (1.44-3) unstable; urgency=low
-
- * New maintainer e-mail address.
- * debian/control: Added DM-Upload-Allowed: yes.
-
- -- Philipp Benner <pbenner at uni-osnabrueck.de> Mon, 14 Jan 2008 18:35:18 +0100
-
-python-biopython (1.44-2) unstable; urgency=low
-
- * Moved suggested package python-numeric-ext to recommends field
- (Closes: #452379).
- * Moved wise from recommends to suggests field.
- * Removed package tags from debian/control.
- * Added homepage field to debian/control.
- * Changed maintainer to Debian-Med Packaging Team.
- * Removed .DS_Store.gz file from doc package.
-
- -- Philipp Benner <mail at philipp-benner.de> Thu, 22 Nov 2007 13:35:00 +0100
-
-python-biopython (1.44-1) unstable; urgency=low
-
- * New upstream release.
- * Machine interpretable copyright file.
-
- -- Philipp Benner <mail at philipp-benner.de> Fri, 16 Nov 2007 16:49:11 +0100
-
-python-biopython (1.43-2) unstable; urgency=low
-
- * Rebuild for python-2.5 support (Closes: #424025).
-
- -- Philipp Benner <mail at philipp-benner.de> Thu, 14 Jun 2007 21:40:18 +0200
-
-python-biopython (1.43-1) unstable; urgency=low
-
- * New upstream release
- * Adapted debian-med tags
-
- -- Philipp Benner <mail at philipp-benner.de> Tue, 27 Mar 2007 17:45:58 +0200
-
-python-biopython (1.42-2) unstable; urgency=low
-
- * uscan support
- * package tags
-
- -- Philipp Benner <mail at philipp-benner.de> Sat, 9 Sep 2006 14:39:18 +0200
-
-python-biopython (1.42-1) unstable; urgency=low
-
- * New upstream release
-
- -- Philipp Benner <mail at philipp-benner.de> Sat, 22 Jul 2006 01:30:51 +0200
-
-python-biopython (1.41-2.1) unstable; urgency=low
-
- * Non-maintainer upload.
- * Update package to the last python policy (Closes: #373515).
-
- -- Pierre Habouzit <madcoder at debian.org> Fri, 30 Jun 2006 13:45:39 +0200
-
-python-biopython (1.41-2) unstable; urgency=low
-
- * suggests python-numeric-ext
- * now with KDTree
-
- -- Philipp Benner <mail at philipp-benner.de> Mon, 20 Feb 2006 21:02:18 +0100
-
-python-biopython (1.41-1) unstable; urgency=low
-
- * New upstream release
-
- -- Philipp Benner <mail at philipp-benner.de> Sat, 5 Nov 2005 20:15:03 +0100
-
-python-biopython (1.40b-3) unstable; urgency=low
-
- * now using compatibility level 4
- * removed obsolete dependencies (closes: #328142)
-
- -- Philipp Benner <mail at philipp-benner.de> Wed, 14 Sep 2005 12:06:06 +0200
-
-python-biopython (1.40b-2) unstable; urgency=low
-
- * Function `mmcif_get_string' implicitly converted to pointer
- (closes: #326403)
- * now standards version 3.6.2
-
- -- Philipp Benner <mail at philipp-benner.de> Wed, 7 Sep 2005 09:53:30 +0200
-
-python-biopython (1.40b-1) unstable; urgency=low
-
- * new release
- * dropped support for python2.2
-
- -- Philipp Benner <mail at philipp-benner.de> Tue, 05 Apr 2005 20:55:59 +0200
-
-python-biopython (1.30-2) unstable; urgency=low
-
- * Fixed bugs in debian/rules and debian/control which prevented
- porting the package.
- * Using -fPIC to build shared lib KDTree. (closes: #278959)
-
- -- Philipp Benner <mail at philipp-benner.de> Sun, 10 Oct 2004 19:48:04 +0200
-
-python-biopython (1.30-1) unstable; urgency=low
-
- * Initial Release. (closes: #157402)
-
- -- Philipp Benner <mail at philipp-benner.de> Tue, 21 Sep 2004 20:02:00 +0200
Copied: trunk/packages/python-biopython/tags/1.58-1/debian/changelog (from rev 8394, trunk/packages/python-biopython/trunk/debian/changelog)
===================================================================
--- trunk/packages/python-biopython/tags/1.58-1/debian/changelog (rev 0)
+++ trunk/packages/python-biopython/tags/1.58-1/debian/changelog 2011-11-02 20:27:24 UTC (rev 8395)
@@ -0,0 +1,243 @@
+python-biopython (1.58-1) unstable; urgency=low
+
+ * New upstream release.
+ * debian/rules: added targets build-arch and build-indep.
+ * debian/control: Standards version 3.9.2.
+
+ -- Philipp Benner <philipp at debian.org> Wed, 02 Nov 2011 19:51:49 +0000
+
+python-biopython (1.57-1) unstable; urgency=low
+
+ * New upstream release (Closes: #585282).
+
+ -- Philipp Benner <philipp at debian.org> Sun, 10 Apr 2011 17:58:01 +0000
+
+python-biopython (1.56-1) unstable; urgency=low
+
+ * New upstream release.
+
+ -- Philipp Benner <philipp at debian.org> Thu, 02 Dec 2010 17:30:09 +0000
+
+python-biopython (1.54-1) unstable; urgency=low
+
+ * New upstream release.
+
+ -- Philipp Benner <philipp at debian.org> Fri, 28 May 2010 00:06:43 +0200
+
+python-biopython (1.53-1) unstable; urgency=low
+
+ * New upstream release.
+
+ -- Philipp Benner <philipp at debian.org> Mon, 21 Dec 2009 15:30:37 +0000
+
+python-biopython (1.52-1) unstable; urgency=low
+
+ * New upstream release.
+
+ -- Philipp Benner <philipp at debian.org> Wed, 30 Sep 2009 10:16:03 +0000
+
+python-biopython (1.51final-2) unstable; urgency=low
+
+ * Merged patch from ubuntu to make the package ready for
+ python2.6 (Closes: #543236).
+
+ -- Philipp Benner <philipp at debian.org> Mon, 24 Aug 2009 09:29:27 +0000
+
+python-biopython (1.51final-1) unstable; urgency=low
+
+ * New upstream release
+ * debian/control: suggesting muscle, clustalw, mafft, emboss, and
+ blast2 for installation
+
+ -- Philipp Benner <philipp at debian.org> Wed, 19 Aug 2009 10:41:19 +0000
+
+python-biopython (1.51b-2) unstable; urgency=low
+
+ * Dropped python-biopython-martel.
+ * Dropped dependency on python-egenix-mxtexttools.
+ * Removed DM-Upload-Allowed: yes.
+
+ -- Philipp Benner <philipp at debian.org> Tue, 11 Aug 2009 19:47:52 +0000
+
+python-biopython (1.51b-1) unstable; urgency=low
+
+ * New upstream release
+ * debian/control:
+ - moved python-martel back to section python (python packages do not
+ use section oldlibs)
+ * debian/patches/02-fix-wise-test.patch
+ - removed (merged with upstream)
+ * debian/control:
+ - Changed the description of python-biopython-sql according to Peter Cock's
+ suggestions.
+ [Charles Plessy]
+
+ -- Philipp Benner <pbenner at uni-osnabrueck.de> Sat, 27 Jun 2009 15:14:52 +0000
+
+python-biopython (1.49-1) unstable; urgency=low
+
+ * New upstream release.
+ - uses NumPy rather than its precursor Numeric (Closes: #478457)
+ - Martel, Bio.Mindy, Bio.MetaTool, Bio.EUtils, Bio.Saf, Bio.NBRF, and
+ Bio.IntelliGenetics are deprecated.
+ - Bio.PubMed and the online code in Bio.GenBank are now considered obsolete
+ and will be deprecated in a future release.
+ - Bio.Fasta is also considered to be obsolete and will eventually be
+ deprecated.
+ * debian/control:
+ - added myself as Uploader.
+ - depends on python-numpy instead of python-numeric-ext.
+ - moved python-martel to oldlibs section, priority extra as it is
+ deprecated, and indicate this in the description.
+ - build-depend on python-mysqldb and wise for the tests after building.
+ * Use Debhelper 7 (debian/co{ntrol,mpat}).
+ * debian/copyright: added myself to the Hall of Fame and updated to latest
+ draft of the machine-readable format.
+ * debian/watch: makes beta versions lower by prepending a tilde between
+ numbers and letters (1.49b -> 1.49~b).
+ * mmCIF support enabled:
+ - debian/patches/01-enable-mmCIF.patch: as the name indicates ;)
+ - debian/rules: patch and unpatch through /usr/share/quilt/quilt.make.
+ - debian/control: build-depends on quilt.
+ * debian/python-biopython-doc.doc-base: corrected index name that was changed
+ upstream.
+ * debian/patches/02-fix-wise-test.patch: prevents tests failing with Debian's
+ version of Wise.
+ * debian/rules: perform tests after build.
+
+ -- Charles Plessy <plessy at debian.org> Fri, 23 Jan 2009 22:19:50 +0900
+
+python-biopython (1.47-1) unstable; urgency=low
+
+ * New upstream release
+ * Standards version 3.8.0
+
+ -- Philipp Benner <pbenner at uni-osnabrueck.de> Sun, 03 Aug 2008 14:29:33 +0200
+
+python-biopython (1.45-3) unstable; urgency=low
+
+ * Removed dependency on python-numeric-ext since it is already in
+ the recommends field
+
+ -- Philipp Benner <pbenner at uni-osnabrueck.de> Sun, 01 Jun 2008 10:34:48 +0200
+
+python-biopython (1.45-2) unstable; urgency=low
+
+ * Add dependency on python-numeric-ext (Bio.PDB uses MLab from this package)
+
+ -- Morten Kjeldgaard <mok at bioxray.au.dk> Wed, 23 Apr 2008 00:01:16 +0200
+
+python-biopython (1.45-1) unstable; urgency=low
+
+ * New upstream release.
+ * Added doc-base.
+
+ -- Philipp Benner <pbenner at uni-osnabrueck.de> Sat, 29 Mar 2008 12:20:41 +0100
+
+python-biopython (1.44-3) unstable; urgency=low
+
+ * New maintainer e-mail address.
+ * debian/control: Added DM-Upload-Allowed: yes.
+
+ -- Philipp Benner <pbenner at uni-osnabrueck.de> Mon, 14 Jan 2008 18:35:18 +0100
+
+python-biopython (1.44-2) unstable; urgency=low
+
+ * Moved suggested package python-numeric-ext to recommends field
+ (Closes: #452379).
+ * Moved wise from recommends to suggests field.
+ * Removed package tags from debian/control.
+ * Added homepage field to debian/control.
+ * Changed maintainer to Debian-Med Packaging Team.
+ * Removed .DS_Store.gz file from doc package.
+
+ -- Philipp Benner <mail at philipp-benner.de> Thu, 22 Nov 2007 13:35:00 +0100
+
+python-biopython (1.44-1) unstable; urgency=low
+
+ * New upstream release.
+ * Machine interpretable copyright file.
+
+ -- Philipp Benner <mail at philipp-benner.de> Fri, 16 Nov 2007 16:49:11 +0100
+
+python-biopython (1.43-2) unstable; urgency=low
+
+ * Rebuild for python-2.5 support (Closes: #424025).
+
+ -- Philipp Benner <mail at philipp-benner.de> Thu, 14 Jun 2007 21:40:18 +0200
+
+python-biopython (1.43-1) unstable; urgency=low
+
+ * New upstream release
+ * Adapted debian-med tags
+
+ -- Philipp Benner <mail at philipp-benner.de> Tue, 27 Mar 2007 17:45:58 +0200
+
+python-biopython (1.42-2) unstable; urgency=low
+
+ * uscan support
+ * package tags
+
+ -- Philipp Benner <mail at philipp-benner.de> Sat, 9 Sep 2006 14:39:18 +0200
+
+python-biopython (1.42-1) unstable; urgency=low
+
+ * New upstream release
+
+ -- Philipp Benner <mail at philipp-benner.de> Sat, 22 Jul 2006 01:30:51 +0200
+
+python-biopython (1.41-2.1) unstable; urgency=low
+
+ * Non-maintainer upload.
+ * Update package to the last python policy (Closes: #373515).
+
+ -- Pierre Habouzit <madcoder at debian.org> Fri, 30 Jun 2006 13:45:39 +0200
+
+python-biopython (1.41-2) unstable; urgency=low
+
+ * suggests python-numeric-ext
+ * now with KDTree
+
+ -- Philipp Benner <mail at philipp-benner.de> Mon, 20 Feb 2006 21:02:18 +0100
+
+python-biopython (1.41-1) unstable; urgency=low
+
+ * New upstream release
+
+ -- Philipp Benner <mail at philipp-benner.de> Sat, 5 Nov 2005 20:15:03 +0100
+
+python-biopython (1.40b-3) unstable; urgency=low
+
+ * now using compatibility level 4
+ * removed obsolete dependencies (closes: #328142)
+
+ -- Philipp Benner <mail at philipp-benner.de> Wed, 14 Sep 2005 12:06:06 +0200
+
+python-biopython (1.40b-2) unstable; urgency=low
+
+ * Function `mmcif_get_string' implicitly converted to pointer
+ (closes: #326403)
+ * now standards version 3.6.2
+
+ -- Philipp Benner <mail at philipp-benner.de> Wed, 7 Sep 2005 09:53:30 +0200
+
+python-biopython (1.40b-1) unstable; urgency=low
+
+ * new release
+ * dropped support for python2.2
+
+ -- Philipp Benner <mail at philipp-benner.de> Tue, 05 Apr 2005 20:55:59 +0200
+
+python-biopython (1.30-2) unstable; urgency=low
+
+ * Fixed bugs in debian/rules and debian/control which prevented
+ porting the package.
+ * Using -fPIC to build shared lib KDTree. (closes: #278959)
+
+ -- Philipp Benner <mail at philipp-benner.de> Sun, 10 Oct 2004 19:48:04 +0200
+
+python-biopython (1.30-1) unstable; urgency=low
+
+ * Initial Release. (closes: #157402)
+
+ -- Philipp Benner <mail at philipp-benner.de> Tue, 21 Sep 2004 20:02:00 +0200
Deleted: trunk/packages/python-biopython/tags/1.58-1/debian/control
===================================================================
--- trunk/packages/python-biopython/trunk/debian/control 2011-11-02 19:00:39 UTC (rev 8393)
+++ trunk/packages/python-biopython/tags/1.58-1/debian/control 2011-11-02 20:27:24 UTC (rev 8395)
@@ -1,60 +0,0 @@
-Source: python-biopython
-Priority: optional
-Section: python
-Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-Uploaders: Philipp Benner <philipp at debian.org>,
- Charles Plessy <plessy at debian.org>
-Build-Depends: debhelper (>= 7), quilt, python-all-dev, flex, python-support,
- python-reportlab, python-numpy,
-# For the purpose of the tests
- python-mysqldb, wise
-XS-Python-Version: >= 2.3
-Standards-Version: 3.9.1
-Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/python-biopython/trunk/?rev=0&sc=0
-Vcs-Svn: svn://svn.debian.org/svn/debian-med/trunk/packages/python-biopython/trunk/
-Homepage: http://biopython.org
-
-Package: python-biopython
-Architecture: any
-Depends: ${python:Depends}, ${shlibs:Depends}, ${misc:Depends}, python-numpy, python-reportlab
-Provides: ${python:Provides}
-Replaces: python2.3-biopython (<< 1.42-1), python2.4-biopython (<< 1.42-1)
-Conflicts: python2.3-biopython (<< 1.42-1), python2.4-biopython (<< 1.42-1)
-XB-Python-Version: ${python:Versions}
-Recommends: python-biopython-doc (= ${source:Version})
-Suggests: python-tk, wise, muscle, clustalw, mafft, emboss, blast2
-Description: Python library for bioinformatics
- The Biopython Project is an international association
- of developers of freely available Python tools for
- computational molecular biology.
- .
- It is a distributed collaborative effort to develop Python
- libraries and applications which address the needs of
- current and future work in bioinformatics. The source code
- is made available under the Biopython License, which is
- extremely liberal and compatible with almost every license
- in the world. We work along with the Open Bioinformatics
- Foundation, who generously provide web and CVS space for
- the project.
-
-Package: python-biopython-doc
-Section: doc
-Architecture: all
-Depends: ${misc:Depends}
-Recommends: python-biopython (= ${source:Version})
-Description: Documentation for the Biopython library
- Documentation and examples about how to use the Biopython
- library.
-
-Package: python-biopython-sql
-# Todo: add www.biosql.org as "External Ressource" on packages.debian.org when the infrastructure will provide a way to do so.
-Architecture: all
-Depends: ${python:Depends}, ${misc:Depends}, python-mysqldb, python-biopython
-Provides: ${python:Provides}
-Replaces: python2.3-biopython-sql (<< 1.42-1), python2.4-biopython-sql (<< 1.42-1)
-Conflicts: python2.3-biopython-sql (<< 1.42-1), python2.4-biopython-sql (<< 1.42-1)
-XB-Python-Version: ${python:Versions}
-Description: Biopython support for the BioSQL database schema
- This is the Biopython interface to a BioSQL database (see www.biosql.org
- for details). BioPerl, BioJava and BioRuby also provide their own BioSQL
- interfaces onto the same shared SQL schema.
Copied: trunk/packages/python-biopython/tags/1.58-1/debian/control (from rev 8394, trunk/packages/python-biopython/trunk/debian/control)
===================================================================
--- trunk/packages/python-biopython/tags/1.58-1/debian/control (rev 0)
+++ trunk/packages/python-biopython/tags/1.58-1/debian/control 2011-11-02 20:27:24 UTC (rev 8395)
@@ -0,0 +1,60 @@
+Source: python-biopython
+Priority: optional
+Section: python
+Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+Uploaders: Philipp Benner <philipp at debian.org>,
+ Charles Plessy <plessy at debian.org>
+Build-Depends: debhelper (>= 7), quilt, python-all-dev, flex, python-support,
+ python-reportlab, python-numpy,
+# For the purpose of the tests
+ python-mysqldb, wise
+XS-Python-Version: >= 2.3
+Standards-Version: 3.9.2
+Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/python-biopython/trunk/?rev=0&sc=0
+Vcs-Svn: svn://svn.debian.org/svn/debian-med/trunk/packages/python-biopython/trunk/
+Homepage: http://biopython.org
+
+Package: python-biopython
+Architecture: any
+Depends: ${python:Depends}, ${shlibs:Depends}, ${misc:Depends}, python-numpy, python-reportlab
+Provides: ${python:Provides}
+Replaces: python2.3-biopython (<< 1.42-1), python2.4-biopython (<< 1.42-1)
+Conflicts: python2.3-biopython (<< 1.42-1), python2.4-biopython (<< 1.42-1)
+XB-Python-Version: ${python:Versions}
+Recommends: python-biopython-doc (= ${source:Version})
+Suggests: python-tk, wise, muscle, clustalw, mafft, emboss, blast2
+Description: Python library for bioinformatics
+ The Biopython Project is an international association
+ of developers of freely available Python tools for
+ computational molecular biology.
+ .
+ It is a distributed collaborative effort to develop Python
+ libraries and applications which address the needs of
+ current and future work in bioinformatics. The source code
+ is made available under the Biopython License, which is
+ extremely liberal and compatible with almost every license
+ in the world. We work along with the Open Bioinformatics
+ Foundation, who generously provide web and CVS space for
+ the project.
+
+Package: python-biopython-doc
+Section: doc
+Architecture: all
+Depends: ${misc:Depends}
+Recommends: python-biopython (= ${source:Version})
+Description: Documentation for the Biopython library
+ Documentation and examples about how to use the Biopython
+ library.
+
+Package: python-biopython-sql
+# Todo: add www.biosql.org as "External Ressource" on packages.debian.org when the infrastructure will provide a way to do so.
+Architecture: all
+Depends: ${python:Depends}, ${misc:Depends}, python-mysqldb, python-biopython
+Provides: ${python:Provides}
+Replaces: python2.3-biopython-sql (<< 1.42-1), python2.4-biopython-sql (<< 1.42-1)
+Conflicts: python2.3-biopython-sql (<< 1.42-1), python2.4-biopython-sql (<< 1.42-1)
+XB-Python-Version: ${python:Versions}
+Description: Biopython support for the BioSQL database schema
+ This is the Biopython interface to a BioSQL database (see www.biosql.org
+ for details). BioPerl, BioJava and BioRuby also provide their own BioSQL
+ interfaces onto the same shared SQL schema.
Deleted: trunk/packages/python-biopython/tags/1.58-1/debian/rules
===================================================================
--- trunk/packages/python-biopython/trunk/debian/rules 2011-11-02 19:00:39 UTC (rev 8393)
+++ trunk/packages/python-biopython/tags/1.58-1/debian/rules 2011-11-02 20:27:24 UTC (rev 8395)
@@ -1,90 +0,0 @@
-#!/usr/bin/make -f
-
-include /usr/share/quilt/quilt.make
-
-PWD := $(shell pwd)
-PYDEF := $(shell pyversions -d)
-PYVERS := $(shell pyversions -r)
-
-build: patch build-stamp
-build-stamp: $(PYVERS:%=build-%)
- touch build-stamp
-build-python%:
- echo $(DEB_HOST_ARCH)
- yes | python$* setup.py build
-
-install: $(PYVERS:%=install-%)
-install-python%:
- dh_testdir
- dh_testroot
-
- yes | python$* setup.py install --root $(CURDIR)/debian/python$*-tmp --install-layout=deb
-
- dh_movefiles -ppython-biopython \
- -ppython-biopython-sql \
- --sourcedir=debian/python$*-tmp
-
-clean: unpatch $(PYVERS:%=clean-%)
- dh_testdir
- dh_testroot
-
- dh_clean
-
- $(RM) build-stamp
-
-# fix bugs in setup.py
- $(RM) Tests/*.pyc
- $(RM) Tests/Graphics/*.eps
- $(RM) Tests/Graphics/*.pdf
- $(RM) Tests/dump
- $(RM) Tests/NeuralNetwork/patternio.txt
- $(RM) -r Tests/SCOP/scopseq-test/astral-scopdom-seqres-all-test.fa.idx
-
- $(RM) -r build
-
-clean-python%:
- dh_testdir
- dh_testroot
-
- python$* setup.py clean
-
- $(RM) -r debian/python$*-tmp
-
-binary-indep: build install
- dh_testdir
- dh_testroot
-
- dh_installdocs -i
- dh_installchangelogs -i
- dh_fixperms -i
- dh_compress -i
- dh_pysupport -i
- dh_gencontrol -i
- dh_md5sums -i
- dh_installdeb -i
- dh_builddeb -i
-
-binary-arch: build install
- dh_testdir
- dh_testroot
-
- dh_installdocs -a
- dh_installchangelogs -a
- dh_fixperms -a
- dh_compress -a
-ifeq (,$(findstring nostrip,$(DEB_BUILD_OPTIONS)))
- dh_strip -a
-endif
- dh_pysupport -a
- dh_shlibdeps -a
- dh_gencontrol -a
- dh_md5sums -a
- dh_installdeb -a
- dh_builddeb -a
-
-test:
- python$* setup.py test
-
-binary: binary-indep binary-arch test
-
-.PHONY: clean build install binary binary-indep binary-arch
Copied: trunk/packages/python-biopython/tags/1.58-1/debian/rules (from rev 8394, trunk/packages/python-biopython/trunk/debian/rules)
===================================================================
--- trunk/packages/python-biopython/tags/1.58-1/debian/rules (rev 0)
+++ trunk/packages/python-biopython/tags/1.58-1/debian/rules 2011-11-02 20:27:24 UTC (rev 8395)
@@ -0,0 +1,92 @@
+#!/usr/bin/make -f
+
+include /usr/share/quilt/quilt.make
+
+PWD := $(shell pwd)
+PYDEF := $(shell pyversions -d)
+PYVERS := $(shell pyversions -r)
+
+build: build-arch build-indep
+build-arch: build-stamp
+build-indep: build-stamp
+build-stamp: patch $(PYVERS:%=build-%)
+ touch build-stamp
+build-python%:
+ echo $(DEB_HOST_ARCH)
+ yes | python$* setup.py build
+
+install: $(PYVERS:%=install-%)
+install-python%:
+ dh_testdir
+ dh_testroot
+
+ yes | python$* setup.py install --root $(CURDIR)/debian/python$*-tmp --install-layout=deb
+
+ dh_movefiles -ppython-biopython \
+ -ppython-biopython-sql \
+ --sourcedir=debian/python$*-tmp
+
+clean: unpatch $(PYVERS:%=clean-%)
+ dh_testdir
+ dh_testroot
+
+ dh_clean
+
+ $(RM) build-stamp
+
+# fix bugs in setup.py
+ $(RM) Tests/*.pyc
+ $(RM) Tests/Graphics/*.eps
+ $(RM) Tests/Graphics/*.pdf
+ $(RM) Tests/dump
+ $(RM) Tests/NeuralNetwork/patternio.txt
+ $(RM) -r Tests/SCOP/scopseq-test/astral-scopdom-seqres-all-test.fa.idx
+
+ $(RM) -r build
+
+clean-python%:
+ dh_testdir
+ dh_testroot
+
+ python$* setup.py clean
+
+ $(RM) -r debian/python$*-tmp
+
+binary-indep: build install
+ dh_testdir
+ dh_testroot
+
+ dh_installdocs -i
+ dh_installchangelogs -i
+ dh_fixperms -i
+ dh_compress -i
+ dh_pysupport -i
+ dh_gencontrol -i
+ dh_md5sums -i
+ dh_installdeb -i
+ dh_builddeb -i
+
+binary-arch: build install
+ dh_testdir
+ dh_testroot
+
+ dh_installdocs -a
+ dh_installchangelogs -a
+ dh_fixperms -a
+ dh_compress -a
+ifeq (,$(findstring nostrip,$(DEB_BUILD_OPTIONS)))
+ dh_strip -a
+endif
+ dh_pysupport -a
+ dh_shlibdeps -a
+ dh_gencontrol -a
+ dh_md5sums -a
+ dh_installdeb -a
+ dh_builddeb -a
+
+test:
+ python$* setup.py test
+
+binary: binary-indep binary-arch test
+
+.PHONY: clean build install binary binary-indep binary-arch
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