[med-svn] [SCM] BEDtools branch, meta, updated. meta/2.13.4-1-2-g9f54b26
Charles Plessy
plessy at debian.org
Thu Nov 3 03:25:36 UTC 2011
The following commit has been merged in the meta branch:
commit 9f54b261929b42787a8d28f7bf5a457f100f7120
Author: Charles Plessy <plessy at debian.org>
Date: Thu Nov 3 12:23:27 2011 +0900
Build logs for 2.14.2-1.
diff --git a/amd64.changes b/amd64.changes
index 8b43634..ce34c4e 100644
--- a/amd64.changes
+++ b/amd64.changes
@@ -2,11 +2,11 @@
Hash: SHA256
Format: 1.8
-Date: Thu, 03 Nov 2011 11:14:35 +0900
+Date: Thu, 03 Nov 2011 12:15:32 +0900
Source: bedtools
Binary: bedtools
Architecture: source amd64
-Version: 2.14.1-1
+Version: 2.14.2-1
Distribution: unstable
Urgency: low
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
@@ -14,39 +14,39 @@ Changed-By: Charles Plessy <plessy at debian.org>
Description:
bedtools - suite of utilities for comparing genomic features
Changes:
- bedtools (2.14.1-1) unstable; urgency=low
+ bedtools (2.14.2-1) unstable; urgency=low
.
- [bce732c] New upstream release and new tool, multiBedIntersect.
+ [356313d] Bugfix release.
Checksums-Sha1:
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- 2a49fb48c4a84ceb88fe4b9f973f7b32239d9312 921855 bedtools_2.14.1.orig.tar.gz
- 1f744b6c1d32e2cacea24b067f0561cce09be183 4282 bedtools_2.14.1-1.debian.tar.gz
- 0704612762b96e9d0e1fef6a1312bf8984957d48 672084 bedtools_2.14.1-1_amd64.deb
+ 097fc5899be2e89d150dbc3524083c40e024e315 1967 bedtools_2.14.2-1.dsc
+ ff2a6f15de1e6ebadf7b4571bab3d66ed6405bc3 921999 bedtools_2.14.2.orig.tar.gz
+ 1bc35cb8b2e58f45c294ecf45814c7492fdd1ead 4317 bedtools_2.14.2-1.debian.tar.gz
+ 193e54bb136ea0234d1a0f6479543c33a6f6d67e 671402 bedtools_2.14.2-1_amd64.deb
Checksums-Sha256:
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- 2a8b3199ac5ab24e92d57771363a10b40fb943a11d04d92cf511185c819f28df 921855 bedtools_2.14.1.orig.tar.gz
- 8081aeb790948a33af955dbb9d6bf2fee99b916b15eb94e9503b44f4f4ce1ed2 4282 bedtools_2.14.1-1.debian.tar.gz
- 050e5c57ecb8b5883e7f73baaeba1a094d2e4708839c6098d2176a34b53ddb64 672084 bedtools_2.14.1-1_amd64.deb
+ da5f0c31d5b1717019dced55d4e28356f88de36e5ea0d7417d9ae043737ee44d 1967 bedtools_2.14.2-1.dsc
+ e6fb2f35a51614bd15b479585b421100690232e8987a5afa267cfe84cdee81cd 921999 bedtools_2.14.2.orig.tar.gz
+ 9183aada06617fcfb952259219057978d02cf89fe7eecc9c477748662cff26f5 4317 bedtools_2.14.2-1.debian.tar.gz
+ e8ae29aa6916fb3353fd04b0fd19c3addf228638d442cd6bad64069d9efa4ce7 671402 bedtools_2.14.2-1_amd64.deb
Files:
- 7afe8edce6d4a47d74ea75824246f36b 1967 science optional bedtools_2.14.1-1.dsc
- 0250cd4e2588bfa69be8ed67a703ce17 921855 science optional bedtools_2.14.1.orig.tar.gz
- 3ea8a26995be82395b2b7cfb4cb6952d 4282 science optional bedtools_2.14.1-1.debian.tar.gz
- 493db6f9d2d5a9d55a9c13b551e2a1ea 672084 science optional bedtools_2.14.1-1_amd64.deb
+ 106beb28ab75111ac0f04dc8381e3b62 1967 science optional bedtools_2.14.2-1.dsc
+ 761f9c4027857c03be7f661ef1a6b22e 921999 science optional bedtools_2.14.2.orig.tar.gz
+ a44f90874bc670029759f9ff9196f091 4317 science optional bedtools_2.14.2-1.debian.tar.gz
+ 69ed637ef969f6167c0041f450b263e4 671402 science optional bedtools_2.14.2-1_amd64.deb
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diff --git a/amd64.log b/amd64.log
index 79d471f..0d74dd8 100644
--- a/amd64.log
+++ b/amd64.log
@@ -1,18 +1,18 @@
sbuild (Debian sbuild) 0.62.5 (13 Jul 2011) on aqwa.igloo
╔══════════════════════════════════════════════════════════════════════════════╗
-║ bedtools 2.14.1-1 (amd64) 03 nov. 2011 11:20 ║
+║ bedtools 2.14.2-1 (amd64) 03 nov. 2011 12:16 ║
╚══════════════════════════════════════════════════════════════════════════════╝
Package: bedtools
-Version: 2.14.1-1
-Source Version: 2.14.1-1
+Version: 2.14.2-1
+Source Version: 2.14.2-1
Distribution: unstable
Architecture: amd64
-I: NOTICE: Log filtering will replace 'build/bedtools-z_ThSh/bedtools-2.14.1' with '«PKGBUILDDIR»'
-I: NOTICE: Log filtering will replace 'build/bedtools-z_ThSh' with '«BUILDDIR»'
-I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/sid-amd64-sbuild-3e540590-7d1c-4243-ba3b-53a07e74d07c' with '«CHROOT»'
+I: NOTICE: Log filtering will replace 'build/bedtools-QsgfFg/bedtools-2.14.2' with '«PKGBUILDDIR»'
+I: NOTICE: Log filtering will replace 'build/bedtools-QsgfFg' with '«BUILDDIR»'
+I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/sid-amd64-sbuild-477eea52-6f46-4e46-9b26-94b226dd7f20' with '«CHROOT»'
┌──────────────────────────────────────────────────────────────────────────────┐
│ Update chroot │
@@ -37,14 +37,14 @@ Reading state information...
Local sources
─────────────
-bedtools_2.14.1-1.dsc exists in .; copying to chroot
+bedtools_2.14.2-1.dsc exists in .; copying to chroot
Check arch
──────────
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
-dpkg-deb: building package `sbuild-build-depends-core-dummy' in `/«BUILDDIR»/resolver-5E1xJl/apt_archive/sbuild-build-depends-core-dummy.deb'.
+dpkg-deb: building package `sbuild-build-depends-core-dummy' in `/«BUILDDIR»/resolver-XlI36l/apt_archive/sbuild-build-depends-core-dummy.deb'.
OK
Reading package lists...
@@ -60,7 +60,7 @@ The following NEW packages will be installed:
sbuild-build-depends-core-dummy
debconf: delaying package configuration, since apt-utils is not installed
0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded.
-Need to get 0 B/714 B of archives.
+Need to get 0 B/718 B of archives.
After this operation, 0 B of additional disk space will be used.
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 10741 files and directories currently installed.)
@@ -68,7 +68,7 @@ Unpacking sbuild-build-depends-core-dummy (from .../sbuild-build-depends-core-du
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
Merged Build-Depends: base-files, base-passwd, bash, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, ncurses-base, ncurses-bin, perl-base, sed, login, sysvinit-utils, sysvinit, tar, bsdutils, mount, util-linux, libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), cdbs, debhelper (>= 8), quilt, zlib1g-dev
Filtered Build-Depends: base-files, base-passwd, bash, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, ncurses-base, ncurses-bin, perl-base, sed, login, sysvinit-utils, sysvinit, tar, bsdutils, mount, util-linux, libc6-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), cdbs, debhelper (>= 8), quilt, zlib1g-dev
-dpkg-deb: building package `sbuild-build-depends-bedtools-dummy' in `/«BUILDDIR»/resolver-cn0oaO/apt_archive/sbuild-build-depends-bedtools-dummy.deb'.
+dpkg-deb: building package `sbuild-build-depends-bedtools-dummy' in `/«BUILDDIR»/resolver-KIXilH/apt_archive/sbuild-build-depends-bedtools-dummy.deb'.
OK
Reading package lists...
@@ -187,10 +187,10 @@ Package versions: apt_0.8.15.9 base-files_6.5 base-passwd_3.5.23 bash_4.1-3 binu
Unpack source
─────────────
-dpkg-source: warning: extracting unsigned source package (bedtools_2.14.1-1.dsc)
-dpkg-source: info: extracting bedtools in bedtools-2.14.1
-dpkg-source: info: unpacking bedtools_2.14.1.orig.tar.gz
-dpkg-source: info: unpacking bedtools_2.14.1-1.debian.tar.gz
+dpkg-source: warning: extracting unsigned source package (bedtools_2.14.2-1.dsc)
+dpkg-source: info: extracting bedtools in bedtools-2.14.2
+dpkg-source: info: unpacking bedtools_2.14.2.orig.tar.gz
+dpkg-source: info: unpacking bedtools_2.14.2-1.debian.tar.gz
dpkg-source: info: applying gzstream.h.patch
Check disc space
@@ -208,7 +208,7 @@ SCHROOT_CHROOT_NAME=sid-amd64-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=1000
SCHROOT_GROUP=charles
-SCHROOT_SESSION_ID=sid-amd64-sbuild-3e540590-7d1c-4243-ba3b-53a07e74d07c
+SCHROOT_SESSION_ID=sid-amd64-sbuild-477eea52-6f46-4e46-9b26-94b226dd7f20
SCHROOT_UID=1000
SCHROOT_USER=charles
SHELL=/bin/sh
@@ -220,9 +220,9 @@ dpkg-buildpackage
─────────────────
dpkg-buildpackage: source package bedtools
-dpkg-buildpackage: source version 2.14.1-1
+dpkg-buildpackage: source version 2.14.2-1
dpkg-buildpackage: source changed by Charles Plessy <plessy at debian.org>
- dpkg-source --before-build bedtools-2.14.1
+ dpkg-source --before-build bedtools-2.14.2
dpkg-buildpackage: host architecture amd64
fakeroot debian/rules clean
test -x debian/rules
@@ -246,14 +246,14 @@ Restoring src/utils/gzstream/gzstream.C
No patches applied
rm -rf ./.pc
rm -f debian/stamp-patch*
- dpkg-source -b bedtools-2.14.1
+ dpkg-source -b bedtools-2.14.2
dpkg-source: info: using source format `3.0 (quilt)'
dpkg-source: info: patches are not applied, applying them now
dpkg-source: info: applying gzstream.h.patch
-dpkg-source: info: building bedtools using existing ./bedtools_2.14.1.orig.tar.gz
+dpkg-source: info: building bedtools using existing ./bedtools_2.14.2.orig.tar.gz
dpkg-source: warning: ignoring deletion of file src/utils/bedFile/bedFile.h.orig
-dpkg-source: info: building bedtools in bedtools_2.14.1-1.debian.tar.gz
-dpkg-source: info: building bedtools in bedtools_2.14.1-1.dsc
+dpkg-source: info: building bedtools in bedtools_2.14.2-1.debian.tar.gz
+dpkg-source: info: building bedtools in bedtools_2.14.2-1.dsc
debian/rules build
test -x debian/rules
mkdir -p "."
@@ -569,14 +569,14 @@ dh_shlibdeps -pbedtools
dh_gencontrol -pbedtools
dh_md5sums -pbedtools
dh_builddeb -pbedtools -- -Z xz
-dpkg-deb: building package `bedtools' in `../bedtools_2.14.1-1_amd64.deb'.
- dpkg-genchanges >../bedtools_2.14.1-1_amd64.changes
+dpkg-deb: building package `bedtools' in `../bedtools_2.14.2-1_amd64.deb'.
+ dpkg-genchanges >../bedtools_2.14.2-1_amd64.changes
dpkg-genchanges: including full source code in upload
- dpkg-source --after-build bedtools-2.14.1
+ dpkg-source --after-build bedtools-2.14.2
dpkg-source: info: unapplying gzstream.h.patch
dpkg-buildpackage: full upload (original source is included)
────────────────────────────────────────────────────────────────────────────────
-Build finished at 20111103-1123
+Build finished at 20111103-1219
Finished
────────
@@ -588,15 +588,15 @@ I: Built successfully
└──────────────────────────────────────────────────────────────────────────────┘
-bedtools_2.14.1-1_amd64.changes:
+bedtools_2.14.2-1_amd64.changes:
────────────────────────────────
Format: 1.8
-Date: Thu, 03 Nov 2011 11:14:35 +0900
+Date: Thu, 03 Nov 2011 12:15:32 +0900
Source: bedtools
Binary: bedtools
Architecture: source amd64
-Version: 2.14.1-1
+Version: 2.14.2-1
Distribution: unstable
Urgency: low
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
@@ -604,42 +604,42 @@ Changed-By: Charles Plessy <plessy at debian.org>
Description:
bedtools - suite of utilities for comparing genomic features
Changes:
- bedtools (2.14.1-1) unstable; urgency=low
+ bedtools (2.14.2-1) unstable; urgency=low
.
- [bce732c] New upstream release and new tool, multiBedIntersect.
+ [356313d] Bugfix release.
Checksums-Sha1:
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- 2a49fb48c4a84ceb88fe4b9f973f7b32239d9312 921855 bedtools_2.14.1.orig.tar.gz
- 1f744b6c1d32e2cacea24b067f0561cce09be183 4282 bedtools_2.14.1-1.debian.tar.gz
- 0704612762b96e9d0e1fef6a1312bf8984957d48 672084 bedtools_2.14.1-1_amd64.deb
+ ad36d19bb521f9346237588b9458bb97bb3e865b 1081 bedtools_2.14.2-1.dsc
+ ff2a6f15de1e6ebadf7b4571bab3d66ed6405bc3 921999 bedtools_2.14.2.orig.tar.gz
+ 1bc35cb8b2e58f45c294ecf45814c7492fdd1ead 4317 bedtools_2.14.2-1.debian.tar.gz
+ 193e54bb136ea0234d1a0f6479543c33a6f6d67e 671402 bedtools_2.14.2-1_amd64.deb
Checksums-Sha256:
- b2b11b1ca1973648d8b45261792e38218a3ee19dc318b39d308acfc83caceb96 1081 bedtools_2.14.1-1.dsc
- 2a8b3199ac5ab24e92d57771363a10b40fb943a11d04d92cf511185c819f28df 921855 bedtools_2.14.1.orig.tar.gz
- 8081aeb790948a33af955dbb9d6bf2fee99b916b15eb94e9503b44f4f4ce1ed2 4282 bedtools_2.14.1-1.debian.tar.gz
- 050e5c57ecb8b5883e7f73baaeba1a094d2e4708839c6098d2176a34b53ddb64 672084 bedtools_2.14.1-1_amd64.deb
+ 4a6b04e9f24f250c302299e47c07e3b158d6655e8a96a647ef9b3831ad89c6fc 1081 bedtools_2.14.2-1.dsc
+ e6fb2f35a51614bd15b479585b421100690232e8987a5afa267cfe84cdee81cd 921999 bedtools_2.14.2.orig.tar.gz
+ 9183aada06617fcfb952259219057978d02cf89fe7eecc9c477748662cff26f5 4317 bedtools_2.14.2-1.debian.tar.gz
+ e8ae29aa6916fb3353fd04b0fd19c3addf228638d442cd6bad64069d9efa4ce7 671402 bedtools_2.14.2-1_amd64.deb
Files:
- c42dd1b3c10ed0838ef4cd443de79760 1081 science optional bedtools_2.14.1-1.dsc
- 0250cd4e2588bfa69be8ed67a703ce17 921855 science optional bedtools_2.14.1.orig.tar.gz
- 3ea8a26995be82395b2b7cfb4cb6952d 4282 science optional bedtools_2.14.1-1.debian.tar.gz
- 493db6f9d2d5a9d55a9c13b551e2a1ea 672084 science optional bedtools_2.14.1-1_amd64.deb
+ 7816be43fd7920228b83d645daed8afb 1081 science optional bedtools_2.14.2-1.dsc
+ 761f9c4027857c03be7f661ef1a6b22e 921999 science optional bedtools_2.14.2.orig.tar.gz
+ a44f90874bc670029759f9ff9196f091 4317 science optional bedtools_2.14.2-1.debian.tar.gz
+ 69ed637ef969f6167c0041f450b263e4 671402 science optional bedtools_2.14.2-1_amd64.deb
┌──────────────────────────────────────────────────────────────────────────────┐
│ Package contents │
└──────────────────────────────────────────────────────────────────────────────┘
-bedtools_2.14.1-1_amd64.deb
+bedtools_2.14.2-1_amd64.deb
───────────────────────────
new debian package, version 2.0.
- size 672084 bytes: control archive= 1731 bytes.
+ size 671402 bytes: control archive= 1734 bytes.
865 bytes, 19 lines control
2025 bytes, 35 lines md5sums
Package: bedtools
- Version: 2.14.1-1
+ Version: 2.14.2-1
Architecture: amd64
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
- Installed-Size: 4695
+ Installed-Size: 4696
Pre-Depends: dpkg (>= 1.15.6)
Depends: libc6 (>= 2.4), libgcc1 (>= 1:4.1.1), libstdc++6 (>= 4.4.0), zlib1g (>= 1:1.1.4)
Suggests: filo
@@ -655,49 +655,49 @@ bedtools_2.14.1-1_amd64.deb
.
The groupBy utility is distribued in the filo package.
-drwxr-xr-x root/root 0 2011-11-03 11:22 ./
-drwxr-xr-x root/root 0 2011-11-03 11:22 ./usr/
-drwxr-xr-x root/root 0 2011-11-03 11:22 ./usr/share/
-drwxr-xr-x root/root 0 2011-11-03 11:22 ./usr/share/bedtools/
-drwxr-xr-x root/root 0 2011-11-03 11:20 ./usr/share/bedtools/genomes/
--rwxr-xr-x root/root 585 2011-11-03 06:45 ./usr/share/bedtools/genomes/mouse.mm9.genome
--rwxr-xr-x root/root 856 2011-11-03 06:45 ./usr/share/bedtools/genomes/human.hg18.genome
--rwxr-xr-x root/root 1972 2011-11-03 06:45 ./usr/share/bedtools/genomes/human.hg19.genome
--rwxr-xr-x root/root 565 2011-11-03 06:45 ./usr/share/bedtools/genomes/mouse.mm8.genome
-drwxr-xr-x root/root 0 2011-11-03 11:22 ./usr/share/doc/
-drwxr-xr-x root/root 0 2011-11-03 11:22 ./usr/share/doc/bedtools/
--rw-r--r-- root/root 1442 2011-11-03 06:45 ./usr/share/doc/bedtools/README.rst
--rw-r--r-- root/root 4611 2011-11-03 11:11 ./usr/share/doc/bedtools/copyright
--rw-r--r-- root/root 11515 2011-11-03 06:45 ./usr/share/doc/bedtools/changelog.gz
--rw-r--r-- root/root 634 2011-11-03 11:15 ./usr/share/doc/bedtools/changelog.Debian.gz
-drwxr-xr-x root/root 0 2011-11-03 11:22 ./usr/bin/
--rwxr-xr-x root/root 147112 2011-11-03 11:22 ./usr/bin/fastaFromBed
--rwxr-xr-x root/root 180000 2011-11-03 11:22 ./usr/bin/pairToPair
--rwxr-xr-x root/root 276496 2011-11-03 11:22 ./usr/bin/coverageBed
--rwxr-xr-x root/root 229232 2011-11-03 11:22 ./usr/bin/bedToBam
--rwxr-xr-x root/root 93664 2011-11-03 11:22 ./usr/bin/overlap
--rwxr-xr-x root/root 110184 2011-11-03 11:22 ./usr/bin/linksBed
--rwxr-xr-x root/root 114112 2011-11-03 11:22 ./usr/bin/mergeBed
--rwxr-xr-x root/root 114168 2011-11-03 11:22 ./usr/bin/complementBed
--rwxr-xr-x root/root 147136 2011-11-03 11:22 ./usr/bin/nucBed
--rwxr-xr-x root/root 118856 2011-11-03 11:22 ./usr/bin/flankBed
--rwxr-xr-x root/root 267728 2011-11-03 11:22 ./usr/bin/tagBam
--rwxr-xr-x root/root 345576 2011-11-03 11:22 ./usr/bin/intersectBed
--rwxr-xr-x root/root 118328 2011-11-03 11:22 ./usr/bin/maskFastaFromBed
--rwxr-xr-x root/root 110136 2011-11-03 11:22 ./usr/bin/slopBed
--rwxr-xr-x root/root 110000 2011-11-03 11:22 ./usr/bin/annotateBed
--rwxr-xr-x root/root 118192 2011-11-03 11:22 ./usr/bin/subtractBed
--rwxr-xr-x root/root 135320 2011-11-03 11:22 ./usr/bin/shuffleBed
--rwxr-xr-x root/root 278856 2011-11-03 11:22 ./usr/bin/windowBed
--rwxr-xr-x root/root 150952 2011-11-03 11:22 ./usr/bin/sortBed
--rwxr-xr-x root/root 101856 2011-11-03 11:22 ./usr/bin/bed12ToBed6
--rwxr-xr-x root/root 126592 2011-11-03 11:22 ./usr/bin/closestBed
--rwxr-xr-x root/root 218312 2011-11-03 11:22 ./usr/bin/bamToBed
--rwxr-xr-x root/root 356352 2011-11-03 11:22 ./usr/bin/pairToBed
--rwxr-xr-x root/root 294888 2011-11-03 11:22 ./usr/bin/genomeCoverageBed
--rwxr-xr-x root/root 65032 2011-11-03 11:22 ./usr/bin/unionBedGraphs
--rwxr-xr-x root/root 126480 2011-11-03 11:22 ./usr/bin/bedToIgv
--rwxr-xr-x root/root 292848 2011-11-03 11:22 ./usr/bin/multiBamCov
+drwxr-xr-x root/root 0 2011-11-03 12:19 ./
+drwxr-xr-x root/root 0 2011-11-03 12:19 ./usr/
+drwxr-xr-x root/root 0 2011-11-03 12:19 ./usr/share/
+drwxr-xr-x root/root 0 2011-11-03 12:19 ./usr/share/bedtools/
+drwxr-xr-x root/root 0 2011-11-03 12:17 ./usr/share/bedtools/genomes/
+-rwxr-xr-x root/root 585 2011-11-03 08:56 ./usr/share/bedtools/genomes/mouse.mm9.genome
+-rwxr-xr-x root/root 856 2011-11-03 08:56 ./usr/share/bedtools/genomes/human.hg18.genome
+-rwxr-xr-x root/root 1972 2011-11-03 08:56 ./usr/share/bedtools/genomes/human.hg19.genome
+-rwxr-xr-x root/root 565 2011-11-03 08:56 ./usr/share/bedtools/genomes/mouse.mm8.genome
+drwxr-xr-x root/root 0 2011-11-03 12:19 ./usr/share/doc/
+drwxr-xr-x root/root 0 2011-11-03 12:19 ./usr/share/doc/bedtools/
+-rw-r--r-- root/root 1442 2011-11-03 08:56 ./usr/share/doc/bedtools/README.rst
+-rw-r--r-- root/root 4611 2011-11-03 12:15 ./usr/share/doc/bedtools/copyright
+-rw-r--r-- root/root 11638 2011-11-03 08:56 ./usr/share/doc/bedtools/changelog.gz
+-rw-r--r-- root/root 661 2011-11-03 12:15 ./usr/share/doc/bedtools/changelog.Debian.gz
+drwxr-xr-x root/root 0 2011-11-03 12:19 ./usr/bin/
+-rwxr-xr-x root/root 147112 2011-11-03 12:19 ./usr/bin/fastaFromBed
+-rwxr-xr-x root/root 180032 2011-11-03 12:19 ./usr/bin/pairToPair
+-rwxr-xr-x root/root 276528 2011-11-03 12:19 ./usr/bin/coverageBed
+-rwxr-xr-x root/root 229232 2011-11-03 12:19 ./usr/bin/bedToBam
+-rwxr-xr-x root/root 93664 2011-11-03 12:19 ./usr/bin/overlap
+-rwxr-xr-x root/root 110216 2011-11-03 12:19 ./usr/bin/linksBed
+-rwxr-xr-x root/root 114112 2011-11-03 12:19 ./usr/bin/mergeBed
+-rwxr-xr-x root/root 114168 2011-11-03 12:19 ./usr/bin/complementBed
+-rwxr-xr-x root/root 147136 2011-11-03 12:19 ./usr/bin/nucBed
+-rwxr-xr-x root/root 118888 2011-11-03 12:19 ./usr/bin/flankBed
+-rwxr-xr-x root/root 267760 2011-11-03 12:19 ./usr/bin/tagBam
+-rwxr-xr-x root/root 345608 2011-11-03 12:19 ./usr/bin/intersectBed
+-rwxr-xr-x root/root 118328 2011-11-03 12:19 ./usr/bin/maskFastaFromBed
+-rwxr-xr-x root/root 110168 2011-11-03 12:19 ./usr/bin/slopBed
+-rwxr-xr-x root/root 110000 2011-11-03 12:19 ./usr/bin/annotateBed
+-rwxr-xr-x root/root 118192 2011-11-03 12:19 ./usr/bin/subtractBed
+-rwxr-xr-x root/root 135352 2011-11-03 12:19 ./usr/bin/shuffleBed
+-rwxr-xr-x root/root 278888 2011-11-03 12:19 ./usr/bin/windowBed
+-rwxr-xr-x root/root 150952 2011-11-03 12:19 ./usr/bin/sortBed
+-rwxr-xr-x root/root 101856 2011-11-03 12:19 ./usr/bin/bed12ToBed6
+-rwxr-xr-x root/root 126624 2011-11-03 12:19 ./usr/bin/closestBed
+-rwxr-xr-x root/root 218312 2011-11-03 12:19 ./usr/bin/bamToBed
+-rwxr-xr-x root/root 356352 2011-11-03 12:19 ./usr/bin/pairToBed
+-rwxr-xr-x root/root 294888 2011-11-03 12:19 ./usr/bin/genomeCoverageBed
+-rwxr-xr-x root/root 65032 2011-11-03 12:19 ./usr/bin/unionBedGraphs
+-rwxr-xr-x root/root 126480 2011-11-03 12:19 ./usr/bin/bedToIgv
+-rwxr-xr-x root/root 292880 2011-11-03 12:19 ./usr/bin/multiBamCov
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -822,18 +822,18 @@ Removing zlib1g-dev ...
└──────────────────────────────────────────────────────────────────────────────┘
Architecture: amd64
-Build-Space: 137012
-Build-Time: 156
+Build-Space: 137016
+Build-Time: 149
Distribution: unstable
-Install-Time: 11
-Job: bedtools_2.14.1-1.dsc
+Install-Time: 12
+Job: bedtools_2.14.2-1.dsc
Lintian: pass
Package: bedtools
-Package-Time: 172
-Source-Version: 2.14.1-1
-Space: 137012
+Package-Time: 167
+Source-Version: 2.14.2-1
+Space: 137016
Status: successful
-Version: 2.14.1-1
+Version: 2.14.2-1
────────────────────────────────────────────────────────────────────────────────
-Finished at 20111103-1123
-Build needed 00:02:52, 137012k disc space
+Finished at 20111103-1219
+Build needed 00:02:47, 137016k disc space
diff --git a/dsc b/dsc
index 83c5d2d..4f613ab 100644
--- a/dsc
+++ b/dsc
@@ -5,7 +5,7 @@ Format: 3.0 (quilt)
Source: bedtools
Binary: bedtools
Architecture: any
-Version: 2.14.1-1
+Version: 2.14.2-1
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
Uploaders: Charles Plessy <plessy at debian.org>
Dm-Upload-Allowed: yes
@@ -17,29 +17,29 @@ Build-Depends: cdbs, debhelper (>= 8), quilt, zlib1g-dev
Package-List:
bedtools deb science optional
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- 1f744b6c1d32e2cacea24b067f0561cce09be183 4282 bedtools_2.14.1-1.debian.tar.gz
+ ff2a6f15de1e6ebadf7b4571bab3d66ed6405bc3 921999 bedtools_2.14.2.orig.tar.gz
+ 1bc35cb8b2e58f45c294ecf45814c7492fdd1ead 4317 bedtools_2.14.2-1.debian.tar.gz
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+ 9183aada06617fcfb952259219057978d02cf89fe7eecc9c477748662cff26f5 4317 bedtools_2.14.2-1.debian.tar.gz
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- 3ea8a26995be82395b2b7cfb4cb6952d 4282 bedtools_2.14.1-1.debian.tar.gz
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--
Suite of utilities for comparing genomic features.
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