[med-svn] [SCM] r-bioc-biobase branch, meta, updated. meta/2.12.2-1-2-g1a5fbf7
Charles Plessy
plessy at debian.org
Fri Nov 4 04:18:26 UTC 2011
The following commit has been merged in the meta branch:
commit 1a5fbf7885e6be3a7f19105a4fddaaece9ce8e90
Author: Charles Plessy <plessy at debian.org>
Date: Fri Nov 4 13:17:20 2011 +0900
Collected logs for 2.14.0-1.
diff --git a/armel.log b/armel.log
index a994660..a5aff7f 100644
--- a/armel.log
+++ b/armel.log
@@ -1,4 +1,4 @@
-From buildd at arnold.debian.org Thu Aug 04 00:34:29 2011
+From buildd at arnold.debian.org Wed Nov 02 06:07:42 2011
Return-path: <buildd at arnold.debian.org>
Received: from kokkonen.debian.org ([2001:41b8:202:deb:1a1a:0:52c3:4b61])
from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
@@ -6,63 +6,63 @@ Received: from kokkonen.debian.org ([2001:41b8:202:deb:1a1a:0:52c3:4b61])
EMAIL=hostmaster at kokkonen.debian.org (verified)
by grieg.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
(Exim 4.72) (envelope-from <buildd at arnold.debian.org>)
- id 1QoltN-0005Mn-NG
- for logs at buildd.debian.org; Thu, 04 Aug 2011 00:34:29 +0000
+ id 1RLTzC-00085s-AZ
+ for logs at buildd.debian.org; Wed, 02 Nov 2011 06:07:42 +0000
Received: from arnold.islands.arm.com ([217.140.96.57] helo=arnold.debian.org)
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CN=arnold.debian.org, EMAIL=hostmaster at arnold.debian.org (verified)
by kokkonen.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
(Exim 4.72) (envelope-from <buildd at arnold.debian.org>)
- id 1QoltM-0004Qt-Rq
- for logs at buildd.debian.org; Thu, 04 Aug 2011 00:34:29 +0000
-Received: from buildd by arnold.debian.org with local (Exim 4.69)
+ id 1RLTzB-0004oR-1J
+ for logs at buildd.debian.org; Wed, 02 Nov 2011 06:07:41 +0000
+Received: from buildd by arnold.debian.org with local (Exim 4.72)
(envelope-from <buildd at arnold.debian.org>)
- id 1QoltL-0000vk-6U; Thu, 04 Aug 2011 00:34:27 +0000
+ id 1RLTz9-0004ih-RM; Wed, 02 Nov 2011 06:07:39 +0000
+Date: Wed, 02 Nov 2011 06:07:39 +0000
+Message-Id: <E1RLTz9-0004ih-RM at arnold.debian.org>
From: buildd on arnold <buildd at arnold.debian.org>
To: buildd-porters at arnold.debian.org,logs at buildd.debian.org
-Subject: Log for successful build of r-bioc-biobase_2.12.2-1 on armel
+Subject: Log for successful build of r-bioc-biobase_2.14.0-1 on armel
(dist=sid)
Content-Type: text/plain; charset=UTF-8
Content-Transfer-Encoding: 8bit
-Message-Id: <E1QoltL-0000vk-6U at arnold.debian.org>
-Date: Thu, 04 Aug 2011 00:34:27 +0000
Delivered-To: logs at buildd.debian.org
sbuild (Debian sbuild) 0.61.0 (23 Feb 2011) on arnold.debian.org
╔══════════════════════════════════════════════════════════════════════════════╗
-║ r-bioc-biobase 2.12.2-1 (armel) 04 Aug 2011 00:25 ║
+║ r-bioc-biobase 2.14.0-1 (armel) 02 Nov 2011 05:58 ║
╚══════════════════════════════════════════════════════════════════════════════╝
Package: r-bioc-biobase
-Version: 2.12.2-1
-Source Version: 2.12.2-1
+Version: 2.14.0-1
+Source Version: 2.14.0-1
Architecture: armel
-Get:1 http://ftp.uk.debian.org unstable InRelease [146 kB]
-Get:2 http://incoming.debian.org unstable InRelease [146 kB]
-Get:3 http://ftp.uk.debian.org unstable/main Sources [5403 kB]
+Get:1 http://incoming.debian.org unstable InRelease [146 kB]
+Get:2 http://ftp.uk.debian.org unstable InRelease [146 kB]
+Get:3 http://ftp.uk.debian.org unstable/main Sources [5884 kB]
Ign http://incoming.debian.org InRelease
Get:4 http://incoming.debian.org Release.gpg [836 B]
-Get:5 http://incoming.debian.org unstable/main Sources [5403 kB]
-Get:6 http://incoming.debian.org unstable/contrib Sources [51.3 kB]
-Get:7 http://incoming.debian.org unstable/non-free Sources [96.3 kB]
-Get:8 http://incoming.debian.org unstable/main armel Packages [7395 kB]
-Get:9 http://ftp.uk.debian.org unstable/contrib Sources [51.3 kB]
-Get:10 http://ftp.uk.debian.org unstable/non-free Sources [96.3 kB]
-Get:11 http://ftp.uk.debian.org unstable/main armel Packages [7395 kB]
-Get:12 http://incoming.debian.org unstable/contrib armel Packages [53.1 kB]
-Ign http://incoming.debian.org unstable/contrib TranslationIndex
-Get:13 http://incoming.debian.org unstable/main TranslationIndex [2045 B]
-Get:14 http://incoming.debian.org Release [1604 B]
-Get:15 http://incoming.debian.org Sources [30.7 kB]
-Get:16 http://incoming.debian.org Packages [218 kB]
-Ign http://incoming.debian.org unstable/contrib Translation-en
-Ign http://incoming.debian.org Translation-en
-Get:17 http://ftp.uk.debian.org unstable/contrib armel Packages [53.1 kB]
+Get:5 http://incoming.debian.org Release [1604 B]
+Get:6 http://incoming.debian.org unstable/main Sources [5884 kB]
+Get:7 http://ftp.uk.debian.org unstable/contrib Sources [56.9 kB]
+Get:8 http://ftp.uk.debian.org unstable/non-free Sources [104 kB]
+Get:9 http://ftp.uk.debian.org unstable/main armel Packages [7652 kB]
+Get:10 http://ftp.uk.debian.org unstable/contrib armel Packages [55.2 kB]
Ign http://ftp.uk.debian.org unstable/contrib TranslationIndex
-Get:18 http://ftp.uk.debian.org unstable/main TranslationIndex [2045 B]
+Get:11 http://ftp.uk.debian.org unstable/main TranslationIndex [2045 B]
Ign http://ftp.uk.debian.org unstable/contrib Translation-en
-Fetched 26.5 MB in 1min 2s (426 kB/s)
+Get:12 http://incoming.debian.org unstable/contrib Sources [56.9 kB]
+Get:13 http://incoming.debian.org unstable/non-free Sources [104 kB]
+Get:14 http://incoming.debian.org unstable/main armel Packages [7652 kB]
+Get:15 http://incoming.debian.org unstable/contrib armel Packages [55.2 kB]
+Ign http://incoming.debian.org unstable/contrib TranslationIndex
+Get:16 http://incoming.debian.org unstable/main TranslationIndex [2045 B]
+Get:17 http://incoming.debian.org Sources [49.2 kB]
+Get:18 http://incoming.debian.org Packages [352 kB]
+Ign http://incoming.debian.org Translation-en
+Ign http://incoming.debian.org unstable/contrib Translation-en
+Fetched 28.2 MB in 1min 2s (453 kB/s)
Reading package lists...
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -83,11 +83,11 @@ Building dependency tree...
Reading state information...
NOTICE: 'r-bioc-biobase' packaging is maintained in the 'Git' version control system at:
git://git.debian.org/git/debian-med/r-bioc-biobase.git
-Need to get 2229 kB of source archives.
-Get:1 http://incoming.debian.org/buildd-unstable/ r-bioc-biobase 2.12.2-1 (dsc) [1944 B]
-Get:2 http://incoming.debian.org/buildd-unstable/ r-bioc-biobase 2.12.2-1 (tar) [2222 kB]
-Get:3 http://incoming.debian.org/buildd-unstable/ r-bioc-biobase 2.12.2-1 (diff) [5417 B]
-Fetched 2229 kB in 2s (1003 kB/s)
+Need to get 1934 kB of source archives.
+Get:1 http://incoming.debian.org/buildd-unstable/ r-bioc-biobase 2.14.0-1 (dsc) [2004 B]
+Get:2 http://incoming.debian.org/buildd-unstable/ r-bioc-biobase 2.14.0-1 (tar) [1926 kB]
+Get:3 http://incoming.debian.org/buildd-unstable/ r-bioc-biobase 2.14.0-1 (diff) [5645 B]
+Fetched 1934 kB in 1s (1444 kB/s)
Download complete and in download only mode
Check arch
@@ -101,85 +101,85 @@ Check arch
Build-Depends: build-essential, fakeroot
Checking for already installed dependencies...
build-essential: already installed (11.5)
-fakeroot: already installed (1.16-1)
+fakeroot: already installed (1.18.1-1)
Checking for dependency conflicts...
Installing positive dependencies:
Reading package lists...
Building dependency tree...
Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 56 not upgraded.
+0 upgraded, 0 newly installed, 0 to remove and 15 not upgraded.
Removing negative dependencies:
Reading package lists...
Building dependency tree...
Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 56 not upgraded.
+0 upgraded, 0 newly installed, 0 to remove and 15 not upgraded.
Checking correctness of dependencies...
┌──────────────────────────────────────────────────────────────────────────────┐
│ Install r-bioc-biobase build dependencies (internal resolver) │
└──────────────────────────────────────────────────────────────────────────────┘
-Build-Depends: base-files, base-passwd, bash, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, ncurses-base, ncurses-bin, perl-base, sed, login, sysvinit-utils, sysvinit, tar, bsdutils, mount, util-linux, libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), cdbs, debhelper (>= 8), r-base-dev
+Build-Depends: base-files, base-passwd, bash, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, ncurses-base, ncurses-bin, perl-base, sed, login, sysvinit-utils, sysvinit, tar, bsdutils, mount, util-linux, libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), cdbs, debhelper (>= 8), r-base-dev (>= 2.10)
Checking for already installed dependencies...
-base-files: already installed (6.4)
-base-passwd: already installed (3.5.22)
+base-files: already installed (6.5)
+base-passwd: already installed (3.5.23)
bash: already installed (4.1-3)
-coreutils: already installed (8.5-1)
-dash: already installed (0.5.5.1-7.4)
-debianutils: already installed (4.0.2)
-diffutils: already installed (1:3.0-1)
-dpkg: already installed (1.16.0.3)
-e2fsprogs: already installed (1.41.12-4)
+coreutils: already installed (8.13-3)
+dash: already installed (0.5.7-2)
+debianutils: already installed (4.0.4)
+diffutils: already installed (1:3.2-1)
+dpkg: already installed (1.16.1.1)
+e2fsprogs: already installed (1.42~WIP-2011-10-16-1)
findutils: already installed (4.4.2-1+b1)
-grep: already installed (2.8-2)
-gzip: already installed (1.3.12-9)
+grep: already installed (2.9-2)
+gzip: already installed (1.4-1)
hostname: already installed (3.06)
-ncurses-base: already installed (5.9-1)
-ncurses-bin: already installed (5.9-1)
-perl-base: already installed (5.12.3-7+b1)
+ncurses-base: already installed (5.9-2)
+ncurses-bin: already installed (5.9-2)
+perl-base: already installed (5.12.4-6)
sed: already installed (4.2.1-9)
login: already installed (1:4.1.4.2+svn3283-3)
-sysvinit-utils: already installed (2.88dsf-13.10)
-sysvinit: already installed (2.88dsf-13.10)
-tar: already installed (1.25-3)
-bsdutils: already installed (1:2.17.2-9.1)
-mount: already installed (2.17.2-9.1)
-util-linux: already installed (2.17.2-9.1)
-libc6-dev: already installed (2.13-5)
-gcc: already installed (4:4.6.0-5 >= 4:4.4.3 is satisfied)
-g++: already installed (4:4.6.0-5 >= 4:4.4.3 is satisfied)
+sysvinit-utils: already installed (2.88dsf-13.12)
+sysvinit: already installed (2.88dsf-13.12)
+tar: already installed (1.26-2)
+bsdutils: already installed (1:2.19.1-5)
+mount: already installed (2.19.1-5)
+util-linux: already installed (2.19.1-5)
+libc6-dev: already installed (2.13-21)
+gcc: already installed (4:4.6.1-3 >= 4:4.4.3 is satisfied)
+g++: already installed (4:4.6.1-3 >= 4:4.4.3 is satisfied)
make: already installed (3.81-8.1)
-dpkg-dev: already installed (1.16.0.3 >= 1.13.5 is satisfied)
+dpkg-dev: already installed (1.16.1.1 >= 1.13.5 is satisfied)
cdbs: missing
debhelper: missing
-Using default version 8.9.3
+Using default version 8.9.8
r-base-dev: missing
+Using default version 2.14.0-1
Checking for dependency conflicts...
Installing positive dependencies: cdbs debhelper r-base-dev
Reading package lists...
Building dependency tree...
Reading state information...
The following extra packages will be installed:
- bsdmainutils cpp cpp-4.6 dpatch file fontconfig fontconfig-config g++-4.6
- gcc gcc-4.6 gcc-4.6-base gettext gettext-base gfortran gfortran-4.6
- groff-base html2text intltool-debian libblas-dev libblas3gf libbz2-dev
- libcairo2 libcroco3 libdatrie1 libexpat1 libfontconfig1 libfreetype6 libgcc1
- libgfortran3 libglib2.0-0 libgomp1 libice6 libjpeg62 libjpeg8 libjpeg8-dev
+ bsdmainutils cpp-4.6 dpatch file fontconfig fontconfig-config g++-4.6
+ gcc-4.6 gcc-4.6-base gettext gettext-base gfortran gfortran-4.6 groff-base
+ html2text intltool-debian libblas-dev libblas3gf libbz2-dev libcairo2
+ libcroco3 libdatrie1 libexpat1 libfontconfig1 libfreetype6 libgcc1
+ libgfortran3 libglib2.0-0 libgomp1 libice6 libjpeg8 libjpeg8-dev
liblapack-dev liblapack3gf libmagic1 libncurses5-dev libpango1.0-0
libpaper-utils libpaper1 libpcre3 libpcre3-dev libpcrecpp0 libpipeline1
libpixman-1-0 libpng12-0 libpng12-dev libreadline-dev libreadline6-dev
libsm6 libstdc++6 libstdc++6-4.6-dev libthai-data libthai0 libtiff4
- libunistring0 libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0
- libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxrender1 libxss1 libxt6 man-db
- po-debconf r-base-core tcl8.5 tk8.5 ttf-dejavu-core ucf unzip x11-common
- xdg-utils zip zlib1g-dev
+ libtinfo-dev libunistring0 libx11-6 libx11-data libxau6 libxcb-render0
+ libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxrender1 libxss1
+ libxt6 man-db po-debconf r-base-core tcl8.5 tk8.5 ttf-dejavu-core ucf unzip
+ x11-common xdg-utils zip zlib1g-dev
Suggested packages:
- wamerican wordlist whois vacation devscripts cpp-doc gcc-4.6-locales dh-make
- curl defoma gcc-4.6-doc libstdc++6-4.6-dbg gcc-multilib manpages-dev
- autoconf automake1.9 libtool flex bison gdb gcc-doc libmudflap0-4.6-dev
- libgcc1-dbg libgomp1-dbg libquadmath-dbg libmudflap0-dbg binutils-gold
- gettext-doc gfortran-doc gfortran-4.6-doc libgfortran3-dbg groff ncurses-doc
- ttf-baekmuk ttf-arphic-gbsn00lp ttf-arphic-bsmi00lp ttf-arphic-gkai00mp
+ wamerican wordlist whois vacation devscripts gcc-4.6-locales dh-make curl
+ defoma gcc-4.6-doc libstdc++6-4.6-dbg libmudflap0-4.6-dev libgcc1-dbg
+ libgomp1-dbg libquadmath-dbg libmudflap0-dbg binutils-gold gettext-doc
+ gfortran-doc gfortran-4.6-doc libgfortran3-dbg groff ncurses-doc ttf-baekmuk
+ ttf-arphic-gbsn00lp ttf-arphic-bsmi00lp ttf-arphic-gkai00mp
ttf-arphic-bkai00mp libstdc++6-4.6-doc less www-browser libmail-box-perl
r-doc-info r-doc-pdf r-mathlib r-base-html tclreadline gvfs-bin
Recommended packages:
@@ -190,329 +190,329 @@ The following NEW packages will be installed:
bsdmainutils cdbs debhelper dpatch file fontconfig fontconfig-config gettext
gettext-base gfortran gfortran-4.6 groff-base html2text intltool-debian
libblas-dev libblas3gf libbz2-dev libcairo2 libcroco3 libdatrie1 libexpat1
- libfontconfig1 libfreetype6 libgfortran3 libglib2.0-0 libice6 libjpeg62
- libjpeg8 libjpeg8-dev liblapack-dev liblapack3gf libmagic1 libncurses5-dev
+ libfontconfig1 libfreetype6 libgfortran3 libglib2.0-0 libice6 libjpeg8
+ libjpeg8-dev liblapack-dev liblapack3gf libmagic1 libncurses5-dev
libpango1.0-0 libpaper-utils libpaper1 libpcre3 libpcre3-dev libpcrecpp0
libpipeline1 libpixman-1-0 libpng12-0 libpng12-dev libreadline-dev
- libreadline6-dev libsm6 libthai-data libthai0 libtiff4 libunistring0
- libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6
- libxext6 libxft2 libxml2 libxrender1 libxss1 libxt6 man-db po-debconf
- r-base-core r-base-dev tcl8.5 tk8.5 ttf-dejavu-core ucf unzip x11-common
- xdg-utils zip zlib1g-dev
+ libreadline6-dev libsm6 libthai-data libthai0 libtiff4 libtinfo-dev
+ libunistring0 libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0
+ libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxrender1 libxss1 libxt6 man-db
+ po-debconf r-base-core r-base-dev tcl8.5 tk8.5 ttf-dejavu-core ucf unzip
+ x11-common xdg-utils zip zlib1g-dev
The following packages will be upgraded:
- cpp cpp-4.6 g++-4.6 gcc gcc-4.6 gcc-4.6-base libgcc1 libgomp1 libstdc++6
+ cpp-4.6 g++-4.6 gcc-4.6 gcc-4.6-base libgcc1 libgomp1 libstdc++6
libstdc++6-4.6-dev
-10 upgraded, 76 newly installed, 0 to remove and 46 not upgraded.
-Need to get 63.0 MB of archives.
-After this operation, 122 MB of additional disk space will be used.
-Get:1 http://ftp.uk.debian.org/debian/ unstable/main libgomp1 armel 4.6.1-4 [28.4 kB]
-Get:2 http://ftp.uk.debian.org/debian/ unstable/main gcc-4.6-base armel 4.6.1-4 [133 kB]
-Get:3 http://ftp.uk.debian.org/debian/ unstable/main libgcc1 armel 1:4.6.1-4 [24.7 kB]
-Get:4 http://ftp.uk.debian.org/debian/ unstable/main cpp-4.6 armel 4.6.1-4 [4303 kB]
-Get:5 http://ftp.uk.debian.org/debian/ unstable/main libstdc++6-4.6-dev armel 4.6.1-4 [1705 kB]
-Get:6 http://ftp.uk.debian.org/debian/ unstable/main g++-4.6 armel 4.6.1-4 [5204 kB]
-Get:7 http://ftp.uk.debian.org/debian/ unstable/main gcc-4.6 armel 4.6.1-4 [4561 kB]
-Get:8 http://ftp.uk.debian.org/debian/ unstable/main libstdc++6 armel 4.6.1-4 [296 kB]
-Get:9 http://ftp.uk.debian.org/debian/ unstable/main libpipeline1 armel 1.2.0-3 [33.8 kB]
-Get:10 http://ftp.uk.debian.org/debian/ unstable/main libdatrie1 armel 0.2.4-3 [25.4 kB]
-Get:11 http://ftp.uk.debian.org/debian/ unstable/main libexpat1 armel 2.0.1-7 [118 kB]
-Get:12 http://ftp.uk.debian.org/debian/ unstable/main libfreetype6 armel 2.4.4-2 [368 kB]
-Get:13 http://ftp.uk.debian.org/debian/ unstable/main ucf all 3.0025+nmu2 [70.6 kB]
-Get:14 http://ftp.uk.debian.org/debian/ unstable/main ttf-dejavu-core all 2.33-1 [1550 kB]
-Get:15 http://ftp.uk.debian.org/debian/ unstable/main fontconfig-config all 2.8.0-3 [221 kB]
-Get:16 http://ftp.uk.debian.org/debian/ unstable/main libfontconfig1 armel 2.8.0-3 [270 kB]
-Get:17 http://ftp.uk.debian.org/debian/ unstable/main libgfortran3 armel 4.6.1-4 [255 kB]
-Get:18 http://ftp.uk.debian.org/debian/ unstable/main x11-common all 1:7.6+7 [275 kB]
-Get:19 http://ftp.uk.debian.org/debian/ unstable/main libice6 armel 2:1.0.7-2 [50.1 kB]
-Get:20 http://ftp.uk.debian.org/debian/ unstable/main libpixman-1-0 armel 0.22.2-1 [372 kB]
-Get:21 http://ftp.uk.debian.org/debian/ unstable/main libpng12-0 armel 1.2.46-3 [181 kB]
-Get:22 http://ftp.uk.debian.org/debian/ unstable/main libxau6 armel 1:1.0.6-3 [16.0 kB]
-Get:23 http://ftp.uk.debian.org/debian/ unstable/main libxdmcp6 armel 1:1.1.0-3 [21.5 kB]
-Get:24 http://ftp.uk.debian.org/debian/ unstable/main libxcb1 armel 1.7-3 [39.5 kB]
-Get:25 http://ftp.uk.debian.org/debian/ unstable/main libx11-data all 2:1.4.4-1 [183 kB]
-Get:26 http://ftp.uk.debian.org/debian/ unstable/main libx11-6 armel 2:1.4.4-1 [832 kB]
-Get:27 http://ftp.uk.debian.org/debian/ unstable/main libxcb-render0 armel 1.7-3 [14.8 kB]
-Get:28 http://ftp.uk.debian.org/debian/ unstable/main libxcb-shm0 armel 1.7-3 [9178 B]
-Get:29 http://ftp.uk.debian.org/debian/ unstable/main libxrender1 armel 1:0.9.6-2 [30.4 kB]
-Get:30 http://ftp.uk.debian.org/debian/ unstable/main libcairo2 armel 1.10.2-6.1 [908 kB]
-Get:31 http://ftp.uk.debian.org/debian/ unstable/main libpcre3 armel 8.12-3 [258 kB]
-Get:32 http://ftp.uk.debian.org/debian/ unstable/main libglib2.0-0 armel 2.28.6-1 [1535 kB]
-Get:33 http://ftp.uk.debian.org/debian/ unstable/main libthai-data all 0.1.15-2 [201 kB]
-Get:34 http://ftp.uk.debian.org/debian/ unstable/main libthai0 armel 0.1.15-2 [40.4 kB]
-Get:35 http://ftp.uk.debian.org/debian/ unstable/main libxft2 armel 2.2.0-3 [53.7 kB]
-Get:36 http://ftp.uk.debian.org/debian/ unstable/main fontconfig armel 2.8.0-3 [334 kB]
-Get:37 http://ftp.uk.debian.org/debian/ unstable/main libpango1.0-0 armel 1.28.4-2 [407 kB]
-Get:38 http://ftp.uk.debian.org/debian/ unstable/main libsm6 armel 2:1.2.0-2 [28.1 kB]
-Get:39 http://ftp.uk.debian.org/debian/ unstable/main libxext6 armel 2:1.3.0-3 [46.0 kB]
-Get:40 http://ftp.uk.debian.org/debian/ unstable/main libxt6 armel 1:1.1.1-2 [177 kB]
-Get:41 http://ftp.uk.debian.org/debian/ unstable/main bsdmainutils armel 8.2.3 [207 kB]
-Get:42 http://ftp.uk.debian.org/debian/ unstable/main groff-base armel 1.21-6 [1072 kB]
-Get:43 http://ftp.uk.debian.org/debian/ unstable/main man-db armel 2.6.0.2-2 [990 kB]
-Get:44 http://ftp.uk.debian.org/debian/ unstable/main libmagic1 armel 5.04-5+b1 [235 kB]
-Get:45 http://ftp.uk.debian.org/debian/ unstable/main file armel 5.04-5+b1 [49.4 kB]
-Get:46 http://ftp.uk.debian.org/debian/ unstable/main gettext-base armel 0.18.1.1-3 [129 kB]
-Get:47 http://ftp.uk.debian.org/debian/ unstable/main libxml2 armel 2.7.8.dfsg-4 [815 kB]
-Get:48 http://ftp.uk.debian.org/debian/ unstable/main html2text armel 1.3.2a-15 [97.0 kB]
-Get:49 http://ftp.uk.debian.org/debian/ unstable/main libcroco3 armel 0.6.2-1 [113 kB]
-Get:50 http://ftp.uk.debian.org/debian/ unstable/main libunistring0 armel 0.9.3-4 [409 kB]
-Get:51 http://ftp.uk.debian.org/debian/ unstable/main gettext armel 0.18.1.1-3 [1981 kB]
-Get:52 http://ftp.uk.debian.org/debian/ unstable/main intltool-debian all 0.35.0+20060710.1 [30.8 kB]
-Get:53 http://ftp.uk.debian.org/debian/ unstable/main po-debconf all 1.0.16+nmu1 [223 kB]
-Get:54 http://ftp.uk.debian.org/debian/ unstable/main debhelper all 8.9.3 [561 kB]
-Get:55 http://ftp.uk.debian.org/debian/ unstable/main cdbs all 0.4.96 [75.8 kB]
-Get:56 http://ftp.uk.debian.org/debian/ unstable/main cpp armel 4:4.6.1-2 [15.9 kB]
-Get:57 http://ftp.uk.debian.org/debian/ unstable/main dpatch all 2.0.31 [92.3 kB]
-Get:58 http://ftp.uk.debian.org/debian/ unstable/main gcc armel 4:4.6.1-2 [5038 B]
-Get:59 http://ftp.uk.debian.org/debian/ unstable/main gfortran-4.6 armel 4.6.1-4 [4925 kB]
-Get:60 http://ftp.uk.debian.org/debian/ unstable/main gfortran armel 4:4.6.1-2 [1124 B]
-Get:61 http://ftp.uk.debian.org/debian/ unstable/main libblas3gf armel 1.2-8 [268 kB]
-Get:62 http://ftp.uk.debian.org/debian/ unstable/main libblas-dev armel 1.2-8 [290 kB]
-Get:63 http://ftp.uk.debian.org/debian/ unstable/main libbz2-dev armel 1.0.5-6 [34.6 kB]
-Get:64 http://ftp.uk.debian.org/debian/ unstable/main libjpeg62 armel 6b1-2 [88.6 kB]
-Get:65 http://ftp.uk.debian.org/debian/ unstable/main libjpeg8 armel 8c-2 [152 kB]
+8 upgraded, 76 newly installed, 0 to remove and 7 not upgraded.
+Need to get 67.0 MB of archives.
+After this operation, 119 MB of additional disk space will be used.
+Get:1 http://ftp.uk.debian.org/debian/ unstable/main libgomp1 armel 4.6.2-1 [28.4 kB]
+Get:2 http://ftp.uk.debian.org/debian/ unstable/main gcc-4.6-base armel 4.6.2-1 [136 kB]
+Get:3 http://ftp.uk.debian.org/debian/ unstable/main libgcc1 armel 1:4.6.2-1 [24.7 kB]
+Get:4 http://ftp.uk.debian.org/debian/ unstable/main cpp-4.6 armel 4.6.2-1 [4330 kB]
+Get:5 http://ftp.uk.debian.org/debian/ unstable/main libstdc++6-4.6-dev armel 4.6.2-1 [1709 kB]
+Get:6 http://ftp.uk.debian.org/debian/ unstable/main g++-4.6 armel 4.6.2-1 [5205 kB]
+Get:7 http://ftp.uk.debian.org/debian/ unstable/main gcc-4.6 armel 4.6.2-1 [4541 kB]
+Get:8 http://ftp.uk.debian.org/debian/ unstable/main libstdc++6 armel 4.6.2-1 [291 kB]
+Get:9 http://ftp.uk.debian.org/debian/ unstable/main libpipeline1 armel 1.2.0-4 [34.0 kB]
+Get:10 http://ftp.uk.debian.org/debian/ unstable/main libpcre3 armel 8.12-4 [223 kB]
+Get:11 http://ftp.uk.debian.org/debian/ unstable/main libglib2.0-0 armel 2.28.8-1 [1552 kB]
+Get:12 http://ftp.uk.debian.org/debian/ unstable/main libxml2 armel 2.7.8.dfsg-5 [815 kB]
+Get:13 http://ftp.uk.debian.org/debian/ unstable/main libcroco3 armel 0.6.2-2 [110 kB]
+Get:14 http://ftp.uk.debian.org/debian/ unstable/main libdatrie1 armel 0.2.4-3 [25.4 kB]
+Get:15 http://ftp.uk.debian.org/debian/ unstable/main libexpat1 armel 2.0.1-7.1 [114 kB]
+Get:16 http://ftp.uk.debian.org/debian/ unstable/main libfreetype6 armel 2.4.7-2 [391 kB]
+Get:17 http://ftp.uk.debian.org/debian/ unstable/main ucf all 3.0025+nmu2 [70.6 kB]
+Get:18 http://ftp.uk.debian.org/debian/ unstable/main ttf-dejavu-core all 2.33-2 [1552 kB]
+Get:19 http://ftp.uk.debian.org/debian/ unstable/main fontconfig-config all 2.8.0-3 [221 kB]
+Get:20 http://ftp.uk.debian.org/debian/ unstable/main libfontconfig1 armel 2.8.0-3 [270 kB]
+Get:21 http://ftp.uk.debian.org/debian/ unstable/main libgfortran3 armel 4.6.2-1 [255 kB]
+Get:22 http://ftp.uk.debian.org/debian/ unstable/main x11-common all 1:7.6+9 [276 kB]
+Get:23 http://ftp.uk.debian.org/debian/ unstable/main libice6 armel 2:1.0.7-2 [50.1 kB]
+Get:24 http://ftp.uk.debian.org/debian/ unstable/main libpixman-1-0 armel 0.23.8-1 [401 kB]
+Get:25 http://ftp.uk.debian.org/debian/ unstable/main libpng12-0 armel 1.2.46-3 [181 kB]
+Get:26 http://ftp.uk.debian.org/debian/ unstable/main libxau6 armel 1:1.0.6-3 [16.0 kB]
+Get:27 http://ftp.uk.debian.org/debian/ unstable/main libxdmcp6 armel 1:1.1.0-3 [21.5 kB]
+Get:28 http://ftp.uk.debian.org/debian/ unstable/main libxcb1 armel 1.7-3 [39.5 kB]
+Get:29 http://ftp.uk.debian.org/debian/ unstable/main libx11-data all 2:1.4.4-2 [183 kB]
+Get:30 http://ftp.uk.debian.org/debian/ unstable/main libx11-6 armel 2:1.4.4-2 [833 kB]
+Get:31 http://ftp.uk.debian.org/debian/ unstable/main libxcb-render0 armel 1.7-3 [14.8 kB]
+Get:32 http://ftp.uk.debian.org/debian/ unstable/main libxcb-shm0 armel 1.7-3 [9178 B]
+Get:33 http://ftp.uk.debian.org/debian/ unstable/main libxrender1 armel 1:0.9.6-2 [30.4 kB]
+Get:34 http://ftp.uk.debian.org/debian/ unstable/main libcairo2 armel 1.10.2-6.1 [908 kB]
+Get:35 http://ftp.uk.debian.org/debian/ unstable/main libthai-data all 0.1.15-2 [201 kB]
+Get:36 http://ftp.uk.debian.org/debian/ unstable/main libthai0 armel 0.1.15-2 [40.4 kB]
+Get:37 http://ftp.uk.debian.org/debian/ unstable/main libxft2 armel 2.2.0-3 [53.7 kB]
+Get:38 http://ftp.uk.debian.org/debian/ unstable/main fontconfig armel 2.8.0-3 [334 kB]
+Get:39 http://ftp.uk.debian.org/debian/ unstable/main libpango1.0-0 armel 1.29.4-2 [422 kB]
+Get:40 http://ftp.uk.debian.org/debian/ unstable/main libpcrecpp0 armel 8.12-4 [111 kB]
+Get:41 http://ftp.uk.debian.org/debian/ unstable/main libsm6 armel 2:1.2.0-2 [28.1 kB]
+Get:42 http://ftp.uk.debian.org/debian/ unstable/main libjpeg8 armel 8c-2 [152 kB]
+Get:43 http://ftp.uk.debian.org/debian/ unstable/main libtiff4 armel 3.9.5-2 [188 kB]
+Get:44 http://ftp.uk.debian.org/debian/ unstable/main libunistring0 armel 0.9.3-5 [406 kB]
+Get:45 http://ftp.uk.debian.org/debian/ unstable/main libxext6 armel 2:1.3.0-3 [46.0 kB]
+Get:46 http://ftp.uk.debian.org/debian/ unstable/main libxss1 armel 1:1.2.1-2 [16.0 kB]
+Get:47 http://ftp.uk.debian.org/debian/ unstable/main libxt6 armel 1:1.1.1-2 [177 kB]
+Get:48 http://ftp.uk.debian.org/debian/ unstable/main bsdmainutils armel 8.2.3 [207 kB]
+Get:49 http://ftp.uk.debian.org/debian/ unstable/main groff-base armel 1.21-6 [1072 kB]
+Get:50 http://ftp.uk.debian.org/debian/ unstable/main man-db armel 2.6.0.2-2 [990 kB]
+Get:51 http://ftp.uk.debian.org/debian/ unstable/main libmagic1 armel 5.09-2 [247 kB]
+Get:52 http://ftp.uk.debian.org/debian/ unstable/main file armel 5.09-2 [51.8 kB]
+Get:53 http://ftp.uk.debian.org/debian/ unstable/main gettext-base armel 0.18.1.1-5 [138 kB]
+Get:54 http://ftp.uk.debian.org/debian/ unstable/main cdbs all 0.4.99 [77.1 kB]
+Get:55 http://ftp.uk.debian.org/debian/ unstable/main html2text armel 1.3.2a-15 [97.0 kB]
+Get:56 http://ftp.uk.debian.org/debian/ unstable/main gettext armel 0.18.1.1-5 [1980 kB]
+Get:57 http://ftp.uk.debian.org/debian/ unstable/main intltool-debian all 0.35.0+20060710.1 [30.8 kB]
+Get:58 http://ftp.uk.debian.org/debian/ unstable/main po-debconf all 1.0.16+nmu1 [223 kB]
+Get:59 http://ftp.uk.debian.org/debian/ unstable/main debhelper all 8.9.8 [552 kB]
+Get:60 http://ftp.uk.debian.org/debian/ unstable/main dpatch all 2.0.33 [95.9 kB]
+Get:61 http://ftp.uk.debian.org/debian/ unstable/main gfortran-4.6 armel 4.6.2-1 [4924 kB]
+Get:62 http://ftp.uk.debian.org/debian/ unstable/main gfortran armel 4:4.6.1-3 [1126 B]
+Get:63 http://ftp.uk.debian.org/debian/ unstable/main libblas3gf armel 1.2.20110419-2 [278 kB]
+Get:64 http://ftp.uk.debian.org/debian/ unstable/main libblas-dev armel 1.2.20110419-2 [287 kB]
+Get:65 http://ftp.uk.debian.org/debian/ unstable/main libbz2-dev armel 1.0.5-7 [34.1 kB]
Get:66 http://ftp.uk.debian.org/debian/ unstable/main libjpeg8-dev armel 8c-2 [258 kB]
-Get:67 http://ftp.uk.debian.org/debian/ unstable/main liblapack3gf armel 3.3.0-4 [2146 kB]
-Get:68 http://ftp.uk.debian.org/debian/ unstable/main liblapack-dev armel 3.3.0-4 [2348 kB]
-Get:69 http://ftp.uk.debian.org/debian/ unstable/main libncurses5-dev armel 5.9-1 [474 kB]
-Get:70 http://ftp.uk.debian.org/debian/ unstable/main libpaper1 armel 1.1.24+nmu1 [22.6 kB]
-Get:71 http://ftp.uk.debian.org/debian/ unstable/main libpaper-utils armel 1.1.24+nmu1 [18.7 kB]
-Get:72 http://ftp.uk.debian.org/debian/ unstable/main libpcrecpp0 armel 8.12-3 [112 kB]
-Get:73 http://ftp.uk.debian.org/debian/ unstable/main libpcre3-dev armel 8.12-3 [301 kB]
+Get:67 http://ftp.uk.debian.org/debian/ unstable/main liblapack3gf armel 3.3.1-1 [2200 kB]
+Get:68 http://ftp.uk.debian.org/debian/ unstable/main liblapack-dev armel 3.3.1-1 [2374 kB]
+Get:69 http://ftp.uk.debian.org/debian/ unstable/main libtinfo-dev armel 5.9-2 [64.3 kB]
+Get:70 http://ftp.uk.debian.org/debian/ unstable/main libncurses5-dev armel 5.9-2 [411 kB]
+Get:71 http://ftp.uk.debian.org/debian/ unstable/main libpaper1 armel 1.1.24+nmu1 [22.6 kB]
+Get:72 http://ftp.uk.debian.org/debian/ unstable/main libpaper-utils armel 1.1.24+nmu1 [18.7 kB]
+Get:73 http://ftp.uk.debian.org/debian/ unstable/main libpcre3-dev armel 8.12-4 [301 kB]
Get:74 http://ftp.uk.debian.org/debian/ unstable/main zlib1g-dev armel 1:1.2.3.4.dfsg-3 [190 kB]
Get:75 http://ftp.uk.debian.org/debian/ unstable/main libpng12-dev armel 1.2.46-3 [259 kB]
-Get:76 http://ftp.uk.debian.org/debian/ unstable/main libreadline6-dev armel 6.2-2 [237 kB]
-Get:77 http://ftp.uk.debian.org/debian/ unstable/main libreadline-dev armel 6.2-2 [880 B]
-Get:78 http://ftp.uk.debian.org/debian/ unstable/main libtiff4 armel 3.9.5-1 [191 kB]
-Get:79 http://ftp.uk.debian.org/debian/ unstable/main libxss1 armel 1:1.2.1-1 [16.0 kB]
-Get:80 http://ftp.uk.debian.org/debian/ unstable/main zip armel 3.0-4 [329 kB]
-Get:81 http://ftp.uk.debian.org/debian/ unstable/main unzip armel 6.0-5 [190 kB]
-Get:82 http://ftp.uk.debian.org/debian/ unstable/main xdg-utils all 1.1.0~rc1-2 [70.2 kB]
-Get:83 http://ftp.uk.debian.org/debian/ unstable/main tcl8.5 armel 8.5.10-1 [1569 kB]
-Get:84 http://ftp.uk.debian.org/debian/ unstable/main tk8.5 armel 8.5.10-1 [1123 kB]
-Get:85 http://ftp.uk.debian.org/debian/ unstable/main r-base-core armel 2.13.1-1 [15.1 MB]
-Get:86 http://ftp.uk.debian.org/debian/ unstable/main r-base-dev all 2.13.1-1 [3490 B]
+Get:76 http://ftp.uk.debian.org/debian/ unstable/main libreadline6-dev armel 6.2-7 [237 kB]
+Get:77 http://ftp.uk.debian.org/debian/ unstable/main libreadline-dev armel 6.2-7 [888 B]
+Get:78 http://ftp.uk.debian.org/debian/ unstable/main zip armel 3.0-4 [329 kB]
+Get:79 http://ftp.uk.debian.org/debian/ unstable/main unzip armel 6.0-5 [190 kB]
+Get:80 http://ftp.uk.debian.org/debian/ unstable/main xdg-utils all 1.1.0~rc1-2 [70.2 kB]
+Get:81 http://ftp.uk.debian.org/debian/ unstable/main tcl8.5 armel 8.5.10-1 [1569 kB]
+Get:82 http://ftp.uk.debian.org/debian/ unstable/main tk8.5 armel 8.5.10-1 [1123 kB]
+Get:83 http://ftp.uk.debian.org/debian/ unstable/main r-base-core armel 2.14.0-1 [19.1 MB]
+Get:84 http://ftp.uk.debian.org/debian/ unstable/main r-base-dev all 2.14.0-1 [3488 B]
debconf: delaying package configuration, since apt-utils is not installed
-Fetched 63.0 MB in 15s (4028 kB/s)
-(Reading database ... 10513 files and directories currently installed.)
-Preparing to replace libgomp1 4.6.0-13 (using .../libgomp1_4.6.1-4_armel.deb) ...
+Fetched 67.0 MB in 8s (7571 kB/s)
+(Reading database ... 10465 files and directories currently installed.)
+Preparing to replace libgomp1 4.6.1-16 (using .../libgomp1_4.6.2-1_armel.deb) ...
Unpacking replacement libgomp1 ...
-Preparing to replace gcc-4.6-base 4.6.0-13 (using .../gcc-4.6-base_4.6.1-4_armel.deb) ...
+Preparing to replace gcc-4.6-base 4.6.1-16 (using .../gcc-4.6-base_4.6.2-1_armel.deb) ...
Unpacking replacement gcc-4.6-base ...
-Setting up gcc-4.6-base (4.6.1-4) ...
-(Reading database ... 10514 files and directories currently installed.)
-Preparing to replace libgcc1 1:4.6.0-13 (using .../libgcc1_1%3a4.6.1-4_armel.deb) ...
+Setting up gcc-4.6-base (4.6.2-1) ...
+(Reading database ... 10466 files and directories currently installed.)
+Preparing to replace libgcc1 1:4.6.1-16 (using .../libgcc1_1%3a4.6.2-1_armel.deb) ...
Unpacking replacement libgcc1 ...
-Setting up libgcc1 (1:4.6.1-4) ...
-(Reading database ... 10514 files and directories currently installed.)
-Preparing to replace cpp-4.6 4.6.0-13 (using .../cpp-4.6_4.6.1-4_armel.deb) ...
+Setting up libgcc1 (1:4.6.2-1) ...
+(Reading database ... 10466 files and directories currently installed.)
+Preparing to replace cpp-4.6 4.6.1-16 (using .../cpp-4.6_4.6.2-1_armel.deb) ...
Unpacking replacement cpp-4.6 ...
-Preparing to replace libstdc++6-4.6-dev 4.6.0-13 (using .../libstdc++6-4.6-dev_4.6.1-4_armel.deb) ...
+Preparing to replace libstdc++6-4.6-dev 4.6.1-16 (using .../libstdc++6-4.6-dev_4.6.2-1_armel.deb) ...
Unpacking replacement libstdc++6-4.6-dev ...
-Preparing to replace g++-4.6 4.6.0-13 (using .../g++-4.6_4.6.1-4_armel.deb) ...
+Preparing to replace g++-4.6 4.6.1-16 (using .../g++-4.6_4.6.2-1_armel.deb) ...
Unpacking replacement g++-4.6 ...
-Preparing to replace gcc-4.6 4.6.0-13 (using .../gcc-4.6_4.6.1-4_armel.deb) ...
+Preparing to replace gcc-4.6 4.6.1-16 (using .../gcc-4.6_4.6.2-1_armel.deb) ...
Unpacking replacement gcc-4.6 ...
-Preparing to replace libstdc++6 4.6.0-13 (using .../libstdc++6_4.6.1-4_armel.deb) ...
+Preparing to replace libstdc++6 4.6.1-16 (using .../libstdc++6_4.6.2-1_armel.deb) ...
Unpacking replacement libstdc++6 ...
-Setting up libstdc++6 (4.6.1-4) ...
-Selecting previously deselected package libpipeline1.
-(Reading database ... 10523 files and directories currently installed.)
-Unpacking libpipeline1 (from .../libpipeline1_1.2.0-3_armel.deb) ...
-Selecting previously deselected package libdatrie1.
+Setting up libstdc++6 (4.6.2-1) ...
+Selecting previously unselected package libpipeline1.
+(Reading database ... 10466 files and directories currently installed.)
+Unpacking libpipeline1 (from .../libpipeline1_1.2.0-4_armel.deb) ...
+Selecting previously unselected package libpcre3.
+Unpacking libpcre3 (from .../libpcre3_8.12-4_armel.deb) ...
+Selecting previously unselected package libglib2.0-0.
+Unpacking libglib2.0-0 (from .../libglib2.0-0_2.28.8-1_armel.deb) ...
+Selecting previously unselected package libxml2.
+Unpacking libxml2 (from .../libxml2_2.7.8.dfsg-5_armel.deb) ...
+Selecting previously unselected package libcroco3.
+Unpacking libcroco3 (from .../libcroco3_0.6.2-2_armel.deb) ...
+Selecting previously unselected package libdatrie1.
Unpacking libdatrie1 (from .../libdatrie1_0.2.4-3_armel.deb) ...
-Selecting previously deselected package libexpat1.
-Unpacking libexpat1 (from .../libexpat1_2.0.1-7_armel.deb) ...
-Selecting previously deselected package libfreetype6.
-Unpacking libfreetype6 (from .../libfreetype6_2.4.4-2_armel.deb) ...
-Selecting previously deselected package ucf.
+Selecting previously unselected package libexpat1.
+Unpacking libexpat1 (from .../libexpat1_2.0.1-7.1_armel.deb) ...
+Selecting previously unselected package libfreetype6.
+Unpacking libfreetype6 (from .../libfreetype6_2.4.7-2_armel.deb) ...
+Selecting previously unselected package ucf.
Unpacking ucf (from .../ucf_3.0025+nmu2_all.deb) ...
Moving old data out of the way
-Selecting previously deselected package ttf-dejavu-core.
-Unpacking ttf-dejavu-core (from .../ttf-dejavu-core_2.33-1_all.deb) ...
-Selecting previously deselected package fontconfig-config.
+Selecting previously unselected package ttf-dejavu-core.
+Unpacking ttf-dejavu-core (from .../ttf-dejavu-core_2.33-2_all.deb) ...
+Selecting previously unselected package fontconfig-config.
Unpacking fontconfig-config (from .../fontconfig-config_2.8.0-3_all.deb) ...
-Selecting previously deselected package libfontconfig1.
+Selecting previously unselected package libfontconfig1.
Unpacking libfontconfig1 (from .../libfontconfig1_2.8.0-3_armel.deb) ...
-Selecting previously deselected package libgfortran3.
-Unpacking libgfortran3 (from .../libgfortran3_4.6.1-4_armel.deb) ...
-Selecting previously deselected package x11-common.
-Unpacking x11-common (from .../x11-common_1%3a7.6+7_all.deb) ...
-Selecting previously deselected package libice6.
+Selecting previously unselected package libgfortran3.
+Unpacking libgfortran3 (from .../libgfortran3_4.6.2-1_armel.deb) ...
+Selecting previously unselected package x11-common.
+Unpacking x11-common (from .../x11-common_1%3a7.6+9_all.deb) ...
+Selecting previously unselected package libice6.
Unpacking libice6 (from .../libice6_2%3a1.0.7-2_armel.deb) ...
-Selecting previously deselected package libpixman-1-0.
-Unpacking libpixman-1-0 (from .../libpixman-1-0_0.22.2-1_armel.deb) ...
-Selecting previously deselected package libpng12-0.
+Selecting previously unselected package libpixman-1-0.
+Unpacking libpixman-1-0 (from .../libpixman-1-0_0.23.8-1_armel.deb) ...
+Selecting previously unselected package libpng12-0.
Unpacking libpng12-0 (from .../libpng12-0_1.2.46-3_armel.deb) ...
-Selecting previously deselected package libxau6.
+Selecting previously unselected package libxau6.
Unpacking libxau6 (from .../libxau6_1%3a1.0.6-3_armel.deb) ...
-Selecting previously deselected package libxdmcp6.
+Selecting previously unselected package libxdmcp6.
Unpacking libxdmcp6 (from .../libxdmcp6_1%3a1.1.0-3_armel.deb) ...
-Selecting previously deselected package libxcb1.
+Selecting previously unselected package libxcb1.
Unpacking libxcb1 (from .../libxcb1_1.7-3_armel.deb) ...
-Selecting previously deselected package libx11-data.
-Unpacking libx11-data (from .../libx11-data_2%3a1.4.4-1_all.deb) ...
-Selecting previously deselected package libx11-6.
-Unpacking libx11-6 (from .../libx11-6_2%3a1.4.4-1_armel.deb) ...
-Selecting previously deselected package libxcb-render0.
+Selecting previously unselected package libx11-data.
+Unpacking libx11-data (from .../libx11-data_2%3a1.4.4-2_all.deb) ...
+Selecting previously unselected package libx11-6.
+Unpacking libx11-6 (from .../libx11-6_2%3a1.4.4-2_armel.deb) ...
+Selecting previously unselected package libxcb-render0.
Unpacking libxcb-render0 (from .../libxcb-render0_1.7-3_armel.deb) ...
-Selecting previously deselected package libxcb-shm0.
+Selecting previously unselected package libxcb-shm0.
Unpacking libxcb-shm0 (from .../libxcb-shm0_1.7-3_armel.deb) ...
-Selecting previously deselected package libxrender1.
+Selecting previously unselected package libxrender1.
Unpacking libxrender1 (from .../libxrender1_1%3a0.9.6-2_armel.deb) ...
-Selecting previously deselected package libcairo2.
+Selecting previously unselected package libcairo2.
Unpacking libcairo2 (from .../libcairo2_1.10.2-6.1_armel.deb) ...
-Selecting previously deselected package libpcre3.
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-Selecting previously deselected package libthai-data.
+Selecting previously unselected package libthai-data.
Unpacking libthai-data (from .../libthai-data_0.1.15-2_all.deb) ...
-Selecting previously deselected package libthai0.
+Selecting previously unselected package libthai0.
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+Selecting previously unselected package libxft2.
Unpacking libxft2 (from .../libxft2_2.2.0-3_armel.deb) ...
-Selecting previously deselected package fontconfig.
+Selecting previously unselected package fontconfig.
Unpacking fontconfig (from .../fontconfig_2.8.0-3_armel.deb) ...
-Selecting previously deselected package libpango1.0-0.
-Unpacking libpango1.0-0 (from .../libpango1.0-0_1.28.4-2_armel.deb) ...
-Selecting previously deselected package libsm6.
+Selecting previously unselected package libpango1.0-0.
+Unpacking libpango1.0-0 (from .../libpango1.0-0_1.29.4-2_armel.deb) ...
+Selecting previously unselected package libpcrecpp0.
+Unpacking libpcrecpp0 (from .../libpcrecpp0_8.12-4_armel.deb) ...
+Selecting previously unselected package libsm6.
Unpacking libsm6 (from .../libsm6_2%3a1.2.0-2_armel.deb) ...
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+Selecting previously unselected package libjpeg8.
+Unpacking libjpeg8 (from .../libjpeg8_8c-2_armel.deb) ...
+Selecting previously unselected package libtiff4.
+Unpacking libtiff4 (from .../libtiff4_3.9.5-2_armel.deb) ...
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+Unpacking libunistring0 (from .../libunistring0_0.9.3-5_armel.deb) ...
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Unpacking libxext6 (from .../libxext6_2%3a1.3.0-3_armel.deb) ...
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+Unpacking libxss1 (from .../libxss1_1%3a1.2.1-2_armel.deb) ...
+Selecting previously unselected package libxt6.
Unpacking libxt6 (from .../libxt6_1%3a1.1.1-2_armel.deb) ...
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+Selecting previously unselected package bsdmainutils.
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-Unpacking libxml2 (from .../libxml2_2.7.8.dfsg-4_armel.deb) ...
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+Selecting previously unselected package libmagic1.
+Unpacking libmagic1 (from .../libmagic1_5.09-2_armel.deb) ...
+Selecting previously unselected package file.
+Unpacking file (from .../archives/file_5.09-2_armel.deb) ...
+Selecting previously unselected package gettext-base.
+Unpacking gettext-base (from .../gettext-base_0.18.1.1-5_armel.deb) ...
+Selecting previously unselected package cdbs.
+Unpacking cdbs (from .../archives/cdbs_0.4.99_all.deb) ...
+Selecting previously unselected package html2text.
Unpacking html2text (from .../html2text_1.3.2a-15_armel.deb) ...
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-Selecting previously deselected package gettext.
-Unpacking gettext (from .../gettext_0.18.1.1-3_armel.deb) ...
-Selecting previously deselected package intltool-debian.
+Selecting previously unselected package gettext.
+Unpacking gettext (from .../gettext_0.18.1.1-5_armel.deb) ...
+Selecting previously unselected package intltool-debian.
Unpacking intltool-debian (from .../intltool-debian_0.35.0+20060710.1_all.deb) ...
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Unpacking po-debconf (from .../po-debconf_1.0.16+nmu1_all.deb) ...
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-Preparing to replace cpp 4:4.6.0-5 (using .../cpp_4%3a4.6.1-2_armel.deb) ...
-Unpacking replacement cpp ...
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-Preparing to replace gcc 4:4.6.0-5 (using .../gcc_4%3a4.6.1-2_armel.deb) ...
-Removing old gcc doc directory.
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-Selecting previously deselected package libjpeg8-dev.
+Selecting previously unselected package debhelper.
+Unpacking debhelper (from .../debhelper_8.9.8_all.deb) ...
+Selecting previously unselected package dpatch.
+Unpacking dpatch (from .../archives/dpatch_2.0.33_all.deb) ...
+Selecting previously unselected package gfortran-4.6.
+Unpacking gfortran-4.6 (from .../gfortran-4.6_4.6.2-1_armel.deb) ...
+Selecting previously unselected package gfortran.
+Unpacking gfortran (from .../gfortran_4%3a4.6.1-3_armel.deb) ...
+Selecting previously unselected package libblas3gf.
+Unpacking libblas3gf (from .../libblas3gf_1.2.20110419-2_armel.deb) ...
+Selecting previously unselected package libblas-dev.
+Unpacking libblas-dev (from .../libblas-dev_1.2.20110419-2_armel.deb) ...
+Selecting previously unselected package libbz2-dev.
+Unpacking libbz2-dev (from .../libbz2-dev_1.0.5-7_armel.deb) ...
+Selecting previously unselected package libjpeg8-dev.
Unpacking libjpeg8-dev (from .../libjpeg8-dev_8c-2_armel.deb) ...
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-Unpacking libncurses5-dev (from .../libncurses5-dev_5.9-1_armel.deb) ...
-Selecting previously deselected package libpaper1.
+Selecting previously unselected package liblapack3gf.
+Unpacking liblapack3gf (from .../liblapack3gf_3.3.1-1_armel.deb) ...
+Selecting previously unselected package liblapack-dev.
+Unpacking liblapack-dev (from .../liblapack-dev_3.3.1-1_armel.deb) ...
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+Unpacking libtinfo-dev (from .../libtinfo-dev_5.9-2_armel.deb) ...
+Selecting previously unselected package libncurses5-dev.
+Unpacking libncurses5-dev (from .../libncurses5-dev_5.9-2_armel.deb) ...
+Selecting previously unselected package libpaper1.
Unpacking libpaper1 (from .../libpaper1_1.1.24+nmu1_armel.deb) ...
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-Unpacking libpcre3-dev (from .../libpcre3-dev_8.12-3_armel.deb) ...
-Selecting previously deselected package zlib1g-dev.
+Selecting previously unselected package libpcre3-dev.
+Unpacking libpcre3-dev (from .../libpcre3-dev_8.12-4_armel.deb) ...
+Selecting previously unselected package zlib1g-dev.
Unpacking zlib1g-dev (from .../zlib1g-dev_1%3a1.2.3.4.dfsg-3_armel.deb) ...
-Selecting previously deselected package libpng12-dev.
+Selecting previously unselected package libpng12-dev.
Unpacking libpng12-dev (from .../libpng12-dev_1.2.46-3_armel.deb) ...
-Selecting previously deselected package libreadline6-dev.
-Unpacking libreadline6-dev (from .../libreadline6-dev_6.2-2_armel.deb) ...
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-Selecting previously deselected package libxss1.
-Unpacking libxss1 (from .../libxss1_1%3a1.2.1-1_armel.deb) ...
-Selecting previously deselected package zip.
+Selecting previously unselected package libreadline6-dev.
+Unpacking libreadline6-dev (from .../libreadline6-dev_6.2-7_armel.deb) ...
+Selecting previously unselected package libreadline-dev.
+Unpacking libreadline-dev (from .../libreadline-dev_6.2-7_armel.deb) ...
+Selecting previously unselected package zip.
Unpacking zip (from .../archives/zip_3.0-4_armel.deb) ...
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+Selecting previously unselected package unzip.
Unpacking unzip (from .../archives/unzip_6.0-5_armel.deb) ...
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+Selecting previously unselected package xdg-utils.
Unpacking xdg-utils (from .../xdg-utils_1.1.0~rc1-2_all.deb) ...
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+Selecting previously unselected package tcl8.5.
Unpacking tcl8.5 (from .../tcl8.5_8.5.10-1_armel.deb) ...
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+Selecting previously unselected package tk8.5.
Unpacking tk8.5 (from .../tk8.5_8.5.10-1_armel.deb) ...
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-Unpacking r-base-dev (from .../r-base-dev_2.13.1-1_all.deb) ...
-Setting up libgomp1 (4.6.1-4) ...
-Setting up cpp-4.6 (4.6.1-4) ...
-Setting up gcc-4.6 (4.6.1-4) ...
-Setting up libpipeline1 (1.2.0-3) ...
+Selecting previously unselected package r-base-core.
+Unpacking r-base-core (from .../r-base-core_2.14.0-1_armel.deb) ...
+Selecting previously unselected package r-base-dev.
+Unpacking r-base-dev (from .../r-base-dev_2.14.0-1_all.deb) ...
+Setting up libgomp1 (4.6.2-1) ...
+Setting up cpp-4.6 (4.6.2-1) ...
+Setting up gcc-4.6 (4.6.2-1) ...
+Setting up libpipeline1 (1.2.0-4) ...
+Setting up libpcre3 (8.12-4) ...
+Setting up libglib2.0-0 (2.28.8-1) ...
+No schema files found: doing nothing.
+Setting up libxml2 (2.7.8.dfsg-5) ...
+Setting up libcroco3 (0.6.2-2) ...
Setting up libdatrie1 (0.2.4-3) ...
-Setting up libexpat1 (2.0.1-7) ...
-Setting up libfreetype6 (2.4.4-2) ...
+Setting up libexpat1 (2.0.1-7.1) ...
+Setting up libfreetype6 (2.4.7-2) ...
Setting up ucf (3.0025+nmu2) ...
-Setting up ttf-dejavu-core (2.33-1) ...
+Setting up ttf-dejavu-core (2.33-2) ...
Setting up fontconfig-config (2.8.0-3) ...
Setting up libfontconfig1 (2.8.0-3) ...
-Setting up libgfortran3 (4.6.1-4) ...
-Setting up x11-common (1:7.6+7) ...
+Setting up libgfortran3 (4.6.2-1) ...
+Setting up x11-common (1:7.6+9) ...
All runlevel operations denied by policy
invoke-rc.d: policy-rc.d denied execution of start.
Setting up libice6 (2:1.0.7-2) ...
-Setting up libpixman-1-0 (0.22.2-1) ...
+Setting up libpixman-1-0 (0.23.8-1) ...
Setting up libpng12-0 (1.2.46-3) ...
Setting up libxau6 (1:1.0.6-3) ...
Setting up libxdmcp6 (1:1.1.0-3) ...
Setting up libxcb1 (1.7-3) ...
-Setting up libx11-data (2:1.4.4-1) ...
-Setting up libx11-6 (2:1.4.4-1) ...
+Setting up libx11-data (2:1.4.4-2) ...
+Setting up libx11-6 (2:1.4.4-2) ...
Setting up libxcb-render0 (1.7-3) ...
Setting up libxcb-shm0 (1.7-3) ...
Setting up libxrender1 (1:0.9.6-2) ...
Setting up libcairo2 (1.10.2-6.1) ...
-Setting up libpcre3 (8.12-3) ...
-Setting up libglib2.0-0 (2.28.6-1) ...
-No schema files found: doing nothing.
Setting up libthai-data (0.1.15-2) ...
Setting up libthai0 (0.1.15-2) ...
Setting up libxft2 (2.2.0-3) ...
Setting up fontconfig (2.8.0-3) ...
Cleaning up old fontconfig caches... done.
Regenerating fonts cache... done.
-Setting up libpango1.0-0 (1.28.4-2) ...
+Setting up libpango1.0-0 (1.29.4-2) ...
+Setting up libpcrecpp0 (8.12-4) ...
Setting up libsm6 (2:1.2.0-2) ...
+Setting up libjpeg8 (8c-2) ...
+Setting up libtiff4 (3.9.5-2) ...
+Setting up libunistring0 (0.9.3-5) ...
Setting up libxext6 (2:1.3.0-3) ...
+Setting up libxss1 (1:1.2.1-2) ...
Setting up libxt6 (1:1.1.1-2) ...
Setting up bsdmainutils (8.2.3) ...
update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode.
@@ -520,49 +520,40 @@ update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in
Setting up groff-base (1.21-6) ...
Setting up man-db (2.6.0.2-2) ...
Building database of manual pages ...
-Setting up libmagic1 (5.04-5+b1) ...
-Setting up file (5.04-5+b1) ...
-Setting up gettext-base (0.18.1.1-3) ...
-Setting up libxml2 (2.7.8.dfsg-4) ...
+Setting up libmagic1 (5.09-2) ...
+Setting up file (5.09-2) ...
+Setting up gettext-base (0.18.1.1-5) ...
+Setting up cdbs (0.4.99) ...
Setting up html2text (1.3.2a-15) ...
-Setting up libcroco3 (0.6.2-1) ...
-Setting up libunistring0 (0.9.3-4) ...
-Setting up gettext (0.18.1.1-3) ...
+Setting up gettext (0.18.1.1-5) ...
Setting up intltool-debian (0.35.0+20060710.1) ...
Setting up po-debconf (1.0.16+nmu1) ...
-Setting up debhelper (8.9.3) ...
-Setting up cdbs (0.4.96) ...
-Setting up cpp (4:4.6.1-2) ...
-Setting up dpatch (2.0.31) ...
-Setting up gcc (4:4.6.1-2) ...
-Setting up gfortran-4.6 (4.6.1-4) ...
-Setting up gfortran (4:4.6.1-2) ...
+Setting up debhelper (8.9.8) ...
+Setting up dpatch (2.0.33) ...
+Setting up gfortran-4.6 (4.6.2-1) ...
+Setting up gfortran (4:4.6.1-3) ...
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode.
-Setting up libblas3gf (1.2-8) ...
+Setting up libblas3gf (1.2.20110419-2) ...
update-alternatives: using /usr/lib/libblas/libblas.so.3gf to provide /usr/lib/libblas.so.3gf (libblas.so.3gf) in auto mode.
-Setting up libblas-dev (1.2-8) ...
+Setting up libblas-dev (1.2.20110419-2) ...
update-alternatives: using /usr/lib/libblas/libblas.so to provide /usr/lib/libblas.so (libblas.so) in auto mode.
-Setting up libbz2-dev (1.0.5-6) ...
-Setting up libjpeg62 (6b1-2) ...
-Setting up libjpeg8 (8c-2) ...
+Setting up libbz2-dev (1.0.5-7) ...
Setting up libjpeg8-dev (8c-2) ...
-Setting up liblapack3gf (3.3.0-4) ...
+Setting up liblapack3gf (3.3.1-1) ...
update-alternatives: using /usr/lib/lapack/liblapack.so.3gf to provide /usr/lib/liblapack.so.3gf (liblapack.so.3gf) in auto mode.
-Setting up liblapack-dev (3.3.0-4) ...
+Setting up liblapack-dev (3.3.1-1) ...
update-alternatives: using /usr/lib/lapack/liblapack.so to provide /usr/lib/liblapack.so (liblapack.so) in auto mode.
-Setting up libncurses5-dev (5.9-1) ...
+Setting up libtinfo-dev (5.9-2) ...
+Setting up libncurses5-dev (5.9-2) ...
Setting up libpaper1 (1.1.24+nmu1) ...
Creating config file /etc/papersize with new version
Setting up libpaper-utils (1.1.24+nmu1) ...
-Setting up libpcrecpp0 (8.12-3) ...
-Setting up libpcre3-dev (8.12-3) ...
+Setting up libpcre3-dev (8.12-4) ...
Setting up zlib1g-dev (1:1.2.3.4.dfsg-3) ...
Setting up libpng12-dev (1.2.46-3) ...
-Setting up libreadline6-dev (6.2-2) ...
-Setting up libreadline-dev (6.2-2) ...
-Setting up libtiff4 (3.9.5-1) ...
-Setting up libxss1 (1:1.2.1-1) ...
+Setting up libreadline6-dev (6.2-7) ...
+Setting up libreadline-dev (6.2-7) ...
Setting up zip (3.0-4) ...
Setting up unzip (6.0-5) ...
Setting up xdg-utils (1.1.0~rc1-2) ...
@@ -570,22 +561,22 @@ Setting up tcl8.5 (8.5.10-1) ...
update-alternatives: using /usr/bin/tclsh8.5 to provide /usr/bin/tclsh (tclsh) in auto mode.
Setting up tk8.5 (8.5.10-1) ...
update-alternatives: using /usr/bin/wish8.5 to provide /usr/bin/wish (wish) in auto mode.
-Setting up r-base-core (2.13.1-1) ...
+Setting up r-base-core (2.14.0-1) ...
Setting R_PAPERSIZE_USER default to 'a4'
Creating config file /etc/R/Renviron with new version
-Setting up r-base-dev (2.13.1-1) ...
-Setting up libstdc++6-4.6-dev (4.6.1-4) ...
-Setting up g++-4.6 (4.6.1-4) ...
+Setting up r-base-dev (2.14.0-1) ...
+Setting up libstdc++6-4.6-dev (4.6.2-1) ...
+Setting up g++-4.6 (4.6.2-1) ...
Removing negative dependencies:
Reading package lists...
Building dependency tree...
Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 46 not upgraded.
+0 upgraded, 0 newly installed, 0 to remove and 7 not upgraded.
Checking correctness of dependencies...
Kernel: Linux 2.6.32 armel (armv5tel)
-Toolchain package versions: binutils_2.21.52.20110606-2 dpkg-dev_1.16.0.3 g++-4.6_4.6.1-4 gcc-4.6_4.6.1-4 libc6-dev_2.13-5 libstdc++6_4.6.1-4 libstdc++6-4.6-dev_4.6.1-4 linux-libc-dev_2.6.39-2
-Package versions: apt_0.8.14.1 base-files_6.4 base-passwd_3.5.22 bash_4.1-3 binutils_2.21.52.20110606-2 bsdmainutils_8.2.3 bsdutils_1:2.17.2-9.1 build-essential_11.5 bzip2_1.0.5-6 cdbs_0.4.96 coreutils_8.5-1 cpp_4:4.6.1-2 cpp-4.6_4.6.1-4 dash_0.5.5.1-7.4 debconf_1.5.39 debfoster_2.7-1.1 debhelper_8.9.3 debian-archive-keyring_2010.08.28 debianutils_4.0.2 diffutils_1:3.0-1 dpatch_2.0.31 dpkg_1.16.0.3 dpkg-dev_1.16.0.3 e2fslibs_1.41.12-4 e2fsprogs_1.41.12-4 fakeroot_1.16-1 file_5.04-5+b1 findutils_4.4.2-1+b1 fontconfig_2.8.0-3 fontconfig-config_2.8.0-3 g++_4:4.6.0-5 g++-4.6_4.6.1-4 gcc_4:4.6.1-2 gcc-4.4-base_4.4.6-6 gcc-4.5-base_4.5.3-3 gcc-4.6_4.6.1-4 gcc-4.6-base_4.6.1-4 gettext_0.18.1.1-3 gettext-base_0.18.1.1-3 gfortran_4:4.6.1-2 gfortran-4.6_4.6.1-4 gnupg_1.4.11-3 gpgv_1.4.11-3 grep_2.8-2 groff-base_1.21-6 gzip_1.3.12-9 hostname_3.06 html2text_1.3.2a-15 initscripts_2.88dsf-13.10 insserv_1.14.0-2.1 intltool-debian_0.35.0+20060710.1 libacl1_2.2.49-5 libattr1_1:2.4.44-3 libblas-dev_1.2-8 libblas3gf_1.2-8 libblkid1_2.17.2-9.1 libbz2-1.0_1.0.5-6 libbz2-dev_1.0.5-6 libc-bin_2.13-5 libc-dev-bin_2.13-5 libc6_2.13-5 libc6-dev_2.13-5 libcairo2_1.10.2-6.1 libcloog-ppl0_0.15.9-3 libcomerr2_1.41.12-4 libcroco3_0.6.2-1 libdatrie1_0.2.4-3 libdb5.1_5.1.25-10 libdpkg-perl_1.16.0.3 libexpat1_2.0.1-7 libfontconfig1_2.8.0-3 libfreetype6_2.4.4-2 libgc1c2_1:7.1-8 libgcc1_1:4.6.1-4 libgdbm3_1.8.3-9 libgfortran3_4.6.1-4 libglib2.0-0_2.28.6-1 libgmp10_2:5.0.1+dfsg-7 libgmpxx4ldbl_2:5.0.1+dfsg-7 libgomp1_4.6.1-4 libice6_2:1.0.7-2 libjpeg62_6b1-2 libjpeg8_8c-2 libjpeg8-dev_8c-2 liblapack-dev_3.3.0-4 liblapack3gf_3.3.0-4 liblzma2_5.0.0-2 libmagic1_5.04-5+b1 libmpc2_0.9-3 libmpfr4_3.0.1-3 libncurses5_5.9-1 libncurses5-dev_5.9-1 libpam-modules_1.1.3-1 libpam-runtime_1.1.3-1 libpam0g_1.1.3-1 libpango1.0-0_1.28.4-2 libpaper-utils_1.1.24+nmu1 libpaper1_1.1.24+nmu1 libpcre3_8.12-3 libpcre3-dev_8.12-3 libpcrecpp0_8.12-3 libpipeline1_1.2.0-3 libpixman-1-0_0.22.2-1 libpng12-0_1.2.46-3 libpng12-dev_1.2.46-3 libppl-c4_0.11.2-3 libppl9_0.11.2-3 libpwl5_0.11.2-3 libreadline-dev_6.2-2 libreadline6_6.2-2 libreadline6-dev_6.2-2 libselinux1_2.0.98-1+b1 libsepol1_2.0.42-1 libslang2_2.2.4-2 libsm6_2:1.2.0-2 libss2_1.41.12-4 libstdc++6_4.6.1-4 libstdc++6-4.6-dev_4.6.1-4 libthai-data_0.1.15-2 libthai0_0.1.15-2 libtiff4_3.9.5-1 libtimedate-perl_1.2000-1 libunistring0_0.9.3-4 libusb-0.1-4_2:0.1.12-17 libuuid1_2.17.2-9.1 libx11-6_2:1.4.4-1 libx11-data_2:1.4.4-1 libxau6_1:1.0.6-3 libxcb-render0_1.7-3 libxcb-shm0_1.7-3 libxcb1_1.7-3 libxdmcp6_1:1.1.0-3 libxext6_2:1.3.0-3 libxft2_2.2.0-3 libxml2_2.7.8.dfsg-4 libxrender1_1:0.9.6-2 libxss1_1:1.2.1-1 libxt6_1:1.1.1-2 linux-libc-dev_2.6.39-2 login_1:4.1.4.2+svn3283-3 lsb-base_3.2-27 make_3.81-8.1 man-db_2.6.0.2-2 mawk_1.3.3-15 mount_2.17.2-9.1 multiarch-support_2.13-5 ncurses-base_5.9-1 ncurses-bin_5.9-1 passwd_1:4.1.4.2+svn3283-3 patch_2.6.1-2 perl_5.12.3-7+b1 perl-base_5.12.3-7+b1 perl-modules_5.12.3-7 po-debconf_1.0.16+nmu1 r-base-core_2.13.1-1 r-base-dev_2.13.1-1 readline-common_6.2-2 sed_4.2.1-9 sensible-utils_0.0.6 sudo_1.7.4p6-1 sysv-rc_2.88dsf-13.10 sysvinit_2.88dsf-13.10 sysvinit-utils_2.88dsf-13.10 tar_1.25-3 tcl8.5_8.5.10-1 tk8.5_8.5.10-1 ttf-dejavu-core_2.33-1 tzdata_2011g-1 ucf_3.0025+nmu2 unzip_6.0-5 util-linux_2.17.2-9.1 x11-common_1:7.6+7 xdg-utils_1.1.0~rc1-2 xz-utils_5.0.0-2 zip_3.0-4 zlib1g_1:1.2.3.4.dfsg-3 zlib1g-dev_1:1.2.3.4.dfsg-3
+Toolchain package versions: binutils_2.21.90.20111025-1 dpkg-dev_1.16.1.1 g++-4.6_4.6.2-1 gcc-4.6_4.6.2-1 libc6-dev_2.13-21 libstdc++6_4.6.2-1 libstdc++6-4.6-dev_4.6.2-1 linux-libc-dev_3.0.0-5
+Package versions: apt_0.8.15.9 base-files_6.5 base-passwd_3.5.23 bash_4.1-3 binutils_2.21.90.20111025-1 bsdmainutils_8.2.3 bsdutils_1:2.19.1-5 build-essential_11.5 bzip2_1.0.5-7 cdbs_0.4.99 coreutils_8.13-3 cpp_4:4.6.1-3 cpp-4.6_4.6.2-1 dash_0.5.7-2 debconf_1.5.41 debfoster_2.7-1.1 debhelper_8.9.8 debian-archive-keyring_2010.08.28 debianutils_4.0.4 diffutils_1:3.2-1 dpatch_2.0.33 dpkg_1.16.1.1 dpkg-dev_1.16.1.1 e2fslibs_1.42~WIP-2011-10-16-1 e2fsprogs_1.42~WIP-2011-10-16-1 fakeroot_1.18.1-1 file_5.09-2 findutils_4.4.2-1+b1 fontconfig_2.8.0-3 fontconfig-config_2.8.0-3 g++_4:4.6.1-3 g++-4.6_4.6.2-1 gcc_4:4.6.1-3 gcc-4.4-base_4.4.6-11 gcc-4.5-base_4.5.3-9 gcc-4.6_4.6.2-1 gcc-4.6-base_4.6.2-1 gettext_0.18.1.1-5 gettext-base_0.18.1.1-5 gfortran_4:4.6.1-3 gfortran-4.6_4.6.2-1 gnupg_1.4.11-3 gpgv_1.4.11-3 grep_2.9-2 groff-base_1.21-6 gzip_1.4-1 hostname_3.06 html2text_1.3.2a-15 initscripts_2.88dsf-13.12 insserv_1.14.0-2.1 intltool-debian_0.35.0+20060710.1 libacl1_2.2.51-3 libattr1_1:2.4.46-3 libblas-dev_1.2.20110419-2 libblas3gf_1.2.20110419-2 libblkid1_2.19.1-5 libbz2-1.0_1.0.5-7 libbz2-dev_1.0.5-7 libc-bin_2.13-21 libc-dev-bin_2.13-21 libc6_2.13-21 libc6-dev_2.13-21 libcairo2_1.10.2-6.1 libcomerr2_1.42~WIP-2011-10-16-1 libcroco3_0.6.2-2 libdatrie1_0.2.4-3 libdb5.1_5.1.25-11 libdpkg-perl_1.16.1.1 libexpat1_2.0.1-7.1 libfontconfig1_2.8.0-3 libfreetype6_2.4.7-2 libgc1c2_1:7.1-8 libgcc1_1:4.6.2-1 libgdbm3_1.8.3-10 libgfortran3_4.6.2-1 libglib2.0-0_2.28.8-1 libgmp10_2:5.0.2+dfsg-2 libgomp1_4.6.2-1 libice6_2:1.0.7-2 libjpeg8_8c-2 libjpeg8-dev_8c-2 liblapack-dev_3.3.1-1 liblapack3gf_3.3.1-1 liblzma2_5.1.1alpha+20110809-2 liblzma5_5.1.1alpha+20110809-3 libmagic1_5.09-2 libmount1_2.19.1-5 libmpc2_0.9-4 libmpfr4_3.1.0-2 libncurses5_5.9-2 libncurses5-dev_5.9-2 libpam-modules_1.1.3-4 libpam-modules-bin_1.1.3-4 libpam-runtime_1.1.3-4 libpam0g_1.1.3-4 libpango1.0-0_1.29.4-2 libpaper-utils_1.1.24+nmu1 libpaper1_1.1.24+nmu1 libpcre3_8.12-4 libpcre3-dev_8.12-4 libpcrecpp0_8.12-4 libpipeline1_1.2.0-4 libpixman-1-0_0.23.8-1 libpng12-0_1.2.46-3 libpng12-dev_1.2.46-3 libreadline-dev_6.2-7 libreadline6_6.2-7 libreadline6-dev_6.2-7 libselinux1_2.1.0-1 libsepol1_2.1.0-1.1 libslang2_2.2.4-3 libsm6_2:1.2.0-2 libss2_1.42~WIP-2011-10-16-1 libstdc++6_4.6.2-1 libstdc++6-4.6-dev_4.6.2-1 libthai-data_0.1.15-2 libthai0_0.1.15-2 libtiff4_3.9.5-2 libtimedate-perl_1.2000-1 libtinfo-dev_5.9-2 libtinfo5_5.9-2 libunistring0_0.9.3-5 libusb-0.1-4_2:0.1.12-19 libuuid1_2.19.1-5 libx11-6_2:1.4.4-2 libx11-data_2:1.4.4-2 libxau6_1:1.0.6-3 libxcb-render0_1.7-3 libxcb-shm0_1.7-3 libxcb1_1.7-3 libxdmcp6_1:1.1.0-3 libxext6_2:1.3.0-3 libxft2_2.2.0-3 libxml2_2.7.8.dfsg-5 libxrender1_1:0.9.6-2 libxss1_1:1.2.1-2 libxt6_1:1.1.1-2 linux-libc-dev_3.0.0-5 login_1:4.1.4.2+svn3283-3 lsb-base_3.2-28 make_3.81-8.1 man-db_2.6.0.2-2 mawk_1.3.3-16 mount_2.19.1-5 multiarch-support_2.13-21 ncurses-base_5.9-2 ncurses-bin_5.9-2 passwd_1:4.1.4.2+svn3283-3 patch_2.6.1-2 perl_5.12.4-6 perl-base_5.12.4-6 perl-modules_5.12.4-6 po-debconf_1.0.16+nmu1 r-base-core_2.14.0-1 r-base-dev_2.14.0-1 readline-common_6.2-7 sed_4.2.1-9 sensible-utils_0.0.6 sudo_1.8.3-1 sysv-rc_2.88dsf-13.12 sysvinit_2.88dsf-13.12 sysvinit-utils_2.88dsf-13.12 tar_1.26-2 tcl8.5_8.5.10-1 tk8.5_8.5.10-1 ttf-dejavu-core_2.33-2 tzdata_2011m-1 ucf_3.0025+nmu2 unzip_6.0-5 util-linux_2.19.1-5 x11-common_1:7.6+9 xdg-utils_1.1.0~rc1-2 xz-utils_5.1.1alpha+20110809-3 zip_3.0-4 zlib1g_1:1.2.3.4.dfsg-3 zlib1g-dev_1:1.2.3.4.dfsg-3
┌──────────────────────────────────────────────────────────────────────────────┐
│ Build │
@@ -596,12 +587,12 @@ Unpack source
─────────────
gpgv: keyblock resource `/home/buildd/.gnupg/trustedkeys.gpg': file open error
-gpgv: Signature made Thu Aug 4 00:12:34 2011 UTC using RSA key ID 2295D502
+gpgv: Signature made Wed Nov 2 05:31:37 2011 UTC using RSA key ID 2295D502
gpgv: Can't check signature: public key not found
-dpkg-source: warning: failed to verify signature on ./r-bioc-biobase_2.12.2-1.dsc
-dpkg-source: info: extracting r-bioc-biobase in r-bioc-biobase-2.12.2
-dpkg-source: info: unpacking r-bioc-biobase_2.12.2.orig.tar.gz
-dpkg-source: info: applying r-bioc-biobase_2.12.2-1.diff.gz
+dpkg-source: warning: failed to verify signature on ./r-bioc-biobase_2.14.0-1.dsc
+dpkg-source: info: extracting r-bioc-biobase in r-bioc-biobase-2.14.0
+dpkg-source: info: unpacking r-bioc-biobase_2.14.0.orig.tar.gz
+dpkg-source: info: applying r-bioc-biobase_2.14.0-1.diff.gz
Check disc space
────────────────
@@ -610,14 +601,9 @@ Check disc space
dpkg-buildpackage
─────────────────
-dpkg-buildpackage: export CFLAGS from dpkg-buildflags (origin: vendor): -g -O2
-dpkg-buildpackage: export CPPFLAGS from dpkg-buildflags (origin: vendor):
-dpkg-buildpackage: export CXXFLAGS from dpkg-buildflags (origin: vendor): -g -O2
-dpkg-buildpackage: export FFLAGS from dpkg-buildflags (origin: vendor): -g -O2
-dpkg-buildpackage: export LDFLAGS from dpkg-buildflags (origin: vendor):
dpkg-buildpackage: source package r-bioc-biobase
-dpkg-buildpackage: source version 2.12.2-1
- dpkg-source --before-build r-bioc-biobase-2.12.2
+dpkg-buildpackage: source version 2.14.0-1
+ dpkg-source --before-build r-bioc-biobase-2.14.0
dpkg-buildpackage: host architecture armel
fakeroot debian/rules clean
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
@@ -625,9 +611,9 @@ test -x debian/rules
dh_testroot
/usr/bin/make -f debian/rules reverse-config
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
-make[1]: Entering directory `/build/buildd-r-bioc-biobase_2.12.2-1-armel-jAvSki/r-bioc-biobase-2.12.2'
+make[1]: Entering directory `/build/buildd-r-bioc-biobase_2.14.0-1-armel-FABdc4/r-bioc-biobase-2.14.0'
make[1]: Nothing to be done for `reverse-config'.
-make[1]: Leaving directory `/build/buildd-r-bioc-biobase_2.12.2-1-armel-jAvSki/r-bioc-biobase-2.12.2'
+make[1]: Leaving directory `/build/buildd-r-bioc-biobase_2.14.0-1-armel-FABdc4/r-bioc-biobase-2.14.0'
if [ "reverse-patches" = "reverse-patches" ]; then rm -f debian/stamp-patched; fi
patches:
if [ "reverse-patches" != "reverse-patches" ]; then touch debian/stamp-patched; fi
@@ -647,21 +633,22 @@ rm -f config.log config.status
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
test -x debian/rules
mkdir -p "."
+/usr/share/cdbs/1/rules/buildcore.mk:109: WARNING: DEB_DH_BUILDDEB_ARGS is a deprecated variable
/usr/bin/make -f debian/rules reverse-config
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
-make[1]: Entering directory `/build/buildd-r-bioc-biobase_2.12.2-1-armel-jAvSki/r-bioc-biobase-2.12.2'
+make[1]: Entering directory `/build/buildd-r-bioc-biobase_2.14.0-1-armel-FABdc4/r-bioc-biobase-2.14.0'
make[1]: Nothing to be done for `reverse-config'.
-make[1]: Leaving directory `/build/buildd-r-bioc-biobase_2.12.2-1-armel-jAvSki/r-bioc-biobase-2.12.2'
+make[1]: Leaving directory `/build/buildd-r-bioc-biobase_2.14.0-1-armel-FABdc4/r-bioc-biobase-2.14.0'
if [ "debian/stamp-patched" = "reverse-patches" ]; then rm -f debian/stamp-patched; fi
patches:
if [ "debian/stamp-patched" != "reverse-patches" ]; then touch debian/stamp-patched; fi
if [ "debian/stamp-patched" != "reverse-patches" ] ; then \
/usr/bin/make -f debian/rules update-config ; \
fi
-make[1]: Entering directory `/build/buildd-r-bioc-biobase_2.12.2-1-armel-jAvSki/r-bioc-biobase-2.12.2'
+make[1]: Entering directory `/build/buildd-r-bioc-biobase_2.14.0-1-armel-FABdc4/r-bioc-biobase-2.14.0'
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
make[1]: Nothing to be done for `update-config'.
-make[1]: Leaving directory `/build/buildd-r-bioc-biobase_2.12.2-1-armel-jAvSki/r-bioc-biobase-2.12.2'
+make[1]: Leaving directory `/build/buildd-r-bioc-biobase_2.14.0-1-armel-FABdc4/r-bioc-biobase-2.14.0'
fakeroot debian/rules binary-arch
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
test -x debian/rules
@@ -669,29 +656,30 @@ dh_testroot
dh_prep
dh_installdirs -A
mkdir -p "."
+/usr/share/cdbs/1/rules/buildcore.mk:109: WARNING: DEB_DH_BUILDDEB_ARGS is a deprecated variable
dh_installdirs usr/lib/R/site-library
if test -f /usr/bin/xvfb-run; then \
xvfb-run -a \
- R CMD INSTALL -l /build/buildd-r-bioc-biobase_2.12.2-1-armel-jAvSki/r-bioc-biobase-2.12.2/debian/r-bioc-biobase/usr/lib/R/site-library --clean \
+ R CMD INSTALL -l /build/buildd-r-bioc-biobase_2.14.0-1-armel-FABdc4/r-bioc-biobase-2.14.0/debian/r-bioc-biobase/usr/lib/R/site-library --clean \
. ; \
else \
- R CMD INSTALL -l /build/buildd-r-bioc-biobase_2.12.2-1-armel-jAvSki/r-bioc-biobase-2.12.2/debian/r-bioc-biobase/usr/lib/R/site-library \
+ R CMD INSTALL -l /build/buildd-r-bioc-biobase_2.14.0-1-armel-FABdc4/r-bioc-biobase-2.14.0/debian/r-bioc-biobase/usr/lib/R/site-library \
--clean . ;\
fi
* installing *source* package 'Biobase' ...
** libs
-make[1]: Entering directory `/build/buildd-r-bioc-biobase_2.12.2-1-armel-jAvSki/r-bioc-biobase-2.12.2/src'
-gcc -I/usr/share/R/include -fpic -std=gnu99 -O3 -pipe -g -c Rinit.c -o Rinit.o
-gcc -I/usr/share/R/include -fpic -std=gnu99 -O3 -pipe -g -c anyMissing.c -o anyMissing.o
-gcc -I/usr/share/R/include -fpic -std=gnu99 -O3 -pipe -g -c envir.c -o envir.o
-gcc -I/usr/share/R/include -fpic -std=gnu99 -O3 -pipe -g -c matchpt.c -o matchpt.o
-gcc -I/usr/share/R/include -fpic -std=gnu99 -O3 -pipe -g -c rowMedians.c -o rowMedians.o
-gcc -I/usr/share/R/include -fpic -std=gnu99 -O3 -pipe -g -c sublist_extract.c -o sublist_extract.o
-gcc -shared -o Biobase.so Rinit.o anyMissing.o envir.o matchpt.o rowMedians.o sublist_extract.o -L/usr/lib/R/lib -lR
-make[1]: Leaving directory `/build/buildd-r-bioc-biobase_2.12.2-1-armel-jAvSki/r-bioc-biobase-2.12.2/src'
-make[1]: Entering directory `/build/buildd-r-bioc-biobase_2.12.2-1-armel-jAvSki/r-bioc-biobase-2.12.2/src'
-make[1]: Leaving directory `/build/buildd-r-bioc-biobase_2.12.2-1-armel-jAvSki/r-bioc-biobase-2.12.2/src'
-installing to /build/buildd-r-bioc-biobase_2.12.2-1-armel-jAvSki/r-bioc-biobase-2.12.2/debian/r-bioc-biobase/usr/lib/R/site-library/Biobase/libs
+make[1]: Entering directory `/build/buildd-r-bioc-biobase_2.14.0-1-armel-FABdc4/r-bioc-biobase-2.14.0/src'
+gcc -std=gnu99 -I/usr/share/R/include -fpic -O3 -pipe -g -c Rinit.c -o Rinit.o
+gcc -std=gnu99 -I/usr/share/R/include -fpic -O3 -pipe -g -c anyMissing.c -o anyMissing.o
+gcc -std=gnu99 -I/usr/share/R/include -fpic -O3 -pipe -g -c envir.c -o envir.o
+gcc -std=gnu99 -I/usr/share/R/include -fpic -O3 -pipe -g -c matchpt.c -o matchpt.o
+gcc -std=gnu99 -I/usr/share/R/include -fpic -O3 -pipe -g -c rowMedians.c -o rowMedians.o
+gcc -std=gnu99 -I/usr/share/R/include -fpic -O3 -pipe -g -c sublist_extract.c -o sublist_extract.o
+gcc -std=gnu99 -shared -o Biobase.so Rinit.o anyMissing.o envir.o matchpt.o rowMedians.o sublist_extract.o -L/usr/lib/R/lib -lR
+make[1]: Leaving directory `/build/buildd-r-bioc-biobase_2.14.0-1-armel-FABdc4/r-bioc-biobase-2.14.0/src'
+make[1]: Entering directory `/build/buildd-r-bioc-biobase_2.14.0-1-armel-FABdc4/r-bioc-biobase-2.14.0/src'
+make[1]: Leaving directory `/build/buildd-r-bioc-biobase_2.14.0-1-armel-FABdc4/r-bioc-biobase-2.14.0/src'
+installing to /build/buildd-r-bioc-biobase_2.14.0-1-armel-FABdc4/r-bioc-biobase-2.14.0/debian/r-bioc-biobase/usr/lib/R/site-library/Biobase/libs
** R
** data
** inst
@@ -699,20 +687,27 @@ installing to /build/buildd-r-bioc-biobase_2.12.2-1-armel-jAvSki/r-bioc-biobase-
** help
*** installing help indices
** building package indices ...
+*** tangling vignette sources ...
+ 'BiobaseDevelopment.Rnw'
+ 'Bioconductor.Rnw'
+ 'ExpressionSetIntroduction.Rnw'
+ 'HowTo.Rnw'
+ 'Qviews.Rnw'
+ 'esApply.Rnw'
** testing if installed package can be loaded
* DONE (Biobase)
-rm -vf /build/buildd-r-bioc-biobase_2.12.2-1-armel-jAvSki/r-bioc-biobase-2.12.2/debian/r-bioc-biobase/usr/lib/R/site-library/R.css \
- /build/buildd-r-bioc-biobase_2.12.2-1-armel-jAvSki/r-bioc-biobase-2.12.2/debian/r-bioc-biobase/usr/lib/R/site-library/Biobase/COPYING \
- /build/buildd-r-bioc-biobase_2.12.2-1-armel-jAvSki/r-bioc-biobase-2.12.2/debian/r-bioc-biobase/usr/lib/R/site-library/Biobase/LICENSE.txt
+rm -vf /build/buildd-r-bioc-biobase_2.14.0-1-armel-FABdc4/r-bioc-biobase-2.14.0/debian/r-bioc-biobase/usr/lib/R/site-library/R.css \
+ /build/buildd-r-bioc-biobase_2.14.0-1-armel-FABdc4/r-bioc-biobase-2.14.0/debian/r-bioc-biobase/usr/lib/R/site-library/Biobase/COPYING \
+ /build/buildd-r-bioc-biobase_2.14.0-1-armel-FABdc4/r-bioc-biobase-2.14.0/debian/r-bioc-biobase/usr/lib/R/site-library/Biobase/LICENSE.txt
if test -f debian/overrides; then \
- install -d /build/buildd-r-bioc-biobase_2.12.2-1-armel-jAvSki/r-bioc-biobase-2.12.2/debian/r-bioc-biobase/usr/share/lintian/overrides ; \
+ install -d /build/buildd-r-bioc-biobase_2.14.0-1-armel-FABdc4/r-bioc-biobase-2.14.0/debian/r-bioc-biobase/usr/share/lintian/overrides ; \
install -m 0644 debian/overrides \
- /build/buildd-r-bioc-biobase_2.12.2-1-armel-jAvSki/r-bioc-biobase-2.12.2/debian/r-bioc-biobase/usr/share/lintian/overrides/r-bioc-biobase; \
+ /build/buildd-r-bioc-biobase_2.14.0-1-armel-FABdc4/r-bioc-biobase-2.14.0/debian/r-bioc-biobase/usr/share/lintian/overrides/r-bioc-biobase; \
fi
Adding cdbs dependencies to debian/r-bioc-biobase.substvars
dh_installdirs -pr-bioc-biobase
-echo "R:Depends=r-base-core (>= 2.13.1~)" >> debian/r-bioc-biobase.substvars
+echo "R:Depends=r-base-core (>= 2.14.0~)" >> debian/r-bioc-biobase.substvars
dh_installdocs -pr-bioc-biobase ./NEWS
dh_installexamples -pr-bioc-biobase
dh_installman -pr-bioc-biobase
@@ -743,23 +738,23 @@ dh_perl -pr-bioc-biobase
dh_shlibdeps -pr-bioc-biobase
dh_gencontrol -pr-bioc-biobase
dh_md5sums -pr-bioc-biobase
-dh_builddeb -pr-bioc-biobase
-dpkg-deb: building package `r-bioc-biobase' in `../r-bioc-biobase_2.12.2-1_armel.deb'.
- dpkg-genchanges -B -marmel Build Daemon (arnold) <buildd_armel-arnold at buildd.debian.org> >../r-bioc-biobase_2.12.2-1_armel.changes
+dh_builddeb -pr-bioc-biobase -- -Z xz
+dpkg-deb: building package `r-bioc-biobase' in `../r-bioc-biobase_2.14.0-1_armel.deb'.
+ dpkg-genchanges -B -marmel Build Daemon (arnold) <buildd_armel-arnold at buildd.debian.org> >../r-bioc-biobase_2.14.0-1_armel.changes
dpkg-genchanges: arch-specific upload - not including arch-independent packages
dpkg-genchanges: binary-only upload - not including any source code
- dpkg-source --after-build r-bioc-biobase-2.12.2
+ dpkg-source --after-build r-bioc-biobase-2.14.0
dpkg-buildpackage: binary only upload (no source included)
────────────────────────────────────────────────────────────────────────────────
-Build finished at 20110804-0034
+Build finished at 20111102-0607
-r-bioc-biobase_2.12.2-1_armel.changes:
+r-bioc-biobase_2.14.0-1_armel.changes:
Format: 1.8
-Date: Thu, 04 Aug 2011 08:58:03 +0900
+Date: Wed, 02 Nov 2011 13:52:04 +0900
Source: r-bioc-biobase
Binary: r-bioc-biobase
Architecture: armel
-Version: 2.12.2-1
+Version: 2.14.0-1
Distribution: sid
Urgency: low
Maintainer: armel Build Daemon (arnold) <buildd_armel-arnold at buildd.debian.org>
@@ -767,34 +762,38 @@ Changed-By: Charles Plessy <plessy at debian.org>
Description:
r-bioc-biobase - base functions for Bioconductor
Changes:
- r-bioc-biobase (2.12.2-1) unstable; urgency=low
+ r-bioc-biobase (2.14.0-1) unstable; urgency=low
.
- * New upstream release.
+ [cb6b786] Bioconductor release 2.9.
+ [d70e490] Build-Depend on R >= 2.10 according to DESCRIPTION.
+ [ae99e35] Include 7 digits of the commit id in the changelog entry.
+ [33b5d47] Compress binary package with xz.
Checksums-Sha1:
- fc3e344309caec2cc61d212580f297fb731878be 2669778 r-bioc-biobase_2.12.2-1_armel.deb
+ 8c3277da0871797f45562de96fe14153652afa69 2314996 r-bioc-biobase_2.14.0-1_armel.deb
Checksums-Sha256:
- 39dd2ba9c4ae5f2f5e31cfd34ac958b2713dc4b1ce32b4789371e748efb0632e 2669778 r-bioc-biobase_2.12.2-1_armel.deb
+ fe62ac8007f6906518acc23fb631cd4ad4617110656cc7207a6433872321a609 2314996 r-bioc-biobase_2.14.0-1_armel.deb
Files:
- 6acf512b73174fa7004f5ff45586d130 2669778 gnu-r optional r-bioc-biobase_2.12.2-1_armel.deb
+ aaee7b682f8eb2736ecd8da0b48725c5 2314996 gnu-r optional r-bioc-biobase_2.14.0-1_armel.deb
┌──────────────────────────────────────────────────────────────────────────────┐
│ Package contents │
└──────────────────────────────────────────────────────────────────────────────┘
-r-bioc-biobase_2.12.2-1_armel.deb
+r-bioc-biobase_2.14.0-1_armel.deb
─────────────────────────────────
new debian package, version 2.0.
- size 2669778 bytes: control archive= 4939 bytes.
- 1187 bytes, 25 lines control
+ size 2314996 bytes: control archive= 4948 bytes.
+ 1217 bytes, 26 lines control
13314 bytes, 141 lines md5sums
Package: r-bioc-biobase
- Version: 2.12.2-1
+ Version: 2.14.0-1
Architecture: armel
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
- Installed-Size: 3796
- Depends: libc6 (>= 2.4), r-base-core (>= 2.13.1~)
+ Installed-Size: 3067
+ Pre-Depends: dpkg (>= 1.15.6)
+ Depends: libc6 (>= 2.4), r-base-core (>= 2.14.0~)
Section: gnu-r
Priority: optional
Homepage: http://www.bioconductor.org
@@ -815,177 +814,177 @@ r-bioc-biobase_2.12.2-1_armel.deb
unofficial auto-generated Bioconductor packages for Debian and Ubuntu systems,
that are prepared by members of the Debian Med team.
-drwxr-xr-x root/root 0 2011-08-04 00:33 ./
-drwxr-xr-x root/root 0 2011-08-04 00:33 ./usr/
-drwxr-xr-x root/root 0 2011-08-04 00:32 ./usr/lib/
-drwxr-xr-x root/root 0 2011-08-04 00:32 ./usr/lib/R/
-drwxr-xr-x root/root 0 2011-08-04 00:33 ./usr/lib/R/site-library/
-drwxr-xr-x root/root 0 2011-08-04 00:33 ./usr/lib/R/site-library/Biobase/
--rw-r--r-- root/root 516 2011-08-04 00:32 ./usr/lib/R/site-library/Biobase/testClass.R
--rw-r--r-- root/root 650 2011-08-04 00:32 ./usr/lib/R/site-library/Biobase/CITATION
--rw-r--r-- root/root 3988 2011-08-04 00:32 ./usr/lib/R/site-library/Biobase/NEWS
-drwxr-xr-x root/root 0 2011-08-04 00:34 ./usr/lib/R/site-library/Biobase/libs/
--rw-r--r-- root/root 19392 2011-08-04 00:34 ./usr/lib/R/site-library/Biobase/libs/Biobase.so
--rw-r--r-- root/root 1267 2011-08-04 00:32 ./usr/lib/R/site-library/Biobase/DESCRIPTION
-drwxr-xr-x root/root 0 2011-08-04 00:32 ./usr/lib/R/site-library/Biobase/UnitTests/
--rw-r--r-- root/root 951 2011-08-04 00:32 ./usr/lib/R/site-library/Biobase/UnitTests/cache_test.R
--rw-r--r-- root/root 2522 2011-08-04 00:32 ./usr/lib/R/site-library/Biobase/UnitTests/combine_test.R
--rw-r--r-- root/root 8167 2011-08-04 00:32 ./usr/lib/R/site-library/Biobase/UnitTests/UpdateObject_test.R
--rw-r--r-- root/root 1515 2011-08-04 00:32 ./usr/lib/R/site-library/Biobase/UnitTests/matrix_test.R
--rw-r--r-- root/root 180 2011-08-04 00:32 ./usr/lib/R/site-library/Biobase/UnitTests/checkClass_test.R
--rw-r--r-- root/root 403 2011-08-04 00:32 ./usr/lib/R/site-library/Biobase/UnitTests/copyEnv_test.R
--rw-r--r-- root/root 2096 2011-08-04 00:32 ./usr/lib/R/site-library/Biobase/UnitTests/esApply_test.R
--rw-r--r-- root/root 5015 2011-08-04 00:32 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_test.R
--rw-r--r-- root/root 6194 2011-08-04 00:32 ./usr/lib/R/site-library/Biobase/UnitTests/ExpressionSet_test.R
-drwxr-xr-x root/root 0 2011-08-04 00:32 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/
-drwxr-xr-x root/root 0 2011-08-04 00:32 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/
--rw-r--r-- root/root 167662 2011-08-04 00:32 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/golubMergeSub.rda
--rw-r--r-- root/root 25005 2011-08-04 00:32 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/sample.eSet.rda
--rw-r--r-- root/root 1016 2011-08-04 00:32 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/AnnotatedDataFrame.Rda
--rw-r--r-- root/root 112 2011-08-04 00:32 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/VersionsNull.Rda
--rw-r--r-- root/root 76485 2011-08-04 00:32 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/bbsym.rda
--rw-r--r-- root/root 183 2011-08-04 00:32 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/VersionedBiobase.Rda
--rw-r--r-- root/root 1166 2011-08-04 00:32 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/MultiSet.Rda
--rw-r--r-- root/root 4704 2011-08-04 00:32 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/exprSet.Rda
--rw-r--r-- root/root 92336 2011-08-04 00:32 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/sample.exprSet.rda
--rw-r--r-- root/root 62201 2011-08-04 00:32 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/eset.rda
--rw-r--r-- root/root 143 2011-08-04 00:32 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/Versioned.Rda
--rw-r--r-- root/root 95238 2011-08-04 00:32 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/swrep.rda
--rw-r--r-- root/root 802 2011-08-04 00:32 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/NChannelSet.Rda
--rw-r--r-- root/root 795 2011-08-04 00:32 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/MIAME.Rda
--rw-r--r-- root/root 146 2011-08-04 00:32 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/container.Rda
--rw-r--r-- root/root 5537 2011-08-04 00:32 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/ExpressionSet.Rda
--rw-r--r-- root/root 1235 2011-08-04 00:32 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/SnpSet.Rda
--rw-r--r-- root/root 113 2011-08-04 00:32 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/ScalarCharacter.Rda
--rw-r--r-- root/root 105 2011-08-04 00:32 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/Versions.Rda
--rw-r--r-- root/root 231 2011-08-04 00:32 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/aggregator.Rda
--rw-r--r-- root/root 62219 2011-08-04 00:32 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/sample.exprSet.1.rda
--rw-r--r-- root/root 524 2011-08-04 00:32 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/SWPD.rda
-drwxr-xr-x root/root 0 2011-08-04 00:32 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/1.8/
--rw-r--r-- root/root 939 2011-08-04 00:32 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/1.8/AnnotatedDataFrame.Rda
--rw-r--r-- root/root 4588 2011-08-04 00:32 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/1.8/exprSet.Rda
--rw-r--r-- root/root 943 2011-08-04 00:32 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/1.8/phenoData.Rda
--rw-r--r-- root/root 741 2011-08-04 00:32 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/1.8/MIAME.Rda
--rw-r--r-- root/root 4678 2011-08-04 00:32 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/1.8/ExpressionSet.Rda
-drwxr-xr-x root/root 0 2011-08-04 00:32 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/2.0/
--rw-r--r-- root/root 1014 2011-08-04 00:32 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/2.0/AnnotatedDataFrame.Rda
--rw-r--r-- root/root 110 2011-08-04 00:32 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/2.0/VersionsNull.Rda
--rw-r--r-- root/root 183 2011-08-04 00:32 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/2.0/VersionedBiobase.Rda
--rw-r--r-- root/root 555 2011-08-04 00:32 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/2.0/MultiSet.Rda
--rw-r--r-- root/root 4705 2011-08-04 00:32 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/2.0/exprSet.Rda
--rw-r--r-- root/root 998 2011-08-04 00:32 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/2.0/phenoData.Rda
--rw-r--r-- root/root 143 2011-08-04 00:32 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/2.0/Versioned.Rda
--rw-r--r-- root/root 795 2011-08-04 00:32 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/2.0/MIAME.Rda
--rw-r--r-- root/root 146 2011-08-04 00:32 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/2.0/container.Rda
--rw-r--r-- root/root 4822 2011-08-04 00:32 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/2.0/ExpressionSet.Rda
--rw-r--r-- root/root 609 2011-08-04 00:32 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/2.0/SnpSet.Rda
--rw-r--r-- root/root 113 2011-08-04 00:32 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/2.0/ScalarCharacter.Rda
--rw-r--r-- root/root 105 2011-08-04 00:32 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/2.0/Versions.Rda
--rw-r--r-- root/root 227 2011-08-04 00:32 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/2.0/aggregator.Rda
-drwxr-xr-x root/root 0 2011-08-04 00:32 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/raw/
--rw-r--r-- root/root 423 2011-08-04 00:32 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/raw/varMetadata.tab
--rw-r--r-- root/root 705 2011-08-04 00:32 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/raw/pData.tab
--rw-r--r-- root/root 6194 2011-08-04 00:32 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/raw/exprs.tab
--rw-r--r-- root/root 20153 2011-08-04 00:32 ./usr/lib/R/site-library/Biobase/UnitTests/EsetSubclasses_test.R
--rw-r--r-- root/root 1907 2011-08-04 00:32 ./usr/lib/R/site-library/Biobase/UnitTests/subListExtract_test.R
--rw-r--r-- root/root 8317 2011-08-04 00:32 ./usr/lib/R/site-library/Biobase/UnitTests/NChannelSet_test.R
--rw-r--r-- root/root 4598 2011-08-04 00:32 ./usr/lib/R/site-library/Biobase/UnitTests/data.frame_test.R
--rw-r--r-- root/root 1257 2011-08-04 00:32 ./usr/lib/R/site-library/Biobase/UnitTests/utilities.R
--rw-r--r-- root/root 2040 2011-08-04 00:32 ./usr/lib/R/site-library/Biobase/UnitTests/unsaveSetSlot_test.R
--rw-r--r-- root/root 10497 2011-08-04 00:32 ./usr/lib/R/site-library/Biobase/UnitTests/AnnotatedDataFrame_test.R
--rw-r--r-- root/root 629 2011-08-04 00:32 ./usr/lib/R/site-library/Biobase/UnitTests/DataClasses_test.R
--rw-r--r-- root/root 580 2011-08-04 00:32 ./usr/lib/R/site-library/Biobase/UnitTests/SnpSet_test.R
--rw-r--r-- root/root 477 2011-08-04 00:32 ./usr/lib/R/site-library/Biobase/UnitTests/runalltests.R
--rwxr-xr-x root/root 39 2011-08-04 00:32 ./usr/lib/R/site-library/Biobase/UnitTests/runall.sh
--rw-r--r-- root/root 2035 2011-08-04 00:32 ./usr/lib/R/site-library/Biobase/UnitTests/AssayData_test.R
--rw-r--r-- root/root 286 2011-08-04 00:32 ./usr/lib/R/site-library/Biobase/UnitTests/Makefile
--rwxr-xr-x root/root 213 2011-08-04 00:32 ./usr/lib/R/site-library/Biobase/UnitTests/runfile.sh
--rw-r--r-- root/root 2870 2011-08-04 00:32 ./usr/lib/R/site-library/Biobase/NAMESPACE
-drwxr-xr-x root/root 0 2011-08-04 00:33 ./usr/lib/R/site-library/Biobase/help/
--rw-r--r-- root/root 3321 2011-08-04 00:33 ./usr/lib/R/site-library/Biobase/help/aliases.rds
--rw-r--r-- root/root 1993 2011-08-04 00:33 ./usr/lib/R/site-library/Biobase/help/Biobase.rdx
--rw-r--r-- root/root 242095 2011-08-04 00:33 ./usr/lib/R/site-library/Biobase/help/Biobase.rdb
--rw-r--r-- root/root 853 2011-08-04 00:33 ./usr/lib/R/site-library/Biobase/help/paths.rds
--rw-r--r-- root/root 14396 2011-08-04 00:33 ./usr/lib/R/site-library/Biobase/help/AnIndex
-drwxr-xr-x root/root 0 2011-08-04 00:33 ./usr/lib/R/site-library/Biobase/doc/
--rw-r--r-- root/root 3987 2011-08-04 00:33 ./usr/lib/R/site-library/Biobase/doc/Qviews.R
--rw-r--r-- root/root 3048 2011-08-04 00:32 ./usr/lib/R/site-library/Biobase/doc/HowTo.Rnw
--rw-r--r-- root/root 6656 2011-08-04 00:33 ./usr/lib/R/site-library/Biobase/doc/ExpressionSetIntroduction.R
--rw-r--r-- root/root 1591 2011-08-04 00:33 ./usr/lib/R/site-library/Biobase/doc/esApply.R
--rw-r--r-- root/root 206 2011-08-04 00:33 ./usr/lib/R/site-library/Biobase/doc/HowTo.R
--rw-r--r-- root/root 5030 2011-08-04 00:32 ./usr/lib/R/site-library/Biobase/doc/Qviews.Rnw
--rw-r--r-- root/root 18067 2011-08-04 00:32 ./usr/lib/R/site-library/Biobase/doc/ExpressionSetIntroduction.Rnw
--rw-r--r-- root/root 60322 2011-08-04 00:32 ./usr/lib/R/site-library/Biobase/doc/HowTo.pdf
--rw-r--r-- root/root 8004 2011-08-04 00:33 ./usr/lib/R/site-library/Biobase/doc/BiobaseDevelopment.R
--rw-r--r-- root/root 110288 2011-08-04 00:32 ./usr/lib/R/site-library/Biobase/doc/esApply.pdf
--rw-r--r-- root/root 267601 2011-08-04 00:32 ./usr/lib/R/site-library/Biobase/doc/BiobaseDevelopment.pdf
--rw-r--r-- root/root 220 2011-08-04 00:33 ./usr/lib/R/site-library/Biobase/doc/Bioconductor.R
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+-rw-r--r-- root/root 3727 2011-11-02 06:06 ./usr/lib/R/site-library/Biobase/doc/esApply.Rnw
+-rw-r--r-- root/root 3428 2011-11-02 06:06 ./usr/lib/R/site-library/Biobase/doc/index.html
+drwxr-xr-x root/root 0 2011-11-02 06:06 ./usr/lib/R/site-library/Biobase/Code/
+drwxr-xr-x root/root 0 2011-11-02 06:06 ./usr/lib/R/site-library/Biobase/Code/man/
+-rw-r--r-- root/root 350 2011-11-02 06:06 ./usr/lib/R/site-library/Biobase/Code/man/get at PKGNAME@.Rd
+-rw-r--r-- root/root 487 2011-11-02 06:06 ./usr/lib/R/site-library/Biobase/Code/man/@PKGNAME at .Rd
+-rw-r--r-- root/root 201 2011-11-02 06:06 ./usr/lib/R/site-library/Biobase/Code/DESCRIPTION
+drwxr-xr-x root/root 0 2011-11-02 06:06 ./usr/lib/R/site-library/Biobase/Code/R/
+-rw-r--r-- root/root 91 2011-11-02 06:06 ./usr/lib/R/site-library/Biobase/Code/R/get at PKGNAME@.R
+drwxr-xr-x root/root 0 2011-11-02 06:06 ./usr/lib/R/site-library/Biobase/R/
+-rw-r--r-- root/root 383 2011-11-02 06:06 ./usr/lib/R/site-library/Biobase/R/Biobase
+-rw-r--r-- root/root 9348 2011-11-02 06:06 ./usr/lib/R/site-library/Biobase/R/Biobase.rdx
+-rw-r--r-- root/root 438864 2011-11-02 06:06 ./usr/lib/R/site-library/Biobase/R/Biobase.rdb
+drwxr-xr-x root/root 0 2011-11-02 06:06 ./usr/lib/R/site-library/Biobase/html/
+-rw-r--r-- root/root 53325 2011-11-02 06:06 ./usr/lib/R/site-library/Biobase/html/00Index.html
+-rw-r--r-- root/root 1179 2011-11-02 06:06 ./usr/lib/R/site-library/Biobase/html/R.css
+drwxr-xr-x root/root 0 2011-11-02 06:06 ./usr/lib/R/site-library/Biobase/scripts/
+-rw-r--r-- root/root 1122 2011-11-02 06:06 ./usr/lib/R/site-library/Biobase/scripts/getBioCPkgNames.R
+-rw-r--r-- root/root 5365 2011-11-02 06:06 ./usr/lib/R/site-library/Biobase/scripts/getBioC.R
+-rw-r--r-- root/root 2008 2011-11-02 06:06 ./usr/lib/R/site-library/Biobase/scripts/makeExpressionSetPackage.R
+-rw-r--r-- root/root 6808 2011-11-02 06:06 ./usr/lib/R/site-library/Biobase/scripts/query.packages.R
+-rw-r--r-- root/root 774 2011-11-02 06:06 ./usr/lib/R/site-library/Biobase/scripts/esetTesting.R
+-rw-r--r-- root/root 1213 2011-11-02 06:06 ./usr/lib/R/site-library/Biobase/scripts/getBioCHelp
+drwxr-xr-x root/root 0 2011-11-02 06:06 ./usr/lib/R/site-library/Biobase/Meta/
+-rw-r--r-- root/root 475 2011-11-02 06:06 ./usr/lib/R/site-library/Biobase/Meta/vignette.rds
+-rw-r--r-- root/root 5810 2011-11-02 06:06 ./usr/lib/R/site-library/Biobase/Meta/hsearch.rds
+-rw-r--r-- root/root 1002 2011-11-02 06:05 ./usr/lib/R/site-library/Biobase/Meta/package.rds
+-rw-r--r-- root/root 323 2011-11-02 06:06 ./usr/lib/R/site-library/Biobase/Meta/data.rds
+-rw-r--r-- root/root 1445 2011-11-02 06:06 ./usr/lib/R/site-library/Biobase/Meta/nsInfo.rds
+-rw-r--r-- root/root 5798 2011-11-02 06:06 ./usr/lib/R/site-library/Biobase/Meta/Rd.rds
+-rw-r--r-- root/root 3554 2011-11-02 06:06 ./usr/lib/R/site-library/Biobase/Meta/links.rds
+drwxr-xr-x root/root 0 2011-11-02 06:06 ./usr/lib/R/site-library/Biobase/extdata/
+-rw-r--r-- root/root 109039 2011-11-02 06:06 ./usr/lib/R/site-library/Biobase/extdata/exprsData.txt
+-rw-r--r-- root/root 715 2011-11-02 06:06 ./usr/lib/R/site-library/Biobase/extdata/pData.txt
+drwxr-xr-x root/root 0 2011-11-02 06:06 ./usr/lib/R/site-library/Biobase/ExpressionSet/
+drwxr-xr-x root/root 0 2011-11-02 06:06 ./usr/lib/R/site-library/Biobase/ExpressionSet/man/
+-rw-r--r-- root/root 180 2011-11-02 06:06 ./usr/lib/R/site-library/Biobase/ExpressionSet/man/@PKGNAME at .Rd
+-rw-r--r-- root/root 212 2011-11-02 06:06 ./usr/lib/R/site-library/Biobase/ExpressionSet/DESCRIPTION
+-rw-r--r-- root/root 6718 2011-11-02 06:06 ./usr/lib/R/site-library/Biobase/INDEX
+drwxr-xr-x root/root 0 2011-11-02 06:06 ./usr/lib/R/site-library/Biobase/data/
+-rw-r--r-- root/root 18025 2011-11-02 06:06 ./usr/lib/R/site-library/Biobase/data/seD.rda
+-rw-r--r-- root/root 125627 2011-11-02 06:06 ./usr/lib/R/site-library/Biobase/data/geneData.R
+-rw-r--r-- root/root 107 2011-11-02 06:06 ./usr/lib/R/site-library/Biobase/data/sample.eSet.R
+-rw-r--r-- root/root 73240 2011-11-02 06:06 ./usr/lib/R/site-library/Biobase/data/sample.ExpressionSet.rda
+-rw-r--r-- root/root 117 2011-11-02 06:06 ./usr/lib/R/site-library/Biobase/data/sample.exprSet.1.R
+-rw-r--r-- root/root 1556 2011-11-02 06:06 ./usr/lib/R/site-library/Biobase/data/aaMap.R
+-rw-r--r-- root/root 2032 2011-11-02 06:06 ./usr/lib/R/site-library/Biobase/data/reporter.rda
+-rw-r--r-- root/root 501 2011-11-02 06:06 ./usr/lib/R/site-library/Biobase/data/geneCov.R
+-rw-r--r-- root/root 115 2011-11-02 06:06 ./usr/lib/R/site-library/Biobase/data/sample.exprSet.R
+-rw-r--r-- root/root 19920 2011-11-02 06:06 ./usr/lib/R/site-library/Biobase/data/sample.MultiSet.rda
+-rw-r--r-- root/root 267752 2011-11-02 06:06 ./usr/lib/R/site-library/Biobase/data/SW.rda
+-rw-r--r-- root/root 435 2011-11-02 06:06 ./usr/lib/R/site-library/Biobase/data/geneCovariate.rda
+drwxr-xr-x root/root 0 2011-11-02 06:06 ./usr/share/
+drwxr-xr-x root/root 0 2011-11-02 06:06 ./usr/share/doc/
+drwxr-xr-x root/root 0 2011-11-02 06:07 ./usr/share/doc/r-bioc-biobase/
+-rw-r--r-- root/root 1380 2011-10-31 23:32 ./usr/share/doc/r-bioc-biobase/NEWS.gz
+-rw-r--r-- root/root 380 2011-11-02 06:05 ./usr/share/doc/r-bioc-biobase/changelog.Debian.gz
+-rw-r--r-- root/root 392 2011-11-02 06:05 ./usr/share/doc/r-bioc-biobase/README.Debian
+-rw-r--r-- root/root 10574 2011-11-02 06:05 ./usr/share/doc/r-bioc-biobase/copyright
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -999,7 +998,7 @@ Built successfully
│ Post Build │
└──────────────────────────────────────────────────────────────────────────────┘
-Purging /var/lib/schroot/mount/sid-armel-sbuild-082890dc-cc35-4d54-be5c-4b9bcfaeddb8/build/buildd-r-bioc-biobase_2.12.2-1-armel-jAvSki
+Purging /var/lib/schroot/mount/sid-armel-sbuild-9bd24989-b79b-44ca-af36-88948f702017/build/buildd-r-bioc-biobase_2.14.0-1-armel-FABdc4
Not cleaning session: cloned chroot in use
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -1007,19 +1006,19 @@ Not cleaning session: cloned chroot in use
└──────────────────────────────────────────────────────────────────────────────┘
Architecture: armel
-Build-Space: 10092
-Build-Time: 152
+Build-Space: 9140
+Build-Time: 143
Distribution: sid
-Install-Time: 295
-Job: r-bioc-biobase_2.12.2-1
+Install-Time: 294
+Job: r-bioc-biobase_2.14.0-1
Package: r-bioc-biobase
-Package-Time: 544
-Source-Version: 2.12.2-1
-Space: 10092
+Package-Time: 532
+Source-Version: 2.14.0-1
+Space: 9140
Status: successful
-Version: 2.12.2-1
+Version: 2.14.0-1
────────────────────────────────────────────────────────────────────────────────
-Finished at 20110804-0034
-Build needed 00:09:04, 10092k disc space
+Finished at 20111102-0607
+Build needed 00:08:52, 9140k disc space
Signature with key '3EA9BA30' requested:
diff --git a/hurd-i386.log b/hurd-i386.log
index 81d663a..badf064 100644
--- a/hurd-i386.log
+++ b/hurd-i386.log
@@ -1,140 +1,82 @@
-From buildd at rossini.debian.net Thu Aug 04 01:52:28 2011
-Return-path: <buildd at rossini.debian.net>
-Received: from io.ethz.ch ([129.132.80.17] helo=io.debian.net)
+From buildd at bach.debian.net Wed Nov 02 06:13:59 2011
+Return-path: <buildd at bach.debian.net>
+Received: from callisto.debian.net ([80.87.129.151])
by grieg.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
- (Exim 4.72) (envelope-from <buildd at rossini.debian.net>)
- id 1Qon6p-0000vd-Et
- for logs at buildd.debian.org; Thu, 04 Aug 2011 01:52:28 +0000
-Received: from hurd.ethz.ch ([192.33.98.55] helo=rossini.debian.net)
- by io.debian.net with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
- (Exim 4.72) (envelope-from <buildd at rossini.debian.net>)
- id 1Qon6n-0008YJ-88; Thu, 04 Aug 2011 03:52:25 +0200
-Received: from buildd by rossini.debian.net with local (Exim 4.72)
- (envelope-from <buildd at rossini.debian.net>)
- id 1Qon6j-000244-Oc; Thu, 04 Aug 2011 01:52:22 +0000
-Message-Id: <E1Qon6j-000244-Oc at rossini.debian.net>
-MIME-Version: 1.0
-Content-Transfer-Encoding: binary
-X-Mailer: MIME::Lite 3.027 (F2.78; B3.08; Q3.08)
-Date: Thu, 4 Aug 2011 01:52:21 +0000
-From: Build Daemon <buildd at rossini.debian.net>
-To: samuel.thibault at labri.fr, mbanck at gmx.net, logs at buildd.debian-ports.org,
- logs at buildd.debian.org, debian-hurd-build-logs at lists.alioth.debian.org
-Subject: Log for successful build of r-bioc-biobase_2.12.2-1 on hurd-i386
- (dist=sid)
+ (Exim 4.72) (envelope-from <buildd at bach.debian.net>)
+ id 1RLU5G-0000dd-NA
+ for logs at buildd.debian.org; Wed, 02 Nov 2011 06:13:59 +0000
+Received: from bach.debian.net ([10.3.0.1])
+ by callisto.debian.net with esmtp (Exim 4.69)
+ (envelope-from <buildd at bach.debian.net>)
+ id 1RLU5B-0005Ul-L1; Wed, 02 Nov 2011 06:13:53 +0000
+Received: from buildd by bach.debian.net with local (Exim 4.72)
+ (envelope-from <buildd at bach.debian.net>)
+ id 1RLU5M-0004qt-C1; Wed, 02 Nov 2011 06:14:04 +0000
+Date: Wed, 02 Nov 2011 06:14:04 +0000
+Message-Id: <E1RLU5M-0004qt-C1 at bach.debian.net>
+From: Build Daemon <buildd at bach.debian.net>
+To: samuel.thibault at ens-lyon.org, mbanck at gmx.net, logs at buildd.debian-ports.org,
+ logs at buildd.debian.org
+Subject: Log for successful build of r-bioc-biobase_2.14.0-1 on hurd-i386
+ (dist=unstable)
+Content-Type: text/plain; charset=UTF-8
+Content-Transfer-Encoding: 8bit
Delivered-To: logs at buildd.debian.org
-sbuild (Debian sbuild) 0.62.3 (11 Jun 2011) on rossini.debian.net
+sbuild (Debian sbuild) 0.61.0 (23 Feb 2011) on bach.debian.net
╔══════════════════════════════════════════════════════════════════════════════╗
-║ r-bioc-biobase 2.12.2-1 (hurd-i386) 04 Aug 2011 01:29 ║
+║ r-bioc-biobase 2.14.0-1 (hurd-i386) 02 nov. 2011 06:02 ║
╚══════════════════════════════════════════════════════════════════════════════╝
Package: r-bioc-biobase
-Version: 2.12.2-1
-Source Version: 2.12.2-1
-Distribution: sid
+Version: 2.14.0-1
+Source Version: 2.14.0-1
Architecture: hurd-i386
-
-I: NOTICE: Log filtering will replace 'build/r-bioc-biobase-kt2cWl/r-bioc-biobase-2.12.2' with '«PKGBUILDDIR»'
-I: NOTICE: Log filtering will replace 'build/r-bioc-biobase-kt2cWl' with '«BUILDDIR»'
-I: NOTICE: Log filtering will replace 'home/buildd/build/chroot-sid' with '«CHROOT»'
-W: Stripped single quote from command for security:
- use strict;
- use warnings;
- use POSIX;
- use FileHandle;
-
- my $lockfile="/var/lock/sbuild";
- my $try = 0;
-
- repeat:
- if (!sysopen( F, $lockfile, O_WRONLY|O_CREAT|O_TRUNC|O_EXCL, 0644 )){
- if ($! == EEXIST) {
- # lock file exists, wait
- goto repeat if !open( F, "<$lockfile" );
- my $line = <F>;
- my ($job, $pid, $user);
- close( F );
- if ($line !~ /^(\S+)\s+(\S+)\s+(\S+)/) {
- print STDERR "Bad lock file contents ($lockfile) -- still trying\n";
- } else {
- ($job, $pid, $user) = ($1, $2, $3);
- if (kill( 0, $pid ) == 0 && $! == ESRCH) {
- # process doesn't exist anymore, remove stale lock
- print STDERR "Removing stale lock file $lockfile ".
- "(job $job, pid $pid, user $user)\n";
- if (!unlink($lockfile)) {
- if ($! != ENOENT) {
- print STDERR "Cannot remove chroot lock file $lockfile: $!\n";
- exit 1;
- }
- }
- }
- }
- ++$try;
- if ($try > 120) {
- print STDERR "Lockfile $lockfile still present after " .
- 120 * 5 . " seconds -- giving up\n";
- exit 1;
- }
- print STDERR "Another sbuild process (job $job, pid $pid by user $user) is currently using the build chroot; waiting...\n"
- if $try == 1;
- sleep 5;
- goto repeat;
- } else {
- print STDERR "Can't create lock file $lockfile: $!\n";
- exit 1;
- }
- }
-
- F->print("r-bioc-biobase_2.12.2-1 4939 buildd\n");
- F->close();
-
- exit 0;
-
-
-┌──────────────────────────────────────────────────────────────────────────────┐
-│ Update chroot │
-└──────────────────────────────────────────────────────────────────────────────┘
-
-Ign file: ./ InRelease
-Ign file: ./ Release.gpg
-Ign file: ./ Release
-Ign file: ./ Translation-en
-Hit http://ftp.ch.debian.org unstable InRelease
-Hit http://ftp.ch.debian.org experimental InRelease
-Hit http://ftp.fr.debian.org unstable InRelease
-Hit http://ftp.fr.debian.org experimental InRelease
+Hit http://ftp.uk.debian.org sid InRelease
+Hit http://ftp.fr.debian.org sid InRelease
Ign http://incoming.debian.org InRelease
+Hit http://ftp.uk.debian.org sid/main Sources/DiffIndex
Ign http://ftp.debian-ports.org unreleased InRelease
-Get:1 http://incoming.debian.org Release.gpg [836 B]
-Get:2 http://incoming.debian.org Release [1604 B]
-Get:3 http://ftp.debian-ports.org unreleased Release.gpg [835 B]
-Hit http://ftp.ch.debian.org unstable/main Sources/DiffIndex
-Hit http://ftp.ch.debian.org unstable/contrib Sources/DiffIndex
-Hit http://ftp.fr.debian.org unstable/main Sources/DiffIndex
-Hit http://ftp.ch.debian.org unstable/non-free Sources/DiffIndex
-Hit http://ftp.ch.debian.org unstable/main hurd-i386 Packages/DiffIndex
-Hit http://ftp.ch.debian.org unstable/main TranslationIndex
-Get:4 http://ftp.debian-ports.org unreleased Release [23.7 kB]
-Hit http://ftp.ch.debian.org experimental/main Sources/DiffIndex
-Hit http://ftp.ch.debian.org experimental/contrib Sources/DiffIndex
-Hit http://ftp.ch.debian.org experimental/non-free Sources/DiffIndex
-Hit http://ftp.fr.debian.org unstable/contrib Sources/DiffIndex
-Hit http://ftp.fr.debian.org unstable/non-free Sources/DiffIndex
-Hit http://ftp.fr.debian.org unstable/main hurd-i386 Packages/DiffIndex
-Hit http://ftp.fr.debian.org unstable/main TranslationIndex
-Hit http://ftp.fr.debian.org experimental/main Sources/DiffIndex
-Hit http://ftp.fr.debian.org experimental/contrib Sources/DiffIndex
-Hit http://ftp.fr.debian.org experimental/non-free Sources/DiffIndex
-Get:5 http://incoming.debian.org Sources [30.1 kB]
-Get:6 http://ftp.debian-ports.org unreleased/main hurd-i386 Packages [43.6 kB]
-Get:7 http://incoming.debian.org Packages [212 kB]
+Hit http://incoming.debian.org Release.gpg
+Hit http://ftp.uk.debian.org sid/contrib Sources/DiffIndex
+Hit http://ftp.uk.debian.org sid/non-free Sources/DiffIndex
+Hit http://ftp.uk.debian.org sid/main hurd-i386 Packages/DiffIndex
+Hit http://ftp.uk.debian.org sid/contrib hurd-i386 Packages/DiffIndex
+Hit http://ftp.uk.debian.org sid/non-free hurd-i386 Packages/DiffIndex
+Ign http://ftp.uk.debian.org sid/contrib TranslationIndex
+Hit http://ftp.uk.debian.org sid/main TranslationIndex
+Ign http://ftp.uk.debian.org sid/non-free TranslationIndex
+Hit http://ftp.fr.debian.org sid/main Sources/DiffIndex
+Hit http://ftp.uk.debian.org sid/main Translation-fr
+Hit http://ftp.debian-ports.org unreleased Release.gpg
+Hit http://incoming.debian.org Release
+Hit http://ftp.fr.debian.org sid/contrib Sources/DiffIndex
+Hit http://ftp.fr.debian.org sid/non-free Sources/DiffIndex
+Hit http://ftp.fr.debian.org sid/main hurd-i386 Packages/DiffIndex
+Hit http://ftp.fr.debian.org sid/contrib hurd-i386 Packages/DiffIndex
+Hit http://ftp.debian-ports.org unreleased Release
+Hit http://ftp.fr.debian.org sid/non-free hurd-i386 Packages/DiffIndex
+Ign http://ftp.fr.debian.org sid/contrib TranslationIndex
+Hit http://ftp.fr.debian.org sid/main TranslationIndex
+Ign http://ftp.fr.debian.org sid/non-free TranslationIndex
+Ign http://ftp.uk.debian.org sid/contrib Translation-en
+Ign http://ftp.uk.debian.org sid/contrib Translation-fr
+Ign http://ftp.uk.debian.org sid/non-free Translation-en
+Ign http://ftp.uk.debian.org sid/non-free Translation-fr
+Hit http://ftp.fr.debian.org sid/main Translation-fr
+Hit http://incoming.debian.org Sources
+Hit http://incoming.debian.org Packages
+Hit http://ftp.debian-ports.org unreleased/main hurd-i386 Packages
Ign http://ftp.debian-ports.org unreleased/main TranslationIndex
-Ign http://ftp.debian-ports.org unreleased/main Translation-en
+Ign http://ftp.fr.debian.org sid/contrib Translation-en
+Ign http://ftp.fr.debian.org sid/contrib Translation-fr
+Ign http://ftp.fr.debian.org sid/non-free Translation-en
+Ign http://ftp.fr.debian.org sid/non-free Translation-fr
Ign http://incoming.debian.org Translation-en
-Fetched 313 kB in 2min 52s (1818 B/s)
+Ign http://incoming.debian.org Translation-fr
+Ign http://ftp.debian-ports.org unreleased/main Translation-en
+Ign http://ftp.debian-ports.org unreleased/main Translation-fr
Reading package lists...
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -155,138 +97,146 @@ Building dependency tree...
Reading state information...
NOTICE: 'r-bioc-biobase' packaging is maintained in the 'Git' version control system at:
git://git.debian.org/git/debian-med/r-bioc-biobase.git
-Need to get 2229 kB of source archives.
-Get:1 http://incoming.debian.org/buildd-unstable/ r-bioc-biobase 2.12.2-1 (dsc) [1944 B]
-Get:2 http://incoming.debian.org/buildd-unstable/ r-bioc-biobase 2.12.2-1 (tar) [2222 kB]
-Get:3 http://incoming.debian.org/buildd-unstable/ r-bioc-biobase 2.12.2-1 (diff) [5417 B]
-Fetched 2229 kB in 11s (202 kB/s)
+Need to get 1934 kB of source archives.
+Get:1 http://incoming.debian.org/buildd-unstable/ r-bioc-biobase 2.14.0-1 (dsc) [2004 B]
+Get:2 http://incoming.debian.org/buildd-unstable/ r-bioc-biobase 2.14.0-1 (tar) [1926 kB]
+Get:3 http://incoming.debian.org/buildd-unstable/ r-bioc-biobase 2.14.0-1 (diff) [5645 B]
+Fetched 1934 kB in 6s (284 kB/s)
Download complete and in download only mode
Check arch
──────────
-Merged Build-Depends: build-essential, fakeroot
-Filtered Build-Depends: build-essential, fakeroot
-dpkg-deb: building package `sbuild-build-depends-core-dummy' in `/«BUILDDIR»/resolver-3PLlBm/apt_archive/sbuild-build-depends-core-dummy.deb'.
-gpg: WARNING: using insecure memory!
-gpg: please see http://www.gnupg.org/faq.html for more information
-OK
-Reading package lists...
┌──────────────────────────────────────────────────────────────────────────────┐
-│ Install core build dependencies (apt-based resolver) │
+│ Install core build dependencies (internal resolver) │
└──────────────────────────────────────────────────────────────────────────────┘
-Installing build dependencies
+Build-Depends: build-essential, fakeroot
+Checking for already installed dependencies...
+build-essential: already installed (11.5)
+fakeroot: already installed (1.15.1-1)
+Checking for dependency conflicts...
+Installing positive dependencies:
Reading package lists...
Building dependency tree...
Reading state information...
-The following package was automatically installed and is no longer required:
- libboost-iostreams1.42.0
+The following packages were automatically installed and are no longer required:
+ libcwidget3 libsigc++-2.0-0c2a
Use 'apt-get autoremove' to remove them.
-The following NEW packages will be installed:
- sbuild-build-depends-core-dummy
-0 upgraded, 1 newly installed, 0 to remove and 45 not upgraded.
-Need to get 0 B/710 B of archives.
-After this operation, 0 B of additional disk space will be used.
-WARNING: The following packages cannot be authenticated!
- sbuild-build-depends-core-dummy
-Authentication warning overridden.
-Selecting previously deselected package sbuild-build-depends-core-dummy.
-(Reading database ... 12546 files and directories currently installed.)
-Unpacking sbuild-build-depends-core-dummy (from .../sbuild-build-depends-core-dummy.deb) ...
-Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
-Merged Build-Depends: base-files, base-passwd, bash, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, hurd, ncurses-base, ncurses-bin, perl-base, sed, sysvinit-utils, sysvinit, tar, bsdutils, util-linux, libc0.3-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), hurd-dev, cdbs, debhelper (>= 8), r-base-dev
-Filtered Build-Depends: base-files, base-passwd, bash, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, hurd, ncurses-base, ncurses-bin, perl-base, sed, sysvinit-utils, sysvinit, tar, bsdutils, util-linux, libc0.3-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), hurd-dev, cdbs, debhelper (>= 8), r-base-dev
-dpkg-deb: building package `sbuild-build-depends-r-bioc-biobase-dummy' in `/«BUILDDIR»/resolver-DkI5MJ/apt_archive/sbuild-build-depends-r-bioc-biobase-dummy.deb'.
-gpg: WARNING: using insecure memory!
-gpg: please see http://www.gnupg.org/faq.html for more information
-OK
+0 upgraded, 0 newly installed, 0 to remove and 70 not upgraded.
+Removing negative dependencies:
Reading package lists...
+Building dependency tree...
+Reading state information...
+The following packages were automatically installed and are no longer required:
+ libcwidget3 libsigc++-2.0-0c2a
+Use 'apt-get autoremove' to remove them.
+0 upgraded, 0 newly installed, 0 to remove and 70 not upgraded.
+Checking correctness of dependencies...
┌──────────────────────────────────────────────────────────────────────────────┐
-│ Install r-bioc-biobase build dependencies (apt-based resolver) │
+│ Install r-bioc-biobase build dependencies (internal resolver) │
└──────────────────────────────────────────────────────────────────────────────┘
-Installing build dependencies
+Build-Depends: base-files, base-passwd, bash, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, hurd, ncurses-base, ncurses-bin, perl-base, sed, sysvinit-utils, sysvinit, tar, bsdutils, util-linux, libc0.3-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), hurd-dev, cdbs, debhelper (>= 8), r-base-dev (>= 2.10)
+Checking for already installed dependencies...
+base-files: already installed (6.4)
+base-passwd: already installed (3.5.22)
+bash: already installed (4.1-3+hurd.1)
+coreutils: already installed (8.5-1)
+dash: already installed (0.5.5.1-7.4)
+debianutils: already installed (4.0.2)
+diffutils: already installed (1:3.0-1)
+dpkg: already installed (1.16.0.3)
+e2fsprogs: already installed (1.42~WIP-2011-07-02-1)
+findutils: already installed (4.4.2-1+b1)
+grep: already installed (2.9-1)
+gzip: already installed (1.3.12-9)
+hostname: already installed (3.06)
+hurd: already installed (20110519-3)
+ncurses-base: already installed (5.9-1)
+ncurses-bin: already installed (5.9-2)
+perl-base: already installed (5.12.4-4)
+sed: already installed (4.2.1-9)
+sysvinit-utils: already installed (2.88dsf-13.10)
+sysvinit: already installed (2.88dsf-13.10)
+tar: already installed (1.25-2)
+bsdutils: already installed (1:2.16.2-0)
+util-linux: already installed (2.16.2-0)
+libc0.3-dev: already installed (2.13-21)
+gcc: already installed (4:4.6.1-2 >= 4:4.4.3 is satisfied)
+g++: already installed (4:4.6.0-6 >= 4:4.4.3 is satisfied)
+make: already installed (3.81-8.1)
+dpkg-dev: already installed (1.16.1 >= 1.13.5 is satisfied)
+hurd-dev: already installed (20110519-3)
+cdbs: missing
+debhelper: already installed (8.9.8 >= 8 is satisfied)
+r-base-dev: missing
+Using default version 2.14.0-1
+Checking for dependency conflicts...
+Installing positive dependencies: cdbs r-base-dev
Reading package lists...
Building dependency tree...
Reading state information...
-The following package was automatically installed and is no longer required:
- libboost-iostreams1.42.0
+The following packages were automatically installed and are no longer required:
+ libcwidget3 libsigc++-2.0-0c2a
Use 'apt-get autoremove' to remove them.
The following extra packages will be installed:
- cdbs debhelper dpatch file fontconfig fontconfig-config gettext gettext-base
- html2text intltool-debian libblas-dev libblas3gf libbz2-dev libcairo2
- libcroco3 libdatrie1 libexpat1 libfontconfig1 libfreetype6 libglib2.0-0
- libice6 libjpeg62 libjpeg8 libjpeg8-dev liblapack-dev liblapack3gf libmagic1
- libncurses5-dev libpango1.0-0 libpaper-utils libpaper1 libpcre3-dev
- libpcrecpp0 libpixman-1-0 libpng12-dev libreadline-dev libreadline6-dev
- libsm6 libthai-data libthai0 libtiff4 libunistring0 libx11-6 libx11-data
- libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2
- libxml2 libxrender1 libxss1 libxt6 po-debconf r-base-core r-base-dev tcl8.5
- tk8.5 ttf-dejavu-core ucf unzip x11-common xdg-utils zip zlib1g-dev
+ dpatch libblas-dev libblas3gf libbz2-dev libcairo2 libdatrie1 libice6
+ libjpeg8 libjpeg8-dev liblapack-dev liblapack3gf liblzma5 libncurses5-dev
+ libpango1.0-0 libpaper-utils libpaper1 libpcre3-dev libpcrecpp0
+ libpixman-1-0 libpng12-dev libreadline-dev libreadline6-dev libsm6
+ libthai-data libthai0 libtiff4 libtinfo-dev libx11-6 libx11-data libxau6
+ libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxrender1
+ libxss1 libxt6 r-base-core tcl8.5 tk8.5 unzip x11-common xdg-utils zip
Suggested packages:
- devscripts dh-make curl defoma gettext-doc ncurses-doc ttf-baekmuk
- ttf-arphic-gbsn00lp ttf-arphic-bsmi00lp ttf-arphic-gkai00mp
- ttf-arphic-bkai00mp libmail-box-perl ess r-doc-info r-doc-pdf r-mathlib
- r-base-html tclreadline gvfs-bin
+ devscripts curl ncurses-doc ttf-baekmuk ttf-arphic-gbsn00lp
+ ttf-arphic-bsmi00lp ttf-arphic-gkai00mp ttf-arphic-bkai00mp ess r-doc-info
+ r-doc-pdf r-mathlib r-base-html tclreadline gvfs-bin
Recommended packages:
- autotools-dev patchutils autopoint libglib2.0-data shared-mime-info
- x-ttcidfont-conf xml-core libmail-sendmail-perl r-recommended r-doc-html
- xterm x-terminal-emulator libfile-mimeinfo-perl x11-utils x11-xserver-utils
+ autotools-dev patchutils x-ttcidfont-conf r-recommended r-doc-html xterm
+ x-terminal-emulator libfile-mimeinfo-perl x11-utils x11-xserver-utils
The following NEW packages will be installed:
- cdbs debhelper dpatch file fontconfig fontconfig-config gettext gettext-base
- html2text intltool-debian libblas-dev libblas3gf libbz2-dev libcairo2
- libcroco3 libdatrie1 libexpat1 libfontconfig1 libfreetype6 libglib2.0-0
- libice6 libjpeg62 libjpeg8 libjpeg8-dev liblapack-dev liblapack3gf libmagic1
- libncurses5-dev libpango1.0-0 libpaper-utils libpaper1 libpcre3-dev
- libpcrecpp0 libpixman-1-0 libpng12-dev libreadline-dev libreadline6-dev
- libsm6 libthai-data libthai0 libtiff4 libunistring0 libx11-6 libx11-data
- libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2
- libxml2 libxrender1 libxss1 libxt6 po-debconf r-base-core r-base-dev
- sbuild-build-depends-r-bioc-biobase-dummy tcl8.5 tk8.5 ttf-dejavu-core ucf
- unzip x11-common xdg-utils zip zlib1g-dev
-0 upgraded, 68 newly installed, 0 to remove and 45 not upgraded.
-Need to get 0 B/41.0 MB of archives.
-After this operation, 99.4 MB of additional disk space will be used.
+ cdbs dpatch libblas-dev libblas3gf libbz2-dev libcairo2 libdatrie1 libice6
+ libjpeg8 libjpeg8-dev liblapack-dev liblapack3gf liblzma5 libncurses5-dev
+ libpango1.0-0 libpaper-utils libpaper1 libpcre3-dev libpcrecpp0
+ libpixman-1-0 libpng12-dev libreadline-dev libreadline6-dev libsm6
+ libthai-data libthai0 libtiff4 libtinfo-dev libx11-6 libx11-data libxau6
+ libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxrender1
+ libxss1 libxt6 r-base-core r-base-dev tcl8.5 tk8.5 unzip x11-common
+ xdg-utils zip
+0 upgraded, 48 newly installed, 0 to remove and 70 not upgraded.
+Need to get 19.0 MB/35.9 MB of archives.
+After this operation, 74.6 MB of additional disk space will be used.
WARNING: The following packages cannot be authenticated!
- libdatrie1 libexpat1 libfreetype6 ucf ttf-dejavu-core fontconfig-config
- libfontconfig1 x11-common libice6 libpixman-1-0 libxau6 libxdmcp6 libxcb1
- libx11-data libx11-6 libxcb-render0 libxcb-shm0 libxrender1 libcairo2
- libglib2.0-0 libthai-data libthai0 libxft2 fontconfig libpango1.0-0 libsm6
- libxext6 libxt6 libmagic1 file gettext-base libxml2 html2text libcroco3
- libunistring0 gettext intltool-debian po-debconf debhelper cdbs dpatch
- libblas3gf libblas-dev libbz2-dev libjpeg62 libjpeg8 libjpeg8-dev
- liblapack3gf liblapack-dev libncurses5-dev libpaper1 libpaper-utils
- libpcrecpp0 libpcre3-dev zlib1g-dev libpng12-dev libreadline6-dev
- libreadline-dev libtiff4 libxss1 zip unzip xdg-utils tcl8.5 tk8.5
- r-base-core r-base-dev sbuild-build-depends-r-bioc-biobase-dummy
-
Extracting templates from packages: 44%
Extracting templates from packages: 88%
Extracting templates from packages: 100%
-Preconfiguring packages ...
+ liblzma5 libdatrie1 x11-common libice6 libpixman-1-0 libxau6 libxdmcp6
+ libxcb1 libx11-data libx11-6 libxcb-render0 libxcb-shm0 libxrender1
+ libcairo2 libthai-data libthai0 libxft2 libpango1.0-0 libpcrecpp0 libsm6
+ libjpeg8 libtiff4 libxext6 libxss1 libxt6 cdbs dpatch libblas3gf libblas-dev
+ libbz2-dev libjpeg8-dev liblapack3gf liblapack-dev libtinfo-dev
+ libncurses5-dev libpaper1 libpaper-utils libpcre3-dev libpng12-dev
+ libreadline6-dev libreadline-dev zip unzip xdg-utils tcl8.5 tk8.5
+ r-base-core r-base-dev
Authentication warning overridden.
+Get:1 http://ftp.uk.debian.org/debian/ sid/main r-base-core hurd-i386 2.14.0-1 [19.0 MB]
+Get:2 http://ftp.uk.debian.org/debian/ sid/main r-base-dev all 2.14.0-1 [3488 B]
+
+Extracting templates from packages: 62%
+Extracting templates from packages: 100%
+Preconfiguring packages ...
+Fetched 19.0 MB in 10s (1873 kB/s)
+Selecting previously deselected package liblzma5.
+(Reading database ... 16884 files and directories currently installed.)
+Unpacking liblzma5 (from .../liblzma5_5.1.1alpha+20110809-3_hurd-i386.deb) ...
Selecting previously deselected package libdatrie1.
-(Reading database ... 12546 files and directories currently installed.)
Unpacking libdatrie1 (from .../libdatrie1_0.2.4-3_hurd-i386.deb) ...
-Selecting previously deselected package libexpat1.
-Unpacking libexpat1 (from .../libexpat1_2.0.1-7_hurd-i386.deb) ...
-Selecting previously deselected package libfreetype6.
-Unpacking libfreetype6 (from .../libfreetype6_2.4.4-2_hurd-i386.deb) ...
-Moving old data out of the way
-Selecting previously deselected package ucf.
-Unpacking ucf (from .../ucf_3.0025+nmu2_all.deb) ...
-Selecting previously deselected package ttf-dejavu-core.
-Unpacking ttf-dejavu-core (from .../ttf-dejavu-core_2.33-1_all.deb) ...
-Selecting previously deselected package fontconfig-config.
-Unpacking fontconfig-config (from .../fontconfig-config_2.8.0-3_all.deb) ...
-Selecting previously deselected package libfontconfig1.
-Unpacking libfontconfig1 (from .../libfontconfig1_2.8.0-3_hurd-i386.deb) ...
Selecting previously deselected package x11-common.
-Unpacking x11-common (from .../x11-common_1%3a7.6+7_all.deb) ...
+Unpacking x11-common (from .../x11-common_1%3a7.6+9_all.deb) ...
Selecting previously deselected package libice6.
Unpacking libice6 (from .../libice6_2%3a1.0.7-2_hurd-i386.deb) ...
Selecting previously deselected package libpixman-1-0.
-Unpacking libpixman-1-0 (from .../libpixman-1-0_0.22.2-1_hurd-i386.deb) ...
+Unpacking libpixman-1-0 (from .../libpixman-1-0_0.23.8-1_hurd-i386.deb) ...
Selecting previously deselected package libxau6.
Unpacking libxau6 (from .../libxau6_1%3a1.0.6-3_hurd-i386.deb) ...
Selecting previously deselected package libxdmcp6.
@@ -294,9 +244,9 @@ Unpacking libxdmcp6 (from .../libxdmcp6_1%3a1.1.0-3_hurd-i386.deb) ...
Selecting previously deselected package libxcb1.
Unpacking libxcb1 (from .../libxcb1_1.7-3_hurd-i386.deb) ...
Selecting previously deselected package libx11-data.
-Unpacking libx11-data (from .../libx11-data_2%3a1.4.4-1_all.deb) ...
+Unpacking libx11-data (from .../libx11-data_2%3a1.4.4-2_all.deb) ...
Selecting previously deselected package libx11-6.
-Unpacking libx11-6 (from .../libx11-6_2%3a1.4.4-1_hurd-i386.deb) ...
+Unpacking libx11-6 (from .../libx11-6_2%3a1.4.4-2_hurd-i386.deb) ...
Selecting previously deselected package libxcb-render0.
Unpacking libxcb-render0 (from .../libxcb-render0_1.7-3_hurd-i386.deb) ...
Selecting previously deselected package libxcb-shm0.
@@ -305,88 +255,60 @@ Selecting previously deselected package libxrender1.
Unpacking libxrender1 (from .../libxrender1_1%3a0.9.6-2_hurd-i386.deb) ...
Selecting previously deselected package libcairo2.
Unpacking libcairo2 (from .../libcairo2_1.10.2-6.1_hurd-i386.deb) ...
-Selecting previously deselected package libglib2.0-0.
-Unpacking libglib2.0-0 (from .../libglib2.0-0_2.28.6-1_hurd-i386.deb) ...
Selecting previously deselected package libthai-data.
Unpacking libthai-data (from .../libthai-data_0.1.15-2_all.deb) ...
Selecting previously deselected package libthai0.
Unpacking libthai0 (from .../libthai0_0.1.15-2+b1_hurd-i386.deb) ...
Selecting previously deselected package libxft2.
Unpacking libxft2 (from .../libxft2_2.2.0-3_hurd-i386.deb) ...
-Selecting previously deselected package fontconfig.
-Unpacking fontconfig (from .../fontconfig_2.8.0-3_hurd-i386.deb) ...
Selecting previously deselected package libpango1.0-0.
-Unpacking libpango1.0-0 (from .../libpango1.0-0_1.28.4-2_hurd-i386.deb) ...
+Unpacking libpango1.0-0 (from .../libpango1.0-0_1.29.4-2_hurd-i386.deb) ...
+Selecting previously deselected package libpcrecpp0.
+Unpacking libpcrecpp0 (from .../libpcrecpp0_8.12-4_hurd-i386.deb) ...
Selecting previously deselected package libsm6.
Unpacking libsm6 (from .../libsm6_2%3a1.2.0-2_hurd-i386.deb) ...
+Selecting previously deselected package libjpeg8.
+Unpacking libjpeg8 (from .../libjpeg8_8c-2_hurd-i386.deb) ...
+Selecting previously deselected package libtiff4.
+Unpacking libtiff4 (from .../libtiff4_3.9.5-2_hurd-i386.deb) ...
Selecting previously deselected package libxext6.
Unpacking libxext6 (from .../libxext6_2%3a1.3.0-3_hurd-i386.deb) ...
+Selecting previously deselected package libxss1.
+Unpacking libxss1 (from .../libxss1_1%3a1.2.1-2_hurd-i386.deb) ...
Selecting previously deselected package libxt6.
Unpacking libxt6 (from .../libxt6_1%3a1.1.1-2_hurd-i386.deb) ...
-Selecting previously deselected package libmagic1.
-Unpacking libmagic1 (from .../libmagic1_5.03-5+b1_hurd-i386.deb) ...
-Selecting previously deselected package file.
-Unpacking file (from .../file_5.03-5+b1_hurd-i386.deb) ...
-Selecting previously deselected package gettext-base.
-Unpacking gettext-base (from .../gettext-base_0.18.1.1-3_hurd-i386.deb) ...
-Selecting previously deselected package libxml2.
-Unpacking libxml2 (from .../libxml2_2.7.8.dfsg-4_hurd-i386.deb) ...
-Selecting previously deselected package html2text.
-Unpacking html2text (from .../html2text_1.3.2a-15+b1_hurd-i386.deb) ...
-Selecting previously deselected package libcroco3.
-Unpacking libcroco3 (from .../libcroco3_0.6.2-1_hurd-i386.deb) ...
-Selecting previously deselected package libunistring0.
-Unpacking libunistring0 (from .../libunistring0_0.9.3-4_hurd-i386.deb) ...
-Selecting previously deselected package gettext.
-Unpacking gettext (from .../gettext_0.18.1.1-3_hurd-i386.deb) ...
-Selecting previously deselected package intltool-debian.
-Unpacking intltool-debian (from .../intltool-debian_0.35.0+20060710.1_all.deb) ...
-Selecting previously deselected package po-debconf.
-Unpacking po-debconf (from .../po-debconf_1.0.16+nmu1_all.deb) ...
-Selecting previously deselected package debhelper.
-Unpacking debhelper (from .../debhelper_8.9.3_all.deb) ...
Selecting previously deselected package cdbs.
-Unpacking cdbs (from .../archives/cdbs_0.4.96_all.deb) ...
+Unpacking cdbs (from .../archives/cdbs_0.4.99_all.deb) ...
Selecting previously deselected package dpatch.
-Unpacking dpatch (from .../archives/dpatch_2.0.31_all.deb) ...
+Unpacking dpatch (from .../archives/dpatch_2.0.33_all.deb) ...
Selecting previously deselected package libblas3gf.
-Unpacking libblas3gf (from .../libblas3gf_1.2-8_hurd-i386.deb) ...
+Unpacking libblas3gf (from .../libblas3gf_1.2.20110419-2_hurd-i386.deb) ...
Selecting previously deselected package libblas-dev.
-Unpacking libblas-dev (from .../libblas-dev_1.2-8_hurd-i386.deb) ...
+Unpacking libblas-dev (from .../libblas-dev_1.2.20110419-2_hurd-i386.deb) ...
Selecting previously deselected package libbz2-dev.
-Unpacking libbz2-dev (from .../libbz2-dev_1.0.5-6_hurd-i386.deb) ...
-Selecting previously deselected package libjpeg62.
-Unpacking libjpeg62 (from .../libjpeg62_6b1-2_hurd-i386.deb) ...
-Selecting previously deselected package libjpeg8.
-Unpacking libjpeg8 (from .../libjpeg8_8c-2_hurd-i386.deb) ...
+Unpacking libbz2-dev (from .../libbz2-dev_1.0.5-7_hurd-i386.deb) ...
Selecting previously deselected package libjpeg8-dev.
Unpacking libjpeg8-dev (from .../libjpeg8-dev_8c-2_hurd-i386.deb) ...
Selecting previously deselected package liblapack3gf.
-Unpacking liblapack3gf (from .../liblapack3gf_3.3.0-4_hurd-i386.deb) ...
+Unpacking liblapack3gf (from .../liblapack3gf_3.3.1-1_hurd-i386.deb) ...
Selecting previously deselected package liblapack-dev.
-Unpacking liblapack-dev (from .../liblapack-dev_3.3.0-4_hurd-i386.deb) ...
+Unpacking liblapack-dev (from .../liblapack-dev_3.3.1-1_hurd-i386.deb) ...
+Selecting previously deselected package libtinfo-dev.
+Unpacking libtinfo-dev (from .../libtinfo-dev_5.9-2_hurd-i386.deb) ...
Selecting previously deselected package libncurses5-dev.
-Unpacking libncurses5-dev (from .../libncurses5-dev_5.9-1_hurd-i386.deb) ...
+Unpacking libncurses5-dev (from .../libncurses5-dev_5.9-2_hurd-i386.deb) ...
Selecting previously deselected package libpaper1.
Unpacking libpaper1 (from .../libpaper1_1.1.24+nmu1_hurd-i386.deb) ...
Selecting previously deselected package libpaper-utils.
Unpacking libpaper-utils (from .../libpaper-utils_1.1.24+nmu1_hurd-i386.deb) ...
-Selecting previously deselected package libpcrecpp0.
-Unpacking libpcrecpp0 (from .../libpcrecpp0_8.12-3+b1_hurd-i386.deb) ...
Selecting previously deselected package libpcre3-dev.
-Unpacking libpcre3-dev (from .../libpcre3-dev_8.12-3+b1_hurd-i386.deb) ...
-Selecting previously deselected package zlib1g-dev.
-Unpacking zlib1g-dev (from .../zlib1g-dev_1%3a1.2.3.4.dfsg-3_hurd-i386.deb) ...
+Unpacking libpcre3-dev (from .../libpcre3-dev_8.12-4_hurd-i386.deb) ...
Selecting previously deselected package libpng12-dev.
Unpacking libpng12-dev (from .../libpng12-dev_1.2.46-3_hurd-i386.deb) ...
Selecting previously deselected package libreadline6-dev.
-Unpacking libreadline6-dev (from .../libreadline6-dev_6.2-2_hurd-i386.deb) ...
+Unpacking libreadline6-dev (from .../libreadline6-dev_6.2-7_hurd-i386.deb) ...
Selecting previously deselected package libreadline-dev.
-Unpacking libreadline-dev (from .../libreadline-dev_6.2-2_hurd-i386.deb) ...
-Selecting previously deselected package libtiff4.
-Unpacking libtiff4 (from .../libtiff4_3.9.5-1_hurd-i386.deb) ...
-Selecting previously deselected package libxss1.
-Unpacking libxss1 (from .../libxss1_1%3a1.2.1-1_hurd-i386.deb) ...
+Unpacking libreadline-dev (from .../libreadline-dev_6.2-7_hurd-i386.deb) ...
Selecting previously deselected package zip.
Unpacking zip (from .../zip_3.0-4_hurd-i386.deb) ...
Selecting previously deselected package unzip.
@@ -398,84 +320,62 @@ Unpacking tcl8.5 (from .../tcl8.5_8.5.10-1_hurd-i386.deb) ...
Selecting previously deselected package tk8.5.
Unpacking tk8.5 (from .../tk8.5_8.5.10-1_hurd-i386.deb) ...
Selecting previously deselected package r-base-core.
-Unpacking r-base-core (from .../r-base-core_2.13.1-1_hurd-i386.deb) ...
+Unpacking r-base-core (from .../r-base-core_2.14.0-1_hurd-i386.deb) ...
Selecting previously deselected package r-base-dev.
-Unpacking r-base-dev (from .../r-base-dev_2.13.1-1_all.deb) ...
-Selecting previously deselected package sbuild-build-depends-r-bioc-biobase-dummy.
-Unpacking sbuild-build-depends-r-bioc-biobase-dummy (from .../sbuild-build-depends-r-bioc-biobase-dummy.deb) ...
+Unpacking r-base-dev (from .../r-base-dev_2.14.0-1_all.deb) ...
Processing triggers for man-db ...
Processing triggers for install-info ...
+Setting up liblzma5 (5.1.1alpha+20110809-3) ...
Setting up libdatrie1 (0.2.4-3) ...
-Setting up libexpat1 (2.0.1-7) ...
-Setting up libfreetype6 (2.4.4-2) ...
-Setting up ucf (3.0025+nmu2) ...
-Setting up ttf-dejavu-core (2.33-1) ...
-Setting up fontconfig-config (2.8.0-3) ...
-Setting up libfontconfig1 (2.8.0-3) ...
-Setting up x11-common (1:7.6+7) ...
+Setting up x11-common (1:7.6+9) ...
+insserv: warning: script 'K01random-egd' missing LSB tags and overrides
+insserv: warning: script 'random-egd' missing LSB tags and overrides
All runlevel operations denied by policy
invoke-rc.d: policy-rc.d denied execution of start.
Setting up libice6 (2:1.0.7-2) ...
-Setting up libpixman-1-0 (0.22.2-1) ...
+Setting up libpixman-1-0 (0.23.8-1) ...
Setting up libxau6 (1:1.0.6-3) ...
Setting up libxdmcp6 (1:1.1.0-3) ...
Setting up libxcb1 (1.7-3) ...
-Setting up libx11-data (2:1.4.4-1) ...
-Setting up libx11-6 (2:1.4.4-1) ...
+Setting up libx11-data (2:1.4.4-2) ...
+Setting up libx11-6 (2:1.4.4-2) ...
Setting up libxcb-render0 (1.7-3) ...
Setting up libxcb-shm0 (1.7-3) ...
Setting up libxrender1 (1:0.9.6-2) ...
Setting up libcairo2 (1.10.2-6.1) ...
-Setting up libglib2.0-0 (2.28.6-1) ...
-No schema files found: doing nothing.
Setting up libthai-data (0.1.15-2) ...
Setting up libthai0 (0.1.15-2+b1) ...
Setting up libxft2 (2.2.0-3) ...
-Setting up fontconfig (2.8.0-3) ...
-Cleaning up old fontconfig caches... done.
-Regenerating fonts cache... done.
-Setting up libpango1.0-0 (1.28.4-2) ...
+Setting up libpango1.0-0 (1.29.4-2) ...
+Setting up libpcrecpp0 (8.12-4) ...
Setting up libsm6 (2:1.2.0-2) ...
+Setting up libjpeg8 (8c-2) ...
+Setting up libtiff4 (3.9.5-2) ...
Setting up libxext6 (2:1.3.0-3) ...
+Setting up libxss1 (1:1.2.1-2) ...
Setting up libxt6 (1:1.1.1-2) ...
-Setting up libmagic1 (5.03-5+b1) ...
-Setting up file (5.03-5+b1) ...
-Setting up gettext-base (0.18.1.1-3) ...
-Setting up libxml2 (2.7.8.dfsg-4) ...
-Setting up html2text (1.3.2a-15+b1) ...
-Setting up libcroco3 (0.6.2-1) ...
-Setting up libunistring0 (0.9.3-4) ...
-Setting up gettext (0.18.1.1-3) ...
-Setting up intltool-debian (0.35.0+20060710.1) ...
-Setting up po-debconf (1.0.16+nmu1) ...
-Setting up debhelper (8.9.3) ...
-Setting up cdbs (0.4.96) ...
-Setting up dpatch (2.0.31) ...
-Setting up libblas3gf (1.2-8) ...
+Setting up cdbs (0.4.99) ...
+Setting up dpatch (2.0.33) ...
+Setting up libblas3gf (1.2.20110419-2) ...
update-alternatives: using /usr/lib/libblas/libblas.so.3gf to provide /usr/lib/libblas.so.3gf (libblas.so.3gf) in auto mode.
-Setting up libblas-dev (1.2-8) ...
+Setting up libblas-dev (1.2.20110419-2) ...
update-alternatives: using /usr/lib/libblas/libblas.so to provide /usr/lib/libblas.so (libblas.so) in auto mode.
-Setting up libbz2-dev (1.0.5-6) ...
-Setting up libjpeg62 (6b1-2) ...
-Setting up libjpeg8 (8c-2) ...
+Setting up libbz2-dev (1.0.5-7) ...
Setting up libjpeg8-dev (8c-2) ...
-Setting up liblapack3gf (3.3.0-4) ...
+Setting up liblapack3gf (3.3.1-1) ...
update-alternatives: using /usr/lib/lapack/liblapack.so.3gf to provide /usr/lib/liblapack.so.3gf (liblapack.so.3gf) in auto mode.
-Setting up liblapack-dev (3.3.0-4) ...
+Setting up liblapack-dev (3.3.1-1) ...
update-alternatives: using /usr/lib/lapack/liblapack.so to provide /usr/lib/liblapack.so (liblapack.so) in auto mode.
-Setting up libncurses5-dev (5.9-1) ...
+Setting up libtinfo-dev (5.9-2) ...
+Setting up libncurses5-dev (5.9-2) ...
Setting up libpaper1 (1.1.24+nmu1) ...
Creating config file /etc/papersize with new version
Setting up libpaper-utils (1.1.24+nmu1) ...
-Setting up libpcrecpp0 (8.12-3+b1) ...
-Setting up libpcre3-dev (8.12-3+b1) ...
-Setting up zlib1g-dev (1:1.2.3.4.dfsg-3) ...
+Setting up libpcre3-dev (8.12-4) ...
Setting up libpng12-dev (1.2.46-3) ...
-Setting up libreadline6-dev (6.2-2) ...
-Setting up libreadline-dev (6.2-2) ...
-Setting up libtiff4 (3.9.5-1) ...
-Setting up libxss1 (1:1.2.1-1) ...
+Setting up libreadline6-dev (6.2-7) ...
+Setting up libreadline-dev (6.2-7) ...
Setting up zip (3.0-4) ...
Setting up unzip (6.0-5) ...
Setting up xdg-utils (1.1.0~rc1-2) ...
@@ -483,20 +383,23 @@ Setting up tcl8.5 (8.5.10-1) ...
update-alternatives: using /usr/bin/tclsh8.5 to provide /usr/bin/tclsh (tclsh) in auto mode.
Setting up tk8.5 (8.5.10-1) ...
update-alternatives: using /usr/bin/wish8.5 to provide /usr/bin/wish (wish) in auto mode.
-Setting up r-base-core (2.13.1-1) ...
+Setting up r-base-core (2.14.0-1) ...
Setting R_PAPERSIZE_USER default to 'a4'
Creating config file /etc/R/Renviron with new version
-Setting up r-base-dev (2.13.1-1) ...
-Setting up sbuild-build-depends-r-bioc-biobase-dummy (0.invalid.0) ...
-
-┌──────────────────────────────────────────────────────────────────────────────┐
-│ Build environment │
-└──────────────────────────────────────────────────────────────────────────────┘
-
+Setting up r-base-dev (2.14.0-1) ...
+Removing negative dependencies:
+Reading package lists...
+Building dependency tree...
+Reading state information...
+The following packages were automatically installed and are no longer required:
+ libcwidget3 libsigc++-2.0-0c2a
+Use 'apt-get autoremove' to remove them.
+0 upgraded, 0 newly installed, 0 to remove and 70 not upgraded.
+Checking correctness of dependencies...
Kernel: GNU 0.3 hurd-i386 (i686-AT386)
-Toolchain package versions: binutils_2.21.52.20110707-1 dpkg-dev_1.16.0.3 g++-4.5_4.5.3-3 g++-4.6_4.6.1-1+hurd.1 gcc-4.4_4.4.6-6 gcc-4.5_4.5.3-3 gcc-4.6_4.6.1-1+hurd.1 gnumach-dev_2:1.3.99.dfsg.git20110609-1 hurd-dev_20110519-3 libc0.3-dev_2.13-10 libstdc++6_4.6.1-1+hurd.1 libstdc++6-4.5-dev_4.5.3-3 libstdc++6-4.6-dev_4.6.1-1+hurd.1
-Package versions: adduser_3.113 apt_0.8.15.1 apt-utils_0.8.15.1 base-files_6.4 base-passwd_3.5.22 bash_4.1-3+hurd.1 binutils_2.21.52.20110707-1 bsdmainutils_8.2.3 bsdutils_1:2.16.2-0 build-essential_11.5 bzip2_1.0.5-6 cdbs_0.4.96 coreutils_8.5-1 cpio_2.11-7 cpp_4:4.6.0-6 cpp-4.4_4.4.6-6 cpp-4.5_4.5.3-3 cpp-4.6_4.6.1-1+hurd.1 dash_0.5.5.1-7.4 debconf_1.5.40 debfoster_2.6-2 debhelper_8.9.3 debian-archive-keyring_2010.08.28 debian-ports-archive-keyring_2011.01.12 debianutils_4.0.2 diffutils_1:3.0-1 dpatch_2.0.31 dpkg_1.16.0.3 dpkg-dev_1.16.0.3 e2fslibs_1.42~WIP-2011-07-02-1 e2fsprogs_1.42~WIP-2011-07-02-1 fakeroot_1.15.1-1 file_5.03-5+b1 findutils_4.4.2-1+b1 fontconfig_2.8.0-3 fontconfig-config_2.8.0-3 g++_4:4.6.0-6 g++-4.5_4.5.3-3 g++-4.6_4.6.1-1+hurd.1 gawk_1:3.1.7.dfsg-5 gcc_4:4.6.0-6 gcc-4.2-base_4.2.4-6+b1 gcc-4.4_4.4.6-6 gcc-4.4-base_4.4.6-6 gcc-4.5_4.5.3-3 gcc-4.5-base_4.5.3-3 gcc-4.6_4.6.1-1+hurd.1 gcc-4.6-base_4.6.1-1+hurd.1 gettext_0.18.1.1-3 gettext-base_0.18.1.1-3 gfortran_4:4.6.0-6 gfortran-4.4_4.4.6-6 gfortran-4.6_4.6.1-1+hurd.1 gnumach-dev_2:1.3.99.dfsg.git20110609-1 gnupg_1.4.11-3 gobjc-4.4_4.4.6-6 gpgv_1.4.11-3 grep_2.8-2 groff-base_1.21-6 gzip_1.3.12-9 hostname_3.06 html2text_1.3.2a-15+b1 hurd_20110519-3 hurd-dev_20110519-3 ifupdown_0.6.9+hurd.1 inetutils-tools_2:1.8-3 initscripts_2.88dsf-13.10 insserv_1.14.0-2.1 install-info_4.13a.dfsg.1-6 intltool-debian_0.35.0+20060710.1 libacl1_2.2.47-3 libattr1_1:2.4.46-3 libblas-dev_1.2-8 libblas3gf_1.2-8 libblkid1_2.16.2-0 libboost-iostreams1.42.0_1.42.0-4+b2 libboost-iostreams1.46.1_1.46.1-6 libbz2-1.0_1.0.5-6 libbz2-dev_1.0.5-6 libc-bin_2.13-10 libc-dev-bin_2.13-10 libc0.3_2.13-10 libc0.3-dev_2.13-10 libc0.3-xen_2.13-10 libcairo2_1.10.2-6.1 libcloog-ppl0_0.15.9-3 libcomerr2_1.42~WIP-2011-07-02-1 libcroco3_0.6.2-1 libdatrie1_0.2.4-3 libdb5.1_5.1.25-11 libdigest-sha1-perl_2.13-2 libdpkg-perl_1.16.0.3 libelfg0_0.8.13-3 libexpat1_2.0.1-7 libfontconfig1_2.8.0-3 libfreetype6_2.4.4-2 libfribidi0_0.19.2-1 libgcc1_1:4.6.1-1+hurd.1 libgcrypt11_1.4.6-8 libgdbm3_1.8.3-10 libgfortran3_4.6.1-1+hurd.1 libglib2.0-0_2.28.6-1 libgmp10_2:5.0.1+dfsg-7 libgmpxx4ldbl_2:5.0.1+dfsg-7 libgnutls26_2.10.4-2 libgomp1_4.6.1-1+hurd.1 libgpg-error0_1.10-0.3 libice6_2:1.0.7-2 libident_0.22-3 libjpeg62_6b1-2 libjpeg8_8c-2 libjpeg8-dev_8c-2 liblapack-dev_3.3.0-4 liblapack3gf_3.3.0-4 libldap-2.4-2_2.4.25-1 liblocale-gettext-perl_1.05-6+b1 liblzma2_5.0.0-2 liblzo2-2_2.05-1 libmagic1_5.03-5+b1 libmpc2_0.9-3 libmpfr4_3.0.1-4 libncurses5_5.9-1 libncurses5-dev_5.9-1 libncursesw5_5.9-1 libnewt0.52_0.52.11-2.1 libobjc2_4.5.3-3 libpam-modules_1.1.3-2 libpam-modules-bin_1.1.3-2 libpam-runtime_1.1.3-2 libpam0g_1.1.3-2 libpango1.0-0_1.28.4-2 libpaper-utils_1.1.24+nmu1 libpaper1_1.1.24+nmu1 libparted0debian1_2.3-3+hurd.1 libpcre3_8.12-3+b1 libpcre3-dev_8.12-3+b1 libpcrecpp0_8.12-3+b1 libpipeline1_1.2.0-3 libpixman-1-0_0.22.2-1 libpng12-0_1.2.46-3 libpng12-dev_1.2.46-3 libpopt0_1.16-1 libppl-c4_0.11.2-3 libppl9_0.11.2-3 libpthread-stubs0_0.3-2.1+hurd.1 libpthread-stubs0-dev_0.3-2.1+hurd.1 libpwl5_0.11.2-3 libquadmath0_4.6.1-1+hurd.1 libreadline-dev_6.2-2 libreadline6_6.2-2 libreadline6-dev_6.2-2 libsasl2-2_2.1.24~rc1.dfsg1+cvs2011-05-23-4 libsasl2-modules_2.1.24~rc1.dfsg1+cvs2011-05-23-4 libslang2_2.2.4-2 libsm6_2:1.2.0-2 libss2_1.42~WIP-2011-07-02-1 libssl0.9.8_0.9.8o-7+b1 libssl1.0.0_1.0.0d-3 libstdc++6_4.6.1-1+hurd.1 libstdc++6-4.5-dev_4.5.3-3 libstdc++6-4.6-dev_4.6.1-1+hurd.1 libsysfs2_2.1.0+repack-1 libtasn1-3_2.9-4 libtext-charwidth-perl_0.04-6+b1 libtext-wrapi18n-perl_0.06-7 libthai-data_0.1.15-2 libthai0_0.1.15-2+b1 libtiff4_3.9.5-1 libtimedate-perl_1.2000-1 libunistring0_0.9.3-4 libusb-0.1-4p_2:0.1.12-13+hurd.1 libuuid1_2.19.1-4 libx11-6_2:1.4.4-1 libx11-data_2:1.4.4-1 libxau6_1:1.0.6-3 libxcb-render0_1.7-3 libxcb-shm0_1.7-3 libxcb1_1.7-3 libxdmcp6_1:1.1.0-3 libxext6_2:1.3.0-3 libxft2_2.2.0-3 libxml2_2.7.8.dfsg-4 libxrender1_1:0.9.6-2 libxss1_1:1.2.1-1 libxt6_1:1.1.1-2 lsb-base_3.2-27 make_3.81-8.1 man-db_2.6.0.2-1 mawk_1.3.3-15 multiarch-support_2.13-10 ncurses-base_5.9-1 ncurses-bin_5.9-1 netbase_4.46 netcat-traditional_1.10-39 original-awk_2011-05-06-1 passwd_1:4.1.4.2+svn3283-3 patch_2.6.1-2 perl_5.12.3-6 perl-base_5.12.3-6 perl-modules_5.12.3-6 po-debconf_1.0.16+nmu1 procps_1:3.2.8-10 psmisc_22.3-1 r-base-core_2.13.1-1 r-base-dev_2.13.1-1 random-egd_0.5-0+hurd.1 readline-common_6.2-2 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-r-bioc-biobase-dummy_0.invalid.0 sed_4.2.1-9 sensible-utils_0.0.6 sysv-rc_2.88dsf-13.10 sysvinit_2.88dsf-13.10 sysvinit-utils_2.88dsf-13.10 tar_1.25-2 tcl8.5_8.5.10-1 tk8.5_8.5.10-1 ttf-dejavu-core_2.33-1 tzdata_2011h-3 ucf_3.0025+nmu2 unzip_6.0-5 util-linux_2.16.2-0 wget_1.11.4-4 whiptail_0.52.11-2.1 x11-common_1:7.6+7 xdg-utils_1.1.0~rc1-2 xz-utils_5.0.0-2 zip_3.0-4 zlib1g_1:1.2.3.4.dfsg-3 zlib1g-dev_1:1.2.3.4.dfsg-3
+Toolchain package versions: binutils_2.21.53.20110823-3+hurd.1 dpkg-dev_1.16.1 g++-4.5_4.5.3-8 g++-4.6_4.6.1-9+hurd.1 gcc-4.4_4.4.6-10 gcc-4.5_4.5.3-8 gcc-4.6_4.6.1-9+hurd.1 gnumach-dev_2:1.3.99.dfsg.git20110609-1 hurd-dev_20110519-3 libc0.3-dev_2.13-21 libstdc++6_4.6.1-9+hurd.1 libstdc++6-4.5-dev_4.5.3-8 libstdc++6-4.6-dev_4.6.1-9+hurd.1
+Package versions: adduser_3.113 apt_0.8.15.8 apt-utils_0.8.15.8 autopoint_0.18.1.1-4 base-files_6.4 base-passwd_3.5.22 bash_4.1-3+hurd.1 binutils_2.21.53.20110823-3+hurd.1 bsd-mailx_8.1.2-0.20100314cvs-1 bsdmainutils_8.2.3 bsdutils_1:2.16.2-0 build-essential_11.5 bzip2_1.0.5-7 ca-certificates_20110502+nmu1 cdbs_0.4.99 coreutils_8.5-1 cpp_4:4.6.1-2 cpp-4.4_4.4.6-10 cpp-4.5_4.5.3-8 cpp-4.6_4.6.1-9+hurd.1 cron_3.0pl1-118 dash_0.5.5.1-7.4 debconf_1.5.40 debfoster_2.6-2 debhelper_8.9.8 debian-archive-keyring_2010.08.28 debian-ports-archive-keyring_2011.01.12 debianutils_4.0.2 deborphan_1.7.28.5 dialog_1.1-20110707-1 diffutils_1:3.0-1 dpatch_2.0.33 dpkg_1.16.0.3 dpkg-dev_1.16.1 e2fslibs_1.42~WIP-2011-07-02-1 e2fsprogs_1.42~WIP-2011-07-02-1 exim4-base_4.76-2+b3 exim4-config_4.76-2 exim4-daemon-light_4.76-2+b3 fakeroot_1.15.1-1 file_5.08-1 findutils_4.4.2-1+b1 fontconfig_2.8.0-3 fontconfig-config_2.8.0-3 g++_4:4.6.0-6 g++-4.5_4.5.3-8 g++-4.6_4.6.1-9+hurd.1 gawk_1:3.1.7.dfsg-5 gcc_4:4.6.1-2 gcc-4.2-base_4.2.4-6+b1 gcc-4.4_4.4.6-10 gcc-4.4-base_4.4.6-10 gcc-4.5_4.5.3-8 gcc-4.5-base_4.5.3-8 gcc-4.6_4.6.1-9+hurd.1 gcc-4.6-base_4.6.1-9+hurd.1 gettext_0.18.1.1-3 gettext-base_0.18.1.1-3 gfortran_4:4.6.0-6 gfortran-4.6_4.6.1-9+hurd.1 git_1:1.7.6.3-1 git-man_1:1.7.6.3-1 gnumach-dev_2:1.3.99.dfsg.git20110609-1 gnupg_1.4.11-3 gpgv_1.4.11-3 grep_2.9-1 groff-base_1.21-6 gzip_1.3.12-9 hostname_3.06 html2text_1.3.2a-15+b1 hurd_20110519-3 hurd-dev_20110519-3 initscripts_2.88dsf-13.10 insserv_1.14.0-2.1 install-info_4.13a.dfsg.1-6 intltool-debian_0.35.0+20060710.1 libacl1_2.2.47-3 libapt-pkg-dev_0.8.15.8 libattr1_1:2.4.46-3 libblas-dev_1.2.20110419-2 libblas3gf_1.2.20110419-2 libblkid1_2.19.1-5 libboost-iostreams1.46.1_1.46.1-7 libbz2-1.0_1.0.5-7 libbz2-dev_1.0.5-7 libc-bin_2.13-21 libc-dev-bin_2.13-21 libc0.3_2.13-21 libc0.3-dev_2.13-21 libc0.3-xen_2.13-21 libcairo2_1.10.2-6.1 libcomerr2_1.42~WIP-2011-10-16-1 libcroco3_0.6.2-1 libcurl3-gnutls_7.21.7-3 libcwidget3_0.5.16-3.1 libdatrie1_0.2.4-3 libdb5.1_5.1.25-11 libdigest-sha1-perl_2.13-2 libdpkg-perl_1.16.1 libelfg0_0.8.13-3 libept-dev_1.0.5 libept1_1.0.5 liberror-perl_0.17-1 libexpat1_2.0.1-7.1 libfontconfig1_2.8.0-3 libfreetype6_2.4.7-2 libgcc1_1:4.6.1-9+hurd.1 libgcrypt11_1.5.0-3 libgdbm3_1.8.3-10 libgfortran3_4.6.1-9+hurd.1 libglib2.0-0_2.28.8-1 libglib2.0-data_2.28.6-1 libgmp10_2:5.0.2+dfsg-2 libgnutls26_2.12.10-2 libgomp1_4.6.1-9+hurd.1 libgpg-error0_1.10-1 libice6_2:1.0.7-2 libidn11_1.22-3 libjpeg8_8c-2 libjpeg8-dev_8c-2 liblapack-dev_3.3.1-1 liblapack3gf_3.3.1-1 libldap-2.4-2_2.4.25-3 liblockfile-bin_1.09-3 liblockfile1_1.09-3 liblzma2_5.1.1alpha+20110809-2 liblzma5_5.1.1alpha+20110809-3 libmagic1_5.08-1 libmpc2_0.9-4 libmpfr4_3.1.0-2 libncurses5_5.9-2 libncurses5-dev_5.9-2 libncursesw5_5.9-2 libp11-kit0_0.7-2 libpam-modules_1.1.3-2 libpam-modules-bin_1.1.3-2 libpam-runtime_1.1.3-2 libpam0g_1.1.3-5 libpango1.0-0_1.29.4-2 libpaper-utils_1.1.24+nmu1 libpaper1_1.1.24+nmu1 libparted0debian1_2.3-3+hurd.1 libpcre3_8.12-4 libpcre3-dev_8.12-4 libpcrecpp0_8.12-4 libpipeline1_1.2.0-3 libpixman-1-0_0.23.8-1 libpng12-0_1.2.46-3 libpng12-dev_1.2.46-3 libpopt0_1.16-1 libpthread-stubs0_0.3-2.1+hurd.1 libpthread-stubs0-dev_0.3-2.1+hurd.1 libquadmath0_4.6.1-9+hurd.1 libreadline-dev_6.2-7 libreadline6_6.2-7 libreadline6-dev_6.2-7 librtmp0_2.4~20110711.gitc28f1bab-1 libsasl2-2_2.1.24~rc1.dfsg1+cvs2011-05-23-6 libsasl2-modules_2.1.24~rc1.dfsg1+cvs2011-05-23-6 libsigc++-2.0-0c2a_2.2.9-1 libslang2_2.2.4-3 libsm6_2:1.2.0-2 libss2_1.42~WIP-2011-07-02-1 libssl0.9.8_0.9.8o-7+b1 libssl1.0.0_1.0.0e-2 libstdc++6_4.6.1-9+hurd.1 libstdc++6-4.5-dev_4.5.3-8 libstdc++6-4.6-dev_4.6.1-9+hurd.1 libsysfs2_2.1.0+repack-1 libtagcoll2-dev_2.0.13-1 libtasn1-3_2.10-1 libtext-charwidth-perl_0.04-6+b1 libtext-wrapi18n-perl_0.06-7 libthai-data_0.1.15-2 libthai0_0.1.15-2+b1 libtiff4_3.9.5-2 libtimedate-perl_1.2000-1 libtinfo-dev_5.9-2 libtinfo5_5.9-2 libunistring0_0.9.3-4 libusb-0.1-4p_2:0.1.12-13+hurd.1 libuuid1_2.19.1-5 libwibble-dev_0.1.26-1 libx11-6_2:1.4.4-2 libx11-data_2:1.4.4-2 libxapian-dev_1.2.7-1 libxapian22_1.2.7-1 libxau6_1:1.0.6-3 libxcb-render0_1.7-3 libxcb-shm0_1.7-3 libxcb1_1.7-3 libxdmcp6_1:1.1.0-3 libxext6_2:1.3.0-3 libxft2_2.2.0-3 libxml2_2.7.8.dfsg-5 libxrender1_1:0.9.6-2 libxss1_1:1.2.1-2 libxt6_1:1.1.1-2 lsb-base_3.2-27 make_3.81-8.1 man-db_2.6.0.2-1 mawk_1.3.3-15 multiarch-support_2.13-10 ncurses-base_5.9-1 ncurses-bin_5.9-2 netbase_4.46 netcat-traditional_1.10-39 openssl_1.0.0e-2 original-awk_2011-05-06-1 passwd_1:4.1.4.2+svn3283-3 patch_2.6.1-2 perl_5.12.4-4 perl-base_5.12.4-4 perl-modules_5.12.4-4 pkg-config_0.26-1 po-debconf_1.0.16+nmu1 procps_1:3.2.8-10 psmisc_22.3-1 r-base-core_2.14.0-1 r-base-dev_2.14.0-1 random-egd_0.5-0+hurd.1 readline-common_6.2-2 sed_4.2.1-9 sensible-utils_0.0.6 sgml-base_1.26+nmu1 shared-mime-info_0.90-1 sudo_1.7.2p7-1 sysv-rc_2.88dsf-13.10 sysvinit_2.88dsf-13.10 sysvinit-utils_2.88dsf-13.10 tar_1.25-2 tcl8.5_8.5.10-1 tk8.5_8.5.10-1 ttf-bitstream-vera_1.10-8 ttf-freefont_20100919-1 type-handling_0.2.23 tzdata_2011h-3 ucf_3.0025+nmu2 unzip_6.0-5 util-linux_2.16.2-0 x11-common_1:7.6+9 xdg-utils_1.1.0~rc1-2 xml-core_0.13 xz-utils_5.0.0-2 zip_3.0-4 zlib1g_1:1.2.3.4.dfsg-3 zlib1g-dev_1:1.2.3.4.dfsg-3
┌──────────────────────────────────────────────────────────────────────────────┐
│ Build │
@@ -507,46 +410,28 @@ Unpack source
─────────────
gpgv: keyblock resource `/home/buildd/.gnupg/trustedkeys.gpg': file open error
-gpgv: Signature made Thu Aug 4 00:12:34 2011 UTC using RSA key ID 2295D502
+gpgv: Signature made Wed Nov 2 05:31:37 2011 UTC using RSA key ID 2295D502
gpgv: Can't check signature: public key not found
-dpkg-source: warning: failed to verify signature on ./r-bioc-biobase_2.12.2-1.dsc
-dpkg-source: info: extracting r-bioc-biobase in r-bioc-biobase-2.12.2
-dpkg-source: info: unpacking r-bioc-biobase_2.12.2.orig.tar.gz
-dpkg-source: info: applying r-bioc-biobase_2.12.2-1.diff.gz
+dpkg-source: warning: failed to verify signature on ./r-bioc-biobase_2.14.0-1.dsc
+dpkg-source: info: extracting r-bioc-biobase in r-bioc-biobase-2.14.0
+dpkg-source: info: unpacking r-bioc-biobase_2.14.0.orig.tar.gz
+dpkg-source: info: applying r-bioc-biobase_2.14.0-1.diff.gz
Check disc space
────────────────
-Sufficient free space for build
-
-User Environment
-────────────────
-
-HOME=/home/buildd
-LOGNAME=buildd
-OLDPWD=/
-PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/X11R6/bin
-PWD=/«PKGBUILDDIR»
-SHELL=/bin/sh
-SUDO_COMMAND=/usr/sbin/chroot /«CHROOT» su buildd -s /bin/sh -c cd '/«PKGBUILDDIR»' && 'env'
-SUDO_GID=106
-SUDO_UID=1005
-SUDO_USER=buildd
-TERM=rxvt-unicode
-USER=buildd
-USERNAME=root
dpkg-buildpackage
─────────────────
-dpkg-buildpackage: export CFLAGS from dpkg-buildflags (origin: vendor): -g -O2
-dpkg-buildpackage: export CPPFLAGS from dpkg-buildflags (origin: vendor):
-dpkg-buildpackage: export CXXFLAGS from dpkg-buildflags (origin: vendor): -g -O2
-dpkg-buildpackage: export FFLAGS from dpkg-buildflags (origin: vendor): -g -O2
-dpkg-buildpackage: export LDFLAGS from dpkg-buildflags (origin: vendor):
+dpkg-buildpackage: dpkg-buildflags (origin: vendor): CFLAGS = -g -O2 -fstack-protector --param=ssp-buffer-size=4 -D_FORTIFY_SOURCE=2 -Wformat -Wformat-security -Werror=format-security
+dpkg-buildpackage: dpkg-buildflags (origin: vendor): CPPFLAGS =
+dpkg-buildpackage: dpkg-buildflags (origin: vendor): CXXFLAGS = -g -O2 -fstack-protector --param=ssp-buffer-size=4 -D_FORTIFY_SOURCE=2 -Wformat -Wformat-security -Werror=format-security
+dpkg-buildpackage: dpkg-buildflags (origin: vendor): FFLAGS = -g -O2
+dpkg-buildpackage: dpkg-buildflags (origin: vendor): LDFLAGS = -Wl,-z,relro
dpkg-buildpackage: source package r-bioc-biobase
-dpkg-buildpackage: source version 2.12.2-1
- dpkg-source --before-build r-bioc-biobase-2.12.2
+dpkg-buildpackage: source version 2.14.0-1
+ dpkg-source --before-build r-bioc-biobase-2.14.0
dpkg-buildpackage: host architecture hurd-i386
/usr/bin/fakeroot debian/rules clean
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
@@ -554,9 +439,9 @@ test -x debian/rules
dh_testroot
/usr/bin/make -f debian/rules reverse-config
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
-make[1]: Entering directory `/«PKGBUILDDIR»'
+make[1]: Entering directory `/build/buildd-r-bioc-biobase_2.14.0-1-hurd-i386-rAedhs/r-bioc-biobase-2.14.0'
make[1]: Nothing to be done for `reverse-config'.
-make[1]: Leaving directory `/«PKGBUILDDIR»'
+make[1]: Leaving directory `/build/buildd-r-bioc-biobase_2.14.0-1-hurd-i386-rAedhs/r-bioc-biobase-2.14.0'
if [ "reverse-patches" = "reverse-patches" ]; then rm -f debian/stamp-patched; fi
patches:
if [ "reverse-patches" != "reverse-patches" ]; then touch debian/stamp-patched; fi
@@ -570,17 +455,18 @@ dh_clean
if test -d src; then \
find src -regex ".*\..*o" | \
xargs --no-run-if-empty -r rm; \
+ debian/rules build
fi
rm -f config.log config.status
- debian/rules build
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
+/usr/share/cdbs/1/rules/buildcore.mk:109: WARNING: DEB_DH_BUILDDEB_ARGS is a deprecated variable
test -x debian/rules
mkdir -p "."
/usr/bin/make -f debian/rules reverse-config
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
-make[1]: Entering directory `/«PKGBUILDDIR»'
+make[1]: Entering directory `/build/buildd-r-bioc-biobase_2.14.0-1-hurd-i386-rAedhs/r-bioc-biobase-2.14.0'
make[1]: Nothing to be done for `reverse-config'.
-make[1]: Leaving directory `/«PKGBUILDDIR»'
+make[1]: Leaving directory `/build/buildd-r-bioc-biobase_2.14.0-1-hurd-i386-rAedhs/r-bioc-biobase-2.14.0'
if [ "debian/stamp-patched" = "reverse-patches" ]; then rm -f debian/stamp-patched; fi
patches:
if [ "debian/stamp-patched" != "reverse-patches" ]; then touch debian/stamp-patched; fi
@@ -589,39 +475,40 @@ if [ "debian/stamp-patched" != "reverse-patches" ] ; then \
fi
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
/usr/bin/fakeroot debian/rules binary-arch
-make[1]: Entering directory `/«PKGBUILDDIR»'
+make[1]: Entering directory `/build/buildd-r-bioc-biobase_2.14.0-1-hurd-i386-rAedhs/r-bioc-biobase-2.14.0'
make[1]: Nothing to be done for `update-config'.
-make[1]: Leaving directory `/«PKGBUILDDIR»'
+make[1]: Leaving directory `/build/buildd-r-bioc-biobase_2.14.0-1-hurd-i386-rAedhs/r-bioc-biobase-2.14.0'
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
test -x debian/rules
dh_testroot
dh_prep
dh_installdirs -A
mkdir -p "."
+/usr/share/cdbs/1/rules/buildcore.mk:109: WARNING: DEB_DH_BUILDDEB_ARGS is a deprecated variable
dh_installdirs usr/lib/R/site-library
if test -f /usr/bin/xvfb-run; then \
xvfb-run -a \
- R CMD INSTALL -l /«PKGBUILDDIR»/debian/r-bioc-biobase/usr/lib/R/site-library --clean \
+ R CMD INSTALL -l /build/buildd-r-bioc-biobase_2.14.0-1-hurd-i386-rAedhs/r-bioc-biobase-2.14.0/debian/r-bioc-biobase/usr/lib/R/site-library --clean \
. ; \
else \
- R CMD INSTALL -l /«PKGBUILDDIR»/debian/r-bioc-biobase/usr/lib/R/site-library \
+ R CMD INSTALL -l /build/buildd-r-bioc-biobase_2.14.0-1-hurd-i386-rAedhs/r-bioc-biobase-2.14.0/debian/r-bioc-biobase/usr/lib/R/site-library \
--clean . ;\
fi
* installing *source* package 'Biobase' ...
** libs
-make[1]: Entering directory `/«PKGBUILDDIR»/src'
-gcc -I/usr/share/R/include -fpic -std=gnu99 -O3 -pipe -g -c Rinit.c -o Rinit.o
-gcc -I/usr/share/R/include -fpic -std=gnu99 -O3 -pipe -g -c anyMissing.c -o anyMissing.o
-gcc -I/usr/share/R/include -fpic -std=gnu99 -O3 -pipe -g -c envir.c -o envir.o
-gcc -I/usr/share/R/include -fpic -std=gnu99 -O3 -pipe -g -c matchpt.c -o matchpt.o
-gcc -I/usr/share/R/include -fpic -std=gnu99 -O3 -pipe -g -c rowMedians.c -o rowMedians.o
-gcc -I/usr/share/R/include -fpic -std=gnu99 -O3 -pipe -g -c sublist_extract.c -o sublist_extract.o
-gcc -shared -o Biobase.so Rinit.o anyMissing.o envir.o matchpt.o rowMedians.o sublist_extract.o -L/usr/lib/R/lib -lR
-make[1]: Leaving directory `/«PKGBUILDDIR»/src'
-make[1]: Entering directory `/«PKGBUILDDIR»/src'
-installing to /«PKGBUILDDIR»/debian/r-bioc-biobase/usr/lib/R/site-library/Biobase/libs
-make[1]: Leaving directory `/«PKGBUILDDIR»/src'
+make[1]: Entering directory `/build/buildd-r-bioc-biobase_2.14.0-1-hurd-i386-rAedhs/r-bioc-biobase-2.14.0/src'
+gcc -std=gnu99 -I/usr/share/R/include -fpic -O3 -pipe -g -c Rinit.c -o Rinit.o
+gcc -std=gnu99 -I/usr/share/R/include -fpic -O3 -pipe -g -c anyMissing.c -o anyMissing.o
+gcc -std=gnu99 -I/usr/share/R/include -fpic -O3 -pipe -g -c envir.c -o envir.o
+gcc -std=gnu99 -I/usr/share/R/include -fpic -O3 -pipe -g -c matchpt.c -o matchpt.o
+gcc -std=gnu99 -I/usr/share/R/include -fpic -O3 -pipe -g -c rowMedians.c -o rowMedians.o
+gcc -std=gnu99 -I/usr/share/R/include -fpic -O3 -pipe -g -c sublist_extract.c -o sublist_extract.o
+gcc -std=gnu99 -shared -o Biobase.so Rinit.o anyMissing.o envir.o matchpt.o rowMedians.o sublist_extract.o -L/usr/lib/R/lib -lR
+make[1]: Leaving directory `/build/buildd-r-bioc-biobase_2.14.0-1-hurd-i386-rAedhs/r-bioc-biobase-2.14.0/src'
+make[1]: Entering directory `/build/buildd-r-bioc-biobase_2.14.0-1-hurd-i386-rAedhs/r-bioc-biobase-2.14.0/src'
+installing to /build/buildd-r-bioc-biobase_2.14.0-1-hurd-i386-rAedhs/r-bioc-biobase-2.14.0/debian/r-bioc-biobase/usr/lib/R/site-library/Biobase/libs
** R
+make[1]: Leaving directory `/build/buildd-r-bioc-biobase_2.14.0-1-hurd-i386-rAedhs/r-bioc-biobase-2.14.0/src'
** data
** inst
** preparing package for lazy loading
@@ -629,19 +516,26 @@ make[1]: Leaving directory `/«PKGBUILDDIR»/src'
*** installing help indices
** building package indices ...
** testing if installed package can be loaded
+*** tangling vignette sources ...
+ 'BiobaseDevelopment.Rnw'
+ 'Bioconductor.Rnw'
+ 'ExpressionSetIntroduction.Rnw'
+ 'HowTo.Rnw'
+ 'Qviews.Rnw'
+ 'esApply.Rnw'
* DONE (Biobase)
-rm -vf /«PKGBUILDDIR»/debian/r-bioc-biobase/usr/lib/R/site-library/R.css \
- /«PKGBUILDDIR»/debian/r-bioc-biobase/usr/lib/R/site-library/Biobase/COPYING \
- /«PKGBUILDDIR»/debian/r-bioc-biobase/usr/lib/R/site-library/Biobase/LICENSE.txt
+rm -vf /build/buildd-r-bioc-biobase_2.14.0-1-hurd-i386-rAedhs/r-bioc-biobase-2.14.0/debian/r-bioc-biobase/usr/lib/R/site-library/R.css \
+ /build/buildd-r-bioc-biobase_2.14.0-1-hurd-i386-rAedhs/r-bioc-biobase-2.14.0/debian/r-bioc-biobase/usr/lib/R/site-library/Biobase/COPYING \
+ /build/buildd-r-bioc-biobase_2.14.0-1-hurd-i386-rAedhs/r-bioc-biobase-2.14.0/debian/r-bioc-biobase/usr/lib/R/site-library/Biobase/LICENSE.txt
if test -f debian/overrides; then \
- install -d /«PKGBUILDDIR»/debian/r-bioc-biobase/usr/share/lintian/overrides ; \
+ install -d /build/buildd-r-bioc-biobase_2.14.0-1-hurd-i386-rAedhs/r-bioc-biobase-2.14.0/debian/r-bioc-biobase/usr/share/lintian/overrides ; \
install -m 0644 debian/overrides \
- /«PKGBUILDDIR»/debian/r-bioc-biobase/usr/share/lintian/overrides/r-bioc-biobase; \
+ /build/buildd-r-bioc-biobase_2.14.0-1-hurd-i386-rAedhs/r-bioc-biobase-2.14.0/debian/r-bioc-biobase/usr/share/lintian/overrides/r-bioc-biobase; \
fi
Adding cdbs dependencies to debian/r-bioc-biobase.substvars
dh_installdirs -pr-bioc-biobase
-echo "R:Depends=r-base-core (>= 2.13.1~)" >> debian/r-bioc-biobase.substvars
+echo "R:Depends=r-base-core (>= 2.14.0~)" >> debian/r-bioc-biobase.substvars
dh_installdocs -pr-bioc-biobase ./NEWS
dh_installexamples -pr-bioc-biobase
dh_installman -pr-bioc-biobase
@@ -672,70 +566,62 @@ dh_perl -pr-bioc-biobase
dh_shlibdeps -pr-bioc-biobase
dh_gencontrol -pr-bioc-biobase
dh_md5sums -pr-bioc-biobase
-dh_builddeb -pr-bioc-biobase
-dpkg-deb: building package `r-bioc-biobase' in `../r-bioc-biobase_2.12.2-1_hurd-i386.deb'.
- dpkg-genchanges -B -mDebian GNU/Hurd Build Daemon <buildd_hurd-i386-rossini at buildd.debian.org> >../r-bioc-biobase_2.12.2-1_hurd-i386.changes
+dh_builddeb -pr-bioc-biobase -- -Z xz
+dpkg-deb: building package `r-bioc-biobase' in `../r-bioc-biobase_2.14.0-1_hurd-i386.deb'.
+ dpkg-genchanges -B -mDebian GNU/Hurd Build Daemon <buildd_hurd-i386-bach at buildd.debian.org> >../r-bioc-biobase_2.14.0-1_hurd-i386.changes
dpkg-genchanges: arch-specific upload - not including arch-independent packages
dpkg-genchanges: binary-only upload - not including any source code
- dpkg-source --after-build r-bioc-biobase-2.12.2
+ dpkg-source --after-build r-bioc-biobase-2.14.0
dpkg-buildpackage: binary only upload (no source included)
────────────────────────────────────────────────────────────────────────────────
-Build finished at 20110804-0145
-
-Finished
-────────
-
-I: Built successfully
-
-┌──────────────────────────────────────────────────────────────────────────────┐
-│ Changes │
-└──────────────────────────────────────────────────────────────────────────────┘
-
-
-r-bioc-biobase_2.12.2-1_hurd-i386.changes:
-──────────────────────────────────────────
+Build finished at 20111102-0612
+r-bioc-biobase_2.14.0-1_hurd-i386.changes:
Format: 1.8
-Date: Thu, 04 Aug 2011 08:58:03 +0900
+Date: Wed, 02 Nov 2011 13:52:04 +0900
Source: r-bioc-biobase
Binary: r-bioc-biobase
Architecture: hurd-i386
-Version: 2.12.2-1
-Distribution: sid
+Version: 2.14.0-1
+Distribution: unstable
Urgency: low
-Maintainer: Debian GNU/Hurd Build Daemon <buildd_hurd-i386-rossini at buildd.debian.org>
+Maintainer: Debian GNU/Hurd Build Daemon <buildd_hurd-i386-bach at buildd.debian.org>
Changed-By: Charles Plessy <plessy at debian.org>
Description:
r-bioc-biobase - base functions for Bioconductor
Changes:
- r-bioc-biobase (2.12.2-1) unstable; urgency=low
+ r-bioc-biobase (2.14.0-1) unstable; urgency=low
.
- * New upstream release.
+ [cb6b786] Bioconductor release 2.9.
+ [d70e490] Build-Depend on R >= 2.10 according to DESCRIPTION.
+ [ae99e35] Include 7 digits of the commit id in the changelog entry.
+ [33b5d47] Compress binary package with xz.
Checksums-Sha1:
- 685839442008be66087672619a14f579d5ec87cc 2664168 r-bioc-biobase_2.12.2-1_hurd-i386.deb
+ 6889f11366f37150cbcb8c3916f79dfacee5bac3 2319230 r-bioc-biobase_2.14.0-1_hurd-i386.deb
Checksums-Sha256:
- 02e40f3794c0064d20a721cdf6853bcbc5cdcb8f28d724b2aa6224d49c21f365 2664168 r-bioc-biobase_2.12.2-1_hurd-i386.deb
+ 447800c2139aa13ff8fd954257b5aeff75341d324e2f0cb0b76151155880bb74 2319230 r-bioc-biobase_2.14.0-1_hurd-i386.deb
Files:
- 2d842b95182ade50db5c6bbdc7210ad0 2664168 gnu-r optional r-bioc-biobase_2.12.2-1_hurd-i386.deb
+ a855be250065ad4f60d6aba3d6e366bb 2319230 gnu-r optional r-bioc-biobase_2.14.0-1_hurd-i386.deb
┌──────────────────────────────────────────────────────────────────────────────┐
│ Package contents │
└──────────────────────────────────────────────────────────────────────────────┘
-r-bioc-biobase_2.12.2-1_hurd-i386.deb
+r-bioc-biobase_2.14.0-1_hurd-i386.deb
─────────────────────────────────────
new debian package, version 2.0.
- size 2664168 bytes: control archive= 4948 bytes.
- 1194 bytes, 25 lines control
+ size 2319230 bytes: control archive= 4961 bytes.
+ 1223 bytes, 26 lines control
13314 bytes, 141 lines md5sums
Package: r-bioc-biobase
- Version: 2.12.2-1
+ Version: 2.14.0-1
Architecture: hurd-i386
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
- Installed-Size: 3792
- Depends: libc0.3 (>= 2.13), r-base-core (>= 2.13.1~)
+ Installed-Size: 3067
+ Pre-Depends: dpkg (>= 1.15.6)
+ Depends: libc0.3 (>= 2.3), r-base-core (>= 2.14.0~)
Section: gnu-r
Priority: optional
Homepage: http://www.bioconductor.org
@@ -756,269 +642,238 @@ r-bioc-biobase_2.12.2-1_hurd-i386.deb
unofficial auto-generated Bioconductor packages for Debian and Ubuntu systems,
that are prepared by members of the Debian Med team.
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-drwxr-xr-x root/root 0 2011-08-04 01:42 ./usr/lib/R/
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-drwxr-xr-x root/root 0 2011-08-04 01:43 ./usr/lib/R/site-library/Biobase/
--rw-r--r-- root/root 2870 2011-08-04 01:42 ./usr/lib/R/site-library/Biobase/NAMESPACE
--rw-r--r-- root/root 3988 2011-08-04 01:42 ./usr/lib/R/site-library/Biobase/NEWS
--rw-r--r-- root/root 1253 2011-08-04 01:42 ./usr/lib/R/site-library/Biobase/DESCRIPTION
-drwxr-xr-x root/root 0 2011-08-04 01:43 ./usr/lib/R/site-library/Biobase/Meta/
--rw-r--r-- root/root 1018 2011-08-04 01:42 ./usr/lib/R/site-library/Biobase/Meta/package.rds
--rw-r--r-- root/root 5637 2011-08-04 01:43 ./usr/lib/R/site-library/Biobase/Meta/Rd.rds
--rw-r--r-- root/root 5633 2011-08-04 01:43 ./usr/lib/R/site-library/Biobase/Meta/hsearch.rds
--rw-r--r-- root/root 3431 2011-08-04 01:43 ./usr/lib/R/site-library/Biobase/Meta/links.rds
--rw-r--r-- root/root 324 2011-08-04 01:43 ./usr/lib/R/site-library/Biobase/Meta/data.rds
--rw-r--r-- root/root 475 2011-08-04 01:43 ./usr/lib/R/site-library/Biobase/Meta/vignette.rds
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--rw-r--r-- root/root 18460 2011-08-04 01:44 ./usr/lib/R/site-library/Biobase/libs/Biobase.so
-drwxr-xr-x root/root 0 2011-08-04 01:43 ./usr/lib/R/site-library/Biobase/R/
--rw-r--r-- root/root 384 2011-08-04 01:43 ./usr/lib/R/site-library/Biobase/R/Biobase
--rw-r--r-- root/root 363959 2011-08-04 01:43 ./usr/lib/R/site-library/Biobase/R/Biobase.rdb
--rw-r--r-- root/root 8704 2011-08-04 01:43 ./usr/lib/R/site-library/Biobase/R/Biobase.rdx
-drwxr-xr-x root/root 0 2011-08-04 01:43 ./usr/lib/R/site-library/Biobase/data/
--rw-r--r-- root/root 345999 2011-08-04 01:43 ./usr/lib/R/site-library/Biobase/data/SW.rda
--rw-r--r-- root/root 1556 2011-08-04 01:43 ./usr/lib/R/site-library/Biobase/data/aaMap.R
--rw-r--r-- root/root 501 2011-08-04 01:43 ./usr/lib/R/site-library/Biobase/data/geneCov.R
--rw-r--r-- root/root 435 2011-08-04 01:43 ./usr/lib/R/site-library/Biobase/data/geneCovariate.rda
--rw-r--r-- root/root 125627 2011-08-04 01:43 ./usr/lib/R/site-library/Biobase/data/geneData.R
--rw-r--r-- root/root 2032 2011-08-04 01:43 ./usr/lib/R/site-library/Biobase/data/reporter.rda
--rw-r--r-- root/root 277973 2011-08-04 01:43 ./usr/lib/R/site-library/Biobase/data/sample.ExpressionSet.rda
--rw-r--r-- root/root 25217 2011-08-04 01:43 ./usr/lib/R/site-library/Biobase/data/sample.MultiSet.rda
--rw-r--r-- root/root 107 2011-08-04 01:43 ./usr/lib/R/site-library/Biobase/data/sample.eSet.R
--rw-r--r-- root/root 117 2011-08-04 01:43 ./usr/lib/R/site-library/Biobase/data/sample.exprSet.1.R
--rw-r--r-- root/root 115 2011-08-04 01:43 ./usr/lib/R/site-library/Biobase/data/sample.exprSet.R
--rw-r--r-- root/root 28463 2011-08-04 01:43 ./usr/lib/R/site-library/Biobase/data/seD.rda
-drwxr-xr-x root/root 0 2011-08-04 01:43 ./usr/lib/R/site-library/Biobase/Code/
-drwxr-xr-x root/root 0 2011-08-04 01:43 ./usr/lib/R/site-library/Biobase/Code/R/
--rw-r--r-- root/root 91 2011-08-04 01:43 ./usr/lib/R/site-library/Biobase/Code/R/get at PKGNAME@.R
-drwxr-xr-x root/root 0 2011-08-04 01:43 ./usr/lib/R/site-library/Biobase/Code/man/
--rw-r--r-- root/root 487 2011-08-04 01:43 ./usr/lib/R/site-library/Biobase/Code/man/@PKGNAME at .Rd
--rw-r--r-- root/root 350 2011-08-04 01:43 ./usr/lib/R/site-library/Biobase/Code/man/get at PKGNAME@.Rd
--rw-r--r-- root/root 201 2011-08-04 01:43 ./usr/lib/R/site-library/Biobase/Code/DESCRIPTION
-drwxr-xr-x root/root 0 2011-08-04 01:43 ./usr/lib/R/site-library/Biobase/ExpressionSet/
-drwxr-xr-x root/root 0 2011-08-04 01:43 ./usr/lib/R/site-library/Biobase/ExpressionSet/man/
--rw-r--r-- root/root 180 2011-08-04 01:43 ./usr/lib/R/site-library/Biobase/ExpressionSet/man/@PKGNAME at .Rd
--rw-r--r-- root/root 212 2011-08-04 01:43 ./usr/lib/R/site-library/Biobase/ExpressionSet/DESCRIPTION
-drwxr-xr-x root/root 0 2011-08-04 01:43 ./usr/lib/R/site-library/Biobase/UnitTests/
-drwxr-xr-x root/root 0 2011-08-04 01:43 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/
-drwxr-xr-x root/root 0 2011-08-04 01:43 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/1.8/
--rw-r--r-- root/root 939 2011-08-04 01:43 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/1.8/AnnotatedDataFrame.Rda
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+-rw-r--r-- root/root 14948 2011-11-02 06:10 ./usr/lib/R/site-library/Biobase/help/AnIndex
+-rw-r--r-- root/root 3457 2011-11-02 06:10 ./usr/lib/R/site-library/Biobase/help/aliases.rds
+drwxr-xr-x root/root 0 2011-11-02 06:10 ./usr/lib/R/site-library/Biobase/html/
+-rw-r--r-- root/root 53325 2011-11-02 06:10 ./usr/lib/R/site-library/Biobase/html/00Index.html
+-rw-r--r-- root/root 1179 2011-11-02 06:10 ./usr/lib/R/site-library/Biobase/html/R.css
+-rw-r--r-- root/root 6718 2011-11-02 06:10 ./usr/lib/R/site-library/Biobase/INDEX
+drwxr-xr-x root/root 0 2011-11-02 06:11 ./usr/share/
+drwxr-xr-x root/root 0 2011-11-02 06:11 ./usr/share/doc/
+drwxr-xr-x root/root 0 2011-11-02 06:11 ./usr/share/doc/r-bioc-biobase/
+-rw-r--r-- root/root 392 2011-11-02 06:08 ./usr/share/doc/r-bioc-biobase/README.Debian
+-rw-r--r-- root/root 10574 2011-11-02 06:08 ./usr/share/doc/r-bioc-biobase/copyright
+-rw-r--r-- root/root 1380 2011-10-31 23:32 ./usr/share/doc/r-bioc-biobase/NEWS.gz
+-rw-r--r-- root/root 380 2011-11-02 06:08 ./usr/share/doc/r-bioc-biobase/changelog.Debian.gz
┌──────────────────────────────────────────────────────────────────────────────┐
-│ Post Build │
+│ Finished │
└──────────────────────────────────────────────────────────────────────────────┘
+Built successfully
+────────────────────────────────────────────────────────────────────────────────
┌──────────────────────────────────────────────────────────────────────────────┐
-│ Cleanup │
+│ Post Build │
└──────────────────────────────────────────────────────────────────────────────┘
-Purging /«BUILDDIR»
+Purging /home/buildd/build/chroot-unstable/build/buildd-r-bioc-biobase_2.14.0-1-hurd-i386-rAedhs
Reading package lists...
Building dependency tree...
Reading state information...
-The following package was automatically installed and is no longer required:
- libboost-iostreams1.42.0
+The following packages were automatically installed and are no longer required:
+ libcwidget3 libsigc++-2.0-0c2a
Use 'apt-get autoremove' to remove them.
-0 upgraded, 0 newly installed, 0 to remove and 45 not upgraded.
+0 upgraded, 0 newly installed, 0 to remove and 70 not upgraded.
Reading package lists...
Building dependency tree...
Reading state information...
-The following package was automatically installed and is no longer required:
- libboost-iostreams1.42.0
+The following packages were automatically installed and are no longer required:
+ libcwidget3 libsigc++-2.0-0c2a
Use 'apt-get autoremove' to remove them.
The following packages will be REMOVED:
- cdbs* debhelper* dpatch* file* fontconfig* fontconfig-config* gettext*
- gettext-base* html2text* intltool-debian* libblas-dev* libblas3gf*
- libbz2-dev* libcairo2* libcroco3* libdatrie1* libexpat1* libfontconfig1*
- libfreetype6* libglib2.0-0* libice6* libjpeg62* libjpeg8* libjpeg8-dev*
- liblapack-dev* liblapack3gf* libmagic1* libncurses5-dev* libpango1.0-0*
- libpaper-utils* libpaper1* libpcre3-dev* libpcrecpp0* libpixman-1-0*
- libpng12-dev* libreadline-dev* libreadline6-dev* libsm6* libthai-data*
- libthai0* libtiff4* libunistring0* libx11-6* libx11-data* libxau6*
- libxcb-render0* libxcb-shm0* libxcb1* libxdmcp6* libxext6* libxft2* libxml2*
- libxrender1* libxss1* libxt6* po-debconf* r-base-core* r-base-dev*
- sbuild-build-depends-core-dummy* sbuild-build-depends-r-bioc-biobase-dummy*
- tcl8.5* tk8.5* ttf-dejavu-core* ucf* unzip* x11-common* xdg-utils* zip*
- zlib1g-dev*
-0 upgraded, 0 newly installed, 69 to remove and 45 not upgraded.
-After this operation, 99.4 MB disk space will be freed.
-(Reading database ... 15954 files and directories currently installed.)
-Removing sbuild-build-depends-r-bioc-biobase-dummy ...
+ cdbs* dpatch* libblas-dev* libblas3gf* libbz2-dev* libcairo2* libdatrie1*
+ libice6* libjpeg8* libjpeg8-dev* liblapack-dev* liblapack3gf* liblzma5*
+ libncurses5-dev* libpango1.0-0* libpaper-utils* libpaper1* libpcre3-dev*
+ libpcrecpp0* libpixman-1-0* libpng12-dev* libreadline-dev* libreadline6-dev*
+ libsm6* libthai-data* libthai0* libtiff4* libtinfo-dev* libx11-6*
+ libx11-data* libxau6* libxcb-render0* libxcb-shm0* libxcb1* libxdmcp6*
+ libxext6* libxft2* libxrender1* libxss1* libxt6* r-base-core* r-base-dev*
+ tcl8.5* tk8.5* unzip* x11-common* xdg-utils* zip*
+0 upgraded, 0 newly installed, 48 to remove and 70 not upgraded.
+After this operation, 74.6 MB disk space will be freed.
+(Reading database ... 19382 files and directories currently installed.)
Removing r-base-dev ...
Removing cdbs ...
-Removing debhelper ...
Removing dpatch ...
Purging configuration files for dpatch ...
-Removing file ...
-Purging configuration files for file ...
+Removing liblapack-dev ...
+Removing libblas-dev ...
Removing r-base-core ...
Purging configuration files for r-base-core ...
dpkg: warning: while removing r-base-core, directory '/etc/R' not empty so not removed.
-Removing libpango1.0-0 ...
-Purging configuration files for libpango1.0-0 ...
-Removing fontconfig ...
-Purging configuration files for fontconfig ...
-Removing tk8.5 ...
-Purging configuration files for tk8.5 ...
-Removing libxft2 ...
-Purging configuration files for libxft2 ...
-Removing libcairo2 ...
-Purging configuration files for libcairo2 ...
-Removing libfontconfig1 ...
-Purging configuration files for libfontconfig1 ...
-Removing fontconfig-config ...
-Purging configuration files for fontconfig-config ...
-Removing po-debconf ...
-Removing intltool-debian ...
-Removing gettext ...
-Removing gettext-base ...
-Removing html2text ...
-Purging configuration files for html2text ...
-Removing liblapack-dev ...
-Removing libblas-dev ...
Removing liblapack3gf ...
Purging configuration files for liblapack3gf ...
Removing libblas3gf ...
Purging configuration files for libblas3gf ...
Removing libbz2-dev ...
-Removing libcroco3 ...
-Purging configuration files for libcroco3 ...
+Removing libpango1.0-0 ...
+Purging configuration files for libpango1.0-0 ...
+Removing libcairo2 ...
+Purging configuration files for libcairo2 ...
Removing libthai0 ...
Purging configuration files for libthai0 ...
Removing libdatrie1 ...
Purging configuration files for libdatrie1 ...
-Removing libexpat1 ...
-Purging configuration files for libexpat1 ...
-Removing libfreetype6 ...
-Purging configuration files for libfreetype6 ...
-Removing libglib2.0-0 ...
-Purging configuration files for libglib2.0-0 ...
Removing libxt6 ...
Purging configuration files for libxt6 ...
Removing libsm6 ...
@@ -1027,13 +882,10 @@ Removing libice6 ...
Purging configuration files for libice6 ...
Removing libtiff4 ...
Purging configuration files for libtiff4 ...
-Removing libjpeg62 ...
Removing libjpeg8-dev ...
Removing libjpeg8 ...
-Removing libmagic1 ...
-Purging configuration files for libmagic1 ...
-Removing libreadline-dev ...
-Removing libreadline6-dev ...
+Removing liblzma5 ...
+Purging configuration files for liblzma5 ...
Removing libncurses5-dev ...
Removing libpaper-utils ...
Removing libpaper1 ...
@@ -1044,9 +896,14 @@ Purging configuration files for libpcrecpp0 ...
Removing libpixman-1-0 ...
Purging configuration files for libpixman-1-0 ...
Removing libpng12-dev ...
+Removing libreadline-dev ...
+Removing libreadline6-dev ...
Removing libthai-data ...
-Removing libunistring0 ...
-Purging configuration files for libunistring0 ...
+Removing libtinfo-dev ...
+Removing tk8.5 ...
+Purging configuration files for tk8.5 ...
+Removing libxft2 ...
+Purging configuration files for libxft2 ...
Removing libxss1 ...
Purging configuration files for libxss1 ...
Removing libxrender1 ...
@@ -1066,23 +923,21 @@ Removing libxau6 ...
Purging configuration files for libxau6 ...
Removing libxdmcp6 ...
Purging configuration files for libxdmcp6 ...
-Removing libxml2 ...
-Purging configuration files for libxml2 ...
-Removing sbuild-build-depends-core-dummy ...
Removing tcl8.5 ...
Purging configuration files for tcl8.5 ...
-Removing ttf-dejavu-core ...
-Removing ucf ...
-Purging configuration files for ucf ...
Removing unzip ...
Purging configuration files for unzip ...
Removing x11-common ...
All runlevel operations denied by policy
invoke-rc.d: policy-rc.d denied execution of stop.
Purging configuration files for x11-common ...
+insserv: warning: script 'K01random-egd' missing LSB tags and overrides
+insserv: warning: script 'random-egd' missing LSB tags and overrides
+insserv: warning: script 'K01random-egd' missing LSB tags and overrides
+insserv: warning: script 'random-egd' missing LSB tags and overrides
+dpkg: warning: while removing x11-common, directory '/etc/X11' not empty so not removed.
Removing xdg-utils ...
Removing zip ...
-Removing zlib1g-dev ...
Processing triggers for man-db ...
Processing triggers for install-info ...
@@ -1091,17 +946,18 @@ Processing triggers for install-info ...
└──────────────────────────────────────────────────────────────────────────────┘
Architecture: hurd-i386
-Build-Space: 10084
-Build-Time: 331
-Distribution: sid
-Install-Time: 392
-Job: r-bioc-biobase_2.12.2-1
+Build-Space: 9144
+Build-Time: 272
+Distribution: unstable
+Install-Time: 196
+Job: r-bioc-biobase_2.14.0-1
Package: r-bioc-biobase
-Package-Time: 995
-Source-Version: 2.12.2-1
-Space: 10084
+Package-Time: 637
+Source-Version: 2.14.0-1
+Space: 9144
Status: successful
-Version: 2.12.2-1
+Version: 2.14.0-1
────────────────────────────────────────────────────────────────────────────────
-Finished at 20110804-0145
-Build needed 00:16:35, 10084k disc space
+Finished at 20111102-0612
+Build needed 00:10:37, 9144k disc space
+
diff --git a/i386.log b/i386.log
index ec6762e..81115c8 100644
--- a/i386.log
+++ b/i386.log
@@ -1,68 +1,68 @@
-From buildd at biber.debian.org Thu Aug 04 00:26:49 2011
+From buildd at biber.debian.org Wed Nov 02 06:03:13 2011
Return-path: <buildd at biber.debian.org>
-Received: from kokkonen.debian.org ([2001:41b8:202:deb:1a1a:0:52c3:4b61])
+Received: from merikanto.debian.org ([2001:858:2:2:216:35ff:fec4:a49a])
from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
- CN=kokkonen.debian.org,
- EMAIL=hostmaster at kokkonen.debian.org (verified)
+ CN=merikanto.debian.org,
+ EMAIL=hostmaster at merikanto.debian.org (verified)
by grieg.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
(Exim 4.72) (envelope-from <buildd at biber.debian.org>)
- id 1Qollw-0004Kp-Uo
- for logs at buildd.debian.org; Thu, 04 Aug 2011 00:26:49 +0000
+ id 1RLTur-0007Pn-Ku
+ for logs at buildd.debian.org; Wed, 02 Nov 2011 06:03:13 +0000
Received: from biber.debian.org ([2001:648:2ffc:deb:214:22ff:feb2:1268])
from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
CN=biber.debian.org, EMAIL=hostmaster at biber.debian.org (verified)
- by kokkonen.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
+ by merikanto.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
(Exim 4.72) (envelope-from <buildd at biber.debian.org>)
- id 1Qollw-0004Ip-4s; Thu, 04 Aug 2011 00:26:48 +0000
+ id 1RLTur-0007fJ-1j; Wed, 02 Nov 2011 06:03:13 +0000
Received: from buildd by biber.debian.org with local (Exim 4.72)
(envelope-from <buildd at biber.debian.org>)
- id 1Qollu-0003JE-Gl; Thu, 04 Aug 2011 00:26:46 +0000
-Message-Id: <E1Qollu-0003JE-Gl at biber.debian.org>
+ id 1RLTup-0002ji-KR; Wed, 02 Nov 2011 06:03:11 +0000
+Message-Id: <E1RLTup-0002ji-KR at biber.debian.org>
MIME-Version: 1.0
Content-Transfer-Encoding: binary
X-Mailer: MIME::Lite 3.027 (F2.77; B3.08; Q3.08)
-Date: Thu, 4 Aug 2011 00:26:46 +0000
+Date: Wed, 2 Nov 2011 06:03:11 +0000
From: buildd on biber <buildd at biber.debian.org>
To: kurt at roeckx.be,logs at buildd.debian.org
-Subject: Log for successful build of r-bioc-biobase_2.12.2-1 on i386 (dist=sid)
+Subject: Log for successful build of r-bioc-biobase_2.14.0-1 on i386 (dist=sid)
Key-Id: E4786BDC
Delivered-To: logs at buildd.debian.org
sbuild (Debian sbuild) 0.61.0 (23 Feb 2011) on biber.debian.org
╔══════════════════════════════════════════════════════════════════════════════╗
-║ r-bioc-biobase 2.12.2-1 (i386) 04 Aug 2011 00:23 ║
+║ r-bioc-biobase 2.14.0-1 (i386) 02 Nov 2011 06:00 ║
╚══════════════════════════════════════════════════════════════════════════════╝
Package: r-bioc-biobase
-Version: 2.12.2-1
-Source Version: 2.12.2-1
+Version: 2.14.0-1
+Source Version: 2.14.0-1
Architecture: i386
Get:1 http://ftp.gr.debian.org unstable InRelease [146 kB]
-Get:2 http://ftp.gr.debian.org unstable/main Sources [5403 kB]
-Get:3 http://incoming.debian.org unstable InRelease [146 kB]
-Get:4 http://ftp.gr.debian.org unstable/contrib Sources [51.3 kB]
-Get:5 http://ftp.gr.debian.org unstable/non-free Sources [96.3 kB]
-Get:6 http://ftp.gr.debian.org unstable/main i386 Packages [7570 kB]
+Get:2 http://incoming.debian.org unstable InRelease [146 kB]
+Get:3 http://ftp.gr.debian.org unstable/main Sources [5884 kB]
+Get:4 http://ftp.gr.debian.org unstable/contrib Sources [56.9 kB]
+Get:5 http://ftp.gr.debian.org unstable/non-free Sources [104 kB]
+Get:6 http://ftp.gr.debian.org unstable/main i386 Packages [7822 kB]
Ign http://incoming.debian.org InRelease
Get:7 http://incoming.debian.org Release.gpg [836 B]
-Get:8 http://ftp.gr.debian.org unstable/contrib i386 Packages [67.0 kB]
+Get:8 http://incoming.debian.org unstable/main Sources [5884 kB]
+Get:9 http://ftp.gr.debian.org unstable/contrib i386 Packages [68.2 kB]
Ign http://ftp.gr.debian.org unstable/contrib TranslationIndex
-Get:9 http://ftp.gr.debian.org unstable/main TranslationIndex [2045 B]
+Get:10 http://ftp.gr.debian.org unstable/main TranslationIndex [2045 B]
Ign http://ftp.gr.debian.org unstable/contrib Translation-en
-Get:10 http://incoming.debian.org unstable/main Sources [5403 kB]
-Get:11 http://incoming.debian.org unstable/contrib Sources [51.3 kB]
-Get:12 http://incoming.debian.org unstable/non-free Sources [96.3 kB]
-Get:13 http://incoming.debian.org unstable/main i386 Packages [7570 kB]
-Get:14 http://incoming.debian.org unstable/contrib i386 Packages [67.0 kB]
+Get:11 http://incoming.debian.org unstable/contrib Sources [56.9 kB]
+Get:12 http://incoming.debian.org unstable/non-free Sources [104 kB]
+Get:13 http://incoming.debian.org unstable/main i386 Packages [7822 kB]
+Get:14 http://incoming.debian.org unstable/contrib i386 Packages [68.2 kB]
Ign http://incoming.debian.org unstable/contrib TranslationIndex
Get:15 http://incoming.debian.org unstable/main TranslationIndex [2045 B]
Get:16 http://incoming.debian.org Release [1604 B]
-Get:17 http://incoming.debian.org Sources [30.7 kB]
-Get:18 http://incoming.debian.org Packages [218 kB]
+Get:17 http://incoming.debian.org Sources [49.2 kB]
+Get:18 http://incoming.debian.org Packages [352 kB]
Ign http://incoming.debian.org unstable/contrib Translation-en
Ign http://incoming.debian.org Translation-en
-Fetched 26.9 MB in 16s (1682 kB/s)
+Fetched 28.6 MB in 15s (1897 kB/s)
Reading package lists...
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -83,11 +83,11 @@ Building dependency tree...
Reading state information...
NOTICE: 'r-bioc-biobase' packaging is maintained in the 'Git' version control system at:
git://git.debian.org/git/debian-med/r-bioc-biobase.git
-Need to get 2229 kB of source archives.
-Get:1 http://incoming.debian.org/buildd-unstable/ r-bioc-biobase 2.12.2-1 (dsc) [1944 B]
-Get:2 http://incoming.debian.org/buildd-unstable/ r-bioc-biobase 2.12.2-1 (tar) [2222 kB]
-Get:3 http://incoming.debian.org/buildd-unstable/ r-bioc-biobase 2.12.2-1 (diff) [5417 B]
-Fetched 2229 kB in 2s (872 kB/s)
+Need to get 1934 kB of source archives.
+Get:1 http://incoming.debian.org/buildd-unstable/ r-bioc-biobase 2.14.0-1 (dsc) [2004 B]
+Get:2 http://incoming.debian.org/buildd-unstable/ r-bioc-biobase 2.14.0-1 (tar) [1926 kB]
+Get:3 http://incoming.debian.org/buildd-unstable/ r-bioc-biobase 2.14.0-1 (diff) [5645 B]
+Fetched 1934 kB in 2s (810 kB/s)
Download complete and in download only mode
Check arch
@@ -101,84 +101,88 @@ Check arch
Build-Depends: build-essential, fakeroot
Checking for already installed dependencies...
build-essential: already installed (11.5)
-fakeroot: already installed (1.16-1)
+fakeroot: already installed (1.18.1-1)
Checking for dependency conflicts...
Installing positive dependencies:
Reading package lists...
Building dependency tree...
Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 18 not upgraded.
+0 upgraded, 0 newly installed, 0 to remove and 11 not upgraded.
Removing negative dependencies:
Reading package lists...
Building dependency tree...
Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 18 not upgraded.
+0 upgraded, 0 newly installed, 0 to remove and 11 not upgraded.
Checking correctness of dependencies...
┌──────────────────────────────────────────────────────────────────────────────┐
│ Install r-bioc-biobase build dependencies (internal resolver) │
└──────────────────────────────────────────────────────────────────────────────┘
-Build-Depends: base-files, base-passwd, bash, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, ncurses-base, ncurses-bin, perl-base, sed, login, sysvinit-utils, sysvinit, tar, bsdutils, mount, util-linux, libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), cdbs, debhelper (>= 8), r-base-dev
+Build-Depends: base-files, base-passwd, bash, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, ncurses-base, ncurses-bin, perl-base, sed, login, sysvinit-utils, sysvinit, tar, bsdutils, mount, util-linux, libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), cdbs, debhelper (>= 8), r-base-dev (>= 2.10)
Checking for already installed dependencies...
-base-files: already installed (6.4)
+base-files: already installed (6.5)
base-passwd: already installed (3.5.23)
bash: already installed (4.1-3)
-coreutils: already installed (8.5-1)
-dash: already installed (0.5.5.1-7.4)
-debianutils: already installed (4.0.2)
-diffutils: already installed (1:3.0-1)
-dpkg: already installed (1.16.0.3)
-e2fsprogs: already installed (1.42~WIP-2011-07-02-1)
+coreutils: already installed (8.13-3)
+dash: already installed (0.5.7-2)
+debianutils: already installed (4.0.4)
+diffutils: already installed (1:3.2-1)
+dpkg: already installed (1.16.1.1)
+e2fsprogs: already installed (1.42~WIP-2011-10-16-1)
findutils: already installed (4.4.2-1+b1)
-grep: already installed (2.9-1)
+grep: already installed (2.9-2)
gzip: already installed (1.4-1)
hostname: already installed (3.06)
-ncurses-base: already installed (5.9-1)
-ncurses-bin: already installed (5.9-1)
-perl-base: already installed (5.12.4-1)
+ncurses-base: already installed (5.9-2)
+ncurses-bin: already installed (5.9-2)
+perl-base: already installed (5.12.4-6)
sed: already installed (4.2.1-9)
login: already installed (1:4.1.4.2+svn3283-3)
-sysvinit-utils: already installed (2.88dsf-13.11)
-sysvinit: already installed (2.88dsf-13.11)
-tar: already installed (1.25-3)
-bsdutils: already installed (1:2.19.1-4)
-mount: already installed (2.19.1-4)
-util-linux: already installed (2.19.1-4)
-libc6-dev: already installed (2.13-10)
-gcc: already installed (4:4.6.1-2 >= 4:4.4.3 is satisfied)
-g++: already installed (4:4.6.1-2 >= 4:4.4.3 is satisfied)
+sysvinit-utils: already installed (2.88dsf-13.12)
+sysvinit: already installed (2.88dsf-13.12)
+tar: already installed (1.26-2)
+bsdutils: already installed (1:2.19.1-5)
+mount: already installed (2.19.1-5)
+util-linux: already installed (2.19.1-5)
+libc6-dev: already installed (2.13-21)
+gcc: already installed (4:4.6.1-3 >= 4:4.4.3 is satisfied)
+g++: already installed (4:4.6.1-3 >= 4:4.4.3 is satisfied)
make: already installed (3.81-8.1)
-dpkg-dev: already installed (1.16.0.3 >= 1.13.5 is satisfied)
+dpkg-dev: already installed (1.16.1.1 >= 1.13.5 is satisfied)
cdbs: missing
debhelper: missing
-Using default version 8.9.3
+Using default version 8.9.8
r-base-dev: missing
+Using default version 2.14.0-1
Checking for dependency conflicts...
Installing positive dependencies: cdbs debhelper r-base-dev
Reading package lists...
Building dependency tree...
Reading state information...
The following extra packages will be installed:
- bsdmainutils dpatch file fontconfig fontconfig-config gettext gettext-base
- gfortran gfortran-4.6 groff-base html2text intltool-debian libblas-dev
- libblas3gf libbz2-dev libcairo2 libcroco3 libdatrie1 libexpat1
- libfontconfig1 libfreetype6 libgfortran3 libglib2.0-0 libice6 libjpeg62
- libjpeg8 libjpeg8-dev liblapack-dev liblapack3gf libmagic1 libncurses5-dev
- libpango1.0-0 libpaper-utils libpaper1 libpcre3 libpcre3-dev libpcrecpp0
- libpipeline1 libpixman-1-0 libpng12-0 libpng12-dev libreadline-dev
- libreadline6-dev libsm6 libthai-data libthai0 libtiff4 libunistring0
- libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6
- libxext6 libxft2 libxml2 libxrender1 libxss1 libxt6 man-db po-debconf
- r-base-core tcl8.5 tk8.5 ttf-dejavu-core ucf unzip x11-common xdg-utils zip
- zlib1g-dev
+ bsdmainutils cpp-4.6 dpatch file fontconfig fontconfig-config g++-4.6
+ gcc-4.6 gcc-4.6-base gettext gettext-base gfortran gfortran-4.6 groff-base
+ html2text intltool-debian libblas-dev libblas3gf libbz2-dev libcairo2
+ libcroco3 libdatrie1 libexpat1 libfontconfig1 libfreetype6 libgcc1
+ libgfortran3 libglib2.0-0 libgomp1 libice6 libjpeg8 libjpeg8-dev
+ liblapack-dev liblapack3gf libmagic1 libncurses5-dev libpango1.0-0
+ libpaper-utils libpaper1 libpcre3 libpcre3-dev libpcrecpp0 libpipeline1
+ libpixman-1-0 libpng12-0 libpng12-dev libquadmath0 libreadline-dev
+ libreadline6-dev libsm6 libstdc++6 libstdc++6-4.6-dev libthai-data libthai0
+ libtiff4 libtinfo-dev libunistring0 libx11-6 libx11-data libxau6
+ libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2
+ libxrender1 libxss1 libxt6 man-db po-debconf r-base-core tcl8.5 tk8.5
+ ttf-dejavu-core ucf unzip x11-common xdg-utils zip zlib1g-dev
Suggested packages:
- wamerican wordlist whois vacation devscripts dh-make curl defoma gettext-doc
- gfortran-multilib gfortran-doc gfortran-4.6-multilib gfortran-4.6-doc
- libgfortran3-dbg groff ncurses-doc ttf-baekmuk ttf-arphic-gbsn00lp
- ttf-arphic-bsmi00lp ttf-arphic-gkai00mp ttf-arphic-bkai00mp less www-browser
- libmail-box-perl r-doc-info r-doc-pdf r-mathlib r-base-html tclreadline
- gvfs-bin
+ wamerican wordlist whois vacation devscripts gcc-4.6-locales dh-make curl
+ defoma g++-4.6-multilib gcc-4.6-doc libstdc++6-4.6-dbg gcc-4.6-multilib
+ libmudflap0-4.6-dev libgcc1-dbg libgomp1-dbg libquadmath0-dbg
+ libmudflap0-dbg binutils-gold gettext-doc gfortran-multilib gfortran-doc
+ gfortran-4.6-multilib gfortran-4.6-doc libgfortran3-dbg groff ncurses-doc
+ ttf-baekmuk ttf-arphic-gbsn00lp ttf-arphic-bsmi00lp ttf-arphic-gkai00mp
+ ttf-arphic-bkai00mp libstdc++6-4.6-doc less www-browser libmail-box-perl
+ r-doc-info r-doc-pdf r-mathlib r-base-html tclreadline gvfs-bin
Recommended packages:
autotools-dev patchutils autopoint libglib2.0-data shared-mime-info
x-ttcidfont-conf xml-core libmail-sendmail-perl r-recommended r-doc-html
@@ -187,286 +191,333 @@ The following NEW packages will be installed:
bsdmainutils cdbs debhelper dpatch file fontconfig fontconfig-config gettext
gettext-base gfortran gfortran-4.6 groff-base html2text intltool-debian
libblas-dev libblas3gf libbz2-dev libcairo2 libcroco3 libdatrie1 libexpat1
- libfontconfig1 libfreetype6 libgfortran3 libglib2.0-0 libice6 libjpeg62
- libjpeg8 libjpeg8-dev liblapack-dev liblapack3gf libmagic1 libncurses5-dev
+ libfontconfig1 libfreetype6 libgfortran3 libglib2.0-0 libice6 libjpeg8
+ libjpeg8-dev liblapack-dev liblapack3gf libmagic1 libncurses5-dev
libpango1.0-0 libpaper-utils libpaper1 libpcre3 libpcre3-dev libpcrecpp0
libpipeline1 libpixman-1-0 libpng12-0 libpng12-dev libreadline-dev
- libreadline6-dev libsm6 libthai-data libthai0 libtiff4 libunistring0
- libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6
- libxext6 libxft2 libxml2 libxrender1 libxss1 libxt6 man-db po-debconf
- r-base-core r-base-dev tcl8.5 tk8.5 ttf-dejavu-core ucf unzip x11-common
- xdg-utils zip zlib1g-dev
-0 upgraded, 76 newly installed, 0 to remove and 18 not upgraded.
-Need to get 49.5 MB of archives.
+ libreadline6-dev libsm6 libthai-data libthai0 libtiff4 libtinfo-dev
+ libunistring0 libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0
+ libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxrender1 libxss1 libxt6 man-db
+ po-debconf r-base-core r-base-dev tcl8.5 tk8.5 ttf-dejavu-core ucf unzip
+ x11-common xdg-utils zip zlib1g-dev
+The following packages will be upgraded:
+ cpp-4.6 g++-4.6 gcc-4.6 gcc-4.6-base libgcc1 libgomp1 libquadmath0
+ libstdc++6 libstdc++6-4.6-dev
+9 upgraded, 76 newly installed, 0 to remove and 2 not upgraded.
+Need to get 75.0 MB of archives.
After this operation, 120 MB of additional disk space will be used.
-Get:1 http://ftp.gr.debian.org/debian/ unstable/main libpipeline1 i386 1.2.0-3 [37.6 kB]
-Get:2 http://ftp.gr.debian.org/debian/ unstable/main libdatrie1 i386 0.2.4-3 [28.6 kB]
-Get:3 http://ftp.gr.debian.org/debian/ unstable/main libexpat1 i386 2.0.1-7 [138 kB]
-Get:4 http://ftp.gr.debian.org/debian/ unstable/main libfreetype6 i386 2.4.4-2 [419 kB]
-Get:5 http://ftp.gr.debian.org/debian/ unstable/main ucf all 3.0025+nmu2 [70.6 kB]
-Get:6 http://ftp.gr.debian.org/debian/ unstable/main ttf-dejavu-core all 2.33-1 [1550 kB]
-Get:7 http://ftp.gr.debian.org/debian/ unstable/main fontconfig-config all 2.8.0-3 [221 kB]
-Get:8 http://ftp.gr.debian.org/debian/ unstable/main libfontconfig1 i386 2.8.0-3 [285 kB]
-Get:9 http://ftp.gr.debian.org/debian/ unstable/main libgfortran3 i386 4.6.1-5 [355 kB]
-Get:10 http://ftp.gr.debian.org/debian/ unstable/main x11-common all 1:7.6+7 [275 kB]
-Get:11 http://ftp.gr.debian.org/debian/ unstable/main libice6 i386 2:1.0.7-2 [55.2 kB]
-Get:12 http://ftp.gr.debian.org/debian/ unstable/main libpixman-1-0 i386 0.22.2-1 [371 kB]
-Get:13 http://ftp.gr.debian.org/debian/ unstable/main libpng12-0 i386 1.2.46-3 [192 kB]
-Get:14 http://ftp.gr.debian.org/debian/ unstable/main libxau6 i386 1:1.0.6-3 [16.9 kB]
-Get:15 http://ftp.gr.debian.org/debian/ unstable/main libxdmcp6 i386 1:1.1.0-3 [23.3 kB]
-Get:16 http://ftp.gr.debian.org/debian/ unstable/main libxcb1 i386 1.7-3 [48.8 kB]
-Get:17 http://ftp.gr.debian.org/debian/ unstable/main libx11-data all 2:1.4.4-1 [183 kB]
-Get:18 http://ftp.gr.debian.org/debian/ unstable/main libx11-6 i386 2:1.4.4-1 [895 kB]
-Get:19 http://ftp.gr.debian.org/debian/ unstable/main libxcb-render0 i386 1.7-3 [17.3 kB]
-Get:20 http://ftp.gr.debian.org/debian/ unstable/main libxcb-shm0 i386 1.7-3 [9572 B]
-Get:21 http://ftp.gr.debian.org/debian/ unstable/main libxrender1 i386 1:0.9.6-2 [31.1 kB]
-Get:22 http://ftp.gr.debian.org/debian/ unstable/main libcairo2 i386 1.10.2-6.1 [971 kB]
-Get:23 http://ftp.gr.debian.org/debian/ unstable/main libpcre3 i386 8.12-3 [255 kB]
-Get:24 http://ftp.gr.debian.org/debian/ unstable/main libglib2.0-0 i386 2.28.6-1 [1503 kB]
-Get:25 http://ftp.gr.debian.org/debian/ unstable/main libthai-data all 0.1.15-2 [201 kB]
-Get:26 http://ftp.gr.debian.org/debian/ unstable/main libthai0 i386 0.1.15-2 [43.3 kB]
-Get:27 http://ftp.gr.debian.org/debian/ unstable/main libxft2 i386 2.2.0-3 [58.4 kB]
-Get:28 http://ftp.gr.debian.org/debian/ unstable/main fontconfig i386 2.8.0-3 [335 kB]
-Get:29 http://ftp.gr.debian.org/debian/ unstable/main libpango1.0-0 i386 1.28.4-2 [439 kB]
-Get:30 http://ftp.gr.debian.org/debian/ unstable/main libsm6 i386 2:1.2.0-2 [29.1 kB]
-Get:31 http://ftp.gr.debian.org/debian/ unstable/main libxext6 i386 2:1.3.0-3 [52.4 kB]
-Get:32 http://ftp.gr.debian.org/debian/ unstable/main libxt6 i386 1:1.1.1-2 [200 kB]
-Get:33 http://ftp.gr.debian.org/debian/ unstable/main bsdmainutils i386 8.2.3 [203 kB]
-Get:34 http://ftp.gr.debian.org/debian/ unstable/main groff-base i386 1.21-6 [1127 kB]
-Get:35 http://ftp.gr.debian.org/debian/ unstable/main man-db i386 2.6.0.2-2 [1013 kB]
-Get:36 http://ftp.gr.debian.org/debian/ unstable/main libmagic1 i386 5.04-5+b1 [233 kB]
-Get:37 http://ftp.gr.debian.org/debian/ unstable/main file i386 5.04-5+b1 [49.4 kB]
-Get:38 http://ftp.gr.debian.org/debian/ unstable/main gettext-base i386 0.18.1.1-3 [130 kB]
-Get:39 http://ftp.gr.debian.org/debian/ unstable/main libxml2 i386 2.7.8.dfsg-4 [882 kB]
-Get:40 http://ftp.gr.debian.org/debian/ unstable/main html2text i386 1.3.2a-15 [101 kB]
-Get:41 http://ftp.gr.debian.org/debian/ unstable/main libcroco3 i386 0.6.2-1 [116 kB]
-Get:42 http://ftp.gr.debian.org/debian/ unstable/main libunistring0 i386 0.9.3-4 [431 kB]
-Get:43 http://ftp.gr.debian.org/debian/ unstable/main gettext i386 0.18.1.1-3 [1973 kB]
-Get:44 http://ftp.gr.debian.org/debian/ unstable/main intltool-debian all 0.35.0+20060710.1 [30.8 kB]
-Get:45 http://ftp.gr.debian.org/debian/ unstable/main po-debconf all 1.0.16+nmu1 [223 kB]
-Get:46 http://ftp.gr.debian.org/debian/ unstable/main debhelper all 8.9.3 [561 kB]
-Get:47 http://ftp.gr.debian.org/debian/ unstable/main cdbs all 0.4.96 [75.8 kB]
-Get:48 http://ftp.gr.debian.org/debian/ unstable/main dpatch all 2.0.31 [92.3 kB]
-Get:49 http://ftp.gr.debian.org/debian/ unstable/main gfortran-4.6 i386 4.6.1-5 [5349 kB]
-Get:50 http://ftp.gr.debian.org/debian/ unstable/main gfortran i386 4:4.6.1-2 [1124 B]
-Get:51 http://ftp.gr.debian.org/debian/ unstable/main libblas3gf i386 1.2-8 [211 kB]
-Get:52 http://ftp.gr.debian.org/debian/ unstable/main libblas-dev i386 1.2-8 [218 kB]
-Get:53 http://ftp.gr.debian.org/debian/ unstable/main libbz2-dev i386 1.0.5-6 [31.6 kB]
-Get:54 http://ftp.gr.debian.org/debian/ unstable/main libjpeg62 i386 6b1-2 [93.7 kB]
-Get:55 http://ftp.gr.debian.org/debian/ unstable/main libjpeg8 i386 8c-2 [131 kB]
-Get:56 http://ftp.gr.debian.org/debian/ unstable/main libjpeg8-dev i386 8c-2 [231 kB]
-Get:57 http://ftp.gr.debian.org/debian/ unstable/main liblapack3gf i386 3.3.0-4 [3227 kB]
-Get:58 http://ftp.gr.debian.org/debian/ unstable/main liblapack-dev i386 3.3.0-4 [3385 kB]
-Get:59 http://ftp.gr.debian.org/debian/ unstable/main libncurses5-dev i386 5.9-1 [467 kB]
-Get:60 http://ftp.gr.debian.org/debian/ unstable/main libpaper1 i386 1.1.24+nmu1 [21.6 kB]
-Get:61 http://ftp.gr.debian.org/debian/ unstable/main libpaper-utils i386 1.1.24+nmu1 [17.9 kB]
-Get:62 http://ftp.gr.debian.org/debian/ unstable/main libpcrecpp0 i386 8.12-3 [113 kB]
-Get:63 http://ftp.gr.debian.org/debian/ unstable/main libpcre3-dev i386 8.12-3 [300 kB]
-Get:64 http://ftp.gr.debian.org/debian/ unstable/main zlib1g-dev i386 1:1.2.3.4.dfsg-3 [186 kB]
-Get:65 http://ftp.gr.debian.org/debian/ unstable/main libpng12-dev i386 1.2.46-3 [265 kB]
-Get:66 http://ftp.gr.debian.org/debian/ unstable/main libreadline6-dev i386 6.2-2 [247 kB]
-Get:67 http://ftp.gr.debian.org/debian/ unstable/main libreadline-dev i386 6.2-2 [878 B]
-Get:68 http://ftp.gr.debian.org/debian/ unstable/main libtiff4 i386 3.9.5-1 [187 kB]
-Get:69 http://ftp.gr.debian.org/debian/ unstable/main libxss1 i386 1:1.2.1-1 [16.0 kB]
-Get:70 http://ftp.gr.debian.org/debian/ unstable/main zip i386 3.0-4 [327 kB]
-Get:71 http://ftp.gr.debian.org/debian/ unstable/main unzip i386 6.0-5 [183 kB]
-Get:72 http://ftp.gr.debian.org/debian/ unstable/main xdg-utils all 1.1.0~rc1-2 [70.2 kB]
-Get:73 http://ftp.gr.debian.org/debian/ unstable/main tcl8.5 i386 8.5.10-1 [1637 kB]
-Get:74 http://ftp.gr.debian.org/debian/ unstable/main tk8.5 i386 8.5.10-1 [1178 kB]
-Get:75 http://ftp.gr.debian.org/debian/ unstable/main r-base-core i386 2.13.1-1 [14.9 MB]
-Get:76 http://ftp.gr.debian.org/debian/ unstable/main r-base-dev all 2.13.1-1 [3490 B]
+Get:1 http://ftp.gr.debian.org/debian/ unstable/main libgomp1 i386 4.6.2-3 [27.3 kB]
+Get:2 http://ftp.gr.debian.org/debian/ unstable/main gcc-4.6-base i386 4.6.2-3 [136 kB]
+Get:3 http://ftp.gr.debian.org/debian/ unstable/main libgcc1 i386 1:4.6.2-3 [54.2 kB]
+Get:4 http://ftp.gr.debian.org/debian/ unstable/main cpp-4.6 i386 4.6.2-3 [4646 kB]
+Get:5 http://ftp.gr.debian.org/debian/ unstable/main libquadmath0 i386 4.6.2-3 [195 kB]
+Get:6 http://ftp.gr.debian.org/debian/ unstable/main libstdc++6-4.6-dev i386 4.6.2-3 [1633 kB]
+Get:7 http://ftp.gr.debian.org/debian/ unstable/main g++-4.6 i386 4.6.2-3 [6781 kB]
+Get:8 http://ftp.gr.debian.org/debian/ unstable/main gcc-4.6 i386 4.6.2-3 [7319 kB]
+Get:9 http://ftp.gr.debian.org/debian/ unstable/main libstdc++6 i386 4.6.2-3 [343 kB]
+Get:10 http://ftp.gr.debian.org/debian/ unstable/main libpipeline1 i386 1.2.0-4 [37.6 kB]
+Get:11 http://ftp.gr.debian.org/debian/ unstable/main libpcre3 i386 8.12-4 [223 kB]
+Get:12 http://ftp.gr.debian.org/debian/ unstable/main libglib2.0-0 i386 2.28.8-1 [1633 kB]
+Get:13 http://ftp.gr.debian.org/debian/ unstable/main libxml2 i386 2.7.8.dfsg-5 [882 kB]
+Get:14 http://ftp.gr.debian.org/debian/ unstable/main libcroco3 i386 0.6.2-2 [122 kB]
+Get:15 http://ftp.gr.debian.org/debian/ unstable/main libdatrie1 i386 0.2.4-3 [28.6 kB]
+Get:16 http://ftp.gr.debian.org/debian/ unstable/main libexpat1 i386 2.0.1-7.1 [137 kB]
+Get:17 http://ftp.gr.debian.org/debian/ unstable/main libfreetype6 i386 2.4.7-2 [442 kB]
+Get:18 http://ftp.gr.debian.org/debian/ unstable/main ucf all 3.0025+nmu2 [70.6 kB]
+Get:19 http://ftp.gr.debian.org/debian/ unstable/main ttf-dejavu-core all 2.33-2 [1552 kB]
+Get:20 http://ftp.gr.debian.org/debian/ unstable/main fontconfig-config all 2.8.0-3 [221 kB]
+Get:21 http://ftp.gr.debian.org/debian/ unstable/main libfontconfig1 i386 2.8.0-3 [285 kB]
+Get:22 http://ftp.gr.debian.org/debian/ unstable/main libgfortran3 i386 4.6.2-3 [355 kB]
+Get:23 http://ftp.gr.debian.org/debian/ unstable/main x11-common all 1:7.6+9 [276 kB]
+Get:24 http://ftp.gr.debian.org/debian/ unstable/main libice6 i386 2:1.0.7-2 [55.2 kB]
+Get:25 http://ftp.gr.debian.org/debian/ unstable/main libpixman-1-0 i386 0.23.8-1 [423 kB]
+Get:26 http://ftp.gr.debian.org/debian/ unstable/main libpng12-0 i386 1.2.46-3 [192 kB]
+Get:27 http://ftp.gr.debian.org/debian/ unstable/main libxau6 i386 1:1.0.6-3 [16.9 kB]
+Get:28 http://ftp.gr.debian.org/debian/ unstable/main libxdmcp6 i386 1:1.1.0-3 [23.3 kB]
+Get:29 http://ftp.gr.debian.org/debian/ unstable/main libxcb1 i386 1.7-3 [48.8 kB]
+Get:30 http://ftp.gr.debian.org/debian/ unstable/main libx11-data all 2:1.4.4-2 [183 kB]
+Get:31 http://ftp.gr.debian.org/debian/ unstable/main libx11-6 i386 2:1.4.4-2 [895 kB]
+Get:32 http://ftp.gr.debian.org/debian/ unstable/main libxcb-render0 i386 1.7-3 [17.3 kB]
+Get:33 http://ftp.gr.debian.org/debian/ unstable/main libxcb-shm0 i386 1.7-3 [9572 B]
+Get:34 http://ftp.gr.debian.org/debian/ unstable/main libxrender1 i386 1:0.9.6-2 [31.1 kB]
+Get:35 http://ftp.gr.debian.org/debian/ unstable/main libcairo2 i386 1.10.2-6.1 [971 kB]
+Get:36 http://ftp.gr.debian.org/debian/ unstable/main libthai-data all 0.1.15-2 [201 kB]
+Get:37 http://ftp.gr.debian.org/debian/ unstable/main libthai0 i386 0.1.15-2 [43.3 kB]
+Get:38 http://ftp.gr.debian.org/debian/ unstable/main libxft2 i386 2.2.0-3 [58.4 kB]
+Get:39 http://ftp.gr.debian.org/debian/ unstable/main fontconfig i386 2.8.0-3 [335 kB]
+Get:40 http://ftp.gr.debian.org/debian/ unstable/main libpango1.0-0 i386 1.29.4-2 [458 kB]
+Get:41 http://ftp.gr.debian.org/debian/ unstable/main libpcrecpp0 i386 8.12-4 [113 kB]
+Get:42 http://ftp.gr.debian.org/debian/ unstable/main libsm6 i386 2:1.2.0-2 [29.1 kB]
+Get:43 http://ftp.gr.debian.org/debian/ unstable/main libjpeg8 i386 8c-2 [131 kB]
+Get:44 http://ftp.gr.debian.org/debian/ unstable/main libtiff4 i386 3.9.5-2 [198 kB]
+Get:45 http://ftp.gr.debian.org/debian/ unstable/main libunistring0 i386 0.9.3-5 [442 kB]
+Get:46 http://ftp.gr.debian.org/debian/ unstable/main libxext6 i386 2:1.3.0-3 [52.4 kB]
+Get:47 http://ftp.gr.debian.org/debian/ unstable/main libxss1 i386 1:1.2.1-2 [16.7 kB]
+Get:48 http://ftp.gr.debian.org/debian/ unstable/main libxt6 i386 1:1.1.1-2 [200 kB]
+Get:49 http://ftp.gr.debian.org/debian/ unstable/main bsdmainutils i386 8.2.3 [203 kB]
+Get:50 http://ftp.gr.debian.org/debian/ unstable/main groff-base i386 1.21-6 [1127 kB]
+Get:51 http://ftp.gr.debian.org/debian/ unstable/main man-db i386 2.6.0.2-2 [1013 kB]
+Get:52 http://ftp.gr.debian.org/debian/ unstable/main libmagic1 i386 5.09-2 [246 kB]
+Get:53 http://ftp.gr.debian.org/debian/ unstable/main file i386 5.09-2 [51.5 kB]
+Get:54 http://ftp.gr.debian.org/debian/ unstable/main gettext-base i386 0.18.1.1-5 [133 kB]
+Get:55 http://ftp.gr.debian.org/debian/ unstable/main cdbs all 0.4.99 [77.1 kB]
+Get:56 http://ftp.gr.debian.org/debian/ unstable/main html2text i386 1.3.2a-15 [101 kB]
+Get:57 http://ftp.gr.debian.org/debian/ unstable/main gettext i386 0.18.1.1-5 [2025 kB]
+Get:58 http://ftp.gr.debian.org/debian/ unstable/main intltool-debian all 0.35.0+20060710.1 [30.8 kB]
+Get:59 http://ftp.gr.debian.org/debian/ unstable/main po-debconf all 1.0.16+nmu1 [223 kB]
+Get:60 http://ftp.gr.debian.org/debian/ unstable/main debhelper all 8.9.8 [552 kB]
+Get:61 http://ftp.gr.debian.org/debian/ unstable/main dpatch all 2.0.33 [95.9 kB]
+Get:62 http://ftp.gr.debian.org/debian/ unstable/main gfortran-4.6 i386 4.6.2-3 [5353 kB]
+Get:63 http://ftp.gr.debian.org/debian/ unstable/main gfortran i386 4:4.6.1-3 [1122 B]
+Get:64 http://ftp.gr.debian.org/debian/ unstable/main libblas3gf i386 1.2.20110419-2 [210 kB]
+Get:65 http://ftp.gr.debian.org/debian/ unstable/main libblas-dev i386 1.2.20110419-2 [212 kB]
+Get:66 http://ftp.gr.debian.org/debian/ unstable/main libbz2-dev i386 1.0.5-7 [31.4 kB]
+Get:67 http://ftp.gr.debian.org/debian/ unstable/main libjpeg8-dev i386 8c-2 [231 kB]
+Get:68 http://ftp.gr.debian.org/debian/ unstable/main liblapack3gf i386 3.3.1-1 [3245 kB]
+Get:69 http://ftp.gr.debian.org/debian/ unstable/main liblapack-dev i386 3.3.1-1 [3485 kB]
+Get:70 http://ftp.gr.debian.org/debian/ unstable/main libtinfo-dev i386 5.9-2 [66.4 kB]
+Get:71 http://ftp.gr.debian.org/debian/ unstable/main libncurses5-dev i386 5.9-2 [421 kB]
+Get:72 http://ftp.gr.debian.org/debian/ unstable/main libpaper1 i386 1.1.24+nmu1 [21.6 kB]
+Get:73 http://ftp.gr.debian.org/debian/ unstable/main libpaper-utils i386 1.1.24+nmu1 [17.9 kB]
+Get:74 http://ftp.gr.debian.org/debian/ unstable/main libpcre3-dev i386 8.12-4 [303 kB]
+Get:75 http://ftp.gr.debian.org/debian/ unstable/main zlib1g-dev i386 1:1.2.3.4.dfsg-3 [186 kB]
+Get:76 http://ftp.gr.debian.org/debian/ unstable/main libpng12-dev i386 1.2.46-3 [265 kB]
+Get:77 http://ftp.gr.debian.org/debian/ unstable/main libreadline6-dev i386 6.2-7 [247 kB]
+Get:78 http://ftp.gr.debian.org/debian/ unstable/main libreadline-dev i386 6.2-7 [888 B]
+Get:79 http://ftp.gr.debian.org/debian/ unstable/main zip i386 3.0-4 [327 kB]
+Get:80 http://ftp.gr.debian.org/debian/ unstable/main unzip i386 6.0-5 [183 kB]
+Get:81 http://ftp.gr.debian.org/debian/ unstable/main xdg-utils all 1.1.0~rc1-2 [70.2 kB]
+Get:82 http://ftp.gr.debian.org/debian/ unstable/main tcl8.5 i386 8.5.10-1 [1637 kB]
+Get:83 http://ftp.gr.debian.org/debian/ unstable/main tk8.5 i386 8.5.10-1 [1178 kB]
+Get:84 http://ftp.gr.debian.org/debian/ unstable/main r-base-core i386 2.14.0-1 [18.9 MB]
+Get:85 http://ftp.gr.debian.org/debian/ unstable/main r-base-dev all 2.14.0-1 [3488 B]
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+Setting up libquadmath0 (4.6.2-3) ...
+Setting up gcc-4.6 (4.6.2-3) ...
+Setting up libpipeline1 (1.2.0-4) ...
+Setting up libpcre3 (8.12-4) ...
+Setting up libglib2.0-0 (2.28.8-1) ...
+No schema files found: doing nothing.
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Setting up libdatrie1 (0.2.4-3) ...
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-Setting up libfreetype6 (2.4.4-2) ...
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Setting up ucf (3.0025+nmu2) ...
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Setting up fontconfig-config (2.8.0-3) ...
Setting up libfontconfig1 (2.8.0-3) ...
-Setting up libgfortran3 (4.6.1-5) ...
-Setting up x11-common (1:7.6+7) ...
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All runlevel operations denied by policy
invoke-rc.d: policy-rc.d denied execution of start.
Setting up libice6 (2:1.0.7-2) ...
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Setting up libpng12-0 (1.2.46-3) ...
Setting up libxau6 (1:1.0.6-3) ...
Setting up libxdmcp6 (1:1.1.0-3) ...
Setting up libxcb1 (1.7-3) ...
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Setting up libxcb-render0 (1.7-3) ...
Setting up libxcb-shm0 (1.7-3) ...
Setting up libxrender1 (1:0.9.6-2) ...
Setting up libcairo2 (1.10.2-6.1) ...
-Setting up libpcre3 (8.12-3) ...
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Setting up libthai-data (0.1.15-2) ...
Setting up libthai0 (0.1.15-2) ...
Setting up libxft2 (2.2.0-3) ...
Setting up fontconfig (2.8.0-3) ...
Cleaning up old fontconfig caches... done.
Regenerating fonts cache... done.
-Setting up libpango1.0-0 (1.28.4-2) ...
+Setting up libpango1.0-0 (1.29.4-2) ...
+Setting up libpcrecpp0 (8.12-4) ...
Setting up libsm6 (2:1.2.0-2) ...
+Setting up libjpeg8 (8c-2) ...
+Setting up libtiff4 (3.9.5-2) ...
+Setting up libunistring0 (0.9.3-5) ...
Setting up libxext6 (2:1.3.0-3) ...
+Setting up libxss1 (1:1.2.1-2) ...
Setting up libxt6 (1:1.1.1-2) ...
Setting up bsdmainutils (8.2.3) ...
update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode.
@@ -474,47 +525,40 @@ update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in
Setting up groff-base (1.21-6) ...
Setting up man-db (2.6.0.2-2) ...
Building database of manual pages ...
-Setting up libmagic1 (5.04-5+b1) ...
-Setting up file (5.04-5+b1) ...
-Setting up gettext-base (0.18.1.1-3) ...
-Setting up libxml2 (2.7.8.dfsg-4) ...
+Setting up libmagic1 (5.09-2) ...
+Setting up file (5.09-2) ...
+Setting up gettext-base (0.18.1.1-5) ...
+Setting up cdbs (0.4.99) ...
Setting up html2text (1.3.2a-15) ...
-Setting up libcroco3 (0.6.2-1) ...
-Setting up libunistring0 (0.9.3-4) ...
-Setting up gettext (0.18.1.1-3) ...
+Setting up gettext (0.18.1.1-5) ...
Setting up intltool-debian (0.35.0+20060710.1) ...
Setting up po-debconf (1.0.16+nmu1) ...
-Setting up debhelper (8.9.3) ...
-Setting up cdbs (0.4.96) ...
-Setting up dpatch (2.0.31) ...
-Setting up gfortran-4.6 (4.6.1-5) ...
-Setting up gfortran (4:4.6.1-2) ...
+Setting up debhelper (8.9.8) ...
+Setting up dpatch (2.0.33) ...
+Setting up gfortran-4.6 (4.6.2-3) ...
+Setting up gfortran (4:4.6.1-3) ...
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode.
-Setting up libblas3gf (1.2-8) ...
+Setting up libblas3gf (1.2.20110419-2) ...
update-alternatives: using /usr/lib/libblas/libblas.so.3gf to provide /usr/lib/libblas.so.3gf (libblas.so.3gf) in auto mode.
-Setting up libblas-dev (1.2-8) ...
+Setting up libblas-dev (1.2.20110419-2) ...
update-alternatives: using /usr/lib/libblas/libblas.so to provide /usr/lib/libblas.so (libblas.so) in auto mode.
-Setting up libbz2-dev (1.0.5-6) ...
-Setting up libjpeg62 (6b1-2) ...
-Setting up libjpeg8 (8c-2) ...
+Setting up libbz2-dev (1.0.5-7) ...
Setting up libjpeg8-dev (8c-2) ...
-Setting up liblapack3gf (3.3.0-4) ...
+Setting up liblapack3gf (3.3.1-1) ...
update-alternatives: using /usr/lib/lapack/liblapack.so.3gf to provide /usr/lib/liblapack.so.3gf (liblapack.so.3gf) in auto mode.
-Setting up liblapack-dev (3.3.0-4) ...
+Setting up liblapack-dev (3.3.1-1) ...
update-alternatives: using /usr/lib/lapack/liblapack.so to provide /usr/lib/liblapack.so (liblapack.so) in auto mode.
-Setting up libncurses5-dev (5.9-1) ...
+Setting up libtinfo-dev (5.9-2) ...
+Setting up libncurses5-dev (5.9-2) ...
Setting up libpaper1 (1.1.24+nmu1) ...
Creating config file /etc/papersize with new version
Setting up libpaper-utils (1.1.24+nmu1) ...
-Setting up libpcrecpp0 (8.12-3) ...
-Setting up libpcre3-dev (8.12-3) ...
+Setting up libpcre3-dev (8.12-4) ...
Setting up zlib1g-dev (1:1.2.3.4.dfsg-3) ...
Setting up libpng12-dev (1.2.46-3) ...
-Setting up libreadline6-dev (6.2-2) ...
-Setting up libreadline-dev (6.2-2) ...
-Setting up libtiff4 (3.9.5-1) ...
-Setting up libxss1 (1:1.2.1-1) ...
+Setting up libreadline6-dev (6.2-7) ...
+Setting up libreadline-dev (6.2-7) ...
Setting up zip (3.0-4) ...
Setting up unzip (6.0-5) ...
Setting up xdg-utils (1.1.0~rc1-2) ...
@@ -522,20 +566,22 @@ Setting up tcl8.5 (8.5.10-1) ...
update-alternatives: using /usr/bin/tclsh8.5 to provide /usr/bin/tclsh (tclsh) in auto mode.
Setting up tk8.5 (8.5.10-1) ...
update-alternatives: using /usr/bin/wish8.5 to provide /usr/bin/wish (wish) in auto mode.
-Setting up r-base-core (2.13.1-1) ...
+Setting up r-base-core (2.14.0-1) ...
Setting R_PAPERSIZE_USER default to 'a4'
Creating config file /etc/R/Renviron with new version
-Setting up r-base-dev (2.13.1-1) ...
+Setting up r-base-dev (2.14.0-1) ...
+Setting up libstdc++6-4.6-dev (4.6.2-3) ...
+Setting up g++-4.6 (4.6.2-3) ...
Removing negative dependencies:
Reading package lists...
Building dependency tree...
Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 18 not upgraded.
+0 upgraded, 0 newly installed, 0 to remove and 2 not upgraded.
Checking correctness of dependencies...
Kernel: Linux 2.6.32-5-amd64 i386 (x86_64)
-Toolchain package versions: binutils_2.21.53.20110720-1 dpkg-dev_1.16.0.3 g++-4.6_4.6.1-5 gcc-4.6_4.6.1-5 libc6-dev_2.13-10 libstdc++6_4.6.1-5 libstdc++6-4.6-dev_4.6.1-5 linux-libc-dev_3.0.0-1
-Package versions: apt_0.8.15.3 base-files_6.4 base-passwd_3.5.23 bash_4.1-3 binutils_2.21.53.20110720-1 bsdmainutils_8.2.3 bsdutils_1:2.19.1-4 build-essential_11.5 bzip2_1.0.5-6 cdbs_0.4.96 coreutils_8.5-1 cpp_4:4.6.1-2 cpp-4.6_4.6.1-5 dash_0.5.5.1-7.4 debconf_1.5.40 debfoster_2.7-1.1 debhelper_8.9.3 debian-archive-keyring_2010.08.28 debianutils_4.0.2 diffutils_1:3.0-1 dpatch_2.0.31 dpkg_1.16.0.3 dpkg-dev_1.16.0.3 e2fslibs_1.42~WIP-2011-07-02-1 e2fsprogs_1.42~WIP-2011-07-02-1 fakeroot_1.16-1 file_5.04-5+b1 findutils_4.4.2-1+b1 fontconfig_2.8.0-3 fontconfig-config_2.8.0-3 g++_4:4.6.1-2 g++-4.6_4.6.1-5 gcc_4:4.6.1-2 gcc-4.6_4.6.1-5 gcc-4.6-base_4.6.1-5 gettext_0.18.1.1-3 gettext-base_0.18.1.1-3 gfortran_4:4.6.1-2 gfortran-4.6_4.6.1-5 gnupg_1.4.11-3 gpgv_1.4.11-3 grep_2.9-1 groff-base_1.21-6 gzip_1.4-1 hostname_3.06 html2text_1.3.2a-15 initscripts_2.88dsf-13.11 insserv_1.14.0-2.1 intltool-debian_0.35.0+20060710.1 libacl1_2.2.51-3 libattr1_1:2.4.46-3 libblas-dev_1.2-8 libblas3gf_1.2-8 libblkid1_2.19.1-4 libbz2-1.0_1.0.5-6 libbz2-dev_1.0.5-6 libc-bin_2.13-10 libc-dev-bin_2.13-10 libc6_2.13-10 libc6-dev_2.13-10 libcairo2_1.10.2-6.1 libcloog-ppl0_0.15.9-3 libcomerr2_1.42~WIP-2011-07-02-1 libcroco3_0.6.2-1 libdatrie1_0.2.4-3 libdb5.1_5.1.25-11 libdpkg-perl_1.16.0.3 libexpat1_2.0.1-7 libfontconfig1_2.8.0-3 libfreetype6_2.4.4-2 libgc1c2_1:7.1-8 libgcc1_1:4.6.1-5 libgdbm3_1.8.3-10 libgfortran3_4.6.1-5 libglib2.0-0_2.28.6-1 libgmp10_2:5.0.1+dfsg-7 libgmpxx4ldbl_2:5.0.1+dfsg-7 libgomp1_4.6.1-5 libice6_2:1.0.7-2 libjpeg62_6b1-2 libjpeg8_8c-2 libjpeg8-dev_8c-2 liblapack-dev_3.3.0-4 liblapack3gf_3.3.0-4 liblzma2_5.0.0-2 libmagic1_5.04-5+b1 libmount1_2.19.1-4 libmpc2_0.9-3 libmpfr4_3.0.1-5 libncurses5_5.9-1 libncurses5-dev_5.9-1 libpam-modules_1.1.3-2 libpam-modules-bin_1.1.3-2 libpam-runtime_1.1.3-2 libpam0g_1.1.3-2 libpango1.0-0_1.28.4-2 libpaper-utils_1.1.24+nmu1 libpaper1_1.1.24+nmu1 libpcre3_8.12-3 libpcre3-dev_8.12-3 libpcrecpp0_8.12-3 libpipeline1_1.2.0-3 libpixman-1-0_0.22.2-1 libpng12-0_1.2.46-3 libpng12-dev_1.2.46-3 libppl-c4_0.11.2-4 libppl9_0.11.2-4 libpwl5_0.11.2-4 libquadmath0_4.6.1-5 libreadline-dev_6.2-2 libreadline6_6.2-2 libreadline6-dev_6.2-2 libselinux1_2.0.98-1.1 libsepol1_2.0.42-1 libslang2_2.2.4-2 libsm6_2:1.2.0-2 libss2_1.42~WIP-2011-07-02-1 libstdc++6_4.6.1-5 libstdc++6-4.6-dev_4.6.1-5 libthai-data_0.1.15-2 libthai0_0.1.15-2 libtiff4_3.9.5-1 libtimedate-perl_1.2000-1 libunistring0_0.9.3-4 libusb-0.1-4_2:0.1.12-18 libuuid1_2.19.1-4 libx11-6_2:1.4.4-1 libx11-data_2:1.4.4-1 libxau6_1:1.0.6-3 libxcb-render0_1.7-3 libxcb-shm0_1.7-3 libxcb1_1.7-3 libxdmcp6_1:1.1.0-3 libxext6_2:1.3.0-3 libxft2_2.2.0-3 libxml2_2.7.8.dfsg-4 libxrender1_1:0.9.6-2 libxss1_1:1.2.1-1 libxt6_1:1.1.1-2 linux-libc-dev_3.0.0-1 login_1:4.1.4.2+svn3283-3 lsb-base_3.2-27 make_3.81-8.1 man-db_2.6.0.2-2 mawk_1.3.3-15 mount_2.19.1-4 multiarch-support_2.13-10 ncurses-base_5.9-1 ncurses-bin_5.9-1 passwd_1:4.1.4.2+svn3283-3 patch_2.6.1-2 perl_5.12.4-1 perl-base_5.12.4-1 perl-modules_5.12.4-1 po-debconf_1.0.16+nmu1 r-base-core_2.13.1-1 r-base-dev_2.13.1-1 readline-common_6.2-2 sed_4.2.1-9 sensible-utils_0.0.6 sudo_1.7.4p6-1 sysv-rc_2.88dsf-13.11 sysvinit_2.88dsf-13.11 sysvinit-utils_2.88dsf-13.11 tar_1.25-3 tcl8.5_8.5.10-1 tk8.5_8.5.10-1 ttf-dejavu-core_2.33-1 tzdata_2011h-3 ucf_3.0025+nmu2 unzip_6.0-5 util-linux_2.19.1-4 x11-common_1:7.6+7 xdg-utils_1.1.0~rc1-2 xz-utils_5.0.0-2 zip_3.0-4 zlib1g_1:1.2.3.4.dfsg-3 zlib1g-dev_1:1.2.3.4.dfsg-3
+Toolchain package versions: binutils_2.21.90.20111025-1 dpkg-dev_1.16.1.1 g++-4.6_4.6.2-3 gcc-4.6_4.6.2-3 libc6-dev_2.13-21 libstdc++6_4.6.2-3 libstdc++6-4.6-dev_4.6.2-3 linux-libc-dev_3.0.0-5
+Package versions: apt_0.8.15.9 base-files_6.5 base-passwd_3.5.23 bash_4.1-3 binutils_2.21.90.20111025-1 bsdmainutils_8.2.3 bsdutils_1:2.19.1-5 build-essential_11.5 bzip2_1.0.5-7 cdbs_0.4.99 coreutils_8.13-3 cpp_4:4.6.1-3 cpp-4.6_4.6.2-3 dash_0.5.7-2 debconf_1.5.41 debfoster_2.7-1.1 debhelper_8.9.8 debian-archive-keyring_2010.08.28 debianutils_4.0.4 diffutils_1:3.2-1 dpatch_2.0.33 dpkg_1.16.1.1 dpkg-dev_1.16.1.1 e2fslibs_1.42~WIP-2011-10-16-1 e2fsprogs_1.42~WIP-2011-10-16-1 fakeroot_1.18.1-1 file_5.09-2 findutils_4.4.2-1+b1 fontconfig_2.8.0-3 fontconfig-config_2.8.0-3 g++_4:4.6.1-3 g++-4.6_4.6.2-3 gcc_4:4.6.1-3 gcc-4.6_4.6.2-3 gcc-4.6-base_4.6.2-3 gettext_0.18.1.1-5 gettext-base_0.18.1.1-5 gfortran_4:4.6.1-3 gfortran-4.6_4.6.2-3 gnupg_1.4.11-3 gpgv_1.4.11-3 grep_2.9-2 groff-base_1.21-6 gzip_1.4-1 hostname_3.06 html2text_1.3.2a-15 initscripts_2.88dsf-13.12 insserv_1.14.0-2.1 intltool-debian_0.35.0+20060710.1 libacl1_2.2.51-3 libattr1_1:2.4.46-3 libblas-dev_1.2.20110419-2 libblas3gf_1.2.20110419-2 libblkid1_2.19.1-5 libbz2-1.0_1.0.5-7 libbz2-dev_1.0.5-7 libc-bin_2.13-21 libc-dev-bin_2.13-21 libc6_2.13-21 libc6-dev_2.13-21 libcairo2_1.10.2-6.1 libcomerr2_1.42~WIP-2011-10-16-1 libcroco3_0.6.2-2 libdatrie1_0.2.4-3 libdb5.1_5.1.25-11 libdpkg-perl_1.16.1.1 libexpat1_2.0.1-7.1 libfontconfig1_2.8.0-3 libfreetype6_2.4.7-2 libgc1c2_1:7.1-8 libgcc1_1:4.6.2-3 libgdbm3_1.8.3-10 libgfortran3_4.6.2-3 libglib2.0-0_2.28.8-1 libgmp10_2:5.0.2+dfsg-2 libgomp1_4.6.2-3 libice6_2:1.0.7-2 libjpeg8_8c-2 libjpeg8-dev_8c-2 liblapack-dev_3.3.1-1 liblapack3gf_3.3.1-1 liblzma5_5.1.1alpha+20110809-3 libmagic1_5.09-2 libmount1_2.19.1-5 libmpc2_0.9-4 libmpfr4_3.1.0-2 libncurses5_5.9-2 libncurses5-dev_5.9-2 libpam-modules_1.1.3-5 libpam-modules-bin_1.1.3-5 libpam-runtime_1.1.3-5 libpam0g_1.1.3-5 libpango1.0-0_1.29.4-2 libpaper-utils_1.1.24+nmu1 libpaper1_1.1.24+nmu1 libpcre3_8.12-4 libpcre3-dev_8.12-4 libpcrecpp0_8.12-4 libpipeline1_1.2.0-4 libpixman-1-0_0.23.8-1 libpng12-0_1.2.46-3 libpng12-dev_1.2.46-3 libquadmath0_4.6.2-3 libreadline-dev_6.2-7 libreadline6_6.2-7 libreadline6-dev_6.2-7 libselinux1_2.1.0-3 libsepol1_2.1.0-1.1 libslang2_2.2.4-3 libsm6_2:1.2.0-2 libss2_1.42~WIP-2011-10-16-1 libstdc++6_4.6.2-3 libstdc++6-4.6-dev_4.6.2-3 libthai-data_0.1.15-2 libthai0_0.1.15-2 libtiff4_3.9.5-2 libtimedate-perl_1.2000-1 libtinfo-dev_5.9-2 libtinfo5_5.9-2 libunistring0_0.9.3-5 libusb-0.1-4_2:0.1.12-19 libuuid1_2.19.1-5 libx11-6_2:1.4.4-2 libx11-data_2:1.4.4-2 libxau6_1:1.0.6-3 libxcb-render0_1.7-3 libxcb-shm0_1.7-3 libxcb1_1.7-3 libxdmcp6_1:1.1.0-3 libxext6_2:1.3.0-3 libxft2_2.2.0-3 libxml2_2.7.8.dfsg-5 libxrender1_1:0.9.6-2 libxss1_1:1.2.1-2 libxt6_1:1.1.1-2 linux-libc-dev_3.0.0-5 login_1:4.1.4.2+svn3283-3 lsb-base_3.2-28 make_3.81-8.1 man-db_2.6.0.2-2 mawk_1.3.3-16 mount_2.19.1-5 multiarch-support_2.13-21 ncurses-base_5.9-2 ncurses-bin_5.9-2 passwd_1:4.1.4.2+svn3283-3 patch_2.6.1-2 perl_5.12.4-6 perl-base_5.12.4-6 perl-modules_5.12.4-6 po-debconf_1.0.16+nmu1 r-base-core_2.14.0-1 r-base-dev_2.14.0-1 readline-common_6.2-7 sed_4.2.1-9 sensible-utils_0.0.6 sudo_1.8.3p1-1 sysv-rc_2.88dsf-13.12 sysvinit_2.88dsf-13.12 sysvinit-utils_2.88dsf-13.12 tar_1.26-2 tcl8.5_8.5.10-1 tk8.5_8.5.10-1 ttf-dejavu-core_2.33-2 tzdata_2011m-1 ucf_3.0025+nmu2 unzip_6.0-5 util-linux_2.19.1-5 x11-common_1:7.6+9 xdg-utils_1.1.0~rc1-2 xz-utils_5.1.1alpha+20110809-3 zip_3.0-4 zlib1g_1:1.2.3.4.dfsg-3 zlib1g-dev_1:1.2.3.4.dfsg-3
┌──────────────────────────────────────────────────────────────────────────────┐
│ Build │
@@ -546,12 +592,12 @@ Unpack source
─────────────
gpgv: keyblock resource `/home/buildd/.gnupg/trustedkeys.gpg': file open error
-gpgv: Signature made Thu Aug 4 00:12:34 2011 UTC using RSA key ID 2295D502
+gpgv: Signature made Wed Nov 2 05:31:37 2011 UTC using RSA key ID 2295D502
gpgv: Can't check signature: public key not found
-dpkg-source: warning: failed to verify signature on ./r-bioc-biobase_2.12.2-1.dsc
-dpkg-source: info: extracting r-bioc-biobase in r-bioc-biobase-2.12.2
-dpkg-source: info: unpacking r-bioc-biobase_2.12.2.orig.tar.gz
-dpkg-source: info: applying r-bioc-biobase_2.12.2-1.diff.gz
+dpkg-source: warning: failed to verify signature on ./r-bioc-biobase_2.14.0-1.dsc
+dpkg-source: info: extracting r-bioc-biobase in r-bioc-biobase-2.14.0
+dpkg-source: info: unpacking r-bioc-biobase_2.14.0.orig.tar.gz
+dpkg-source: info: applying r-bioc-biobase_2.14.0-1.diff.gz
Check disc space
────────────────
@@ -560,14 +606,9 @@ Check disc space
dpkg-buildpackage
─────────────────
-dpkg-buildpackage: export CFLAGS from dpkg-buildflags (origin: vendor): -g -O2
-dpkg-buildpackage: export CPPFLAGS from dpkg-buildflags (origin: vendor):
-dpkg-buildpackage: export CXXFLAGS from dpkg-buildflags (origin: vendor): -g -O2
-dpkg-buildpackage: export FFLAGS from dpkg-buildflags (origin: vendor): -g -O2
-dpkg-buildpackage: export LDFLAGS from dpkg-buildflags (origin: vendor):
dpkg-buildpackage: source package r-bioc-biobase
-dpkg-buildpackage: source version 2.12.2-1
- dpkg-source --before-build r-bioc-biobase-2.12.2
+dpkg-buildpackage: source version 2.14.0-1
+ dpkg-source --before-build r-bioc-biobase-2.14.0
dpkg-buildpackage: host architecture i386
fakeroot debian/rules clean
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
@@ -575,9 +616,9 @@ test -x debian/rules
dh_testroot
/usr/bin/make -f debian/rules reverse-config
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
-make[1]: Entering directory `/build/buildd-r-bioc-biobase_2.12.2-1-i386-DK1186/r-bioc-biobase-2.12.2'
+make[1]: Entering directory `/build/buildd-r-bioc-biobase_2.14.0-1-i386-RCJnOo/r-bioc-biobase-2.14.0'
make[1]: Nothing to be done for `reverse-config'.
-make[1]: Leaving directory `/build/buildd-r-bioc-biobase_2.12.2-1-i386-DK1186/r-bioc-biobase-2.12.2'
+make[1]: Leaving directory `/build/buildd-r-bioc-biobase_2.14.0-1-i386-RCJnOo/r-bioc-biobase-2.14.0'
if [ "reverse-patches" = "reverse-patches" ]; then rm -f debian/stamp-patched; fi
patches:
if [ "reverse-patches" != "reverse-patches" ]; then touch debian/stamp-patched; fi
@@ -597,11 +638,12 @@ rm -f config.log config.status
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
test -x debian/rules
mkdir -p "."
+/usr/share/cdbs/1/rules/buildcore.mk:109: WARNING: DEB_DH_BUILDDEB_ARGS is a deprecated variable
/usr/bin/make -f debian/rules reverse-config
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
-make[1]: Entering directory `/build/buildd-r-bioc-biobase_2.12.2-1-i386-DK1186/r-bioc-biobase-2.12.2'
+make[1]: Entering directory `/build/buildd-r-bioc-biobase_2.14.0-1-i386-RCJnOo/r-bioc-biobase-2.14.0'
make[1]: Nothing to be done for `reverse-config'.
-make[1]: Leaving directory `/build/buildd-r-bioc-biobase_2.12.2-1-i386-DK1186/r-bioc-biobase-2.12.2'
+make[1]: Leaving directory `/build/buildd-r-bioc-biobase_2.14.0-1-i386-RCJnOo/r-bioc-biobase-2.14.0'
if [ "debian/stamp-patched" = "reverse-patches" ]; then rm -f debian/stamp-patched; fi
patches:
if [ "debian/stamp-patched" != "reverse-patches" ]; then touch debian/stamp-patched; fi
@@ -609,9 +651,9 @@ if [ "debian/stamp-patched" != "reverse-patches" ] ; then \
/usr/bin/make -f debian/rules update-config ; \
fi
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
-make[1]: Entering directory `/build/buildd-r-bioc-biobase_2.12.2-1-i386-DK1186/r-bioc-biobase-2.12.2'
+make[1]: Entering directory `/build/buildd-r-bioc-biobase_2.14.0-1-i386-RCJnOo/r-bioc-biobase-2.14.0'
make[1]: Nothing to be done for `update-config'.
-make[1]: Leaving directory `/build/buildd-r-bioc-biobase_2.12.2-1-i386-DK1186/r-bioc-biobase-2.12.2'
+make[1]: Leaving directory `/build/buildd-r-bioc-biobase_2.14.0-1-i386-RCJnOo/r-bioc-biobase-2.14.0'
fakeroot debian/rules binary-arch
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
test -x debian/rules
@@ -619,29 +661,30 @@ dh_testroot
dh_prep
dh_installdirs -A
mkdir -p "."
+/usr/share/cdbs/1/rules/buildcore.mk:109: WARNING: DEB_DH_BUILDDEB_ARGS is a deprecated variable
dh_installdirs usr/lib/R/site-library
if test -f /usr/bin/xvfb-run; then \
xvfb-run -a \
- R CMD INSTALL -l /build/buildd-r-bioc-biobase_2.12.2-1-i386-DK1186/r-bioc-biobase-2.12.2/debian/r-bioc-biobase/usr/lib/R/site-library --clean \
+ R CMD INSTALL -l /build/buildd-r-bioc-biobase_2.14.0-1-i386-RCJnOo/r-bioc-biobase-2.14.0/debian/r-bioc-biobase/usr/lib/R/site-library --clean \
. ; \
else \
- R CMD INSTALL -l /build/buildd-r-bioc-biobase_2.12.2-1-i386-DK1186/r-bioc-biobase-2.12.2/debian/r-bioc-biobase/usr/lib/R/site-library \
+ R CMD INSTALL -l /build/buildd-r-bioc-biobase_2.14.0-1-i386-RCJnOo/r-bioc-biobase-2.14.0/debian/r-bioc-biobase/usr/lib/R/site-library \
--clean . ;\
fi
* installing *source* package 'Biobase' ...
** libs
-make[1]: Entering directory `/build/buildd-r-bioc-biobase_2.12.2-1-i386-DK1186/r-bioc-biobase-2.12.2/src'
-gcc -I/usr/share/R/include -fpic -std=gnu99 -O3 -pipe -g -c Rinit.c -o Rinit.o
-gcc -I/usr/share/R/include -fpic -std=gnu99 -O3 -pipe -g -c anyMissing.c -o anyMissing.o
-gcc -I/usr/share/R/include -fpic -std=gnu99 -O3 -pipe -g -c envir.c -o envir.o
-gcc -I/usr/share/R/include -fpic -std=gnu99 -O3 -pipe -g -c matchpt.c -o matchpt.o
-gcc -I/usr/share/R/include -fpic -std=gnu99 -O3 -pipe -g -c rowMedians.c -o rowMedians.o
-gcc -I/usr/share/R/include -fpic -std=gnu99 -O3 -pipe -g -c sublist_extract.c -o sublist_extract.o
-gcc -shared -o Biobase.so Rinit.o anyMissing.o envir.o matchpt.o rowMedians.o sublist_extract.o -L/usr/lib/R/lib -lR
-make[1]: Leaving directory `/build/buildd-r-bioc-biobase_2.12.2-1-i386-DK1186/r-bioc-biobase-2.12.2/src'
-make[1]: Entering directory `/build/buildd-r-bioc-biobase_2.12.2-1-i386-DK1186/r-bioc-biobase-2.12.2/src'
-make[1]: Leaving directory `/build/buildd-r-bioc-biobase_2.12.2-1-i386-DK1186/r-bioc-biobase-2.12.2/src'
-installing to /build/buildd-r-bioc-biobase_2.12.2-1-i386-DK1186/r-bioc-biobase-2.12.2/debian/r-bioc-biobase/usr/lib/R/site-library/Biobase/libs
+make[1]: Entering directory `/build/buildd-r-bioc-biobase_2.14.0-1-i386-RCJnOo/r-bioc-biobase-2.14.0/src'
+gcc -std=gnu99 -I/usr/share/R/include -fpic -O3 -pipe -g -c Rinit.c -o Rinit.o
+gcc -std=gnu99 -I/usr/share/R/include -fpic -O3 -pipe -g -c anyMissing.c -o anyMissing.o
+gcc -std=gnu99 -I/usr/share/R/include -fpic -O3 -pipe -g -c envir.c -o envir.o
+gcc -std=gnu99 -I/usr/share/R/include -fpic -O3 -pipe -g -c matchpt.c -o matchpt.o
+gcc -std=gnu99 -I/usr/share/R/include -fpic -O3 -pipe -g -c rowMedians.c -o rowMedians.o
+gcc -std=gnu99 -I/usr/share/R/include -fpic -O3 -pipe -g -c sublist_extract.c -o sublist_extract.o
+gcc -std=gnu99 -shared -o Biobase.so Rinit.o anyMissing.o envir.o matchpt.o rowMedians.o sublist_extract.o -L/usr/lib/R/lib -lR
+make[1]: Leaving directory `/build/buildd-r-bioc-biobase_2.14.0-1-i386-RCJnOo/r-bioc-biobase-2.14.0/src'
+make[1]: Entering directory `/build/buildd-r-bioc-biobase_2.14.0-1-i386-RCJnOo/r-bioc-biobase-2.14.0/src'
+make[1]: Leaving directory `/build/buildd-r-bioc-biobase_2.14.0-1-i386-RCJnOo/r-bioc-biobase-2.14.0/src'
+installing to /build/buildd-r-bioc-biobase_2.14.0-1-i386-RCJnOo/r-bioc-biobase-2.14.0/debian/r-bioc-biobase/usr/lib/R/site-library/Biobase/libs
** R
** data
** inst
@@ -649,20 +692,27 @@ installing to /build/buildd-r-bioc-biobase_2.12.2-1-i386-DK1186/r-bioc-biobase-2
** help
*** installing help indices
** building package indices ...
+*** tangling vignette sources ...
+ 'BiobaseDevelopment.Rnw'
+ 'Bioconductor.Rnw'
+ 'ExpressionSetIntroduction.Rnw'
+ 'HowTo.Rnw'
+ 'Qviews.Rnw'
+ 'esApply.Rnw'
** testing if installed package can be loaded
* DONE (Biobase)
-rm -vf /build/buildd-r-bioc-biobase_2.12.2-1-i386-DK1186/r-bioc-biobase-2.12.2/debian/r-bioc-biobase/usr/lib/R/site-library/R.css \
- /build/buildd-r-bioc-biobase_2.12.2-1-i386-DK1186/r-bioc-biobase-2.12.2/debian/r-bioc-biobase/usr/lib/R/site-library/Biobase/COPYING \
- /build/buildd-r-bioc-biobase_2.12.2-1-i386-DK1186/r-bioc-biobase-2.12.2/debian/r-bioc-biobase/usr/lib/R/site-library/Biobase/LICENSE.txt
+rm -vf /build/buildd-r-bioc-biobase_2.14.0-1-i386-RCJnOo/r-bioc-biobase-2.14.0/debian/r-bioc-biobase/usr/lib/R/site-library/R.css \
+ /build/buildd-r-bioc-biobase_2.14.0-1-i386-RCJnOo/r-bioc-biobase-2.14.0/debian/r-bioc-biobase/usr/lib/R/site-library/Biobase/COPYING \
+ /build/buildd-r-bioc-biobase_2.14.0-1-i386-RCJnOo/r-bioc-biobase-2.14.0/debian/r-bioc-biobase/usr/lib/R/site-library/Biobase/LICENSE.txt
if test -f debian/overrides; then \
- install -d /build/buildd-r-bioc-biobase_2.12.2-1-i386-DK1186/r-bioc-biobase-2.12.2/debian/r-bioc-biobase/usr/share/lintian/overrides ; \
+ install -d /build/buildd-r-bioc-biobase_2.14.0-1-i386-RCJnOo/r-bioc-biobase-2.14.0/debian/r-bioc-biobase/usr/share/lintian/overrides ; \
install -m 0644 debian/overrides \
- /build/buildd-r-bioc-biobase_2.12.2-1-i386-DK1186/r-bioc-biobase-2.12.2/debian/r-bioc-biobase/usr/share/lintian/overrides/r-bioc-biobase; \
+ /build/buildd-r-bioc-biobase_2.14.0-1-i386-RCJnOo/r-bioc-biobase-2.14.0/debian/r-bioc-biobase/usr/share/lintian/overrides/r-bioc-biobase; \
fi
Adding cdbs dependencies to debian/r-bioc-biobase.substvars
dh_installdirs -pr-bioc-biobase
-echo "R:Depends=r-base-core (>= 2.13.1~)" >> debian/r-bioc-biobase.substvars
+echo "R:Depends=r-base-core (>= 2.14.0~)" >> debian/r-bioc-biobase.substvars
dh_installdocs -pr-bioc-biobase ./NEWS
dh_installexamples -pr-bioc-biobase
dh_installman -pr-bioc-biobase
@@ -693,23 +743,23 @@ dh_perl -pr-bioc-biobase
dh_shlibdeps -pr-bioc-biobase
dh_gencontrol -pr-bioc-biobase
dh_md5sums -pr-bioc-biobase
-dh_builddeb -pr-bioc-biobase
-dpkg-deb: building package `r-bioc-biobase' in `../r-bioc-biobase_2.12.2-1_i386.deb'.
- dpkg-genchanges -B -mi386 Build Daemon <buildd_i386-biber at buildd.debian.org> >../r-bioc-biobase_2.12.2-1_i386.changes
+dh_builddeb -pr-bioc-biobase -- -Z xz
+dpkg-deb: building package `r-bioc-biobase' in `../r-bioc-biobase_2.14.0-1_i386.deb'.
+ dpkg-genchanges -B -mi386 Build Daemon <buildd_i386-biber at buildd.debian.org> >../r-bioc-biobase_2.14.0-1_i386.changes
dpkg-genchanges: arch-specific upload - not including arch-independent packages
dpkg-genchanges: binary-only upload - not including any source code
- dpkg-source --after-build r-bioc-biobase-2.12.2
+ dpkg-source --after-build r-bioc-biobase-2.14.0
dpkg-buildpackage: binary only upload (no source included)
────────────────────────────────────────────────────────────────────────────────
-Build finished at 20110804-0026
+Build finished at 20111102-0603
-r-bioc-biobase_2.12.2-1_i386.changes:
+r-bioc-biobase_2.14.0-1_i386.changes:
Format: 1.8
-Date: Thu, 04 Aug 2011 08:58:03 +0900
+Date: Wed, 02 Nov 2011 13:52:04 +0900
Source: r-bioc-biobase
Binary: r-bioc-biobase
Architecture: i386
-Version: 2.12.2-1
+Version: 2.14.0-1
Distribution: sid
Urgency: low
Maintainer: i386 Build Daemon <buildd_i386-biber at buildd.debian.org>
@@ -717,34 +767,38 @@ Changed-By: Charles Plessy <plessy at debian.org>
Description:
r-bioc-biobase - base functions for Bioconductor
Changes:
- r-bioc-biobase (2.12.2-1) unstable; urgency=low
+ r-bioc-biobase (2.14.0-1) unstable; urgency=low
.
- * New upstream release.
+ [cb6b786] Bioconductor release 2.9.
+ [d70e490] Build-Depend on R >= 2.10 according to DESCRIPTION.
+ [ae99e35] Include 7 digits of the commit id in the changelog entry.
+ [33b5d47] Compress binary package with xz.
Checksums-Sha1:
- 4ab09f0c6b7af942f79c6712e74ec1ca6c20a569 2670510 r-bioc-biobase_2.12.2-1_i386.deb
+ 7a651e05ddbcd8e0c39782ead754e0a4623a5cd8 2319614 r-bioc-biobase_2.14.0-1_i386.deb
Checksums-Sha256:
- 1faa3af628450e5ef256b1829ad9dd3cec379818fff21b5ef72e18b4d9b43941 2670510 r-bioc-biobase_2.12.2-1_i386.deb
+ bdd72ac21656b3f74d24ad8b13333cfdd936a465f80327eee810ba5c7054c915 2319614 r-bioc-biobase_2.14.0-1_i386.deb
Files:
- d3d4cd37fdd751aa0f98df63a077c6b5 2670510 gnu-r optional r-bioc-biobase_2.12.2-1_i386.deb
+ ab2a4a55689eedb9dbc0fae974e633c0 2319614 gnu-r optional r-bioc-biobase_2.14.0-1_i386.deb
┌──────────────────────────────────────────────────────────────────────────────┐
│ Package contents │
└──────────────────────────────────────────────────────────────────────────────┘
-r-bioc-biobase_2.12.2-1_i386.deb
+r-bioc-biobase_2.14.0-1_i386.deb
────────────────────────────────
new debian package, version 2.0.
- size 2670510 bytes: control archive= 4944 bytes.
- 1186 bytes, 25 lines control
+ size 2319614 bytes: control archive= 4957 bytes.
+ 1216 bytes, 26 lines control
13314 bytes, 141 lines md5sums
Package: r-bioc-biobase
- Version: 2.12.2-1
+ Version: 2.14.0-1
Architecture: i386
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
- Installed-Size: 3796
- Depends: libc6 (>= 2.3), r-base-core (>= 2.13.1~)
+ Installed-Size: 3067
+ Pre-Depends: dpkg (>= 1.15.6)
+ Depends: libc6 (>= 2.3), r-base-core (>= 2.14.0~)
Section: gnu-r
Priority: optional
Homepage: http://www.bioconductor.org
@@ -765,177 +819,177 @@ r-bioc-biobase_2.12.2-1_i386.deb
unofficial auto-generated Bioconductor packages for Debian and Ubuntu systems,
that are prepared by members of the Debian Med team.
-drwxr-xr-x root/root 0 2011-08-04 00:26 ./
-drwxr-xr-x root/root 0 2011-08-04 00:26 ./usr/
-drwxr-xr-x root/root 0 2011-08-04 00:26 ./usr/lib/
-drwxr-xr-x root/root 0 2011-08-04 00:26 ./usr/lib/R/
-drwxr-xr-x root/root 0 2011-08-04 00:26 ./usr/lib/R/site-library/
-drwxr-xr-x root/root 0 2011-08-04 00:26 ./usr/lib/R/site-library/Biobase/
-drwxr-xr-x root/root 0 2011-08-04 00:26 ./usr/lib/R/site-library/Biobase/Meta/
--rw-r--r-- root/root 475 2011-08-04 00:26 ./usr/lib/R/site-library/Biobase/Meta/vignette.rds
--rw-r--r-- root/root 3431 2011-08-04 00:26 ./usr/lib/R/site-library/Biobase/Meta/links.rds
--rw-r--r-- root/root 5637 2011-08-04 00:26 ./usr/lib/R/site-library/Biobase/Meta/Rd.rds
--rw-r--r-- root/root 5633 2011-08-04 00:26 ./usr/lib/R/site-library/Biobase/Meta/hsearch.rds
--rw-r--r-- root/root 1359 2011-08-04 00:26 ./usr/lib/R/site-library/Biobase/Meta/nsInfo.rds
--rw-r--r-- root/root 1023 2011-08-04 00:26 ./usr/lib/R/site-library/Biobase/Meta/package.rds
--rw-r--r-- root/root 324 2011-08-04 00:26 ./usr/lib/R/site-library/Biobase/Meta/data.rds
-drwxr-xr-x root/root 0 2011-08-04 00:26 ./usr/lib/R/site-library/Biobase/extdata/
--rw-r--r-- root/root 715 2011-08-04 00:26 ./usr/lib/R/site-library/Biobase/extdata/pData.txt
--rw-r--r-- root/root 109039 2011-08-04 00:26 ./usr/lib/R/site-library/Biobase/extdata/exprsData.txt
--rw-r--r-- root/root 2870 2011-08-04 00:26 ./usr/lib/R/site-library/Biobase/NAMESPACE
-drwxr-xr-x root/root 0 2011-08-04 00:26 ./usr/lib/R/site-library/Biobase/doc/
--rw-r--r-- root/root 28377 2011-08-04 00:26 ./usr/lib/R/site-library/Biobase/doc/BiobaseDevelopment.Rnw
--rw-r--r-- root/root 1426 2011-08-04 00:26 ./usr/lib/R/site-library/Biobase/doc/index.html
--rw-r--r-- root/root 3067 2011-08-04 00:26 ./usr/lib/R/site-library/Biobase/doc/Bioconductor.Rnw
--rw-r--r-- root/root 267601 2011-08-04 00:26 ./usr/lib/R/site-library/Biobase/doc/BiobaseDevelopment.pdf
--rw-r--r-- root/root 3727 2011-08-04 00:26 ./usr/lib/R/site-library/Biobase/doc/esApply.Rnw
--rw-r--r-- root/root 220 2011-08-04 00:26 ./usr/lib/R/site-library/Biobase/doc/Bioconductor.R
--rw-r--r-- root/root 6656 2011-08-04 00:26 ./usr/lib/R/site-library/Biobase/doc/ExpressionSetIntroduction.R
--rw-r--r-- root/root 60322 2011-08-04 00:26 ./usr/lib/R/site-library/Biobase/doc/HowTo.pdf
--rw-r--r-- root/root 1591 2011-08-04 00:26 ./usr/lib/R/site-library/Biobase/doc/esApply.R
--rw-r--r-- root/root 3048 2011-08-04 00:26 ./usr/lib/R/site-library/Biobase/doc/HowTo.Rnw
--rw-r--r-- root/root 18067 2011-08-04 00:26 ./usr/lib/R/site-library/Biobase/doc/ExpressionSetIntroduction.Rnw
--rw-r--r-- root/root 110288 2011-08-04 00:26 ./usr/lib/R/site-library/Biobase/doc/esApply.pdf
--rw-r--r-- root/root 3987 2011-08-04 00:26 ./usr/lib/R/site-library/Biobase/doc/Qviews.R
--rw-r--r-- root/root 79071 2011-08-04 00:26 ./usr/lib/R/site-library/Biobase/doc/Qviews.pdf
--rw-r--r-- root/root 206 2011-08-04 00:26 ./usr/lib/R/site-library/Biobase/doc/HowTo.R
-drwxr-xr-x root/root 0 2011-08-04 00:26 ./usr/lib/R/site-library/Biobase/doc/legacy/
--rw-r--r-- root/root 13630 2011-08-04 00:26 ./usr/lib/R/site-library/Biobase/doc/legacy/Biobase.Rnw
--rw-r--r-- root/root 197875 2011-08-04 00:26 ./usr/lib/R/site-library/Biobase/doc/ExpressionSetIntroduction.pdf
--rw-r--r-- root/root 5030 2011-08-04 00:26 ./usr/lib/R/site-library/Biobase/doc/Qviews.Rnw
--rw-r--r-- root/root 76653 2011-08-04 00:26 ./usr/lib/R/site-library/Biobase/doc/Bioconductor.pdf
--rw-r--r-- root/root 8004 2011-08-04 00:26 ./usr/lib/R/site-library/Biobase/doc/BiobaseDevelopment.R
-drwxr-xr-x root/root 0 2011-08-04 00:26 ./usr/lib/R/site-library/Biobase/UnitTests/
--rw-r--r-- root/root 8167 2011-08-04 00:26 ./usr/lib/R/site-library/Biobase/UnitTests/UpdateObject_test.R
--rw-r--r-- root/root 10497 2011-08-04 00:26 ./usr/lib/R/site-library/Biobase/UnitTests/AnnotatedDataFrame_test.R
--rw-r--r-- root/root 580 2011-08-04 00:26 ./usr/lib/R/site-library/Biobase/UnitTests/SnpSet_test.R
--rw-r--r-- root/root 1515 2011-08-04 00:26 ./usr/lib/R/site-library/Biobase/UnitTests/matrix_test.R
--rw-r--r-- root/root 5015 2011-08-04 00:26 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_test.R
--rw-r--r-- root/root 2096 2011-08-04 00:26 ./usr/lib/R/site-library/Biobase/UnitTests/esApply_test.R
--rw-r--r-- root/root 2522 2011-08-04 00:26 ./usr/lib/R/site-library/Biobase/UnitTests/combine_test.R
--rwxr-xr-x root/root 213 2011-08-04 00:26 ./usr/lib/R/site-library/Biobase/UnitTests/runfile.sh
--rw-r--r-- root/root 951 2011-08-04 00:26 ./usr/lib/R/site-library/Biobase/UnitTests/cache_test.R
--rw-r--r-- root/root 1907 2011-08-04 00:26 ./usr/lib/R/site-library/Biobase/UnitTests/subListExtract_test.R
-drwxr-xr-x root/root 0 2011-08-04 00:26 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/
-drwxr-xr-x root/root 0 2011-08-04 00:26 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/
--rw-r--r-- root/root 62219 2011-08-04 00:26 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/sample.exprSet.1.rda
--rw-r--r-- root/root 25005 2011-08-04 00:26 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/sample.eSet.rda
--rw-r--r-- root/root 802 2011-08-04 00:26 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/NChannelSet.Rda
--rw-r--r-- root/root 1235 2011-08-04 00:26 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/SnpSet.Rda
--rw-r--r-- root/root 1166 2011-08-04 00:26 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/MultiSet.Rda
--rw-r--r-- root/root 105 2011-08-04 00:26 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/Versions.Rda
--rw-r--r-- root/root 1016 2011-08-04 00:26 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/AnnotatedDataFrame.Rda
--rw-r--r-- root/root 524 2011-08-04 00:26 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/SWPD.rda
--rw-r--r-- root/root 167662 2011-08-04 00:26 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/golubMergeSub.rda
--rw-r--r-- root/root 231 2011-08-04 00:26 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/aggregator.Rda
--rw-r--r-- root/root 113 2011-08-04 00:26 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/ScalarCharacter.Rda
--rw-r--r-- root/root 795 2011-08-04 00:26 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/MIAME.Rda
--rw-r--r-- root/root 5537 2011-08-04 00:26 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/ExpressionSet.Rda
--rw-r--r-- root/root 146 2011-08-04 00:26 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/container.Rda
--rw-r--r-- root/root 143 2011-08-04 00:26 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/Versioned.Rda
--rw-r--r-- root/root 76485 2011-08-04 00:26 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/bbsym.rda
--rw-r--r-- root/root 95238 2011-08-04 00:26 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/swrep.rda
--rw-r--r-- root/root 112 2011-08-04 00:26 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/VersionsNull.Rda
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+-rw-r--r-- root/root 741 2011-11-02 06:02 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/1.8/MIAME.Rda
+-rw-r--r-- root/root 4678 2011-11-02 06:02 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/1.8/ExpressionSet.Rda
+-rw-r--r-- root/root 943 2011-11-02 06:02 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/1.8/phenoData.Rda
+-rw-r--r-- root/root 4588 2011-11-02 06:02 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/1.8/exprSet.Rda
+drwxr-xr-x root/root 0 2011-11-02 06:02 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/2.0/
+-rw-r--r-- root/root 609 2011-11-02 06:02 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/2.0/SnpSet.Rda
+-rw-r--r-- root/root 555 2011-11-02 06:02 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/2.0/MultiSet.Rda
+-rw-r--r-- root/root 105 2011-11-02 06:02 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/2.0/Versions.Rda
+-rw-r--r-- root/root 1014 2011-11-02 06:02 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/2.0/AnnotatedDataFrame.Rda
+-rw-r--r-- root/root 227 2011-11-02 06:02 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/2.0/aggregator.Rda
+-rw-r--r-- root/root 113 2011-11-02 06:02 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/2.0/ScalarCharacter.Rda
+-rw-r--r-- root/root 795 2011-11-02 06:02 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/2.0/MIAME.Rda
+-rw-r--r-- root/root 4822 2011-11-02 06:02 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/2.0/ExpressionSet.Rda
+-rw-r--r-- root/root 146 2011-11-02 06:02 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/2.0/container.Rda
+-rw-r--r-- root/root 143 2011-11-02 06:02 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/2.0/Versioned.Rda
+-rw-r--r-- root/root 998 2011-11-02 06:02 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/2.0/phenoData.Rda
+-rw-r--r-- root/root 110 2011-11-02 06:02 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/2.0/VersionsNull.Rda
+-rw-r--r-- root/root 183 2011-11-02 06:02 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/2.0/VersionedBiobase.Rda
+-rw-r--r-- root/root 4705 2011-11-02 06:02 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/2.0/exprSet.Rda
+drwxr-xr-x root/root 0 2011-11-02 06:02 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/raw/
+-rw-r--r-- root/root 705 2011-11-02 06:02 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/raw/pData.tab
+-rw-r--r-- root/root 6194 2011-11-02 06:02 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/raw/exprs.tab
+-rw-r--r-- root/root 423 2011-11-02 06:02 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/raw/varMetadata.tab
+-rw-r--r-- root/root 8317 2011-11-02 06:02 ./usr/lib/R/site-library/Biobase/UnitTests/NChannelSet_test.R
+-rw-r--r-- root/root 403 2011-11-02 06:02 ./usr/lib/R/site-library/Biobase/UnitTests/copyEnv_test.R
+-rw-r--r-- root/root 4598 2011-11-02 06:02 ./usr/lib/R/site-library/Biobase/UnitTests/data.frame_test.R
+-rw-r--r-- root/root 6194 2011-11-02 06:02 ./usr/lib/R/site-library/Biobase/UnitTests/ExpressionSet_test.R
+-rw-r--r-- root/root 318 2011-11-02 06:02 ./usr/lib/R/site-library/Biobase/UnitTests/Makefile
+-rw-r--r-- root/root 1257 2011-11-02 06:02 ./usr/lib/R/site-library/Biobase/UnitTests/utilities.R
+-rw-r--r-- root/root 2040 2011-11-02 06:02 ./usr/lib/R/site-library/Biobase/UnitTests/unsaveSetSlot_test.R
+-rw-r--r-- root/root 477 2011-11-02 06:02 ./usr/lib/R/site-library/Biobase/UnitTests/runalltests.R
+-rw-r--r-- root/root 180 2011-11-02 06:02 ./usr/lib/R/site-library/Biobase/UnitTests/checkClass_test.R
+-rw-r--r-- root/root 2035 2011-11-02 06:02 ./usr/lib/R/site-library/Biobase/UnitTests/AssayData_test.R
+-rw-r--r-- root/root 629 2011-11-02 06:02 ./usr/lib/R/site-library/Biobase/UnitTests/DataClasses_test.R
+-rwxr-xr-x root/root 39 2011-11-02 06:02 ./usr/lib/R/site-library/Biobase/UnitTests/runall.sh
+-rw-r--r-- root/root 20153 2011-11-02 06:02 ./usr/lib/R/site-library/Biobase/UnitTests/EsetSubclasses_test.R
+-rw-r--r-- root/root 1257 2011-11-02 06:02 ./usr/lib/R/site-library/Biobase/DESCRIPTION
+drwxr-xr-x root/root 0 2011-11-02 06:03 ./usr/lib/R/site-library/Biobase/libs/
+-rw-r--r-- root/root 18460 2011-11-02 06:03 ./usr/lib/R/site-library/Biobase/libs/Biobase.so
+drwxr-xr-x root/root 0 2011-11-02 06:02 ./usr/lib/R/site-library/Biobase/help/
+-rw-r--r-- root/root 863 2011-11-02 06:02 ./usr/lib/R/site-library/Biobase/help/paths.rds
+-rw-r--r-- root/root 243494 2011-11-02 06:02 ./usr/lib/R/site-library/Biobase/help/Biobase.rdb
+-rw-r--r-- root/root 2002 2011-11-02 06:02 ./usr/lib/R/site-library/Biobase/help/Biobase.rdx
+-rw-r--r-- root/root 14948 2011-11-02 06:02 ./usr/lib/R/site-library/Biobase/help/AnIndex
+-rw-r--r-- root/root 3457 2011-11-02 06:02 ./usr/lib/R/site-library/Biobase/help/aliases.rds
+drwxr-xr-x root/root 0 2011-11-02 06:02 ./usr/lib/R/site-library/Biobase/data/
+-rw-r--r-- root/root 2032 2011-11-02 06:02 ./usr/lib/R/site-library/Biobase/data/reporter.rda
+-rw-r--r-- root/root 1556 2011-11-02 06:02 ./usr/lib/R/site-library/Biobase/data/aaMap.R
+-rw-r--r-- root/root 19920 2011-11-02 06:02 ./usr/lib/R/site-library/Biobase/data/sample.MultiSet.rda
+-rw-r--r-- root/root 501 2011-11-02 06:02 ./usr/lib/R/site-library/Biobase/data/geneCov.R
+-rw-r--r-- root/root 267752 2011-11-02 06:02 ./usr/lib/R/site-library/Biobase/data/SW.rda
+-rw-r--r-- root/root 107 2011-11-02 06:02 ./usr/lib/R/site-library/Biobase/data/sample.eSet.R
+-rw-r--r-- root/root 73240 2011-11-02 06:02 ./usr/lib/R/site-library/Biobase/data/sample.ExpressionSet.rda
+-rw-r--r-- root/root 115 2011-11-02 06:02 ./usr/lib/R/site-library/Biobase/data/sample.exprSet.R
+-rw-r--r-- root/root 435 2011-11-02 06:02 ./usr/lib/R/site-library/Biobase/data/geneCovariate.rda
+-rw-r--r-- root/root 117 2011-11-02 06:02 ./usr/lib/R/site-library/Biobase/data/sample.exprSet.1.R
+-rw-r--r-- root/root 18025 2011-11-02 06:02 ./usr/lib/R/site-library/Biobase/data/seD.rda
+-rw-r--r-- root/root 125627 2011-11-02 06:02 ./usr/lib/R/site-library/Biobase/data/geneData.R
+-rw-r--r-- root/root 6718 2011-11-02 06:03 ./usr/lib/R/site-library/Biobase/INDEX
+-rw-r--r-- root/root 3988 2011-11-02 06:02 ./usr/lib/R/site-library/Biobase/NEWS
+drwxr-xr-x root/root 0 2011-11-02 06:02 ./usr/lib/R/site-library/Biobase/ExpressionSet/
+-rw-r--r-- root/root 212 2011-11-02 06:02 ./usr/lib/R/site-library/Biobase/ExpressionSet/DESCRIPTION
+drwxr-xr-x root/root 0 2011-11-02 06:02 ./usr/lib/R/site-library/Biobase/ExpressionSet/man/
+-rw-r--r-- root/root 180 2011-11-02 06:02 ./usr/lib/R/site-library/Biobase/ExpressionSet/man/@PKGNAME at .Rd
+drwxr-xr-x root/root 0 2011-11-02 06:02 ./usr/lib/R/site-library/Biobase/html/
+-rw-r--r-- root/root 1179 2011-11-02 06:02 ./usr/lib/R/site-library/Biobase/html/R.css
+-rw-r--r-- root/root 53325 2011-11-02 06:02 ./usr/lib/R/site-library/Biobase/html/00Index.html
+drwxr-xr-x root/root 0 2011-11-02 06:02 ./usr/lib/R/site-library/Biobase/R/
+-rw-r--r-- root/root 438866 2011-11-02 06:02 ./usr/lib/R/site-library/Biobase/R/Biobase.rdb
+-rw-r--r-- root/root 383 2011-11-02 06:02 ./usr/lib/R/site-library/Biobase/R/Biobase
+-rw-r--r-- root/root 9339 2011-11-02 06:02 ./usr/lib/R/site-library/Biobase/R/Biobase.rdx
+-rw-r--r-- root/root 650 2011-11-02 06:02 ./usr/lib/R/site-library/Biobase/CITATION
+drwxr-xr-x root/root 0 2011-11-02 06:02 ./usr/lib/R/site-library/Biobase/scripts/
+-rw-r--r-- root/root 5365 2011-11-02 06:02 ./usr/lib/R/site-library/Biobase/scripts/getBioC.R
+-rw-r--r-- root/root 774 2011-11-02 06:02 ./usr/lib/R/site-library/Biobase/scripts/esetTesting.R
+-rw-r--r-- root/root 2008 2011-11-02 06:02 ./usr/lib/R/site-library/Biobase/scripts/makeExpressionSetPackage.R
+-rw-r--r-- root/root 1213 2011-11-02 06:02 ./usr/lib/R/site-library/Biobase/scripts/getBioCHelp
+-rw-r--r-- root/root 1122 2011-11-02 06:02 ./usr/lib/R/site-library/Biobase/scripts/getBioCPkgNames.R
+-rw-r--r-- root/root 6808 2011-11-02 06:02 ./usr/lib/R/site-library/Biobase/scripts/query.packages.R
+-rw-r--r-- root/root 516 2011-11-02 06:02 ./usr/lib/R/site-library/Biobase/testClass.R
+drwxr-xr-x root/root 0 2011-11-02 06:02 ./usr/lib/R/site-library/Biobase/Code/
+-rw-r--r-- root/root 201 2011-11-02 06:02 ./usr/lib/R/site-library/Biobase/Code/DESCRIPTION
+drwxr-xr-x root/root 0 2011-11-02 06:02 ./usr/lib/R/site-library/Biobase/Code/man/
+-rw-r--r-- root/root 350 2011-11-02 06:02 ./usr/lib/R/site-library/Biobase/Code/man/get at PKGNAME@.Rd
+-rw-r--r-- root/root 487 2011-11-02 06:02 ./usr/lib/R/site-library/Biobase/Code/man/@PKGNAME at .Rd
+drwxr-xr-x root/root 0 2011-11-02 06:02 ./usr/lib/R/site-library/Biobase/Code/R/
+-rw-r--r-- root/root 91 2011-11-02 06:02 ./usr/lib/R/site-library/Biobase/Code/R/get at PKGNAME@.R
+drwxr-xr-x root/root 0 2011-11-02 06:03 ./usr/share/
+drwxr-xr-x root/root 0 2011-11-02 06:03 ./usr/share/doc/
+drwxr-xr-x root/root 0 2011-11-02 06:03 ./usr/share/doc/r-bioc-biobase/
+-rw-r--r-- root/root 1380 2011-10-31 23:32 ./usr/share/doc/r-bioc-biobase/NEWS.gz
+-rw-r--r-- root/root 380 2011-11-02 06:02 ./usr/share/doc/r-bioc-biobase/changelog.Debian.gz
+-rw-r--r-- root/root 10574 2011-11-02 06:02 ./usr/share/doc/r-bioc-biobase/copyright
+-rw-r--r-- root/root 392 2011-11-02 06:02 ./usr/share/doc/r-bioc-biobase/README.Debian
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -949,7 +1003,7 @@ Built successfully
│ Post Build │
└──────────────────────────────────────────────────────────────────────────────┘
-Purging /var/lib/schroot/mount/sid-i386-sbuild-c902895f-1c56-4c6b-b7f0-a178df15f556/build/buildd-r-bioc-biobase_2.12.2-1-i386-DK1186
+Purging /var/lib/schroot/mount/sid-i386-sbuild-47fc1e33-518b-4c45-b1d1-7f0a350324fd/build/buildd-r-bioc-biobase_2.14.0-1-i386-RCJnOo
Not cleaning session: cloned chroot in use
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -957,18 +1011,18 @@ Not cleaning session: cloned chroot in use
└──────────────────────────────────────────────────────────────────────────────┘
Architecture: i386
-Build-Space: 10092
-Build-Time: 23
+Build-Space: 9144
+Build-Time: 22
Distribution: sid
-Install-Time: 121
-Job: r-bioc-biobase_2.12.2-1
+Install-Time: 129
+Job: r-bioc-biobase_2.14.0-1
Package: r-bioc-biobase
-Package-Time: 175
-Source-Version: 2.12.2-1
-Space: 10092
+Package-Time: 181
+Source-Version: 2.14.0-1
+Space: 9144
Status: successful
-Version: 2.12.2-1
+Version: 2.14.0-1
────────────────────────────────────────────────────────────────────────────────
-Finished at 20110804-0026
-Build needed 00:02:55, 10092k disc space
+Finished at 20111102-0603
+Build needed 00:03:01, 9144k disc space
Signature with key 'E4786BDC' requested:
diff --git a/ia64.log b/ia64.log
index 1aeaaa7..8b07fa6 100644
--- a/ia64.log
+++ b/ia64.log
@@ -1,67 +1,66 @@
-From buildd at alkman.debian.org Thu Aug 04 00:30:38 2011
-Return-path: <buildd at alkman.debian.org>
-Received: from kokkonen.debian.org ([2001:41b8:202:deb:1a1a:0:52c3:4b61])
+From buildd at mundy.debian.org Wed Nov 02 09:39:53 2011
+Return-path: <buildd at mundy.debian.org>
+Received: from merikanto.debian.org ([2001:858:2:2:216:35ff:fec4:a49a])
from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
- CN=kokkonen.debian.org,
- EMAIL=hostmaster at kokkonen.debian.org (verified)
+ CN=merikanto.debian.org,
+ EMAIL=hostmaster at merikanto.debian.org (verified)
by grieg.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
- (Exim 4.72) (envelope-from <buildd at alkman.debian.org>)
- id 1Qolpe-0004e4-7F
- for logs at buildd.debian.org; Thu, 04 Aug 2011 00:30:38 +0000
-Received: from alkman.debian.org ([192.25.206.63])
+ (Exim 4.72) (envelope-from <buildd at mundy.debian.org>)
+ id 1RLXIW-0002XH-Vg
+ for logs at buildd.debian.org; Wed, 02 Nov 2011 09:39:53 +0000
+Received: from mundy.debian.org ([192.25.206.62])
from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
- CN=alkman.debian.org, EMAIL=hostmaster at alkman.debian.org (verified)
- by kokkonen.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
- (Exim 4.72) (envelope-from <buildd at alkman.debian.org>)
- id 1Qolpc-0004NY-MY
- for logs at buildd.debian.org; Thu, 04 Aug 2011 00:30:37 +0000
-Received: from buildd by alkman.debian.org with local (Exim 4.72)
- (envelope-from <buildd at alkman.debian.org>)
- id 1Qolpa-0000o6-6U; Thu, 04 Aug 2011 00:30:34 +0000
-Date: Thu, 04 Aug 2011 00:30:34 +0000
-Message-Id: <E1Qolpa-0000o6-6U at alkman.debian.org>
-From: buildd on alkman <buildd at alkman.debian.org>
-To: buildd-porters at alkman.debian.org,logs at buildd.debian.org
-Subject: Log for successful build of r-bioc-biobase_2.12.2-1 on ia64 (dist=sid)
+ CN=mundy.debian.org, EMAIL=hostmaster at mundy.debian.org (verified)
+ by merikanto.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
+ (Exim 4.72) (envelope-from <buildd at mundy.debian.org>)
+ id 1RLXIV-0001Wx-Md; Wed, 02 Nov 2011 09:39:52 +0000
+Received: from buildd by mundy.debian.org with local (Exim 4.72)
+ (envelope-from <buildd at mundy.debian.org>)
+ id 1RLXIT-0003Z1-8M; Wed, 02 Nov 2011 09:39:49 +0000
+Date: Wed, 02 Nov 2011 09:39:49 +0000
+Message-Id: <E1RLXIT-0003Z1-8M at mundy.debian.org>
+From: buildd on mundy <buildd at mundy.debian.org>
+To: dannf at master.debian.org,logs at buildd.debian.org
+Subject: Log for successful build of r-bioc-biobase_2.14.0-1 on ia64 (dist=sid)
Content-Type: text/plain; charset=UTF-8
Content-Transfer-Encoding: 8bit
Delivered-To: logs at buildd.debian.org
-sbuild (Debian sbuild) 0.61.0 (23 Feb 2011) on alkman.debian.org
+sbuild (Debian sbuild) 0.61.0 (23 Feb 2011) on mundy.debian.org
╔══════════════════════════════════════════════════════════════════════════════╗
-║ r-bioc-biobase 2.12.2-1 (ia64) 04 Aug 2011 00:24 ║
+║ r-bioc-biobase 2.14.0-1 (ia64) 02 Nov 2011 09:34 ║
╚══════════════════════════════════════════════════════════════════════════════╝
Package: r-bioc-biobase
-Version: 2.12.2-1
-Source Version: 2.12.2-1
+Version: 2.14.0-1
+Source Version: 2.14.0-1
Architecture: ia64
Get:1 http://spohr.debian.org unstable InRelease [146 kB]
Get:2 http://incoming.debian.org unstable InRelease [146 kB]
-Get:3 http://spohr.debian.org unstable/main Sources [5403 kB]
-Get:4 http://spohr.debian.org unstable/contrib Sources [51.3 kB]
-Get:5 http://spohr.debian.org unstable/non-free Sources [96.3 kB]
-Get:6 http://spohr.debian.org unstable/main ia64 Packages [7318 kB]
+Get:3 http://spohr.debian.org unstable/main Sources [5891 kB]
+Get:4 http://spohr.debian.org unstable/contrib Sources [56.9 kB]
+Get:5 http://spohr.debian.org unstable/non-free Sources [104 kB]
+Get:6 http://spohr.debian.org unstable/main ia64 Packages [7528 kB]
Ign http://incoming.debian.org InRelease
Get:7 http://incoming.debian.org Release.gpg [836 B]
-Get:8 http://incoming.debian.org unstable/main Sources [5403 kB]
-Get:9 http://spohr.debian.org unstable/contrib ia64 Packages [53.8 kB]
+Get:8 http://incoming.debian.org unstable/main Sources [5891 kB]
+Get:9 http://spohr.debian.org unstable/contrib ia64 Packages [55.9 kB]
Ign http://spohr.debian.org unstable/contrib TranslationIndex
Get:10 http://spohr.debian.org unstable/main TranslationIndex [2045 B]
Ign http://spohr.debian.org unstable/contrib Translation-en
-Get:11 http://incoming.debian.org unstable/contrib Sources [51.3 kB]
-Get:12 http://incoming.debian.org unstable/non-free Sources [96.3 kB]
-Get:13 http://incoming.debian.org unstable/main ia64 Packages [7318 kB]
-Get:14 http://incoming.debian.org unstable/contrib ia64 Packages [53.8 kB]
+Get:11 http://incoming.debian.org unstable/contrib Sources [56.9 kB]
+Get:12 http://incoming.debian.org unstable/non-free Sources [104 kB]
+Get:13 http://incoming.debian.org unstable/main ia64 Packages [7528 kB]
+Get:14 http://incoming.debian.org unstable/contrib ia64 Packages [55.9 kB]
Ign http://incoming.debian.org unstable/contrib TranslationIndex
Get:15 http://incoming.debian.org unstable/main TranslationIndex [2045 B]
Get:16 http://incoming.debian.org Release [1604 B]
-Get:17 http://incoming.debian.org Sources [30.7 kB]
-Get:18 http://incoming.debian.org Packages [218 kB]
+Get:17 http://incoming.debian.org Sources [53.1 kB]
+Get:18 http://incoming.debian.org Packages [466 kB]
Ign http://incoming.debian.org unstable/contrib Translation-en
Ign http://incoming.debian.org Translation-en
-Fetched 26.4 MB in 24s (1075 kB/s)
+Fetched 28.1 MB in 19s (1455 kB/s)
Reading package lists...
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -82,11 +81,11 @@ Building dependency tree...
Reading state information...
NOTICE: 'r-bioc-biobase' packaging is maintained in the 'Git' version control system at:
git://git.debian.org/git/debian-med/r-bioc-biobase.git
-Need to get 2229 kB of source archives.
-Get:1 http://incoming.debian.org/buildd-unstable/ r-bioc-biobase 2.12.2-1 (dsc) [1944 B]
-Get:2 http://incoming.debian.org/buildd-unstable/ r-bioc-biobase 2.12.2-1 (tar) [2222 kB]
-Get:3 http://incoming.debian.org/buildd-unstable/ r-bioc-biobase 2.12.2-1 (diff) [5417 B]
-Fetched 2229 kB in 1s (1521 kB/s)
+Need to get 1934 kB of source archives.
+Get:1 http://spohr.debian.org/debian/ unstable/main r-bioc-biobase 2.14.0-1 (dsc) [2004 B]
+Get:2 http://spohr.debian.org/debian/ unstable/main r-bioc-biobase 2.14.0-1 (tar) [1926 kB]
+Get:3 http://spohr.debian.org/debian/ unstable/main r-bioc-biobase 2.14.0-1 (diff) [5645 B]
+Fetched 1934 kB in 0s (12.4 MB/s)
Download complete and in download only mode
Check arch
@@ -100,78 +99,89 @@ Check arch
Build-Depends: build-essential, fakeroot
Checking for already installed dependencies...
build-essential: already installed (11.5)
-fakeroot: already installed (1.16-1)
+fakeroot: already installed (1.18.1-1)
Checking for dependency conflicts...
Installing positive dependencies:
Reading package lists...
Building dependency tree...
Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 31 not upgraded.
+The following packages were automatically installed and are no longer required:
+ libppl9 libpwl5 libppl-c4 libcloog-ppl0 libgmpxx4ldbl
+Use 'apt-get autoremove' to remove them.
+0 upgraded, 0 newly installed, 0 to remove and 46 not upgraded.
Removing negative dependencies:
Reading package lists...
Building dependency tree...
Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 31 not upgraded.
+The following packages were automatically installed and are no longer required:
+ libppl9 libpwl5 libppl-c4 libcloog-ppl0 libgmpxx4ldbl
+Use 'apt-get autoremove' to remove them.
+0 upgraded, 0 newly installed, 0 to remove and 46 not upgraded.
Checking correctness of dependencies...
┌──────────────────────────────────────────────────────────────────────────────┐
│ Install r-bioc-biobase build dependencies (internal resolver) │
└──────────────────────────────────────────────────────────────────────────────┘
-Build-Depends: base-files, base-passwd, bash, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, ncurses-base, ncurses-bin, perl-base, sed, login, sysvinit-utils, sysvinit, tar, bsdutils, mount, util-linux, libc6.1-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), cdbs, debhelper (>= 8), r-base-dev
+Build-Depends: base-files, base-passwd, bash, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, ncurses-base, ncurses-bin, perl-base, sed, login, sysvinit-utils, sysvinit, tar, bsdutils, mount, util-linux, libc6.1-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), cdbs, debhelper (>= 8), r-base-dev (>= 2.10)
Checking for already installed dependencies...
-base-files: already installed (6.4)
+base-files: already installed (6.5)
base-passwd: already installed (3.5.23)
bash: already installed (4.1-3)
-coreutils: already installed (8.5-1)
-dash: already installed (0.5.5.1-7.4)
-debianutils: already installed (4.0.2)
+coreutils: already installed (8.13-3)
+dash: already installed (0.5.7-2)
+debianutils: already installed (4.0.3)
diffutils: already installed (1:3.0-1)
-dpkg: already installed (1.16.0.3)
+dpkg: already installed (1.16.1)
e2fsprogs: already installed (1.42~WIP-2011-07-02-1)
findutils: already installed (4.4.2-1+b1)
-grep: already installed (2.9-1)
+grep: already installed (2.9-2)
gzip: already installed (1.4-1)
hostname: already installed (3.06)
-ncurses-base: already installed (5.9-1)
-ncurses-bin: already installed (5.9-1)
-perl-base: already installed (5.12.4-1)
+ncurses-base: already installed (5.9-2)
+ncurses-bin: already installed (5.9-2)
+perl-base: already installed (5.12.4-4)
sed: already installed (4.2.1-9)
login: already installed (1:4.1.4.2+svn3283-3)
sysvinit-utils: already installed (2.88dsf-13.11)
sysvinit: already installed (2.88dsf-13.11)
-tar: already installed (1.25-3)
-bsdutils: already installed (1:2.19.1-4)
-mount: already installed (2.19.1-4)
-util-linux: already installed (2.19.1-4)
-libc6.1-dev: already installed (2.13-10)
-gcc: already installed (4:4.6.1-2 >= 4:4.4.3 is satisfied)
-g++: already installed (4:4.6.1-2 >= 4:4.4.3 is satisfied)
+tar: already installed (1.26-2)
+bsdutils: already installed (1:2.19.1-5)
+mount: already installed (2.19.1-5)
+util-linux: already installed (2.19.1-5)
+libc6.1-dev: already installed (2.13-21)
+gcc: already installed (4:4.6.1-3 >= 4:4.4.3 is satisfied)
+g++: already installed (4:4.6.1-3 >= 4:4.4.3 is satisfied)
make: already installed (3.81-8.1)
-dpkg-dev: already installed (1.16.0.3 >= 1.13.5 is satisfied)
+dpkg-dev: already installed (1.16.1 >= 1.13.5 is satisfied)
cdbs: missing
debhelper: missing
-Using default version 8.9.3
+Using default version 8.9.8
r-base-dev: missing
+Using default version 2.14.0-1
Checking for dependency conflicts...
Installing positive dependencies: cdbs debhelper r-base-dev
Reading package lists...
Building dependency tree...
Reading state information...
+The following packages were automatically installed and are no longer required:
+ libppl9 libpwl5 libppl-c4 libcloog-ppl0 libgmpxx4ldbl
+Use 'apt-get autoremove' to remove them.
The following extra packages will be installed:
bsdmainutils cpp-4.6 dpatch file fontconfig fontconfig-config g++-4.6
gcc-4.6 gcc-4.6-base gettext gettext-base gfortran gfortran-4.6 groff-base
html2text intltool-debian libblas-dev libblas3gf libbz2-dev libcairo2
libcroco3 libdatrie1 libexpat1 libfontconfig1 libfreetype6 libgcc1
- libgfortran3 libglib2.0-0 libgomp1 libice6 libjpeg62 libjpeg8 libjpeg8-dev
- liblapack-dev liblapack3gf libmagic1 libncurses5-dev libpango1.0-0
- libpaper-utils libpaper1 libpcre3 libpcre3-dev libpcrecpp0 libpipeline1
- libpixman-1-0 libpng12-0 libpng12-dev libquadmath0 libreadline-dev
- libreadline6-dev libsm6 libstdc++6 libstdc++6-4.6-dev libthai-data libthai0
- libtiff4 libunistring0 libx11-6 libx11-data libxau6 libxcb-render0
- libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxrender1 libxss1
- libxt6 man-db po-debconf r-base-core tcl8.5 tk8.5 ttf-dejavu-core ucf unzip
- x11-common xdg-utils zip zlib1g-dev
+ libgfortran3 libglib2.0-0 libgomp1 libice6 libjpeg8 libjpeg8-dev
+ liblapack-dev liblapack3gf liblzma5 libmagic1 libmpfr4 libncurses5-dev
+ libpango1.0-0 libpaper-utils libpaper1 libpcre3 libpcre3-dev libpcrecpp0
+ libpipeline1 libpixman-1-0 libpng12-0 libpng12-dev libquadmath0
+ libreadline-dev libreadline6 libreadline6-dev libsm6 libstdc++6
+ libstdc++6-4.6-dev libthai-data libthai0 libtiff4 libtinfo-dev libunistring0
+ libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6
+ libxext6 libxft2 libxml2 libxrender1 libxss1 libxt6 man-db po-debconf
+ r-base-core tcl8.5 tk8.5 ttf-dejavu-core ucf unzip x11-common xdg-utils zip
+ zlib1g-dev
Suggested packages:
wamerican wordlist whois vacation devscripts gcc-4.6-locales dh-make curl
defoma gcc-4.6-doc libstdc++6-4.6-dbg libmudflap0-4.6-dev libgcc1-dbg
@@ -188,326 +198,346 @@ The following NEW packages will be installed:
bsdmainutils cdbs debhelper dpatch file fontconfig fontconfig-config gettext
gettext-base gfortran gfortran-4.6 groff-base html2text intltool-debian
libblas-dev libblas3gf libbz2-dev libcairo2 libcroco3 libdatrie1 libexpat1
- libfontconfig1 libfreetype6 libgfortran3 libglib2.0-0 libice6 libjpeg62
- libjpeg8 libjpeg8-dev liblapack-dev liblapack3gf libmagic1 libncurses5-dev
+ libfontconfig1 libfreetype6 libgfortran3 libglib2.0-0 libice6 libjpeg8
+ libjpeg8-dev liblapack-dev liblapack3gf liblzma5 libmagic1 libncurses5-dev
libpango1.0-0 libpaper-utils libpaper1 libpcre3 libpcre3-dev libpcrecpp0
libpipeline1 libpixman-1-0 libpng12-0 libpng12-dev libreadline-dev
- libreadline6-dev libsm6 libthai-data libthai0 libtiff4 libunistring0
- libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6
- libxext6 libxft2 libxml2 libxrender1 libxss1 libxt6 man-db po-debconf
- r-base-core r-base-dev tcl8.5 tk8.5 ttf-dejavu-core ucf unzip x11-common
- xdg-utils zip zlib1g-dev
+ libreadline6-dev libsm6 libthai-data libthai0 libtiff4 libtinfo-dev
+ libunistring0 libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0
+ libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxrender1 libxss1 libxt6 man-db
+ po-debconf r-base-core r-base-dev tcl8.5 tk8.5 ttf-dejavu-core ucf unzip
+ x11-common xdg-utils zip zlib1g-dev
The following packages will be upgraded:
- cpp-4.6 g++-4.6 gcc-4.6 gcc-4.6-base libgcc1 libgomp1 libquadmath0
- libstdc++6 libstdc++6-4.6-dev
-9 upgraded, 76 newly installed, 0 to remove and 22 not upgraded.
-Need to get 88.2 MB of archives.
-After this operation, 195 MB of additional disk space will be used.
-Get:1 http://spohr.debian.org/debian/ unstable/main libgomp1 ia64 4.6.1-5 [36.3 kB]
-Get:2 http://spohr.debian.org/debian/ unstable/main gcc-4.6-base ia64 4.6.1-5 [133 kB]
-Get:3 http://spohr.debian.org/debian/ unstable/main libgcc1 ia64 1:4.6.1-5 [44.9 kB]
-Get:4 http://spohr.debian.org/debian/ unstable/main cpp-4.6 ia64 4.6.1-5 [6032 kB]
-Get:5 http://spohr.debian.org/debian/ unstable/main libquadmath0 ia64 4.6.1-5 [166 kB]
-Get:6 http://spohr.debian.org/debian/ unstable/main libstdc++6-4.6-dev ia64 4.6.1-5 [1827 kB]
-Get:7 http://spohr.debian.org/debian/ unstable/main g++-4.6 ia64 4.6.1-5 [7255 kB]
-Get:8 http://spohr.debian.org/debian/ unstable/main gcc-4.6 ia64 4.6.1-5 [6374 kB]
-Get:9 http://spohr.debian.org/debian/ unstable/main libstdc++6 ia64 4.6.1-5 [435 kB]
-Get:10 http://spohr.debian.org/debian/ unstable/main libpipeline1 ia64 1.2.0-3 [47.8 kB]
-Get:11 http://spohr.debian.org/debian/ unstable/main libdatrie1 ia64 0.2.4-3 [31.5 kB]
-Get:12 http://spohr.debian.org/debian/ unstable/main libexpat1 ia64 2.0.1-7 [213 kB]
-Get:13 http://spohr.debian.org/debian/ unstable/main libfreetype6 ia64 2.4.4-2 [598 kB]
-Get:14 http://spohr.debian.org/debian/ unstable/main ucf all 3.0025+nmu2 [70.6 kB]
-Get:15 http://spohr.debian.org/debian/ unstable/main ttf-dejavu-core all 2.33-1 [1550 kB]
-Get:16 http://spohr.debian.org/debian/ unstable/main fontconfig-config all 2.8.0-3 [221 kB]
-Get:17 http://spohr.debian.org/debian/ unstable/main libfontconfig1 ia64 2.8.0-3 [320 kB]
-Get:18 http://spohr.debian.org/debian/ unstable/main libgfortran3 ia64 4.6.1-5 [462 kB]
-Get:19 http://spohr.debian.org/debian/ unstable/main x11-common all 1:7.6+7 [275 kB]
-Get:20 http://spohr.debian.org/debian/ unstable/main libice6 ia64 2:1.0.7-2 [75.8 kB]
-Get:21 http://spohr.debian.org/debian/ unstable/main libpixman-1-0 ia64 0.22.2-1 [413 kB]
-Get:22 http://spohr.debian.org/debian/ unstable/main libpng12-0 ia64 1.2.46-3 [222 kB]
-Get:23 http://spohr.debian.org/debian/ unstable/main libxau6 ia64 1:1.0.6-3 [18.4 kB]
-Get:24 http://spohr.debian.org/debian/ unstable/main libxdmcp6 ia64 1:1.1.0-3 [25.8 kB]
-Get:25 http://spohr.debian.org/debian/ unstable/main libxcb1 ia64 1.7-3 [52.1 kB]
-Get:26 http://spohr.debian.org/debian/ unstable/main libx11-data all 2:1.4.4-1 [183 kB]
-Get:27 http://spohr.debian.org/debian/ unstable/main libx11-6 ia64 2:1.4.4-1 [1080 kB]
-Get:28 http://spohr.debian.org/debian/ unstable/main libxcb-render0 ia64 1.7-3 [18.1 kB]
-Get:29 http://spohr.debian.org/debian/ unstable/main libxcb-shm0 ia64 1.7-3 [10.4 kB]
-Get:30 http://spohr.debian.org/debian/ unstable/main libxrender1 ia64 1:0.9.6-2 [41.8 kB]
-Get:31 http://spohr.debian.org/debian/ unstable/main libcairo2 ia64 1.10.2-6.1 [1165 kB]
-Get:32 http://spohr.debian.org/debian/ unstable/main libpcre3 ia64 8.12-3 [316 kB]
-Get:33 http://spohr.debian.org/debian/ unstable/main libglib2.0-0 ia64 2.28.6-1 [1973 kB]
-Get:34 http://spohr.debian.org/debian/ unstable/main libthai-data all 0.1.15-2 [201 kB]
-Get:35 http://spohr.debian.org/debian/ unstable/main libthai0 ia64 0.1.15-2 [47.4 kB]
-Get:36 http://spohr.debian.org/debian/ unstable/main libxft2 ia64 2.2.0-3 [77.5 kB]
-Get:37 http://spohr.debian.org/debian/ unstable/main fontconfig ia64 2.8.0-3 [340 kB]
-Get:38 http://spohr.debian.org/debian/ unstable/main libpango1.0-0 ia64 1.28.4-2 [559 kB]
-Get:39 http://spohr.debian.org/debian/ unstable/main libsm6 ia64 2:1.2.0-2 [36.0 kB]
-Get:40 http://spohr.debian.org/debian/ unstable/main libxext6 ia64 2:1.3.0-3 [68.0 kB]
-Get:41 http://spohr.debian.org/debian/ unstable/main libxt6 ia64 1:1.1.1-2 [286 kB]
-Get:42 http://spohr.debian.org/debian/ unstable/main bsdmainutils ia64 8.2.3 [238 kB]
-Get:43 http://spohr.debian.org/debian/ unstable/main groff-base ia64 1.21-6 [1402 kB]
-Get:44 http://spohr.debian.org/debian/ unstable/main man-db ia64 2.6.0.2-2 [1118 kB]
-Get:45 http://spohr.debian.org/debian/ unstable/main libmagic1 ia64 5.04-5+b1 [263 kB]
-Get:46 http://spohr.debian.org/debian/ unstable/main file ia64 5.04-5+b1 [52.0 kB]
-Get:47 http://spohr.debian.org/debian/ unstable/main gettext-base ia64 0.18.1.1-3 [174 kB]
-Get:48 http://spohr.debian.org/debian/ unstable/main libxml2 ia64 2.7.8.dfsg-4 [1177 kB]
-Get:49 http://spohr.debian.org/debian/ unstable/main html2text ia64 1.3.2a-15 [134 kB]
-Get:50 http://spohr.debian.org/debian/ unstable/main libcroco3 ia64 0.6.2-1 [155 kB]
-Get:51 http://spohr.debian.org/debian/ unstable/main libunistring0 ia64 0.9.3-4 [467 kB]
-Get:52 http://spohr.debian.org/debian/ unstable/main gettext ia64 0.18.1.1-3 [2453 kB]
-Get:53 http://spohr.debian.org/debian/ unstable/main intltool-debian all 0.35.0+20060710.1 [30.8 kB]
-Get:54 http://spohr.debian.org/debian/ unstable/main po-debconf all 1.0.16+nmu1 [223 kB]
-Get:55 http://spohr.debian.org/debian/ unstable/main debhelper all 8.9.3 [561 kB]
-Get:56 http://spohr.debian.org/debian/ unstable/main cdbs all 0.4.96 [75.8 kB]
-Get:57 http://spohr.debian.org/debian/ unstable/main dpatch all 2.0.31 [92.3 kB]
-Get:58 http://spohr.debian.org/debian/ unstable/main gfortran-4.6 ia64 4.6.1-5 [7163 kB]
-Get:59 http://spohr.debian.org/debian/ unstable/main gfortran ia64 4:4.6.1-2 [1120 B]
-Get:60 http://spohr.debian.org/debian/ unstable/main libblas3gf ia64 1.2-8 [325 kB]
-Get:61 http://spohr.debian.org/debian/ unstable/main libblas-dev ia64 1.2-8 [365 kB]
-Get:62 http://spohr.debian.org/debian/ unstable/main libbz2-dev ia64 1.0.5-6 [51.8 kB]
-Get:63 http://spohr.debian.org/debian/ unstable/main libjpeg62 ia64 6b1-2 [154 kB]
-Get:64 http://spohr.debian.org/debian/ unstable/main libjpeg8 ia64 8c-2 [240 kB]
-Get:65 http://spohr.debian.org/debian/ unstable/main libjpeg8-dev ia64 8c-2 [351 kB]
-Get:66 http://spohr.debian.org/debian/ unstable/main liblapack3gf ia64 3.2.1-8 [7046 kB]
-Get:67 http://spohr.debian.org/debian/ unstable/main liblapack-dev ia64 3.2.1-8 [7753 kB]
-Get:68 http://spohr.debian.org/debian/ unstable/main libncurses5-dev ia64 5.9-1 [614 kB]
-Get:69 http://spohr.debian.org/debian/ unstable/main libpaper1 ia64 1.1.24+nmu1 [22.9 kB]
-Get:70 http://spohr.debian.org/debian/ unstable/main libpaper-utils ia64 1.1.24+nmu1 [19.7 kB]
-Get:71 http://spohr.debian.org/debian/ unstable/main libpcrecpp0 ia64 8.12-3 [116 kB]
-Get:72 http://spohr.debian.org/debian/ unstable/main libpcre3-dev ia64 8.12-3 [361 kB]
-Get:73 http://spohr.debian.org/debian/ unstable/main zlib1g-dev ia64 1:1.2.3.4.dfsg-3 [224 kB]
-Get:74 http://spohr.debian.org/debian/ unstable/main libpng12-dev ia64 1.2.46-3 [306 kB]
-Get:75 http://spohr.debian.org/debian/ unstable/main libreadline6-dev ia64 6.2-2 [339 kB]
-Get:76 http://spohr.debian.org/debian/ unstable/main libreadline-dev ia64 6.2-2 [880 B]
-Get:77 http://spohr.debian.org/debian/ unstable/main libtiff4 ia64 3.9.5-1 [270 kB]
-Get:78 http://spohr.debian.org/debian/ unstable/main libxss1 ia64 1:1.2.1-1 [18.8 kB]
-Get:79 http://spohr.debian.org/debian/ unstable/main zip ia64 3.0-4 [445 kB]
-Get:80 http://spohr.debian.org/debian/ unstable/main unzip ia64 6.0-5 [263 kB]
-Get:81 http://spohr.debian.org/debian/ unstable/main xdg-utils all 1.1.0~rc1-2 [70.2 kB]
-Get:82 http://spohr.debian.org/debian/ unstable/main tcl8.5 ia64 8.5.10-1 [1902 kB]
-Get:83 http://spohr.debian.org/debian/ unstable/main tk8.5 ia64 8.5.10-1 [1520 kB]
-Get:84 http://spohr.debian.org/debian/ unstable/main r-base-core ia64 2.13.1-1 [16.3 MB]
-Get:85 http://spohr.debian.org/debian/ unstable/main r-base-dev all 2.13.1-1 [3490 B]
+ cpp-4.6 g++-4.6 gcc-4.6 gcc-4.6-base libgcc1 libgomp1 libmpfr4 libquadmath0
+ libreadline6 libstdc++6 libstdc++6-4.6-dev
+11 upgraded, 77 newly installed, 0 to remove and 35 not upgraded.
+Need to get 93.5 MB of archives.
+After this operation, 178 MB of additional disk space will be used.
+Get:1 http://spohr.debian.org/debian/ unstable/main libreadline6 ia64 6.2-7 [217 kB]
+Get:2 http://spohr.debian.org/debian/ unstable/main libgomp1 ia64 4.6.2-3 [36.3 kB]
+Get:3 http://spohr.debian.org/debian/ unstable/main gcc-4.6-base ia64 4.6.2-3 [136 kB]
+Get:4 http://spohr.debian.org/debian/ unstable/main libgcc1 ia64 1:4.6.2-3 [44.9 kB]
+Get:5 http://spohr.debian.org/debian/ unstable/main libmpfr4 ia64 3.1.0-2 [646 kB]
+Get:6 http://spohr.debian.org/debian/ unstable/main cpp-4.6 ia64 4.6.2-3 [6030 kB]
+Get:7 http://spohr.debian.org/debian/ unstable/main libquadmath0 ia64 4.6.2-3 [166 kB]
+Get:8 http://spohr.debian.org/debian/ unstable/main libstdc++6-4.6-dev ia64 4.6.2-3 [1866 kB]
+Get:9 http://spohr.debian.org/debian/ unstable/main g++-4.6 ia64 4.6.2-3 [7210 kB]
+Get:10 http://spohr.debian.org/debian/ unstable/main gcc-4.6 ia64 4.6.2-3 [6294 kB]
+Get:11 http://spohr.debian.org/debian/ unstable/main libstdc++6 ia64 4.6.2-3 [436 kB]
+Get:12 http://spohr.debian.org/debian/ unstable/main libpipeline1 ia64 1.2.0-4 [46.7 kB]
+Get:13 http://spohr.debian.org/debian/ unstable/main liblzma5 ia64 5.1.1alpha+20110809-3 [231 kB]
+Get:14 http://spohr.debian.org/debian/ unstable/main libpcre3 ia64 8.12-4 [272 kB]
+Get:15 http://spohr.debian.org/debian/ unstable/main libglib2.0-0 ia64 2.28.8-1 [1992 kB]
+Get:16 http://spohr.debian.org/debian/ unstable/main libxml2 ia64 2.7.8.dfsg-5 [1177 kB]
+Get:17 http://spohr.debian.org/debian/ unstable/main libcroco3 ia64 0.6.2-2 [147 kB]
+Get:18 http://spohr.debian.org/debian/ unstable/main libdatrie1 ia64 0.2.4-3 [31.5 kB]
+Get:19 http://spohr.debian.org/debian/ unstable/main libexpat1 ia64 2.0.1-7.1 [212 kB]
+Get:20 http://spohr.debian.org/debian/ unstable/main libfreetype6 ia64 2.4.7-2 [617 kB]
+Get:21 http://spohr.debian.org/debian/ unstable/main ucf all 3.0025+nmu2 [70.6 kB]
+Get:22 http://spohr.debian.org/debian/ unstable/main ttf-dejavu-core all 2.33-2 [1552 kB]
+Get:23 http://spohr.debian.org/debian/ unstable/main fontconfig-config all 2.8.0-3 [221 kB]
+Get:24 http://spohr.debian.org/debian/ unstable/main libfontconfig1 ia64 2.8.0-3 [320 kB]
+Get:25 http://spohr.debian.org/debian/ unstable/main libgfortran3 ia64 4.6.2-3 [461 kB]
+Get:26 http://spohr.debian.org/debian/ unstable/main x11-common all 1:7.6+9 [276 kB]
+Get:27 http://spohr.debian.org/debian/ unstable/main libice6 ia64 2:1.0.7-2 [75.8 kB]
+Get:28 http://spohr.debian.org/debian/ unstable/main libpixman-1-0 ia64 0.23.8-1 [437 kB]
+Get:29 http://spohr.debian.org/debian/ unstable/main libpng12-0 ia64 1.2.46-3 [222 kB]
+Get:30 http://spohr.debian.org/debian/ unstable/main libxau6 ia64 1:1.0.6-3 [18.4 kB]
+Get:31 http://spohr.debian.org/debian/ unstable/main libxdmcp6 ia64 1:1.1.0-3 [25.8 kB]
+Get:32 http://spohr.debian.org/debian/ unstable/main libxcb1 ia64 1.7-3 [52.1 kB]
+Get:33 http://spohr.debian.org/debian/ unstable/main libx11-data all 2:1.4.4-2 [183 kB]
+Get:34 http://spohr.debian.org/debian/ unstable/main libx11-6 ia64 2:1.4.4-2 [1080 kB]
+Get:35 http://spohr.debian.org/debian/ unstable/main libxcb-render0 ia64 1.7-3 [18.1 kB]
+Get:36 http://spohr.debian.org/debian/ unstable/main libxcb-shm0 ia64 1.7-3 [10.4 kB]
+Get:37 http://spohr.debian.org/debian/ unstable/main libxrender1 ia64 1:0.9.6-2 [41.8 kB]
+Get:38 http://spohr.debian.org/debian/ unstable/main libcairo2 ia64 1.10.2-6.1 [1165 kB]
+Get:39 http://spohr.debian.org/debian/ unstable/main libthai-data all 0.1.15-2 [201 kB]
+Get:40 http://spohr.debian.org/debian/ unstable/main libthai0 ia64 0.1.15-2 [47.4 kB]
+Get:41 http://spohr.debian.org/debian/ unstable/main libxft2 ia64 2.2.0-3 [77.5 kB]
+Get:42 http://spohr.debian.org/debian/ unstable/main fontconfig ia64 2.8.0-3 [340 kB]
+Get:43 http://spohr.debian.org/debian/ unstable/main libpango1.0-0 ia64 1.29.4-2 [579 kB]
+Get:44 http://spohr.debian.org/debian/ unstable/main libpcrecpp0 ia64 8.12-4 [116 kB]
+Get:45 http://spohr.debian.org/debian/ unstable/main libsm6 ia64 2:1.2.0-2 [36.0 kB]
+Get:46 http://spohr.debian.org/debian/ unstable/main libjpeg8 ia64 8c-2 [240 kB]
+Get:47 http://spohr.debian.org/debian/ unstable/main libtiff4 ia64 3.9.5-2 [273 kB]
+Get:48 http://spohr.debian.org/debian/ unstable/main libunistring0 ia64 0.9.3-5 [463 kB]
+Get:49 http://spohr.debian.org/debian/ unstable/main libxext6 ia64 2:1.3.0-3 [68.0 kB]
+Get:50 http://spohr.debian.org/debian/ unstable/main libxss1 ia64 1:1.2.1-2 [19.0 kB]
+Get:51 http://spohr.debian.org/debian/ unstable/main libxt6 ia64 1:1.1.1-2 [286 kB]
+Get:52 http://spohr.debian.org/debian/ unstable/main bsdmainutils ia64 8.2.3 [238 kB]
+Get:53 http://spohr.debian.org/debian/ unstable/main groff-base ia64 1.21-6 [1402 kB]
+Get:54 http://spohr.debian.org/debian/ unstable/main man-db ia64 2.6.0.2-2 [1118 kB]
+Get:55 http://spohr.debian.org/debian/ unstable/main libmagic1 ia64 5.09-2 [271 kB]
+Get:56 http://spohr.debian.org/debian/ unstable/main file ia64 5.09-2 [54.4 kB]
+Get:57 http://spohr.debian.org/debian/ unstable/main gettext-base ia64 0.18.1.1-5 [173 kB]
+Get:58 http://spohr.debian.org/debian/ unstable/main cdbs all 0.4.99 [77.1 kB]
+Get:59 http://spohr.debian.org/debian/ unstable/main html2text ia64 1.3.2a-15 [134 kB]
+Get:60 http://spohr.debian.org/debian/ unstable/main gettext ia64 0.18.1.1-5 [2439 kB]
+Get:61 http://spohr.debian.org/debian/ unstable/main intltool-debian all 0.35.0+20060710.1 [30.8 kB]
+Get:62 http://spohr.debian.org/debian/ unstable/main po-debconf all 1.0.16+nmu1 [223 kB]
+Get:63 http://spohr.debian.org/debian/ unstable/main debhelper all 8.9.8 [552 kB]
+Get:64 http://spohr.debian.org/debian/ unstable/main dpatch all 2.0.33 [95.9 kB]
+Get:65 http://spohr.debian.org/debian/ unstable/main gfortran-4.6 ia64 4.6.2-3 [7116 kB]
+Get:66 http://spohr.debian.org/debian/ unstable/main gfortran ia64 4:4.6.1-3 [1118 B]
+Get:67 http://spohr.debian.org/debian/ unstable/main libblas3gf ia64 1.2.20110419-2 [313 kB]
+Get:68 http://spohr.debian.org/debian/ unstable/main libblas-dev ia64 1.2.20110419-2 [344 kB]
+Get:69 http://spohr.debian.org/debian/ unstable/main libbz2-dev ia64 1.0.5-7 [51.6 kB]
+Get:70 http://spohr.debian.org/debian/ unstable/main libjpeg8-dev ia64 8c-2 [351 kB]
+Get:71 http://spohr.debian.org/debian/ unstable/main liblapack3gf ia64 3.3.1-1 [7288 kB]
+Get:72 http://spohr.debian.org/debian/ unstable/main liblapack-dev ia64 3.3.1-1 [8033 kB]
+Get:73 http://spohr.debian.org/debian/ unstable/main libtinfo-dev ia64 5.9-2 [91.5 kB]
+Get:74 http://spohr.debian.org/debian/ unstable/main libncurses5-dev ia64 5.9-2 [519 kB]
+Get:75 http://spohr.debian.org/debian/ unstable/main libpaper1 ia64 1.1.24+nmu1 [22.9 kB]
+Get:76 http://spohr.debian.org/debian/ unstable/main libpaper-utils ia64 1.1.24+nmu1 [19.7 kB]
+Get:77 http://spohr.debian.org/debian/ unstable/main libpcre3-dev ia64 8.12-4 [362 kB]
+Get:78 http://spohr.debian.org/debian/ unstable/main zlib1g-dev ia64 1:1.2.3.4.dfsg-3 [224 kB]
+Get:79 http://spohr.debian.org/debian/ unstable/main libpng12-dev ia64 1.2.46-3 [306 kB]
+Get:80 http://spohr.debian.org/debian/ unstable/main libreadline6-dev ia64 6.2-7 [338 kB]
+Get:81 http://spohr.debian.org/debian/ unstable/main libreadline-dev ia64 6.2-7 [888 B]
+Get:82 http://spohr.debian.org/debian/ unstable/main zip ia64 3.0-4 [445 kB]
+Get:83 http://spohr.debian.org/debian/ unstable/main unzip ia64 6.0-5 [263 kB]
+Get:84 http://spohr.debian.org/debian/ unstable/main xdg-utils all 1.1.0~rc1-2 [70.2 kB]
+Get:85 http://spohr.debian.org/debian/ unstable/main tcl8.5 ia64 8.5.10-1 [1902 kB]
+Get:86 http://spohr.debian.org/debian/ unstable/main tk8.5 ia64 8.5.10-1 [1520 kB]
+Get:87 http://spohr.debian.org/debian/ unstable/main r-base-core ia64 2.14.0-1 [20.3 MB]
+Get:88 http://spohr.debian.org/debian/ unstable/main r-base-dev all 2.14.0-1 [3488 B]
debconf: delaying package configuration, since apt-utils is not installed
-Fetched 88.2 MB in 19s (4413 kB/s)
-(Reading database ... 10586 files and directories currently installed.)
-Preparing to replace libgomp1 4.6.1-4 (using .../libgomp1_4.6.1-5_ia64.deb) ...
+Fetched 93.5 MB in 7s (12.0 MB/s)
+(Reading database ... 10538 files and directories currently installed.)
+Preparing to replace libreadline6 6.2-5 (using .../libreadline6_6.2-7_ia64.deb) ...
+Unpacking replacement libreadline6 ...
+Setting up libreadline6 (6.2-7) ...
+(Reading database ... 10538 files and directories currently installed.)
+Preparing to replace libgomp1 4.6.1-13 (using .../libgomp1_4.6.2-3_ia64.deb) ...
Unpacking replacement libgomp1 ...
-Preparing to replace gcc-4.6-base 4.6.1-4 (using .../gcc-4.6-base_4.6.1-5_ia64.deb) ...
+Preparing to replace gcc-4.6-base 4.6.1-13 (using .../gcc-4.6-base_4.6.2-3_ia64.deb) ...
Unpacking replacement gcc-4.6-base ...
-Setting up gcc-4.6-base (4.6.1-5) ...
-(Reading database ... 10586 files and directories currently installed.)
-Preparing to replace libgcc1 1:4.6.1-4 (using .../libgcc1_1%3a4.6.1-5_ia64.deb) ...
+Setting up gcc-4.6-base (4.6.2-3) ...
+(Reading database ... 10539 files and directories currently installed.)
+Preparing to replace libgcc1 1:4.6.1-13 (using .../libgcc1_1%3a4.6.2-3_ia64.deb) ...
Unpacking replacement libgcc1 ...
-Setting up libgcc1 (1:4.6.1-5) ...
-(Reading database ... 10586 files and directories currently installed.)
-Preparing to replace cpp-4.6 4.6.1-4 (using .../cpp-4.6_4.6.1-5_ia64.deb) ...
+Setting up libgcc1 (1:4.6.2-3) ...
+(Reading database ... 10539 files and directories currently installed.)
+Preparing to replace libmpfr4 3.0.1-6 (using .../libmpfr4_3.1.0-2_ia64.deb) ...
+Unpacking replacement libmpfr4 ...
+Preparing to replace cpp-4.6 4.6.1-13 (using .../cpp-4.6_4.6.2-3_ia64.deb) ...
Unpacking replacement cpp-4.6 ...
-Preparing to replace libquadmath0 4.6.1-4 (using .../libquadmath0_4.6.1-5_ia64.deb) ...
+Preparing to replace libquadmath0 4.6.1-13 (using .../libquadmath0_4.6.2-3_ia64.deb) ...
Unpacking replacement libquadmath0 ...
-Preparing to replace libstdc++6-4.6-dev 4.6.1-4 (using .../libstdc++6-4.6-dev_4.6.1-5_ia64.deb) ...
+Preparing to replace libstdc++6-4.6-dev 4.6.1-13 (using .../libstdc++6-4.6-dev_4.6.2-3_ia64.deb) ...
Unpacking replacement libstdc++6-4.6-dev ...
-Preparing to replace g++-4.6 4.6.1-4 (using .../g++-4.6_4.6.1-5_ia64.deb) ...
+Preparing to replace g++-4.6 4.6.1-13 (using .../g++-4.6_4.6.2-3_ia64.deb) ...
Unpacking replacement g++-4.6 ...
-Preparing to replace gcc-4.6 4.6.1-4 (using .../gcc-4.6_4.6.1-5_ia64.deb) ...
+Preparing to replace gcc-4.6 4.6.1-13 (using .../gcc-4.6_4.6.2-3_ia64.deb) ...
Unpacking replacement gcc-4.6 ...
-Preparing to replace libstdc++6 4.6.1-4 (using .../libstdc++6_4.6.1-5_ia64.deb) ...
+Preparing to replace libstdc++6 4.6.1-13 (using .../libstdc++6_4.6.2-3_ia64.deb) ...
Unpacking replacement libstdc++6 ...
-Setting up libstdc++6 (4.6.1-5) ...
-Selecting previously deselected package libpipeline1.
-(Reading database ... 10586 files and directories currently installed.)
-Unpacking libpipeline1 (from .../libpipeline1_1.2.0-3_ia64.deb) ...
-Selecting previously deselected package libdatrie1.
+Setting up libstdc++6 (4.6.2-3) ...
+Selecting previously unselected package libpipeline1.
+(Reading database ... 10539 files and directories currently installed.)
+Unpacking libpipeline1 (from .../libpipeline1_1.2.0-4_ia64.deb) ...
+Selecting previously unselected package liblzma5.
+Unpacking liblzma5 (from .../liblzma5_5.1.1alpha+20110809-3_ia64.deb) ...
+Selecting previously unselected package libpcre3.
+Unpacking libpcre3 (from .../libpcre3_8.12-4_ia64.deb) ...
+Selecting previously unselected package libglib2.0-0.
+Unpacking libglib2.0-0 (from .../libglib2.0-0_2.28.8-1_ia64.deb) ...
+Selecting previously unselected package libxml2.
+Unpacking libxml2 (from .../libxml2_2.7.8.dfsg-5_ia64.deb) ...
+Selecting previously unselected package libcroco3.
+Unpacking libcroco3 (from .../libcroco3_0.6.2-2_ia64.deb) ...
+Selecting previously unselected package libdatrie1.
Unpacking libdatrie1 (from .../libdatrie1_0.2.4-3_ia64.deb) ...
-Selecting previously deselected package libexpat1.
-Unpacking libexpat1 (from .../libexpat1_2.0.1-7_ia64.deb) ...
-Selecting previously deselected package libfreetype6.
-Unpacking libfreetype6 (from .../libfreetype6_2.4.4-2_ia64.deb) ...
-Selecting previously deselected package ucf.
+Selecting previously unselected package libexpat1.
+Unpacking libexpat1 (from .../libexpat1_2.0.1-7.1_ia64.deb) ...
+Selecting previously unselected package libfreetype6.
+Unpacking libfreetype6 (from .../libfreetype6_2.4.7-2_ia64.deb) ...
+Selecting previously unselected package ucf.
Unpacking ucf (from .../ucf_3.0025+nmu2_all.deb) ...
Moving old data out of the way
-Selecting previously deselected package ttf-dejavu-core.
-Unpacking ttf-dejavu-core (from .../ttf-dejavu-core_2.33-1_all.deb) ...
-Selecting previously deselected package fontconfig-config.
+Selecting previously unselected package ttf-dejavu-core.
+Unpacking ttf-dejavu-core (from .../ttf-dejavu-core_2.33-2_all.deb) ...
+Selecting previously unselected package fontconfig-config.
Unpacking fontconfig-config (from .../fontconfig-config_2.8.0-3_all.deb) ...
-Selecting previously deselected package libfontconfig1.
+Selecting previously unselected package libfontconfig1.
Unpacking libfontconfig1 (from .../libfontconfig1_2.8.0-3_ia64.deb) ...
-Selecting previously deselected package libgfortran3.
-Unpacking libgfortran3 (from .../libgfortran3_4.6.1-5_ia64.deb) ...
-Selecting previously deselected package x11-common.
-Unpacking x11-common (from .../x11-common_1%3a7.6+7_all.deb) ...
-Selecting previously deselected package libice6.
+Selecting previously unselected package libgfortran3.
+Unpacking libgfortran3 (from .../libgfortran3_4.6.2-3_ia64.deb) ...
+Selecting previously unselected package x11-common.
+Unpacking x11-common (from .../x11-common_1%3a7.6+9_all.deb) ...
+Selecting previously unselected package libice6.
Unpacking libice6 (from .../libice6_2%3a1.0.7-2_ia64.deb) ...
-Selecting previously deselected package libpixman-1-0.
-Unpacking libpixman-1-0 (from .../libpixman-1-0_0.22.2-1_ia64.deb) ...
-Selecting previously deselected package libpng12-0.
+Selecting previously unselected package libpixman-1-0.
+Unpacking libpixman-1-0 (from .../libpixman-1-0_0.23.8-1_ia64.deb) ...
+Selecting previously unselected package libpng12-0.
Unpacking libpng12-0 (from .../libpng12-0_1.2.46-3_ia64.deb) ...
-Selecting previously deselected package libxau6.
+Selecting previously unselected package libxau6.
Unpacking libxau6 (from .../libxau6_1%3a1.0.6-3_ia64.deb) ...
-Selecting previously deselected package libxdmcp6.
+Selecting previously unselected package libxdmcp6.
Unpacking libxdmcp6 (from .../libxdmcp6_1%3a1.1.0-3_ia64.deb) ...
-Selecting previously deselected package libxcb1.
+Selecting previously unselected package libxcb1.
Unpacking libxcb1 (from .../libxcb1_1.7-3_ia64.deb) ...
-Selecting previously deselected package libx11-data.
-Unpacking libx11-data (from .../libx11-data_2%3a1.4.4-1_all.deb) ...
-Selecting previously deselected package libx11-6.
-Unpacking libx11-6 (from .../libx11-6_2%3a1.4.4-1_ia64.deb) ...
-Selecting previously deselected package libxcb-render0.
+Selecting previously unselected package libx11-data.
+Unpacking libx11-data (from .../libx11-data_2%3a1.4.4-2_all.deb) ...
+Selecting previously unselected package libx11-6.
+Unpacking libx11-6 (from .../libx11-6_2%3a1.4.4-2_ia64.deb) ...
+Selecting previously unselected package libxcb-render0.
Unpacking libxcb-render0 (from .../libxcb-render0_1.7-3_ia64.deb) ...
-Selecting previously deselected package libxcb-shm0.
+Selecting previously unselected package libxcb-shm0.
Unpacking libxcb-shm0 (from .../libxcb-shm0_1.7-3_ia64.deb) ...
-Selecting previously deselected package libxrender1.
+Selecting previously unselected package libxrender1.
Unpacking libxrender1 (from .../libxrender1_1%3a0.9.6-2_ia64.deb) ...
-Selecting previously deselected package libcairo2.
+Selecting previously unselected package libcairo2.
Unpacking libcairo2 (from .../libcairo2_1.10.2-6.1_ia64.deb) ...
-Selecting previously deselected package libpcre3.
-Unpacking libpcre3 (from .../libpcre3_8.12-3_ia64.deb) ...
-Selecting previously deselected package libglib2.0-0.
-Unpacking libglib2.0-0 (from .../libglib2.0-0_2.28.6-1_ia64.deb) ...
-Selecting previously deselected package libthai-data.
+Selecting previously unselected package libthai-data.
Unpacking libthai-data (from .../libthai-data_0.1.15-2_all.deb) ...
-Selecting previously deselected package libthai0.
+Selecting previously unselected package libthai0.
Unpacking libthai0 (from .../libthai0_0.1.15-2_ia64.deb) ...
-Selecting previously deselected package libxft2.
+Selecting previously unselected package libxft2.
Unpacking libxft2 (from .../libxft2_2.2.0-3_ia64.deb) ...
-Selecting previously deselected package fontconfig.
+Selecting previously unselected package fontconfig.
Unpacking fontconfig (from .../fontconfig_2.8.0-3_ia64.deb) ...
-Selecting previously deselected package libpango1.0-0.
-Unpacking libpango1.0-0 (from .../libpango1.0-0_1.28.4-2_ia64.deb) ...
-Selecting previously deselected package libsm6.
+Selecting previously unselected package libpango1.0-0.
+Unpacking libpango1.0-0 (from .../libpango1.0-0_1.29.4-2_ia64.deb) ...
+Selecting previously unselected package libpcrecpp0.
+Unpacking libpcrecpp0 (from .../libpcrecpp0_8.12-4_ia64.deb) ...
+Selecting previously unselected package libsm6.
Unpacking libsm6 (from .../libsm6_2%3a1.2.0-2_ia64.deb) ...
-Selecting previously deselected package libxext6.
+Selecting previously unselected package libjpeg8.
+Unpacking libjpeg8 (from .../libjpeg8_8c-2_ia64.deb) ...
+Selecting previously unselected package libtiff4.
+Unpacking libtiff4 (from .../libtiff4_3.9.5-2_ia64.deb) ...
+Selecting previously unselected package libunistring0.
+Unpacking libunistring0 (from .../libunistring0_0.9.3-5_ia64.deb) ...
+Selecting previously unselected package libxext6.
Unpacking libxext6 (from .../libxext6_2%3a1.3.0-3_ia64.deb) ...
-Selecting previously deselected package libxt6.
+Selecting previously unselected package libxss1.
+Unpacking libxss1 (from .../libxss1_1%3a1.2.1-2_ia64.deb) ...
+Selecting previously unselected package libxt6.
Unpacking libxt6 (from .../libxt6_1%3a1.1.1-2_ia64.deb) ...
-Selecting previously deselected package bsdmainutils.
+Selecting previously unselected package bsdmainutils.
Unpacking bsdmainutils (from .../bsdmainutils_8.2.3_ia64.deb) ...
-Selecting previously deselected package groff-base.
+Selecting previously unselected package groff-base.
Unpacking groff-base (from .../groff-base_1.21-6_ia64.deb) ...
-Selecting previously deselected package man-db.
+Selecting previously unselected package man-db.
Unpacking man-db (from .../man-db_2.6.0.2-2_ia64.deb) ...
-Selecting previously deselected package libmagic1.
-Unpacking libmagic1 (from .../libmagic1_5.04-5+b1_ia64.deb) ...
-Selecting previously deselected package file.
-Unpacking file (from .../file_5.04-5+b1_ia64.deb) ...
-Selecting previously deselected package gettext-base.
-Unpacking gettext-base (from .../gettext-base_0.18.1.1-3_ia64.deb) ...
-Selecting previously deselected package libxml2.
-Unpacking libxml2 (from .../libxml2_2.7.8.dfsg-4_ia64.deb) ...
-Selecting previously deselected package html2text.
+Selecting previously unselected package libmagic1.
+Unpacking libmagic1 (from .../libmagic1_5.09-2_ia64.deb) ...
+Selecting previously unselected package file.
+Unpacking file (from .../archives/file_5.09-2_ia64.deb) ...
+Selecting previously unselected package gettext-base.
+Unpacking gettext-base (from .../gettext-base_0.18.1.1-5_ia64.deb) ...
+Selecting previously unselected package cdbs.
+Unpacking cdbs (from .../archives/cdbs_0.4.99_all.deb) ...
+Selecting previously unselected package html2text.
Unpacking html2text (from .../html2text_1.3.2a-15_ia64.deb) ...
-Selecting previously deselected package libcroco3.
-Unpacking libcroco3 (from .../libcroco3_0.6.2-1_ia64.deb) ...
-Selecting previously deselected package libunistring0.
-Unpacking libunistring0 (from .../libunistring0_0.9.3-4_ia64.deb) ...
-Selecting previously deselected package gettext.
-Unpacking gettext (from .../gettext_0.18.1.1-3_ia64.deb) ...
-Selecting previously deselected package intltool-debian.
+Selecting previously unselected package gettext.
+Unpacking gettext (from .../gettext_0.18.1.1-5_ia64.deb) ...
+Selecting previously unselected package intltool-debian.
Unpacking intltool-debian (from .../intltool-debian_0.35.0+20060710.1_all.deb) ...
-Selecting previously deselected package po-debconf.
+Selecting previously unselected package po-debconf.
Unpacking po-debconf (from .../po-debconf_1.0.16+nmu1_all.deb) ...
-Selecting previously deselected package debhelper.
-Unpacking debhelper (from .../debhelper_8.9.3_all.deb) ...
-Selecting previously deselected package cdbs.
-Unpacking cdbs (from .../archives/cdbs_0.4.96_all.deb) ...
-Selecting previously deselected package dpatch.
-Unpacking dpatch (from .../archives/dpatch_2.0.31_all.deb) ...
-Selecting previously deselected package gfortran-4.6.
-Unpacking gfortran-4.6 (from .../gfortran-4.6_4.6.1-5_ia64.deb) ...
-Selecting previously deselected package gfortran.
-Unpacking gfortran (from .../gfortran_4%3a4.6.1-2_ia64.deb) ...
-Selecting previously deselected package libblas3gf.
-Unpacking libblas3gf (from .../libblas3gf_1.2-8_ia64.deb) ...
-Selecting previously deselected package libblas-dev.
-Unpacking libblas-dev (from .../libblas-dev_1.2-8_ia64.deb) ...
-Selecting previously deselected package libbz2-dev.
-Unpacking libbz2-dev (from .../libbz2-dev_1.0.5-6_ia64.deb) ...
-Selecting previously deselected package libjpeg62.
-Unpacking libjpeg62 (from .../libjpeg62_6b1-2_ia64.deb) ...
-Selecting previously deselected package libjpeg8.
-Unpacking libjpeg8 (from .../libjpeg8_8c-2_ia64.deb) ...
-Selecting previously deselected package libjpeg8-dev.
+Selecting previously unselected package debhelper.
+Unpacking debhelper (from .../debhelper_8.9.8_all.deb) ...
+Selecting previously unselected package dpatch.
+Unpacking dpatch (from .../archives/dpatch_2.0.33_all.deb) ...
+Selecting previously unselected package gfortran-4.6.
+Unpacking gfortran-4.6 (from .../gfortran-4.6_4.6.2-3_ia64.deb) ...
+Selecting previously unselected package gfortran.
+Unpacking gfortran (from .../gfortran_4%3a4.6.1-3_ia64.deb) ...
+Selecting previously unselected package libblas3gf.
+Unpacking libblas3gf (from .../libblas3gf_1.2.20110419-2_ia64.deb) ...
+Selecting previously unselected package libblas-dev.
+Unpacking libblas-dev (from .../libblas-dev_1.2.20110419-2_ia64.deb) ...
+Selecting previously unselected package libbz2-dev.
+Unpacking libbz2-dev (from .../libbz2-dev_1.0.5-7_ia64.deb) ...
+Selecting previously unselected package libjpeg8-dev.
Unpacking libjpeg8-dev (from .../libjpeg8-dev_8c-2_ia64.deb) ...
-Selecting previously deselected package liblapack3gf.
-Unpacking liblapack3gf (from .../liblapack3gf_3.2.1-8_ia64.deb) ...
-Selecting previously deselected package liblapack-dev.
-Unpacking liblapack-dev (from .../liblapack-dev_3.2.1-8_ia64.deb) ...
-Selecting previously deselected package libncurses5-dev.
-Unpacking libncurses5-dev (from .../libncurses5-dev_5.9-1_ia64.deb) ...
-Selecting previously deselected package libpaper1.
+Selecting previously unselected package liblapack3gf.
+Unpacking liblapack3gf (from .../liblapack3gf_3.3.1-1_ia64.deb) ...
+Selecting previously unselected package liblapack-dev.
+Unpacking liblapack-dev (from .../liblapack-dev_3.3.1-1_ia64.deb) ...
+Selecting previously unselected package libtinfo-dev.
+Unpacking libtinfo-dev (from .../libtinfo-dev_5.9-2_ia64.deb) ...
+Selecting previously unselected package libncurses5-dev.
+Unpacking libncurses5-dev (from .../libncurses5-dev_5.9-2_ia64.deb) ...
+Selecting previously unselected package libpaper1.
Unpacking libpaper1 (from .../libpaper1_1.1.24+nmu1_ia64.deb) ...
-Selecting previously deselected package libpaper-utils.
+Selecting previously unselected package libpaper-utils.
Unpacking libpaper-utils (from .../libpaper-utils_1.1.24+nmu1_ia64.deb) ...
-Selecting previously deselected package libpcrecpp0.
-Unpacking libpcrecpp0 (from .../libpcrecpp0_8.12-3_ia64.deb) ...
-Selecting previously deselected package libpcre3-dev.
-Unpacking libpcre3-dev (from .../libpcre3-dev_8.12-3_ia64.deb) ...
-Selecting previously deselected package zlib1g-dev.
+Selecting previously unselected package libpcre3-dev.
+Unpacking libpcre3-dev (from .../libpcre3-dev_8.12-4_ia64.deb) ...
+Selecting previously unselected package zlib1g-dev.
Unpacking zlib1g-dev (from .../zlib1g-dev_1%3a1.2.3.4.dfsg-3_ia64.deb) ...
-Selecting previously deselected package libpng12-dev.
+Selecting previously unselected package libpng12-dev.
Unpacking libpng12-dev (from .../libpng12-dev_1.2.46-3_ia64.deb) ...
-Selecting previously deselected package libreadline6-dev.
-Unpacking libreadline6-dev (from .../libreadline6-dev_6.2-2_ia64.deb) ...
-Selecting previously deselected package libreadline-dev.
-Unpacking libreadline-dev (from .../libreadline-dev_6.2-2_ia64.deb) ...
-Selecting previously deselected package libtiff4.
-Unpacking libtiff4 (from .../libtiff4_3.9.5-1_ia64.deb) ...
-Selecting previously deselected package libxss1.
-Unpacking libxss1 (from .../libxss1_1%3a1.2.1-1_ia64.deb) ...
-Selecting previously deselected package zip.
+Selecting previously unselected package libreadline6-dev.
+Unpacking libreadline6-dev (from .../libreadline6-dev_6.2-7_ia64.deb) ...
+Selecting previously unselected package libreadline-dev.
+Unpacking libreadline-dev (from .../libreadline-dev_6.2-7_ia64.deb) ...
+Selecting previously unselected package zip.
Unpacking zip (from .../archives/zip_3.0-4_ia64.deb) ...
-Selecting previously deselected package unzip.
+Selecting previously unselected package unzip.
Unpacking unzip (from .../archives/unzip_6.0-5_ia64.deb) ...
-Selecting previously deselected package xdg-utils.
+Selecting previously unselected package xdg-utils.
Unpacking xdg-utils (from .../xdg-utils_1.1.0~rc1-2_all.deb) ...
-Selecting previously deselected package tcl8.5.
+Selecting previously unselected package tcl8.5.
Unpacking tcl8.5 (from .../tcl8.5_8.5.10-1_ia64.deb) ...
-Selecting previously deselected package tk8.5.
+Selecting previously unselected package tk8.5.
Unpacking tk8.5 (from .../tk8.5_8.5.10-1_ia64.deb) ...
-Selecting previously deselected package r-base-core.
-Unpacking r-base-core (from .../r-base-core_2.13.1-1_ia64.deb) ...
-Selecting previously deselected package r-base-dev.
-Unpacking r-base-dev (from .../r-base-dev_2.13.1-1_all.deb) ...
-Setting up libgomp1 (4.6.1-5) ...
-Setting up cpp-4.6 (4.6.1-5) ...
-Setting up libquadmath0 (4.6.1-5) ...
-Setting up gcc-4.6 (4.6.1-5) ...
-Setting up libpipeline1 (1.2.0-3) ...
+Selecting previously unselected package r-base-core.
+Unpacking r-base-core (from .../r-base-core_2.14.0-1_ia64.deb) ...
+Selecting previously unselected package r-base-dev.
+Unpacking r-base-dev (from .../r-base-dev_2.14.0-1_all.deb) ...
+Setting up libgomp1 (4.6.2-3) ...
+Setting up libmpfr4 (3.1.0-2) ...
+Setting up cpp-4.6 (4.6.2-3) ...
+Setting up libquadmath0 (4.6.2-3) ...
+Setting up gcc-4.6 (4.6.2-3) ...
+Setting up libpipeline1 (1.2.0-4) ...
+Setting up liblzma5 (5.1.1alpha+20110809-3) ...
+Setting up libpcre3 (8.12-4) ...
+Setting up libglib2.0-0 (2.28.8-1) ...
+No schema files found: doing nothing.
+Setting up libxml2 (2.7.8.dfsg-5) ...
+Setting up libcroco3 (0.6.2-2) ...
Setting up libdatrie1 (0.2.4-3) ...
-Setting up libexpat1 (2.0.1-7) ...
-Setting up libfreetype6 (2.4.4-2) ...
+Setting up libexpat1 (2.0.1-7.1) ...
+Setting up libfreetype6 (2.4.7-2) ...
Setting up ucf (3.0025+nmu2) ...
-Setting up ttf-dejavu-core (2.33-1) ...
+Setting up ttf-dejavu-core (2.33-2) ...
Setting up fontconfig-config (2.8.0-3) ...
Setting up libfontconfig1 (2.8.0-3) ...
-Setting up libgfortran3 (4.6.1-5) ...
-Setting up x11-common (1:7.6+7) ...
+Setting up libgfortran3 (4.6.2-3) ...
+Setting up x11-common (1:7.6+9) ...
All runlevel operations denied by policy
invoke-rc.d: policy-rc.d denied execution of start.
Setting up libice6 (2:1.0.7-2) ...
-Setting up libpixman-1-0 (0.22.2-1) ...
+Setting up libpixman-1-0 (0.23.8-1) ...
Setting up libpng12-0 (1.2.46-3) ...
Setting up libxau6 (1:1.0.6-3) ...
Setting up libxdmcp6 (1:1.1.0-3) ...
Setting up libxcb1 (1.7-3) ...
-Setting up libx11-data (2:1.4.4-1) ...
-Setting up libx11-6 (2:1.4.4-1) ...
+Setting up libx11-data (2:1.4.4-2) ...
+Setting up libx11-6 (2:1.4.4-2) ...
Setting up libxcb-render0 (1.7-3) ...
Setting up libxcb-shm0 (1.7-3) ...
Setting up libxrender1 (1:0.9.6-2) ...
Setting up libcairo2 (1.10.2-6.1) ...
-Setting up libpcre3 (8.12-3) ...
-Setting up libglib2.0-0 (2.28.6-1) ...
-No schema files found: doing nothing.
Setting up libthai-data (0.1.15-2) ...
Setting up libthai0 (0.1.15-2) ...
Setting up libxft2 (2.2.0-3) ...
Setting up fontconfig (2.8.0-3) ...
Cleaning up old fontconfig caches... done.
Regenerating fonts cache... done.
-Setting up libpango1.0-0 (1.28.4-2) ...
+Setting up libpango1.0-0 (1.29.4-2) ...
+Setting up libpcrecpp0 (8.12-4) ...
Setting up libsm6 (2:1.2.0-2) ...
+Setting up libjpeg8 (8c-2) ...
+Setting up libtiff4 (3.9.5-2) ...
+Setting up libunistring0 (0.9.3-5) ...
Setting up libxext6 (2:1.3.0-3) ...
+Setting up libxss1 (1:1.2.1-2) ...
Setting up libxt6 (1:1.1.1-2) ...
Setting up bsdmainutils (8.2.3) ...
update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode.
@@ -515,47 +545,40 @@ update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in
Setting up groff-base (1.21-6) ...
Setting up man-db (2.6.0.2-2) ...
Building database of manual pages ...
-Setting up libmagic1 (5.04-5+b1) ...
-Setting up file (5.04-5+b1) ...
-Setting up gettext-base (0.18.1.1-3) ...
-Setting up libxml2 (2.7.8.dfsg-4) ...
+Setting up libmagic1 (5.09-2) ...
+Setting up file (5.09-2) ...
+Setting up gettext-base (0.18.1.1-5) ...
+Setting up cdbs (0.4.99) ...
Setting up html2text (1.3.2a-15) ...
-Setting up libcroco3 (0.6.2-1) ...
-Setting up libunistring0 (0.9.3-4) ...
-Setting up gettext (0.18.1.1-3) ...
+Setting up gettext (0.18.1.1-5) ...
Setting up intltool-debian (0.35.0+20060710.1) ...
Setting up po-debconf (1.0.16+nmu1) ...
-Setting up debhelper (8.9.3) ...
-Setting up cdbs (0.4.96) ...
-Setting up dpatch (2.0.31) ...
-Setting up gfortran-4.6 (4.6.1-5) ...
-Setting up gfortran (4:4.6.1-2) ...
+Setting up debhelper (8.9.8) ...
+Setting up dpatch (2.0.33) ...
+Setting up gfortran-4.6 (4.6.2-3) ...
+Setting up gfortran (4:4.6.1-3) ...
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode.
-Setting up libblas3gf (1.2-8) ...
+Setting up libblas3gf (1.2.20110419-2) ...
update-alternatives: using /usr/lib/libblas/libblas.so.3gf to provide /usr/lib/libblas.so.3gf (libblas.so.3gf) in auto mode.
-Setting up libblas-dev (1.2-8) ...
+Setting up libblas-dev (1.2.20110419-2) ...
update-alternatives: using /usr/lib/libblas/libblas.so to provide /usr/lib/libblas.so (libblas.so) in auto mode.
-Setting up libbz2-dev (1.0.5-6) ...
-Setting up libjpeg62 (6b1-2) ...
-Setting up libjpeg8 (8c-2) ...
+Setting up libbz2-dev (1.0.5-7) ...
Setting up libjpeg8-dev (8c-2) ...
-Setting up liblapack3gf (3.2.1-8) ...
+Setting up liblapack3gf (3.3.1-1) ...
update-alternatives: using /usr/lib/lapack/liblapack.so.3gf to provide /usr/lib/liblapack.so.3gf (liblapack.so.3gf) in auto mode.
-Setting up liblapack-dev (3.2.1-8) ...
+Setting up liblapack-dev (3.3.1-1) ...
update-alternatives: using /usr/lib/lapack/liblapack.so to provide /usr/lib/liblapack.so (liblapack.so) in auto mode.
-Setting up libncurses5-dev (5.9-1) ...
+Setting up libtinfo-dev (5.9-2) ...
+Setting up libncurses5-dev (5.9-2) ...
Setting up libpaper1 (1.1.24+nmu1) ...
Creating config file /etc/papersize with new version
Setting up libpaper-utils (1.1.24+nmu1) ...
-Setting up libpcrecpp0 (8.12-3) ...
-Setting up libpcre3-dev (8.12-3) ...
+Setting up libpcre3-dev (8.12-4) ...
Setting up zlib1g-dev (1:1.2.3.4.dfsg-3) ...
Setting up libpng12-dev (1.2.46-3) ...
-Setting up libreadline6-dev (6.2-2) ...
-Setting up libreadline-dev (6.2-2) ...
-Setting up libtiff4 (3.9.5-1) ...
-Setting up libxss1 (1:1.2.1-1) ...
+Setting up libreadline6-dev (6.2-7) ...
+Setting up libreadline-dev (6.2-7) ...
Setting up zip (3.0-4) ...
Setting up unzip (6.0-5) ...
Setting up xdg-utils (1.1.0~rc1-2) ...
@@ -563,22 +586,25 @@ Setting up tcl8.5 (8.5.10-1) ...
update-alternatives: using /usr/bin/tclsh8.5 to provide /usr/bin/tclsh (tclsh) in auto mode.
Setting up tk8.5 (8.5.10-1) ...
update-alternatives: using /usr/bin/wish8.5 to provide /usr/bin/wish (wish) in auto mode.
-Setting up r-base-core (2.13.1-1) ...
+Setting up r-base-core (2.14.0-1) ...
Setting R_PAPERSIZE_USER default to 'a4'
Creating config file /etc/R/Renviron with new version
-Setting up r-base-dev (2.13.1-1) ...
-Setting up libstdc++6-4.6-dev (4.6.1-5) ...
-Setting up g++-4.6 (4.6.1-5) ...
+Setting up r-base-dev (2.14.0-1) ...
+Setting up libstdc++6-4.6-dev (4.6.2-3) ...
+Setting up g++-4.6 (4.6.2-3) ...
Removing negative dependencies:
Reading package lists...
Building dependency tree...
Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 22 not upgraded.
+The following packages were automatically installed and are no longer required:
+ libppl9 libpwl5 libppl-c4 libcloog-ppl0 libgmpxx4ldbl
+Use 'apt-get autoremove' to remove them.
+0 upgraded, 0 newly installed, 0 to remove and 35 not upgraded.
Checking correctness of dependencies...
Kernel: Linux 2.6.32-5-mckinley ia64 (ia64)
-Toolchain package versions: binutils_2.21.53.20110720-1 dpkg-dev_1.16.0.3 g++-4.6_4.6.1-5 gcc-4.6_4.6.1-5 libc6.1-dev_2.13-10 libstdc++6_4.6.1-5 libstdc++6-4.6-dev_4.6.1-5 linux-libc-dev_2.6.39-3
-Package versions: apt_0.8.15.2 base-files_6.4 base-passwd_3.5.23 bash_4.1-3 binutils_2.21.53.20110720-1 bsdmainutils_8.2.3 bsdutils_1:2.19.1-4 build-essential_11.5 bzip2_1.0.5-6 cdbs_0.4.96 coreutils_8.5-1 cpp_4:4.6.1-2 cpp-4.6_4.6.1-5 dash_0.5.5.1-7.4 debconf_1.5.40 debfoster_2.7-1.1 debhelper_8.9.3 debian-archive-keyring_2010.08.28 debianutils_4.0.2 diffutils_1:3.0-1 dpatch_2.0.31 dpkg_1.16.0.3 dpkg-dev_1.16.0.3 e2fslibs_1.42~WIP-2011-07-02-1 e2fsprogs_1.42~WIP-2011-07-02-1 fakeroot_1.16-1 file_5.04-5+b1 findutils_4.4.2-1+b1 fontconfig_2.8.0-3 fontconfig-config_2.8.0-3 g++_4:4.6.1-2 g++-4.6_4.6.1-5 gcc_4:4.6.1-2 gcc-4.4-base_4.4.6-6 gcc-4.5-base_4.5.3-3 gcc-4.6_4.6.1-5 gcc-4.6-base_4.6.1-5 gettext_0.18.1.1-3 gettext-base_0.18.1.1-3 gfortran_4:4.6.1-2 gfortran-4.6_4.6.1-5 gnupg_1.4.11-3 gpgv_1.4.11-3 grep_2.9-1 groff-base_1.21-6 gzip_1.4-1 hostname_3.06 html2text_1.3.2a-15 initscripts_2.88dsf-13.11 insserv_1.14.0-2.1 intltool-debian_0.35.0+20060710.1 libacl1_2.2.51-3 libattr1_1:2.4.46-3 libblas-dev_1.2-8 libblas3gf_1.2-8 libblkid1_2.19.1-4 libbz2-1.0_1.0.5-6 libbz2-dev_1.0.5-6 libc-bin_2.13-10 libc-dev-bin_2.13-10 libc6.1_2.13-10 libc6.1-dev_2.13-10 libcairo2_1.10.2-6.1 libcloog-ppl0_0.15.9-3 libcomerr2_1.42~WIP-2011-07-02-1 libcroco3_0.6.2-1 libdatrie1_0.2.4-3 libdb5.1_5.1.25-11 libdpkg-perl_1.16.0.3 libexpat1_2.0.1-7 libfontconfig1_2.8.0-3 libfreetype6_2.4.4-2 libgc1c2_1:7.1-8 libgcc1_1:4.6.1-5 libgdbm3_1.8.3-10 libgfortran3_4.6.1-5 libglib2.0-0_2.28.6-1 libgmp10_2:5.0.1+dfsg-7 libgmpxx4ldbl_2:5.0.1+dfsg-7 libgomp1_4.6.1-5 libice6_2:1.0.7-2 libjpeg62_6b1-2 libjpeg8_8c-2 libjpeg8-dev_8c-2 liblapack-dev_3.2.1-8 liblapack3gf_3.2.1-8 liblzma2_5.0.0-2 libmagic1_5.04-5+b1 libmount1_2.19.1-4 libmpc2_0.9-3 libmpfr4_3.0.1-4 libncurses5_5.9-1 libncurses5-dev_5.9-1 libpam-modules_1.1.3-2 libpam-modules-bin_1.1.3-2 libpam-runtime_1.1.3-2 libpam0g_1.1.3-2 libpango1.0-0_1.28.4-2 libpaper-utils_1.1.24+nmu1 libpaper1_1.1.24+nmu1 libpcre3_8.12-3 libpcre3-dev_8.12-3 libpcrecpp0_8.12-3 libpipeline1_1.2.0-3 libpixman-1-0_0.22.2-1 libpng12-0_1.2.46-3 libpng12-dev_1.2.46-3 libppl-c4_0.11.2-4 libppl9_0.11.2-4 libpwl5_0.11.2-4 libquadmath0_4.6.1-5 libreadline-dev_6.2-2 libreadline6_6.2-2 libreadline6-dev_6.2-2 libselinux1_2.0.98-1.1 libsepol1_2.0.42-1 libslang2_2.2.4-2 libsm6_2:1.2.0-2 libss2_1.42~WIP-2011-07-02-1 libstdc++6_4.6.1-5 libstdc++6-4.6-dev_4.6.1-5 libthai-data_0.1.15-2 libthai0_0.1.15-2 libtiff4_3.9.5-1 libtimedate-perl_1.2000-1 libunistring0_0.9.3-4 libunwind7_0.99-0.3 libunwind7-dev_0.99-0.3 libusb-0.1-4_2:0.1.12-18 libuuid1_2.19.1-4 libx11-6_2:1.4.4-1 libx11-data_2:1.4.4-1 libxau6_1:1.0.6-3 libxcb-render0_1.7-3 libxcb-shm0_1.7-3 libxcb1_1.7-3 libxdmcp6_1:1.1.0-3 libxext6_2:1.3.0-3 libxft2_2.2.0-3 libxml2_2.7.8.dfsg-4 libxrender1_1:0.9.6-2 libxss1_1:1.2.1-1 libxt6_1:1.1.1-2 linux-libc-dev_2.6.39-3 login_1:4.1.4.2+svn3283-3 lsb-base_3.2-27 make_3.81-8.1 man-db_2.6.0.2-2 mawk_1.3.3-15 mount_2.19.1-4 multiarch-support_2.13-10 ncurses-base_5.9-1 ncurses-bin_5.9-1 passwd_1:4.1.4.2+svn3283-3 patch_2.6.1-2 perl_5.12.4-1 perl-base_5.12.4-1 perl-modules_5.12.4-1 po-debconf_1.0.16+nmu1 r-base-core_2.13.1-1 r-base-dev_2.13.1-1 readline-common_6.2-2 sed_4.2.1-9 sensible-utils_0.0.6 sudo_1.7.4p6-1 sysv-rc_2.88dsf-13.11 sysvinit_2.88dsf-13.11 sysvinit-utils_2.88dsf-13.11 tar_1.25-3 tcl8.5_8.5.10-1 tk8.5_8.5.10-1 ttf-dejavu-core_2.33-1 tzdata_2011h-3 ucf_3.0025+nmu2 unzip_6.0-5 util-linux_2.19.1-4 x11-common_1:7.6+7 xdg-utils_1.1.0~rc1-2 xz-utils_5.0.0-2 zip_3.0-4 zlib1g_1:1.2.3.4.dfsg-3 zlib1g-dev_1:1.2.3.4.dfsg-3
+Toolchain package versions: binutils_2.21.53.20110922-1 dpkg-dev_1.16.1 g++-4.6_4.6.2-3 gcc-4.6_4.6.2-3 libc6.1-dev_2.13-21 libstdc++6_4.6.2-3 libstdc++6-4.6-dev_4.6.2-3 linux-libc-dev_3.0.0-4
+Package versions: apt_0.8.15.8 base-files_6.5 base-passwd_3.5.23 bash_4.1-3 binutils_2.21.53.20110922-1 bsdmainutils_8.2.3 bsdutils_1:2.19.1-5 build-essential_11.5 bzip2_1.0.5-7 cdbs_0.4.99 coreutils_8.13-3 cpp_4:4.6.1-3 cpp-4.6_4.6.2-3 dash_0.5.7-2 debconf_1.5.41 debfoster_2.7-1.1 debhelper_8.9.8 debian-archive-keyring_2010.08.28 debianutils_4.0.3 diffutils_1:3.0-1 dpatch_2.0.33 dpkg_1.16.1 dpkg-dev_1.16.1 e2fslibs_1.42~WIP-2011-07-02-1 e2fsprogs_1.42~WIP-2011-07-02-1 fakeroot_1.18.1-1 file_5.09-2 findutils_4.4.2-1+b1 fontconfig_2.8.0-3 fontconfig-config_2.8.0-3 g++_4:4.6.1-3 g++-4.6_4.6.2-3 gcc_4:4.6.1-3 gcc-4.4-base_4.4.6-11 gcc-4.5-base_4.5.3-9 gcc-4.6_4.6.2-3 gcc-4.6-base_4.6.2-3 gettext_0.18.1.1-5 gettext-base_0.18.1.1-5 gfortran_4:4.6.1-3 gfortran-4.6_4.6.2-3 gnupg_1.4.11-3 gpgv_1.4.11-3 grep_2.9-2 groff-base_1.21-6 gzip_1.4-1 hostname_3.06 html2text_1.3.2a-15 initscripts_2.88dsf-13.11 insserv_1.14.0-2.1 intltool-debian_0.35.0+20060710.1 libacl1_2.2.51-3 libattr1_1:2.4.46-3 libblas-dev_1.2.20110419-2 libblas3gf_1.2.20110419-2 libblkid1_2.19.1-5 libbz2-1.0_1.0.5-7 libbz2-dev_1.0.5-7 libc-bin_2.13-21 libc-dev-bin_2.13-21 libc6.1_2.13-21 libc6.1-dev_2.13-21 libcairo2_1.10.2-6.1 libcloog-ppl0_0.15.9-3 libcomerr2_1.42~WIP-2011-07-02-1 libcroco3_0.6.2-2 libdatrie1_0.2.4-3 libdb5.1_5.1.25-11 libdpkg-perl_1.16.1 libexpat1_2.0.1-7.1 libfontconfig1_2.8.0-3 libfreetype6_2.4.7-2 libgc1c2_1:7.1-8 libgcc1_1:4.6.2-3 libgdbm3_1.8.3-10 libgfortran3_4.6.2-3 libglib2.0-0_2.28.8-1 libgmp10_2:5.0.2+dfsg-1 libgmpxx4ldbl_2:5.0.2+dfsg-1 libgomp1_4.6.2-3 libice6_2:1.0.7-2 libjpeg8_8c-2 libjpeg8-dev_8c-2 liblapack-dev_3.3.1-1 liblapack3gf_3.3.1-1 liblzma2_5.1.1alpha+20110809-2 liblzma5_5.1.1alpha+20110809-3 libmagic1_5.09-2 libmount1_2.19.1-5 libmpc2_0.9-3 libmpfr4_3.1.0-2 libncurses5_5.9-2 libncurses5-dev_5.9-2 libpam-modules_1.1.3-4 libpam-modules-bin_1.1.3-4 libpam-runtime_1.1.3-4 libpam0g_1.1.3-4 libpango1.0-0_1.29.4-2 libpaper-utils_1.1.24+nmu1 libpaper1_1.1.24+nmu1 libpcre3_8.12-4 libpcre3-dev_8.12-4 libpcrecpp0_8.12-4 libpipeline1_1.2.0-4 libpixman-1-0_0.23.8-1 libpng12-0_1.2.46-3 libpng12-dev_1.2.46-3 libppl-c4_0.11.2-4 libppl9_0.11.2-4 libpwl5_0.11.2-4 libquadmath0_4.6.2-3 libreadline-dev_6.2-7 libreadline6_6.2-7 libreadline6-dev_6.2-7 libselinux1_2.1.0-1 libsepol1_2.1.0-1.1 libslang2_2.2.4-3 libsm6_2:1.2.0-2 libss2_1.42~WIP-2011-07-02-1 libstdc++6_4.6.2-3 libstdc++6-4.6-dev_4.6.2-3 libthai-data_0.1.15-2 libthai0_0.1.15-2 libtiff4_3.9.5-2 libtimedate-perl_1.2000-1 libtinfo-dev_5.9-2 libtinfo5_5.9-2 libunistring0_0.9.3-5 libunwind7_0.99-0.3 libunwind7-dev_0.99-0.3 libusb-0.1-4_2:0.1.12-19 libuuid1_2.19.1-5 libx11-6_2:1.4.4-2 libx11-data_2:1.4.4-2 libxau6_1:1.0.6-3 libxcb-render0_1.7-3 libxcb-shm0_1.7-3 libxcb1_1.7-3 libxdmcp6_1:1.1.0-3 libxext6_2:1.3.0-3 libxft2_2.2.0-3 libxml2_2.7.8.dfsg-5 libxrender1_1:0.9.6-2 libxss1_1:1.2.1-2 libxt6_1:1.1.1-2 linux-libc-dev_3.0.0-4 login_1:4.1.4.2+svn3283-3 lsb-base_3.2-28 make_3.81-8.1 man-db_2.6.0.2-2 mawk_1.3.3-15 mount_2.19.1-5 multiarch-support_2.13-21 ncurses-base_5.9-2 ncurses-bin_5.9-2 passwd_1:4.1.4.2+svn3283-3 patch_2.6.1-2 perl_5.12.4-4 perl-base_5.12.4-4 perl-modules_5.12.4-4 po-debconf_1.0.16+nmu1 r-base-core_2.14.0-1 r-base-dev_2.14.0-1 readline-common_6.2-5 sed_4.2.1-9 sensible-utils_0.0.6 sudo_1.8.2-2 sysv-rc_2.88dsf-13.11 sysvinit_2.88dsf-13.11 sysvinit-utils_2.88dsf-13.11 tar_1.26-2 tcl8.5_8.5.10-1 tk8.5_8.5.10-1 ttf-dejavu-core_2.33-2 tzdata_2011k-1 ucf_3.0025+nmu2 unzip_6.0-5 util-linux_2.19.1-5 x11-common_1:7.6+9 xdg-utils_1.1.0~rc1-2 xz-utils_5.1.1alpha+20110809-2 zip_3.0-4 zlib1g_1:1.2.3.4.dfsg-3 zlib1g-dev_1:1.2.3.4.dfsg-3
┌──────────────────────────────────────────────────────────────────────────────┐
│ Build │
@@ -589,12 +615,12 @@ Unpack source
─────────────
gpgv: keyblock resource `/home/buildd/.gnupg/trustedkeys.gpg': file open error
-gpgv: Signature made Thu Aug 4 00:12:34 2011 UTC using RSA key ID 2295D502
+gpgv: Signature made Wed Nov 2 05:31:37 2011 UTC using RSA key ID 2295D502
gpgv: Can't check signature: public key not found
-dpkg-source: warning: failed to verify signature on ./r-bioc-biobase_2.12.2-1.dsc
-dpkg-source: info: extracting r-bioc-biobase in r-bioc-biobase-2.12.2
-dpkg-source: info: unpacking r-bioc-biobase_2.12.2.orig.tar.gz
-dpkg-source: info: applying r-bioc-biobase_2.12.2-1.diff.gz
+dpkg-source: warning: failed to verify signature on ./r-bioc-biobase_2.14.0-1.dsc
+dpkg-source: info: extracting r-bioc-biobase in r-bioc-biobase-2.14.0
+dpkg-source: info: unpacking r-bioc-biobase_2.14.0.orig.tar.gz
+dpkg-source: info: applying r-bioc-biobase_2.14.0-1.diff.gz
Check disc space
────────────────
@@ -603,14 +629,14 @@ Check disc space
dpkg-buildpackage
─────────────────
-dpkg-buildpackage: export CFLAGS from dpkg-buildflags (origin: vendor): -g -O2
-dpkg-buildpackage: export CPPFLAGS from dpkg-buildflags (origin: vendor):
-dpkg-buildpackage: export CXXFLAGS from dpkg-buildflags (origin: vendor): -g -O2
-dpkg-buildpackage: export FFLAGS from dpkg-buildflags (origin: vendor): -g -O2
-dpkg-buildpackage: export LDFLAGS from dpkg-buildflags (origin: vendor):
+dpkg-buildpackage: dpkg-buildflags (origin: vendor): CFLAGS = -g -O2 -D_FORTIFY_SOURCE=2 -Wformat -Wformat-security -Werror=format-security
+dpkg-buildpackage: dpkg-buildflags (origin: vendor): CPPFLAGS =
+dpkg-buildpackage: dpkg-buildflags (origin: vendor): CXXFLAGS = -g -O2 -D_FORTIFY_SOURCE=2 -Wformat -Wformat-security -Werror=format-security
+dpkg-buildpackage: dpkg-buildflags (origin: vendor): FFLAGS = -g -O2
+dpkg-buildpackage: dpkg-buildflags (origin: vendor): LDFLAGS =
dpkg-buildpackage: source package r-bioc-biobase
-dpkg-buildpackage: source version 2.12.2-1
- dpkg-source --before-build r-bioc-biobase-2.12.2
+dpkg-buildpackage: source version 2.14.0-1
+ dpkg-source --before-build r-bioc-biobase-2.14.0
dpkg-buildpackage: host architecture ia64
fakeroot debian/rules clean
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
@@ -618,9 +644,9 @@ test -x debian/rules
dh_testroot
/usr/bin/make -f debian/rules reverse-config
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
-make[1]: Entering directory `/build/buildd-r-bioc-biobase_2.12.2-1-ia64-3cP5pE/r-bioc-biobase-2.12.2'
+make[1]: Entering directory `/build/buildd-r-bioc-biobase_2.14.0-1-ia64-lxygRA/r-bioc-biobase-2.14.0'
make[1]: Nothing to be done for `reverse-config'.
-make[1]: Leaving directory `/build/buildd-r-bioc-biobase_2.12.2-1-ia64-3cP5pE/r-bioc-biobase-2.12.2'
+make[1]: Leaving directory `/build/buildd-r-bioc-biobase_2.14.0-1-ia64-lxygRA/r-bioc-biobase-2.14.0'
if [ "reverse-patches" = "reverse-patches" ]; then rm -f debian/stamp-patched; fi
patches:
if [ "reverse-patches" != "reverse-patches" ]; then touch debian/stamp-patched; fi
@@ -640,51 +666,53 @@ rm -f config.log config.status
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
test -x debian/rules
mkdir -p "."
+/usr/share/cdbs/1/rules/buildcore.mk:109: WARNING: DEB_DH_BUILDDEB_ARGS is a deprecated variable
/usr/bin/make -f debian/rules reverse-config
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
-make[1]: Entering directory `/build/buildd-r-bioc-biobase_2.12.2-1-ia64-3cP5pE/r-bioc-biobase-2.12.2'
+make[1]: Entering directory `/build/buildd-r-bioc-biobase_2.14.0-1-ia64-lxygRA/r-bioc-biobase-2.14.0'
make[1]: Nothing to be done for `reverse-config'.
-make[1]: Leaving directory `/build/buildd-r-bioc-biobase_2.12.2-1-ia64-3cP5pE/r-bioc-biobase-2.12.2'
+make[1]: Leaving directory `/build/buildd-r-bioc-biobase_2.14.0-1-ia64-lxygRA/r-bioc-biobase-2.14.0'
if [ "debian/stamp-patched" = "reverse-patches" ]; then rm -f debian/stamp-patched; fi
patches:
if [ "debian/stamp-patched" != "reverse-patches" ]; then touch debian/stamp-patched; fi
if [ "debian/stamp-patched" != "reverse-patches" ] ; then \
/usr/bin/make -f debian/rules update-config ; \
fi
-make[1]: Entering directory `/build/buildd-r-bioc-biobase_2.12.2-1-ia64-3cP5pE/r-bioc-biobase-2.12.2'
+make[1]: Entering directory `/build/buildd-r-bioc-biobase_2.14.0-1-ia64-lxygRA/r-bioc-biobase-2.14.0'
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
make[1]: Nothing to be done for `update-config'.
+make[1]: Leaving directory `/build/buildd-r-bioc-biobase_2.14.0-1-ia64-lxygRA/r-bioc-biobase-2.14.0'
fakeroot debian/rules binary-arch
-make[1]: Leaving directory `/build/buildd-r-bioc-biobase_2.12.2-1-ia64-3cP5pE/r-bioc-biobase-2.12.2'
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
test -x debian/rules
dh_testroot
dh_prep
dh_installdirs -A
mkdir -p "."
+/usr/share/cdbs/1/rules/buildcore.mk:109: WARNING: DEB_DH_BUILDDEB_ARGS is a deprecated variable
dh_installdirs usr/lib/R/site-library
if test -f /usr/bin/xvfb-run; then \
xvfb-run -a \
- R CMD INSTALL -l /build/buildd-r-bioc-biobase_2.12.2-1-ia64-3cP5pE/r-bioc-biobase-2.12.2/debian/r-bioc-biobase/usr/lib/R/site-library --clean \
+ R CMD INSTALL -l /build/buildd-r-bioc-biobase_2.14.0-1-ia64-lxygRA/r-bioc-biobase-2.14.0/debian/r-bioc-biobase/usr/lib/R/site-library --clean \
. ; \
else \
- R CMD INSTALL -l /build/buildd-r-bioc-biobase_2.12.2-1-ia64-3cP5pE/r-bioc-biobase-2.12.2/debian/r-bioc-biobase/usr/lib/R/site-library \
+ R CMD INSTALL -l /build/buildd-r-bioc-biobase_2.14.0-1-ia64-lxygRA/r-bioc-biobase-2.14.0/debian/r-bioc-biobase/usr/lib/R/site-library \
--clean . ;\
fi
* installing *source* package 'Biobase' ...
** libs
-make[1]: Entering directory `/build/buildd-r-bioc-biobase_2.12.2-1-ia64-3cP5pE/r-bioc-biobase-2.12.2/src'
-gcc -I/usr/share/R/include -fpic -std=gnu99 -O3 -pipe -g -c Rinit.c -o Rinit.o
-gcc -I/usr/share/R/include -fpic -std=gnu99 -O3 -pipe -g -c anyMissing.c -o anyMissing.o
-gcc -I/usr/share/R/include -fpic -std=gnu99 -O3 -pipe -g -c envir.c -o envir.o
-gcc -I/usr/share/R/include -fpic -std=gnu99 -O3 -pipe -g -c matchpt.c -o matchpt.o
-gcc -I/usr/share/R/include -fpic -std=gnu99 -O3 -pipe -g -c rowMedians.c -o rowMedians.o
-gcc -I/usr/share/R/include -fpic -std=gnu99 -O3 -pipe -g -c sublist_extract.c -o sublist_extract.o
-gcc -shared -o Biobase.so Rinit.o anyMissing.o envir.o matchpt.o rowMedians.o sublist_extract.o -L/usr/lib/R/lib -lR
-make[1]: Leaving directory `/build/buildd-r-bioc-biobase_2.12.2-1-ia64-3cP5pE/r-bioc-biobase-2.12.2/src'
-make[1]: Entering directory `/build/buildd-r-bioc-biobase_2.12.2-1-ia64-3cP5pE/r-bioc-biobase-2.12.2/src'
-make[1]: Leaving directory `/build/buildd-r-bioc-biobase_2.12.2-1-ia64-3cP5pE/r-bioc-biobase-2.12.2/src'
-installing to /build/buildd-r-bioc-biobase_2.12.2-1-ia64-3cP5pE/r-bioc-biobase-2.12.2/debian/r-bioc-biobase/usr/lib/R/site-library/Biobase/libs
+make[1]: Entering directory `/build/buildd-r-bioc-biobase_2.14.0-1-ia64-lxygRA/r-bioc-biobase-2.14.0/src'
+gcc -std=gnu99 -I/usr/share/R/include -fpic -O3 -pipe -g -c Rinit.c -o Rinit.o
+gcc -std=gnu99 -I/usr/share/R/include -fpic -O3 -pipe -g -c anyMissing.c -o anyMissing.o
+gcc -std=gnu99 -I/usr/share/R/include -fpic -O3 -pipe -g -c envir.c -o envir.o
+gcc -std=gnu99 -I/usr/share/R/include -fpic -O3 -pipe -g -c matchpt.c -o matchpt.o
+gcc -std=gnu99 -I/usr/share/R/include -fpic -O3 -pipe -g -c rowMedians.c -o rowMedians.o
+gcc -std=gnu99 -I/usr/share/R/include -fpic -O3 -pipe -g -c sublist_extract.c -o sublist_extract.o
+gcc -std=gnu99 -shared -o Biobase.so Rinit.o anyMissing.o envir.o matchpt.o rowMedians.o sublist_extract.o -L/usr/lib/R/lib -lR
+make[1]: Leaving directory `/build/buildd-r-bioc-biobase_2.14.0-1-ia64-lxygRA/r-bioc-biobase-2.14.0/src'
+make[1]: Entering directory `/build/buildd-r-bioc-biobase_2.14.0-1-ia64-lxygRA/r-bioc-biobase-2.14.0/src'
+make[1]: Leaving directory `/build/buildd-r-bioc-biobase_2.14.0-1-ia64-lxygRA/r-bioc-biobase-2.14.0/src'
+installing to /build/buildd-r-bioc-biobase_2.14.0-1-ia64-lxygRA/r-bioc-biobase-2.14.0/debian/r-bioc-biobase/usr/lib/R/site-library/Biobase/libs
** R
** data
** inst
@@ -692,20 +720,27 @@ installing to /build/buildd-r-bioc-biobase_2.12.2-1-ia64-3cP5pE/r-bioc-biobase-2
** help
*** installing help indices
** building package indices ...
+*** tangling vignette sources ...
+ 'BiobaseDevelopment.Rnw'
+ 'Bioconductor.Rnw'
+ 'ExpressionSetIntroduction.Rnw'
+ 'HowTo.Rnw'
+ 'Qviews.Rnw'
+ 'esApply.Rnw'
** testing if installed package can be loaded
* DONE (Biobase)
-rm -vf /build/buildd-r-bioc-biobase_2.12.2-1-ia64-3cP5pE/r-bioc-biobase-2.12.2/debian/r-bioc-biobase/usr/lib/R/site-library/R.css \
- /build/buildd-r-bioc-biobase_2.12.2-1-ia64-3cP5pE/r-bioc-biobase-2.12.2/debian/r-bioc-biobase/usr/lib/R/site-library/Biobase/COPYING \
- /build/buildd-r-bioc-biobase_2.12.2-1-ia64-3cP5pE/r-bioc-biobase-2.12.2/debian/r-bioc-biobase/usr/lib/R/site-library/Biobase/LICENSE.txt
+rm -vf /build/buildd-r-bioc-biobase_2.14.0-1-ia64-lxygRA/r-bioc-biobase-2.14.0/debian/r-bioc-biobase/usr/lib/R/site-library/R.css \
+ /build/buildd-r-bioc-biobase_2.14.0-1-ia64-lxygRA/r-bioc-biobase-2.14.0/debian/r-bioc-biobase/usr/lib/R/site-library/Biobase/COPYING \
+ /build/buildd-r-bioc-biobase_2.14.0-1-ia64-lxygRA/r-bioc-biobase-2.14.0/debian/r-bioc-biobase/usr/lib/R/site-library/Biobase/LICENSE.txt
if test -f debian/overrides; then \
- install -d /build/buildd-r-bioc-biobase_2.12.2-1-ia64-3cP5pE/r-bioc-biobase-2.12.2/debian/r-bioc-biobase/usr/share/lintian/overrides ; \
+ install -d /build/buildd-r-bioc-biobase_2.14.0-1-ia64-lxygRA/r-bioc-biobase-2.14.0/debian/r-bioc-biobase/usr/share/lintian/overrides ; \
install -m 0644 debian/overrides \
- /build/buildd-r-bioc-biobase_2.12.2-1-ia64-3cP5pE/r-bioc-biobase-2.12.2/debian/r-bioc-biobase/usr/share/lintian/overrides/r-bioc-biobase; \
+ /build/buildd-r-bioc-biobase_2.14.0-1-ia64-lxygRA/r-bioc-biobase-2.14.0/debian/r-bioc-biobase/usr/share/lintian/overrides/r-bioc-biobase; \
fi
Adding cdbs dependencies to debian/r-bioc-biobase.substvars
dh_installdirs -pr-bioc-biobase
-echo "R:Depends=r-base-core (>= 2.13.1~)" >> debian/r-bioc-biobase.substvars
+echo "R:Depends=r-base-core (>= 2.14.0~)" >> debian/r-bioc-biobase.substvars
dh_installdocs -pr-bioc-biobase ./NEWS
dh_installexamples -pr-bioc-biobase
dh_installman -pr-bioc-biobase
@@ -736,58 +771,62 @@ dh_perl -pr-bioc-biobase
dh_shlibdeps -pr-bioc-biobase
dh_gencontrol -pr-bioc-biobase
dh_md5sums -pr-bioc-biobase
-dh_builddeb -pr-bioc-biobase
-dpkg-deb: building package `r-bioc-biobase' in `../r-bioc-biobase_2.12.2-1_ia64.deb'.
- dpkg-genchanges -B -mia64 Build Daemon (alkman) <buildd_ia64-alkman at buildd.debian.org> >../r-bioc-biobase_2.12.2-1_ia64.changes
+dh_builddeb -pr-bioc-biobase -- -Z xz
+dpkg-deb: building package `r-bioc-biobase' in `../r-bioc-biobase_2.14.0-1_ia64.deb'.
+ dpkg-genchanges -B -mia64 Build Daemon (mundy) <buildd_ia64-mundy at buildd.debian.org> >../r-bioc-biobase_2.14.0-1_ia64.changes
dpkg-genchanges: arch-specific upload - not including arch-independent packages
dpkg-genchanges: binary-only upload - not including any source code
- dpkg-source --after-build r-bioc-biobase-2.12.2
+ dpkg-source --after-build r-bioc-biobase-2.14.0
dpkg-buildpackage: binary only upload (no source included)
────────────────────────────────────────────────────────────────────────────────
-Build finished at 20110804-0030
+Build finished at 20111102-0939
-r-bioc-biobase_2.12.2-1_ia64.changes:
+r-bioc-biobase_2.14.0-1_ia64.changes:
Format: 1.8
-Date: Thu, 04 Aug 2011 08:58:03 +0900
+Date: Wed, 02 Nov 2011 13:52:04 +0900
Source: r-bioc-biobase
Binary: r-bioc-biobase
Architecture: ia64
-Version: 2.12.2-1
+Version: 2.14.0-1
Distribution: sid
Urgency: low
-Maintainer: ia64 Build Daemon (alkman) <buildd_ia64-alkman at buildd.debian.org>
+Maintainer: ia64 Build Daemon (mundy) <buildd_ia64-mundy at buildd.debian.org>
Changed-By: Charles Plessy <plessy at debian.org>
Description:
r-bioc-biobase - base functions for Bioconductor
Changes:
- r-bioc-biobase (2.12.2-1) unstable; urgency=low
+ r-bioc-biobase (2.14.0-1) unstable; urgency=low
.
- * New upstream release.
+ [cb6b786] Bioconductor release 2.9.
+ [d70e490] Build-Depend on R >= 2.10 according to DESCRIPTION.
+ [ae99e35] Include 7 digits of the commit id in the changelog entry.
+ [33b5d47] Compress binary package with xz.
Checksums-Sha1:
- c01b37ca8b390f072d1655fc2e704de6aaffd0bb 2673042 r-bioc-biobase_2.12.2-1_ia64.deb
+ 3b164f9a07d5105268e7fcab1579420c79102901 2318556 r-bioc-biobase_2.14.0-1_ia64.deb
Checksums-Sha256:
- 275d3c5f54965c68198fe13bf3412f76c2a1c29655f3ce9111686009c721afad 2673042 r-bioc-biobase_2.12.2-1_ia64.deb
+ db15a0ac35a588f6b466bac774f9ecf0da28c3438dc9feb62b67fb921b552f87 2318556 r-bioc-biobase_2.14.0-1_ia64.deb
Files:
- 50b1812b8782aceab34f7352358bf1aa 2673042 gnu-r optional r-bioc-biobase_2.12.2-1_ia64.deb
+ 583c75d15024296b9466d226cee4be6d 2318556 gnu-r optional r-bioc-biobase_2.14.0-1_ia64.deb
┌──────────────────────────────────────────────────────────────────────────────┐
│ Package contents │
└──────────────────────────────────────────────────────────────────────────────┘
-r-bioc-biobase_2.12.2-1_ia64.deb
+r-bioc-biobase_2.14.0-1_ia64.deb
────────────────────────────────
new debian package, version 2.0.
- size 2673042 bytes: control archive= 4939 bytes.
- 1188 bytes, 25 lines control
+ size 2318556 bytes: control archive= 4951 bytes.
+ 1218 bytes, 26 lines control
13314 bytes, 141 lines md5sums
Package: r-bioc-biobase
- Version: 2.12.2-1
+ Version: 2.14.0-1
Architecture: ia64
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
- Installed-Size: 5136
- Depends: libc6.1 (>= 2.3), r-base-core (>= 2.13.1~)
+ Installed-Size: 3086
+ Pre-Depends: dpkg (>= 1.15.6)
+ Depends: libc6.1 (>= 2.3), r-base-core (>= 2.14.0~)
Section: gnu-r
Priority: optional
Homepage: http://www.bioconductor.org
@@ -808,177 +847,177 @@ r-bioc-biobase_2.12.2-1_ia64.deb
unofficial auto-generated Bioconductor packages for Debian and Ubuntu systems,
that are prepared by members of the Debian Med team.
-drwxr-xr-x root/root 0 2011-08-04 00:30 ./
-drwxr-xr-x root/root 0 2011-08-04 00:30 ./usr/
-drwxr-xr-x root/root 0 2011-08-04 00:30 ./usr/share/
-drwxr-xr-x root/root 0 2011-08-04 00:30 ./usr/share/doc/
-drwxr-xr-x root/root 0 2011-08-04 00:30 ./usr/share/doc/r-bioc-biobase/
--rw-r--r-- root/root 1380 2011-07-01 16:14 ./usr/share/doc/r-bioc-biobase/NEWS.gz
--rw-r--r-- root/root 203 2011-08-04 00:29 ./usr/share/doc/r-bioc-biobase/changelog.Debian.gz
--rw-r--r-- root/root 10574 2011-08-04 00:29 ./usr/share/doc/r-bioc-biobase/copyright
--rw-r--r-- root/root 392 2011-08-04 00:29 ./usr/share/doc/r-bioc-biobase/README.Debian
-drwxr-xr-x root/root 0 2011-08-04 00:29 ./usr/lib/
-drwxr-xr-x root/root 0 2011-08-04 00:29 ./usr/lib/R/
-drwxr-xr-x root/root 0 2011-08-04 00:30 ./usr/lib/R/site-library/
-drwxr-xr-x root/root 0 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/
--rw-r--r-- root/root 6600 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/INDEX
-drwxr-xr-x root/root 0 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/html/
--rw-r--r-- root/root 1179 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/html/R.css
--rw-r--r-- root/root 51239 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/html/00Index.html
-drwxr-xr-x root/root 0 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/help/
--rw-r--r-- root/root 3321 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/help/aliases.rds
--rw-r--r-- root/root 14396 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/help/AnIndex
--rw-r--r-- root/root 1987 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/help/Biobase.rdx
--rw-r--r-- root/root 242133 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/help/Biobase.rdb
--rw-r--r-- root/root 858 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/help/paths.rds
--rw-r--r-- root/root 516 2011-08-04 00:29 ./usr/lib/R/site-library/Biobase/testClass.R
--rw-r--r-- root/root 650 2011-08-04 00:29 ./usr/lib/R/site-library/Biobase/CITATION
-drwxr-xr-x root/root 0 2011-08-04 00:29 ./usr/lib/R/site-library/Biobase/scripts/
--rw-r--r-- root/root 6808 2011-08-04 00:29 ./usr/lib/R/site-library/Biobase/scripts/query.packages.R
--rw-r--r-- root/root 2008 2011-08-04 00:29 ./usr/lib/R/site-library/Biobase/scripts/makeExpressionSetPackage.R
--rw-r--r-- root/root 1122 2011-08-04 00:29 ./usr/lib/R/site-library/Biobase/scripts/getBioCPkgNames.R
--rw-r--r-- root/root 1213 2011-08-04 00:29 ./usr/lib/R/site-library/Biobase/scripts/getBioCHelp
--rw-r--r-- root/root 5365 2011-08-04 00:29 ./usr/lib/R/site-library/Biobase/scripts/getBioC.R
--rw-r--r-- root/root 774 2011-08-04 00:29 ./usr/lib/R/site-library/Biobase/scripts/esetTesting.R
-drwxr-xr-x root/root 0 2011-08-04 00:29 ./usr/lib/R/site-library/Biobase/extdata/
--rw-r--r-- root/root 715 2011-08-04 00:29 ./usr/lib/R/site-library/Biobase/extdata/pData.txt
--rw-r--r-- root/root 109039 2011-08-04 00:29 ./usr/lib/R/site-library/Biobase/extdata/exprsData.txt
-drwxr-xr-x root/root 0 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/doc/
--rw-r--r-- root/root 1426 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/doc/index.html
--rw-r--r-- root/root 1591 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/doc/esApply.R
--rw-r--r-- root/root 3987 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/doc/Qviews.R
--rw-r--r-- root/root 206 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/doc/HowTo.R
--rw-r--r-- root/root 6656 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/doc/ExpressionSetIntroduction.R
--rw-r--r-- root/root 220 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/doc/Bioconductor.R
--rw-r--r-- root/root 8004 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/doc/BiobaseDevelopment.R
--rw-r--r-- root/root 110288 2011-08-04 00:29 ./usr/lib/R/site-library/Biobase/doc/esApply.pdf
--rw-r--r-- root/root 3727 2011-08-04 00:29 ./usr/lib/R/site-library/Biobase/doc/esApply.Rnw
--rw-r--r-- root/root 79071 2011-08-04 00:29 ./usr/lib/R/site-library/Biobase/doc/Qviews.pdf
--rw-r--r-- root/root 5030 2011-08-04 00:29 ./usr/lib/R/site-library/Biobase/doc/Qviews.Rnw
--rw-r--r-- root/root 60322 2011-08-04 00:29 ./usr/lib/R/site-library/Biobase/doc/HowTo.pdf
--rw-r--r-- root/root 3048 2011-08-04 00:29 ./usr/lib/R/site-library/Biobase/doc/HowTo.Rnw
--rw-r--r-- root/root 197875 2011-08-04 00:29 ./usr/lib/R/site-library/Biobase/doc/ExpressionSetIntroduction.pdf
--rw-r--r-- root/root 18067 2011-08-04 00:29 ./usr/lib/R/site-library/Biobase/doc/ExpressionSetIntroduction.Rnw
--rw-r--r-- root/root 76653 2011-08-04 00:29 ./usr/lib/R/site-library/Biobase/doc/Bioconductor.pdf
--rw-r--r-- root/root 3067 2011-08-04 00:29 ./usr/lib/R/site-library/Biobase/doc/Bioconductor.Rnw
--rw-r--r-- root/root 267601 2011-08-04 00:29 ./usr/lib/R/site-library/Biobase/doc/BiobaseDevelopment.pdf
--rw-r--r-- root/root 28377 2011-08-04 00:29 ./usr/lib/R/site-library/Biobase/doc/BiobaseDevelopment.Rnw
-drwxr-xr-x root/root 0 2011-08-04 00:29 ./usr/lib/R/site-library/Biobase/doc/legacy/
--rw-r--r-- root/root 13630 2011-08-04 00:29 ./usr/lib/R/site-library/Biobase/doc/legacy/Biobase.Rnw
-drwxr-xr-x root/root 0 2011-08-04 00:29 ./usr/lib/R/site-library/Biobase/UnitTests/
--rw-r--r-- root/root 1257 2011-08-04 00:29 ./usr/lib/R/site-library/Biobase/UnitTests/utilities.R
--rw-r--r-- root/root 2040 2011-08-04 00:29 ./usr/lib/R/site-library/Biobase/UnitTests/unsaveSetSlot_test.R
--rw-r--r-- root/root 1907 2011-08-04 00:29 ./usr/lib/R/site-library/Biobase/UnitTests/subListExtract_test.R
--rwxr-xr-x root/root 213 2011-08-04 00:29 ./usr/lib/R/site-library/Biobase/UnitTests/runfile.sh
--rw-r--r-- root/root 477 2011-08-04 00:29 ./usr/lib/R/site-library/Biobase/UnitTests/runalltests.R
--rwxr-xr-x root/root 39 2011-08-04 00:29 ./usr/lib/R/site-library/Biobase/UnitTests/runall.sh
--rw-r--r-- root/root 1515 2011-08-04 00:29 ./usr/lib/R/site-library/Biobase/UnitTests/matrix_test.R
--rw-r--r-- root/root 2096 2011-08-04 00:29 ./usr/lib/R/site-library/Biobase/UnitTests/esApply_test.R
--rw-r--r-- root/root 4598 2011-08-04 00:29 ./usr/lib/R/site-library/Biobase/UnitTests/data.frame_test.R
--rw-r--r-- root/root 403 2011-08-04 00:29 ./usr/lib/R/site-library/Biobase/UnitTests/copyEnv_test.R
--rw-r--r-- root/root 2522 2011-08-04 00:29 ./usr/lib/R/site-library/Biobase/UnitTests/combine_test.R
--rw-r--r-- root/root 180 2011-08-04 00:29 ./usr/lib/R/site-library/Biobase/UnitTests/checkClass_test.R
--rw-r--r-- root/root 951 2011-08-04 00:29 ./usr/lib/R/site-library/Biobase/UnitTests/cache_test.R
--rw-r--r-- root/root 5015 2011-08-04 00:29 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_test.R
--rw-r--r-- root/root 8167 2011-08-04 00:29 ./usr/lib/R/site-library/Biobase/UnitTests/UpdateObject_test.R
--rw-r--r-- root/root 580 2011-08-04 00:29 ./usr/lib/R/site-library/Biobase/UnitTests/SnpSet_test.R
--rw-r--r-- root/root 8317 2011-08-04 00:29 ./usr/lib/R/site-library/Biobase/UnitTests/NChannelSet_test.R
--rw-r--r-- root/root 286 2011-08-04 00:29 ./usr/lib/R/site-library/Biobase/UnitTests/Makefile
--rw-r--r-- root/root 6194 2011-08-04 00:29 ./usr/lib/R/site-library/Biobase/UnitTests/ExpressionSet_test.R
--rw-r--r-- root/root 20153 2011-08-04 00:29 ./usr/lib/R/site-library/Biobase/UnitTests/EsetSubclasses_test.R
--rw-r--r-- root/root 629 2011-08-04 00:29 ./usr/lib/R/site-library/Biobase/UnitTests/DataClasses_test.R
--rw-r--r-- root/root 2035 2011-08-04 00:29 ./usr/lib/R/site-library/Biobase/UnitTests/AssayData_test.R
--rw-r--r-- root/root 10497 2011-08-04 00:29 ./usr/lib/R/site-library/Biobase/UnitTests/AnnotatedDataFrame_test.R
-drwxr-xr-x root/root 0 2011-08-04 00:29 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/
-drwxr-xr-x root/root 0 2011-08-04 00:29 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/raw/
--rw-r--r-- root/root 423 2011-08-04 00:29 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/raw/varMetadata.tab
--rw-r--r-- root/root 705 2011-08-04 00:29 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/raw/pData.tab
--rw-r--r-- root/root 6194 2011-08-04 00:29 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/raw/exprs.tab
-drwxr-xr-x root/root 0 2011-08-04 00:29 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/
--rw-r--r-- root/root 95238 2011-08-04 00:29 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/swrep.rda
--rw-r--r-- root/root 92336 2011-08-04 00:29 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/sample.exprSet.rda
--rw-r--r-- root/root 62219 2011-08-04 00:29 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/sample.exprSet.1.rda
--rw-r--r-- root/root 25005 2011-08-04 00:29 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/sample.eSet.rda
--rw-r--r-- root/root 167662 2011-08-04 00:29 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/golubMergeSub.rda
--rw-r--r-- root/root 4704 2011-08-04 00:29 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/exprSet.Rda
--rw-r--r-- root/root 62201 2011-08-04 00:29 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/eset.rda
--rw-r--r-- root/root 146 2011-08-04 00:29 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/container.Rda
--rw-r--r-- root/root 76485 2011-08-04 00:29 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/bbsym.rda
--rw-r--r-- root/root 231 2011-08-04 00:29 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/aggregator.Rda
--rw-r--r-- root/root 112 2011-08-04 00:29 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/VersionsNull.Rda
--rw-r--r-- root/root 105 2011-08-04 00:29 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/Versions.Rda
--rw-r--r-- root/root 183 2011-08-04 00:29 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/VersionedBiobase.Rda
--rw-r--r-- root/root 143 2011-08-04 00:29 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/Versioned.Rda
--rw-r--r-- root/root 1235 2011-08-04 00:29 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/SnpSet.Rda
--rw-r--r-- root/root 113 2011-08-04 00:29 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/ScalarCharacter.Rda
--rw-r--r-- root/root 524 2011-08-04 00:29 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/SWPD.rda
--rw-r--r-- root/root 802 2011-08-04 00:29 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/NChannelSet.Rda
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+-rw-r--r-- root/root 555 2011-11-02 09:39 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/2.0/MultiSet.Rda
+-rw-r--r-- root/root 143 2011-11-02 09:39 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/2.0/Versioned.Rda
+-rw-r--r-- root/root 1014 2011-11-02 09:39 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/2.0/AnnotatedDataFrame.Rda
+-rw-r--r-- root/root 4705 2011-11-02 09:39 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/2.0/exprSet.Rda
+-rw-r--r-- root/root 609 2011-11-02 09:39 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/2.0/SnpSet.Rda
+-rw-r--r-- root/root 110 2011-11-02 09:39 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/2.0/VersionsNull.Rda
+-rw-r--r-- root/root 4822 2011-11-02 09:39 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/2.0/ExpressionSet.Rda
+-rw-r--r-- root/root 795 2011-11-02 09:39 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/2.0/MIAME.Rda
+-rw-r--r-- root/root 183 2011-11-02 09:39 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/2.0/VersionedBiobase.Rda
+-rw-r--r-- root/root 146 2011-11-02 09:39 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/2.0/container.Rda
+drwxr-xr-x root/root 0 2011-11-02 09:39 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/1.8/
+-rw-r--r-- root/root 943 2011-11-02 09:39 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/1.8/phenoData.Rda
+-rw-r--r-- root/root 939 2011-11-02 09:39 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/1.8/AnnotatedDataFrame.Rda
+-rw-r--r-- root/root 4588 2011-11-02 09:39 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/1.8/exprSet.Rda
+-rw-r--r-- root/root 4678 2011-11-02 09:39 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/1.8/ExpressionSet.Rda
+-rw-r--r-- root/root 741 2011-11-02 09:39 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/1.8/MIAME.Rda
+drwxr-xr-x root/root 0 2011-11-02 09:39 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/raw/
+-rw-r--r-- root/root 705 2011-11-02 09:39 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/raw/pData.tab
+-rw-r--r-- root/root 6194 2011-11-02 09:39 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/raw/exprs.tab
+-rw-r--r-- root/root 423 2011-11-02 09:39 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/raw/varMetadata.tab
+drwxr-xr-x root/root 0 2011-11-02 09:39 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/
+-rw-r--r-- root/root 231 2011-11-02 09:39 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/aggregator.Rda
+-rw-r--r-- root/root 524 2011-11-02 09:39 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/SWPD.rda
+-rw-r--r-- root/root 105 2011-11-02 09:39 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/Versions.Rda
+-rw-r--r-- root/root 113 2011-11-02 09:39 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/ScalarCharacter.Rda
+-rw-r--r-- root/root 1166 2011-11-02 09:39 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/MultiSet.Rda
+-rw-r--r-- root/root 143 2011-11-02 09:39 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/Versioned.Rda
+-rw-r--r-- root/root 1016 2011-11-02 09:39 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/AnnotatedDataFrame.Rda
+-rw-r--r-- root/root 62219 2011-11-02 09:39 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/sample.exprSet.1.rda
+-rw-r--r-- root/root 76485 2011-11-02 09:39 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/bbsym.rda
+-rw-r--r-- root/root 92336 2011-11-02 09:39 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/sample.exprSet.rda
+-rw-r--r-- root/root 62201 2011-11-02 09:39 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/eset.rda
+-rw-r--r-- root/root 95238 2011-11-02 09:39 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/swrep.rda
+-rw-r--r-- root/root 4704 2011-11-02 09:39 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/exprSet.Rda
+-rw-r--r-- root/root 1235 2011-11-02 09:39 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/SnpSet.Rda
+-rw-r--r-- root/root 167662 2011-11-02 09:39 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/golubMergeSub.rda
+-rw-r--r-- root/root 112 2011-11-02 09:39 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/VersionsNull.Rda
+-rw-r--r-- root/root 5537 2011-11-02 09:39 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/ExpressionSet.Rda
+-rw-r--r-- root/root 795 2011-11-02 09:39 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/MIAME.Rda
+-rw-r--r-- root/root 802 2011-11-02 09:39 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/NChannelSet.Rda
+-rw-r--r-- root/root 25005 2011-11-02 09:39 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/sample.eSet.rda
+-rw-r--r-- root/root 183 2011-11-02 09:39 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/VersionedBiobase.Rda
+-rw-r--r-- root/root 146 2011-11-02 09:39 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/container.Rda
+-rw-r--r-- root/root 6194 2011-11-02 09:39 ./usr/lib/R/site-library/Biobase/UnitTests/ExpressionSet_test.R
+-rw-r--r-- root/root 2035 2011-11-02 09:39 ./usr/lib/R/site-library/Biobase/UnitTests/AssayData_test.R
+-rw-r--r-- root/root 1257 2011-11-02 09:39 ./usr/lib/R/site-library/Biobase/UnitTests/utilities.R
+-rw-r--r-- root/root 2040 2011-11-02 09:39 ./usr/lib/R/site-library/Biobase/UnitTests/unsaveSetSlot_test.R
+-rwxr-xr-x root/root 213 2011-11-02 09:39 ./usr/lib/R/site-library/Biobase/UnitTests/runfile.sh
+-rwxr-xr-x root/root 39 2011-11-02 09:39 ./usr/lib/R/site-library/Biobase/UnitTests/runall.sh
+-rw-r--r-- root/root 1515 2011-11-02 09:39 ./usr/lib/R/site-library/Biobase/UnitTests/matrix_test.R
+-rw-r--r-- root/root 8317 2011-11-02 09:39 ./usr/lib/R/site-library/Biobase/UnitTests/NChannelSet_test.R
+-rw-r--r-- root/root 8167 2011-11-02 09:39 ./usr/lib/R/site-library/Biobase/UnitTests/UpdateObject_test.R
+-rw-r--r-- root/root 4598 2011-11-02 09:39 ./usr/lib/R/site-library/Biobase/UnitTests/data.frame_test.R
+-rw-r--r-- root/root 180 2011-11-02 09:39 ./usr/lib/R/site-library/Biobase/UnitTests/checkClass_test.R
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -992,7 +1031,7 @@ Built successfully
│ Post Build │
└──────────────────────────────────────────────────────────────────────────────┘
-Purging /var/lib/schroot/mount/sid-ia64-sbuild-21a06d8e-b716-4420-b19b-3f7cf8711c40/build/buildd-r-bioc-biobase_2.12.2-1-ia64-3cP5pE
+Purging /var/lib/schroot/mount/sid-ia64-sbuild-a2f6cc44-8f1a-41de-a115-7fabdfdf5f80/build/buildd-r-bioc-biobase_2.14.0-1-ia64-lxygRA
Not cleaning session: cloned chroot in use
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -1000,19 +1039,19 @@ Not cleaning session: cloned chroot in use
└──────────────────────────────────────────────────────────────────────────────┘
Architecture: ia64
-Build-Space: 13944
-Build-Time: 55
+Build-Space: 9164
+Build-Time: 49
Distribution: sid
-Install-Time: 230
-Job: r-bioc-biobase_2.12.2-1
+Install-Time: 238
+Job: r-bioc-biobase_2.14.0-1
Package: r-bioc-biobase
-Package-Time: 338
-Source-Version: 2.12.2-1
-Space: 13944
+Package-Time: 340
+Source-Version: 2.14.0-1
+Space: 9164
Status: successful
-Version: 2.12.2-1
+Version: 2.14.0-1
────────────────────────────────────────────────────────────────────────────────
-Finished at 20110804-0030
-Build needed 00:05:38, 13944k disc space
-Signature with key 'C6591CE9' requested:
+Finished at 20111102-0939
+Build needed 00:05:40, 9164k disc space
+Signature with key '96FA48F4' requested:
diff --git a/info b/info
index d499d59..c2b81e8 100644
--- a/info
+++ b/info
@@ -1,11 +1,11 @@
-i386~1312417609~sid~successful
-s390~1312417612~sid~successful
-powerpc~1312417719~sid~successful
-ia64~1312417838~sid~successful
-kfreebsd-i386~1312417879~sid~successful
-kfreebsd-amd64~1312417892~sid~successful
-sparc~1312417924~sid~successful
-mips~1312417927~sid~successful
-mipsel~1312417944~sid~successful
-armel~1312418070~sid~successful
-hurd-i386~1312422749~sid~successful
+s390~1320213580~sid~successful
+i386~1320213794~sid~successful
+kfreebsd-amd64~1320213826~sid~successful
+sparc~1320213916~sid~successful
+kfreebsd-i386~1320214051~sid~successful
+armel~1320214063~sid~successful
+mips~1320214144~sid~successful
+hurd-i386~1320214440~sid~successful
+powerpc~1320218275~sid~successful
+mipsel~1320218939~sid~successful
+ia64~1320226793~sid~successful
diff --git a/kfreebsd-amd64.log b/kfreebsd-amd64.log
index 927d7d0..75a867f 100644
--- a/kfreebsd-amd64.log
+++ b/kfreebsd-amd64.log
@@ -1,59 +1,49 @@
-From buildd at fasch.debian.org Thu Aug 04 00:31:31 2011
-Return-path: <buildd at fasch.debian.org>
+From buildd at fano.debian.org Wed Nov 02 06:03:46 2011
+Return-path: <buildd at fano.debian.org>
Received: from merikanto.debian.org ([2001:858:2:2:216:35ff:fec4:a49a])
from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
CN=merikanto.debian.org,
EMAIL=hostmaster at merikanto.debian.org (verified)
by grieg.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
- (Exim 4.72) (envelope-from <buildd at fasch.debian.org>)
- id 1QolqV-0004nu-DW
- for logs at buildd.debian.org; Thu, 04 Aug 2011 00:31:31 +0000
-Received: from fasch.debian.org ([194.177.211.201])
+ (Exim 4.72) (envelope-from <buildd at fano.debian.org>)
+ id 1RLTvO-0007Sd-6e
+ for logs at buildd.debian.org; Wed, 02 Nov 2011 06:03:46 +0000
+Received: from fano.debian.org ([206.12.19.110])
from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
- CN=fasch.debian.org, EMAIL=hostmaster at fasch.debian.org (verified)
+ CN=fano.debian.org, EMAIL=hostmaster at fano.debian.org (verified)
by merikanto.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
- (Exim 4.72) (envelope-from <buildd at fasch.debian.org>)
- id 1QolqT-0000Lt-KE; Thu, 04 Aug 2011 00:31:29 +0000
-Received: from buildd by fasch.debian.org with local (Exim 4.72)
- (envelope-from <buildd at fasch.debian.org>)
- id 1QolqS-000L5v-1M; Thu, 04 Aug 2011 00:31:28 +0000
-Message-Id: <E1QolqS-000L5v-1M at fasch.debian.org>
+ (Exim 4.72) (envelope-from <buildd at fano.debian.org>)
+ id 1RLTvM-0007fP-UN; Wed, 02 Nov 2011 06:03:45 +0000
+Received: from buildd by fano.debian.org with local (Exim 4.72)
+ (envelope-from <buildd at fano.debian.org>)
+ id 1RLTvK-000Idr-Dx; Wed, 02 Nov 2011 06:03:42 +0000
+Message-Id: <E1RLTvK-000Idr-Dx at fano.debian.org>
MIME-Version: 1.0
Content-Transfer-Encoding: binary
X-Mailer: MIME::Lite 3.027 (F2.77; B3.08; Q3.08)
-Date: Thu, 4 Aug 2011 00:31:27 +0000
-From: buildd on fasch <buildd at fasch.debian.org>
+Date: Wed, 2 Nov 2011 06:03:42 +0000
+From: buildd on fano <buildd at fano.debian.org>
To: logs at buildd.debian.org,aurelien at aurel32.net,christoph at debian.org
-Subject: Log for successful build of r-bioc-biobase_2.12.2-1 on kfreebsd-amd64
+Subject: Log for successful build of r-bioc-biobase_2.14.0-1 on kfreebsd-amd64
(dist=sid)
-Key-Id: 56BAE008
+Key-Id: 911EAB69
Delivered-To: logs at buildd.debian.org
-sbuild (Debian sbuild) 0.61.0 (23 Feb 2011) on fasch.debian.org
+sbuild (Debian sbuild) 0.61.0 (23 Feb 2011) on fano.debian.org
╔══════════════════════════════════════════════════════════════════════════════╗
-║ r-bioc-biobase 2.12.2-1 (kfreebsd-amd64) 04 Aug 2011 00:25 ║
+║ r-bioc-biobase 2.14.0-1 (kfreebsd-amd64) 02 Nov 2011 06:00 ║
╚══════════════════════════════════════════════════════════════════════════════╝
Package: r-bioc-biobase
-Version: 2.12.2-1
-Source Version: 2.12.2-1
+Version: 2.14.0-1
+Source Version: 2.14.0-1
Architecture: kfreebsd-amd64
-Hit http://ftp.gr.debian.org sid InRelease
-Hit http://ftp.gr.debian.org sid/main Sources/DiffIndex
Hit http://incoming.debian.org sid InRelease
Ign http://incoming.debian.org InRelease
-Hit http://ftp.gr.debian.org sid/contrib Sources/DiffIndex
-Hit http://ftp.gr.debian.org sid/non-free Sources/DiffIndex
-Hit http://ftp.gr.debian.org sid/main kfreebsd-amd64 Packages/DiffIndex
-Hit http://ftp.gr.debian.org sid/contrib kfreebsd-amd64 Packages/DiffIndex
-Hit http://ftp.gr.debian.org sid/non-free kfreebsd-amd64 Packages/DiffIndex
-Ign http://ftp.gr.debian.org sid/contrib TranslationIndex
-Hit http://ftp.gr.debian.org sid/main TranslationIndex
-Ign http://ftp.gr.debian.org sid/non-free TranslationIndex
Get:1 http://incoming.debian.org Release.gpg [836 B]
-Ign http://ftp.gr.debian.org sid/contrib Translation-en
-Ign http://ftp.gr.debian.org sid/non-free Translation-en
+Get:2 http://mirror-ubc.debian.org sid InRelease [146 kB]
+Get:3 http://mirror-ubc.debian.org sid/main Sources/DiffIndex [2038 B]
Hit http://incoming.debian.org sid/main Sources/DiffIndex
Hit http://incoming.debian.org sid/contrib Sources/DiffIndex
Hit http://incoming.debian.org sid/non-free Sources/DiffIndex
@@ -63,13 +53,33 @@ Hit http://incoming.debian.org sid/non-free kfreebsd-amd64 Packages/DiffIndex
Ign http://incoming.debian.org sid/contrib TranslationIndex
Hit http://incoming.debian.org sid/main TranslationIndex
Ign http://incoming.debian.org sid/non-free TranslationIndex
-Get:2 http://incoming.debian.org Release [1604 B]
-Get:3 http://incoming.debian.org Sources [30.7 kB]
-Get:4 http://incoming.debian.org Packages [218 kB]
+Get:4 http://mirror-ubc.debian.org sid/contrib Sources/DiffIndex [2023 B]
+Hit http://mirror-ubc.debian.org sid/non-free Sources/DiffIndex
+Get:5 http://mirror-ubc.debian.org sid/main kfreebsd-amd64 Packages/DiffIndex [2038 B]
+Get:6 http://mirror-ubc.debian.org sid/contrib kfreebsd-amd64 Packages/DiffIndex [2023 B]
+Hit http://mirror-ubc.debian.org sid/non-free kfreebsd-amd64 Packages/DiffIndex
+Ign http://mirror-ubc.debian.org sid/contrib TranslationIndex
+Get:7 http://mirror-ubc.debian.org sid/main TranslationIndex [2045 B]
+Ign http://mirror-ubc.debian.org sid/non-free TranslationIndex
+Get:8 http://mirror-ubc.debian.org sid/main 2011-11-02-0213.19.pdiff [17.2 kB]
+Get:9 http://mirror-ubc.debian.org sid/contrib 2011-11-02-0213.19.pdiff [648 B]
+Get:10 http://mirror-ubc.debian.org sid/main kfreebsd-amd64 2011-11-02-0213.19.pdiff [21.8 kB]
+Get:11 http://mirror-ubc.debian.org sid/contrib kfreebsd-amd64 2011-11-02-0213.19.pdiff [534 B]
+Get:12 http://mirror-ubc.debian.org sid/main 2011-11-02-0213.19.pdiff [17.2 kB]
+Get:13 http://mirror-ubc.debian.org sid/non-free kfreebsd-amd64 Packages [86.9 kB]
+Get:14 http://incoming.debian.org Release [1604 B]
+Hit http://incoming.debian.org sid/non-free kfreebsd-amd64 Packages
+Ign http://mirror-ubc.debian.org sid/contrib Translation-en
+Ign http://mirror-ubc.debian.org sid/non-free Translation-en
+Get:15 http://incoming.debian.org Sources [49.2 kB]
+Get:16 http://incoming.debian.org Packages [352 kB]
+Get:17 http://mirror-ubc.debian.org sid/contrib 2011-11-02-0213.19.pdiff [648 B]
+Get:18 http://mirror-ubc.debian.org sid/main kfreebsd-amd64 2011-11-02-0213.19.pdiff [21.8 kB]
Ign http://incoming.debian.org sid/contrib Translation-en
Ign http://incoming.debian.org sid/non-free Translation-en
+Get:19 http://mirror-ubc.debian.org sid/contrib kfreebsd-amd64 2011-11-02-0213.19.pdiff [534 B]
Ign http://incoming.debian.org Translation-en
-Fetched 251 kB in 4s (57.5 kB/s)
+Fetched 687 kB in 13s (51.3 kB/s)
Reading package lists...
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -90,11 +100,11 @@ Building dependency tree...
Reading state information...
NOTICE: 'r-bioc-biobase' packaging is maintained in the 'Git' version control system at:
git://git.debian.org/git/debian-med/r-bioc-biobase.git
-Need to get 2229 kB of source archives.
-Get:1 http://incoming.debian.org/buildd-unstable/ r-bioc-biobase 2.12.2-1 (dsc) [1944 B]
-Get:2 http://incoming.debian.org/buildd-unstable/ r-bioc-biobase 2.12.2-1 (tar) [2222 kB]
-Get:3 http://incoming.debian.org/buildd-unstable/ r-bioc-biobase 2.12.2-1 (diff) [5417 B]
-Fetched 2229 kB in 3s (564 kB/s)
+Need to get 1934 kB of source archives.
+Get:1 http://incoming.debian.org/buildd-unstable/ r-bioc-biobase 2.14.0-1 (dsc) [2004 B]
+Get:2 http://incoming.debian.org/buildd-unstable/ r-bioc-biobase 2.14.0-1 (tar) [1926 kB]
+Get:3 http://incoming.debian.org/buildd-unstable/ r-bioc-biobase 2.14.0-1 (diff) [5645 B]
+Fetched 1934 kB in 2s (890 kB/s)
Download complete and in download only mode
Check arch
@@ -108,59 +118,60 @@ Check arch
Build-Depends: build-essential, fakeroot
Checking for already installed dependencies...
build-essential: already installed (11.5)
-fakeroot: already installed (1.16-1)
+fakeroot: already installed (1.18.1-1)
Checking for dependency conflicts...
Installing positive dependencies:
Reading package lists...
Building dependency tree...
Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 5 not upgraded.
+0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded.
Removing negative dependencies:
Reading package lists...
Building dependency tree...
Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 5 not upgraded.
+0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded.
Checking correctness of dependencies...
┌──────────────────────────────────────────────────────────────────────────────┐
│ Install r-bioc-biobase build dependencies (internal resolver) │
└──────────────────────────────────────────────────────────────────────────────┘
-Build-Depends: base-files, base-passwd, bash, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, freebsd-utils, grep, gzip, hostname, ncurses-base, ncurses-bin, perl-base, sed, login, sysvinit-utils, sysvinit, tar, bsdutils, util-linux, libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), cdbs, debhelper (>= 8), r-base-dev
+Build-Depends: base-files, base-passwd, bash, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, freebsd-utils, grep, gzip, hostname, ncurses-base, ncurses-bin, perl-base, sed, login, sysvinit-utils, sysvinit, tar, bsdutils, util-linux, libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), cdbs, debhelper (>= 8), r-base-dev (>= 2.10)
Checking for already installed dependencies...
base-files: already installed (6.5)
base-passwd: already installed (3.5.23)
bash: already installed (4.1-3)
-coreutils: already installed (8.5-1)
-dash: already installed (0.5.5.1-7.4)
-debianutils: already installed (4.0.2)
-diffutils: already installed (1:3.0-1)
-dpkg: already installed (1.16.0.3)
-e2fsprogs: already installed (1.42~WIP-2011-07-02-1)
+coreutils: already installed (8.13-3)
+dash: already installed (0.5.7-2)
+debianutils: already installed (4.0.4)
+diffutils: already installed (1:3.2-1)
+dpkg: already installed (1.16.1.1)
+e2fsprogs: already installed (1.42~WIP-2011-10-16-1)
findutils: already installed (4.4.2-1)
freebsd-utils: already installed (8.2+ds2-5)
-grep: already installed (2.9-1)
+grep: already installed (2.9-2)
gzip: already installed (1.4-1)
hostname: already installed (3.06)
-ncurses-base: already installed (5.9-1)
-ncurses-bin: already installed (5.9-1)
-perl-base: already installed (5.12.4-2)
+ncurses-base: already installed (5.9-2)
+ncurses-bin: already installed (5.9-2)
+perl-base: already installed (5.12.4-6)
sed: already installed (4.2.1-9)
login: already installed (1:4.1.4.2+svn3283-3)
-sysvinit-utils: already installed (2.88dsf-13.11)
-sysvinit: already installed (2.88dsf-13.11)
+sysvinit-utils: already installed (2.88dsf-13.12)
+sysvinit: already installed (2.88dsf-13.12)
tar: already installed (1.25-3)
-bsdutils: already installed (1:2.19.1-4)
-util-linux: already installed (2.19.1-4)
+bsdutils: already installed (1:2.19.1-5)
+util-linux: already installed (2.19.1-5)
libc6-dev: already installed (~*=PROVIDED=*=)
-gcc: already installed (4:4.6.1-2 >= 4:4.4.3 is satisfied)
-g++: already installed (4:4.6.1-2 >= 4:4.4.3 is satisfied)
+gcc: already installed (4:4.6.1-3 >= 4:4.4.3 is satisfied)
+g++: already installed (4:4.6.1-3 >= 4:4.4.3 is satisfied)
make: already installed (3.81-8.1)
-dpkg-dev: already installed (1.16.0.3 >= 1.13.5 is satisfied)
+dpkg-dev: already installed (1.16.1.1 >= 1.13.5 is satisfied)
cdbs: missing
debhelper: missing
-Using default version 8.9.3
+Using default version 8.9.8
r-base-dev: missing
+Using default version 2.14.0-1
Checking for dependency conflicts...
Installing positive dependencies: cdbs debhelper r-base-dev
Reading package lists...
@@ -168,269 +179,272 @@ Building dependency tree...
Reading state information...
The following extra packages will be installed:
dpatch file fontconfig fontconfig-config gettext gettext-base gfortran
- gfortran-4.6 groff-base html2text intltool-debian libblas-dev libblas3gf
- libbz2-dev libcairo2 libcroco3 libdatrie1 libfontconfig1 libfreetype6
- libgfortran3 libglib2.0-0 libice6 libjpeg62 libjpeg8 libjpeg8-dev
- liblapack-dev liblapack3gf libmagic1 libncurses5-dev libpango1.0-0
- libpaper-utils libpaper1 libpcre3 libpcre3-dev libpcrecpp0 libpipeline1
- libpixman-1-0 libpng12-dev libreadline-dev libreadline6-dev libsm6
- libthai-data libthai0 libtiff4 libunistring0 libx11-6 libx11-data libxau6
- libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2
- libxrender1 libxss1 libxt6 man-db po-debconf r-base-core tcl8.5 tk8.5
- ttf-dejavu-core ucf unzip x11-common xdg-utils zip zlib1g-dev
+ gfortran-4.6 html2text intltool-debian libblas-dev libblas3gf libbz2-dev
+ libcairo2 libcroco3 libdatrie1 libfontconfig1 libfreetype6 libgfortran3
+ libglib2.0-0 libice6 libjpeg8 libjpeg8-dev liblapack-dev liblapack3gf
+ libmagic1 libncurses5-dev libpango1.0-0 libpaper-utils libpaper1
+ libpcre3-dev libpcrecpp0 libpipeline1 libpixman-1-0 libpng12-dev
+ libreadline-dev libreadline6-dev libsm6 libthai-data libthai0 libtiff4
+ libtinfo-dev libunistring0 libx11-6 libx11-data libxau6 libxcb-render0
+ libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxrender1 libxss1
+ libxt6 man-db po-debconf r-base-core tcl8.5 tk8.5 ttf-dejavu-core ucf unzip
+ x11-common xdg-utils zip zlib1g-dev
Suggested packages:
devscripts dh-make curl defoma gettext-doc gfortran-multilib gfortran-doc
- gfortran-4.6-multilib gfortran-4.6-doc libgfortran3-dbg groff ncurses-doc
+ gfortran-4.6-multilib gfortran-4.6-doc libgfortran3-dbg ncurses-doc
ttf-baekmuk ttf-arphic-gbsn00lp ttf-arphic-bsmi00lp ttf-arphic-gkai00mp
- ttf-arphic-bkai00mp less www-browser libmail-box-perl r-doc-info r-doc-pdf
- r-mathlib r-base-html tclreadline gvfs-bin
+ ttf-arphic-bkai00mp groff less www-browser libmail-box-perl r-doc-info
+ r-doc-pdf r-mathlib r-base-html tclreadline gvfs-bin
Recommended packages:
autotools-dev patchutils autopoint libglib2.0-data shared-mime-info
x-ttcidfont-conf xml-core libmail-sendmail-perl r-recommended r-doc-html
xterm x-terminal-emulator libfile-mimeinfo-perl x11-utils x11-xserver-utils
The following NEW packages will be installed:
cdbs debhelper dpatch file fontconfig fontconfig-config gettext gettext-base
- gfortran gfortran-4.6 groff-base html2text intltool-debian libblas-dev
- libblas3gf libbz2-dev libcairo2 libcroco3 libdatrie1 libfontconfig1
- libfreetype6 libgfortran3 libglib2.0-0 libice6 libjpeg62 libjpeg8
- libjpeg8-dev liblapack-dev liblapack3gf libmagic1 libncurses5-dev
- libpango1.0-0 libpaper-utils libpaper1 libpcre3 libpcre3-dev libpcrecpp0
- libpipeline1 libpixman-1-0 libpng12-dev libreadline-dev libreadline6-dev
- libsm6 libthai-data libthai0 libtiff4 libunistring0 libx11-6 libx11-data
- libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2
- libxml2 libxrender1 libxss1 libxt6 man-db po-debconf r-base-core r-base-dev
- tcl8.5 tk8.5 ttf-dejavu-core ucf unzip x11-common xdg-utils zip zlib1g-dev
+ gfortran gfortran-4.6 html2text intltool-debian libblas-dev libblas3gf
+ libbz2-dev libcairo2 libcroco3 libdatrie1 libfontconfig1 libfreetype6
+ libgfortran3 libglib2.0-0 libice6 libjpeg8 libjpeg8-dev liblapack-dev
+ liblapack3gf libmagic1 libncurses5-dev libpango1.0-0 libpaper-utils
+ libpaper1 libpcre3-dev libpcrecpp0 libpipeline1 libpixman-1-0 libpng12-dev
+ libreadline-dev libreadline6-dev libsm6 libthai-data libthai0 libtiff4
+ libtinfo-dev libunistring0 libx11-6 libx11-data libxau6 libxcb-render0
+ libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxrender1 libxss1
+ libxt6 man-db po-debconf r-base-core r-base-dev tcl8.5 tk8.5 ttf-dejavu-core
+ ucf unzip x11-common xdg-utils zip zlib1g-dev
+0 upgraded, 71 newly installed, 0 to remove and 1 not upgraded.
+Need to get 25.0 MB/55.3 MB of archives.
+After this operation, 120 MB of additional disk space will be used.
+Get:1 http://mirror-ubc.debian.org/debian/ sid/main libblas-dev kfreebsd-amd64 1.2.20110419-2 [311 kB]
+Get:2 http://mirror-ubc.debian.org/debian/ sid/main libbz2-dev kfreebsd-amd64 1.0.5-7 [32.0 kB]
+Get:3 http://mirror-ubc.debian.org/debian/ sid/main liblapack-dev kfreebsd-amd64 3.3.1-1 [4882 kB]
+Get:4 http://mirror-ubc.debian.org/debian/ sid/main zip kfreebsd-amd64 3.0-4 [333 kB]
+Get:5 http://mirror-ubc.debian.org/debian/ sid/main unzip kfreebsd-amd64 6.0-5 [191 kB]
+Get:6 http://mirror-ubc.debian.org/debian/ sid/main xdg-utils all 1.1.0~rc1-2 [70.2 kB]
+Get:7 http://mirror-ubc.debian.org/debian/ sid/main r-base-core kfreebsd-amd64 2.14.0-1 [19.2 MB]
+Get:8 http://mirror-ubc.debian.org/debian/ sid/main r-base-dev all 2.14.0-1 [3488 B]
debconf: delaying package configuration, since apt-utils is not installed
-0 upgraded, 73 newly installed, 0 to remove and 5 not upgraded.
-Need to get 0 B/52.7 MB of archives.
-After this operation, 126 MB of additional disk space will be used.
-Selecting previously deselected package libpipeline1.
-(Reading database ... 12202 files and directories currently installed.)
-Unpacking libpipeline1 (from .../libpipeline1_1.2.0-3_kfreebsd-amd64.deb) ...
-Selecting previously deselected package libdatrie1.
+Fetched 25.0 MB in 0s (25.9 MB/s)
+Selecting previously unselected package libpipeline1.
+(Reading database ... 12411 files and directories currently installed.)
+Unpacking libpipeline1 (from .../libpipeline1_1.2.0-4_kfreebsd-amd64.deb) ...
+Selecting previously unselected package libglib2.0-0.
+Unpacking libglib2.0-0 (from .../libglib2.0-0_2.28.8-1_kfreebsd-amd64.deb) ...
+Selecting previously unselected package libxml2.
+Unpacking libxml2 (from .../libxml2_2.7.8.dfsg-5_kfreebsd-amd64.deb) ...
+Selecting previously unselected package libcroco3.
+Unpacking libcroco3 (from .../libcroco3_0.6.2-2_kfreebsd-amd64.deb) ...
+Selecting previously unselected package libdatrie1.
Unpacking libdatrie1 (from .../libdatrie1_0.2.4-3_kfreebsd-amd64.deb) ...
-Selecting previously deselected package libfreetype6.
-Unpacking libfreetype6 (from .../libfreetype6_2.4.4-2_kfreebsd-amd64.deb) ...
-Selecting previously deselected package ucf.
+Selecting previously unselected package libfreetype6.
+Unpacking libfreetype6 (from .../libfreetype6_2.4.7-2_kfreebsd-amd64.deb) ...
+Selecting previously unselected package ucf.
Unpacking ucf (from .../ucf_3.0025+nmu2_all.deb) ...
Moving old data out of the way
-Selecting previously deselected package ttf-dejavu-core.
-Unpacking ttf-dejavu-core (from .../ttf-dejavu-core_2.33-1_all.deb) ...
-Selecting previously deselected package fontconfig-config.
+Selecting previously unselected package ttf-dejavu-core.
+Unpacking ttf-dejavu-core (from .../ttf-dejavu-core_2.33-2_all.deb) ...
+Selecting previously unselected package fontconfig-config.
Unpacking fontconfig-config (from .../fontconfig-config_2.8.0-3_all.deb) ...
-Selecting previously deselected package libfontconfig1.
+Selecting previously unselected package libfontconfig1.
Unpacking libfontconfig1 (from .../libfontconfig1_2.8.0-3_kfreebsd-amd64.deb) ...
-Selecting previously deselected package libgfortran3.
-Unpacking libgfortran3 (from .../libgfortran3_4.6.1-4_kfreebsd-amd64.deb) ...
-Selecting previously deselected package x11-common.
-Unpacking x11-common (from .../x11-common_1%3a7.6+7_all.deb) ...
-Selecting previously deselected package libice6.
+Selecting previously unselected package libgfortran3.
+Unpacking libgfortran3 (from .../libgfortran3_4.6.1-15_kfreebsd-amd64.deb) ...
+Selecting previously unselected package x11-common.
+Unpacking x11-common (from .../x11-common_1%3a7.6+9_all.deb) ...
+Selecting previously unselected package libice6.
Unpacking libice6 (from .../libice6_2%3a1.0.7-2_kfreebsd-amd64.deb) ...
-Selecting previously deselected package libpixman-1-0.
-Unpacking libpixman-1-0 (from .../libpixman-1-0_0.22.2-1_kfreebsd-amd64.deb) ...
-Selecting previously deselected package libxau6.
+Selecting previously unselected package libpixman-1-0.
+Unpacking libpixman-1-0 (from .../libpixman-1-0_0.23.8-1_kfreebsd-amd64.deb) ...
+Selecting previously unselected package libxau6.
Unpacking libxau6 (from .../libxau6_1%3a1.0.6-3_kfreebsd-amd64.deb) ...
-Selecting previously deselected package libxdmcp6.
+Selecting previously unselected package libxdmcp6.
Unpacking libxdmcp6 (from .../libxdmcp6_1%3a1.1.0-3_kfreebsd-amd64.deb) ...
-Selecting previously deselected package libxcb1.
+Selecting previously unselected package libxcb1.
Unpacking libxcb1 (from .../libxcb1_1.7-3_kfreebsd-amd64.deb) ...
-Selecting previously deselected package libx11-data.
-Unpacking libx11-data (from .../libx11-data_2%3a1.4.4-1_all.deb) ...
-Selecting previously deselected package libx11-6.
-Unpacking libx11-6 (from .../libx11-6_2%3a1.4.4-1_kfreebsd-amd64.deb) ...
-Selecting previously deselected package libxcb-render0.
+Selecting previously unselected package libx11-data.
+Unpacking libx11-data (from .../libx11-data_2%3a1.4.4-2_all.deb) ...
+Selecting previously unselected package libx11-6.
+Unpacking libx11-6 (from .../libx11-6_2%3a1.4.4-2_kfreebsd-amd64.deb) ...
+Selecting previously unselected package libxcb-render0.
Unpacking libxcb-render0 (from .../libxcb-render0_1.7-3_kfreebsd-amd64.deb) ...
-Selecting previously deselected package libxcb-shm0.
+Selecting previously unselected package libxcb-shm0.
Unpacking libxcb-shm0 (from .../libxcb-shm0_1.7-3_kfreebsd-amd64.deb) ...
-Selecting previously deselected package libxrender1.
+Selecting previously unselected package libxrender1.
Unpacking libxrender1 (from .../libxrender1_1%3a0.9.6-2_kfreebsd-amd64.deb) ...
-Selecting previously deselected package libcairo2.
+Selecting previously unselected package libcairo2.
Unpacking libcairo2 (from .../libcairo2_1.10.2-6.1_kfreebsd-amd64.deb) ...
-Selecting previously deselected package libpcre3.
-Unpacking libpcre3 (from .../libpcre3_8.12-3_kfreebsd-amd64.deb) ...
-Selecting previously deselected package libglib2.0-0.
-Unpacking libglib2.0-0 (from .../libglib2.0-0_2.28.6-1_kfreebsd-amd64.deb) ...
-Selecting previously deselected package libthai-data.
+Selecting previously unselected package libthai-data.
Unpacking libthai-data (from .../libthai-data_0.1.15-2_all.deb) ...
-Selecting previously deselected package libthai0.
+Selecting previously unselected package libthai0.
Unpacking libthai0 (from .../libthai0_0.1.15-2_kfreebsd-amd64.deb) ...
-Selecting previously deselected package libxft2.
+Selecting previously unselected package libxft2.
Unpacking libxft2 (from .../libxft2_2.2.0-3_kfreebsd-amd64.deb) ...
-Selecting previously deselected package fontconfig.
+Selecting previously unselected package fontconfig.
Unpacking fontconfig (from .../fontconfig_2.8.0-3_kfreebsd-amd64.deb) ...
-Selecting previously deselected package libpango1.0-0.
-Unpacking libpango1.0-0 (from .../libpango1.0-0_1.28.4-2_kfreebsd-amd64.deb) ...
-Selecting previously deselected package libsm6.
+Selecting previously unselected package libpango1.0-0.
+Unpacking libpango1.0-0 (from .../libpango1.0-0_1.29.4-2_kfreebsd-amd64.deb) ...
+Selecting previously unselected package libpcrecpp0.
+Unpacking libpcrecpp0 (from .../libpcrecpp0_8.12-4_kfreebsd-amd64.deb) ...
+Selecting previously unselected package libsm6.
Unpacking libsm6 (from .../libsm6_2%3a1.2.0-2_kfreebsd-amd64.deb) ...
-Selecting previously deselected package libxext6.
+Selecting previously unselected package libjpeg8.
+Unpacking libjpeg8 (from .../libjpeg8_8c-2_kfreebsd-amd64.deb) ...
+Selecting previously unselected package libtiff4.
+Unpacking libtiff4 (from .../libtiff4_3.9.5-2_kfreebsd-amd64.deb) ...
+Selecting previously unselected package libunistring0.
+Unpacking libunistring0 (from .../libunistring0_0.9.3-5_kfreebsd-amd64.deb) ...
+Selecting previously unselected package libxext6.
Unpacking libxext6 (from .../libxext6_2%3a1.3.0-3_kfreebsd-amd64.deb) ...
-Selecting previously deselected package libxt6.
+Selecting previously unselected package libxss1.
+Unpacking libxss1 (from .../libxss1_1%3a1.2.1-2_kfreebsd-amd64.deb) ...
+Selecting previously unselected package libxt6.
Unpacking libxt6 (from .../libxt6_1%3a1.1.1-2_kfreebsd-amd64.deb) ...
-Selecting previously deselected package groff-base.
-Unpacking groff-base (from .../groff-base_1.21-6_kfreebsd-amd64.deb) ...
-Selecting previously deselected package man-db.
+Selecting previously unselected package man-db.
Unpacking man-db (from .../man-db_2.6.0.2-2_kfreebsd-amd64.deb) ...
-Selecting previously deselected package libmagic1.
-Unpacking libmagic1 (from .../libmagic1_5.04-5+b1_kfreebsd-amd64.deb) ...
-Selecting previously deselected package file.
-Unpacking file (from .../file_5.04-5+b1_kfreebsd-amd64.deb) ...
-Selecting previously deselected package gettext-base.
-Unpacking gettext-base (from .../gettext-base_0.18.1.1-3_kfreebsd-amd64.deb) ...
-Selecting previously deselected package libxml2.
-Unpacking libxml2 (from .../libxml2_2.7.8.dfsg-4_kfreebsd-amd64.deb) ...
-Selecting previously deselected package html2text.
+Selecting previously unselected package libmagic1.
+Unpacking libmagic1 (from .../libmagic1_5.09-2_kfreebsd-amd64.deb) ...
+Selecting previously unselected package file.
+Unpacking file (from .../file_5.09-2_kfreebsd-amd64.deb) ...
+Selecting previously unselected package gettext-base.
+Unpacking gettext-base (from .../gettext-base_0.18.1.1-5_kfreebsd-amd64.deb) ...
+Selecting previously unselected package cdbs.
+Unpacking cdbs (from .../archives/cdbs_0.4.99_all.deb) ...
+Selecting previously unselected package html2text.
Unpacking html2text (from .../html2text_1.3.2a-15_kfreebsd-amd64.deb) ...
-Selecting previously deselected package libcroco3.
-Unpacking libcroco3 (from .../libcroco3_0.6.2-1_kfreebsd-amd64.deb) ...
-Selecting previously deselected package libunistring0.
-Unpacking libunistring0 (from .../libunistring0_0.9.3-4_kfreebsd-amd64.deb) ...
-Selecting previously deselected package gettext.
-Unpacking gettext (from .../gettext_0.18.1.1-3_kfreebsd-amd64.deb) ...
-Selecting previously deselected package intltool-debian.
+Selecting previously unselected package gettext.
+Unpacking gettext (from .../gettext_0.18.1.1-5_kfreebsd-amd64.deb) ...
+Selecting previously unselected package intltool-debian.
Unpacking intltool-debian (from .../intltool-debian_0.35.0+20060710.1_all.deb) ...
-Selecting previously deselected package po-debconf.
+Selecting previously unselected package po-debconf.
Unpacking po-debconf (from .../po-debconf_1.0.16+nmu1_all.deb) ...
-Selecting previously deselected package debhelper.
-Unpacking debhelper (from .../debhelper_8.9.3_all.deb) ...
-Selecting previously deselected package cdbs.
-Unpacking cdbs (from .../archives/cdbs_0.4.96_all.deb) ...
-Selecting previously deselected package dpatch.
-Unpacking dpatch (from .../archives/dpatch_2.0.31_all.deb) ...
-Selecting previously deselected package gfortran-4.6.
-Unpacking gfortran-4.6 (from .../gfortran-4.6_4.6.1-4_kfreebsd-amd64.deb) ...
-Selecting previously deselected package gfortran.
-Unpacking gfortran (from .../gfortran_4%3a4.6.1-2_kfreebsd-amd64.deb) ...
-Selecting previously deselected package libblas3gf.
-Unpacking libblas3gf (from .../libblas3gf_1.2-8_kfreebsd-amd64.deb) ...
-Selecting previously deselected package libblas-dev.
-Unpacking libblas-dev (from .../libblas-dev_1.2-8_kfreebsd-amd64.deb) ...
-Selecting previously deselected package libbz2-dev.
-Unpacking libbz2-dev (from .../libbz2-dev_1.0.5-6_kfreebsd-amd64.deb) ...
-Selecting previously deselected package libjpeg62.
-Unpacking libjpeg62 (from .../libjpeg62_6b1-2_kfreebsd-amd64.deb) ...
-Selecting previously deselected package libjpeg8.
-Unpacking libjpeg8 (from .../libjpeg8_8c-2_kfreebsd-amd64.deb) ...
-Selecting previously deselected package libjpeg8-dev.
+Selecting previously unselected package debhelper.
+Unpacking debhelper (from .../debhelper_8.9.8_all.deb) ...
+Selecting previously unselected package dpatch.
+Unpacking dpatch (from .../archives/dpatch_2.0.33_all.deb) ...
+Selecting previously unselected package gfortran-4.6.
+Unpacking gfortran-4.6 (from .../gfortran-4.6_4.6.1-15_kfreebsd-amd64.deb) ...
+Selecting previously unselected package gfortran.
+Unpacking gfortran (from .../gfortran_4%3a4.6.1-3_kfreebsd-amd64.deb) ...
+Selecting previously unselected package libblas3gf.
+Unpacking libblas3gf (from .../libblas3gf_1.2.20110419-2_kfreebsd-amd64.deb) ...
+Selecting previously unselected package libblas-dev.
+Unpacking libblas-dev (from .../libblas-dev_1.2.20110419-2_kfreebsd-amd64.deb) ...
+Selecting previously unselected package libbz2-dev.
+Unpacking libbz2-dev (from .../libbz2-dev_1.0.5-7_kfreebsd-amd64.deb) ...
+Selecting previously unselected package libjpeg8-dev.
Unpacking libjpeg8-dev (from .../libjpeg8-dev_8c-2_kfreebsd-amd64.deb) ...
-Selecting previously deselected package liblapack3gf.
-Unpacking liblapack3gf (from .../liblapack3gf_3.3.0-4_kfreebsd-amd64.deb) ...
-Selecting previously deselected package liblapack-dev.
-Unpacking liblapack-dev (from .../liblapack-dev_3.3.0-4_kfreebsd-amd64.deb) ...
-Selecting previously deselected package libncurses5-dev.
-Unpacking libncurses5-dev (from .../libncurses5-dev_5.9-1_kfreebsd-amd64.deb) ...
-Selecting previously deselected package libpaper1.
+Selecting previously unselected package liblapack3gf.
+Unpacking liblapack3gf (from .../liblapack3gf_3.3.1-1_kfreebsd-amd64.deb) ...
+Selecting previously unselected package liblapack-dev.
+Unpacking liblapack-dev (from .../liblapack-dev_3.3.1-1_kfreebsd-amd64.deb) ...
+Selecting previously unselected package libtinfo-dev.
+Unpacking libtinfo-dev (from .../libtinfo-dev_5.9-2_kfreebsd-amd64.deb) ...
+Selecting previously unselected package libncurses5-dev.
+Unpacking libncurses5-dev (from .../libncurses5-dev_5.9-2_kfreebsd-amd64.deb) ...
+Selecting previously unselected package libpaper1.
Unpacking libpaper1 (from .../libpaper1_1.1.24+nmu1_kfreebsd-amd64.deb) ...
-Selecting previously deselected package libpaper-utils.
+Selecting previously unselected package libpaper-utils.
Unpacking libpaper-utils (from .../libpaper-utils_1.1.24+nmu1_kfreebsd-amd64.deb) ...
-Selecting previously deselected package libpcrecpp0.
-Unpacking libpcrecpp0 (from .../libpcrecpp0_8.12-3_kfreebsd-amd64.deb) ...
-Selecting previously deselected package libpcre3-dev.
-Unpacking libpcre3-dev (from .../libpcre3-dev_8.12-3_kfreebsd-amd64.deb) ...
-Selecting previously deselected package zlib1g-dev.
+Selecting previously unselected package libpcre3-dev.
+Unpacking libpcre3-dev (from .../libpcre3-dev_8.12-4_kfreebsd-amd64.deb) ...
+Selecting previously unselected package zlib1g-dev.
Unpacking zlib1g-dev (from .../zlib1g-dev_1%3a1.2.3.4.dfsg-3_kfreebsd-amd64.deb) ...
-Selecting previously deselected package libpng12-dev.
+Selecting previously unselected package libpng12-dev.
Unpacking libpng12-dev (from .../libpng12-dev_1.2.46-3_kfreebsd-amd64.deb) ...
-Selecting previously deselected package libreadline6-dev.
-Unpacking libreadline6-dev (from .../libreadline6-dev_6.2-2_kfreebsd-amd64.deb) ...
-Selecting previously deselected package libreadline-dev.
-Unpacking libreadline-dev (from .../libreadline-dev_6.2-2_kfreebsd-amd64.deb) ...
-Selecting previously deselected package libtiff4.
-Unpacking libtiff4 (from .../libtiff4_3.9.5-1_kfreebsd-amd64.deb) ...
-Selecting previously deselected package libxss1.
-Unpacking libxss1 (from .../libxss1_1%3a1.2.1-1_kfreebsd-amd64.deb) ...
-Selecting previously deselected package zip.
+Selecting previously unselected package libreadline6-dev.
+Unpacking libreadline6-dev (from .../libreadline6-dev_6.2-7_kfreebsd-amd64.deb) ...
+Selecting previously unselected package libreadline-dev.
+Unpacking libreadline-dev (from .../libreadline-dev_6.2-7_kfreebsd-amd64.deb) ...
+Selecting previously unselected package zip.
Unpacking zip (from .../zip_3.0-4_kfreebsd-amd64.deb) ...
-Selecting previously deselected package unzip.
+Selecting previously unselected package unzip.
Unpacking unzip (from .../unzip_6.0-5_kfreebsd-amd64.deb) ...
-Selecting previously deselected package xdg-utils.
+Selecting previously unselected package xdg-utils.
Unpacking xdg-utils (from .../xdg-utils_1.1.0~rc1-2_all.deb) ...
-Selecting previously deselected package tcl8.5.
+Selecting previously unselected package tcl8.5.
Unpacking tcl8.5 (from .../tcl8.5_8.5.10-1_kfreebsd-amd64.deb) ...
-Selecting previously deselected package tk8.5.
+Selecting previously unselected package tk8.5.
Unpacking tk8.5 (from .../tk8.5_8.5.10-1_kfreebsd-amd64.deb) ...
-Selecting previously deselected package r-base-core.
-Unpacking r-base-core (from .../r-base-core_2.13.1-1_kfreebsd-amd64.deb) ...
-Selecting previously deselected package r-base-dev.
-Unpacking r-base-dev (from .../r-base-dev_2.13.1-1_all.deb) ...
-Setting up libpipeline1 (1.2.0-3) ...
+Selecting previously unselected package r-base-core.
+Unpacking r-base-core (from .../r-base-core_2.14.0-1_kfreebsd-amd64.deb) ...
+Selecting previously unselected package r-base-dev.
+Unpacking r-base-dev (from .../r-base-dev_2.14.0-1_all.deb) ...
+Setting up libpipeline1 (1.2.0-4) ...
+Setting up libglib2.0-0 (2.28.8-1) ...
+No schema files found: doing nothing.
+Setting up libxml2 (2.7.8.dfsg-5) ...
+Setting up libcroco3 (0.6.2-2) ...
Setting up libdatrie1 (0.2.4-3) ...
-Setting up libfreetype6 (2.4.4-2) ...
+Setting up libfreetype6 (2.4.7-2) ...
Setting up ucf (3.0025+nmu2) ...
-Setting up ttf-dejavu-core (2.33-1) ...
+Setting up ttf-dejavu-core (2.33-2) ...
Setting up fontconfig-config (2.8.0-3) ...
Setting up libfontconfig1 (2.8.0-3) ...
-Setting up libgfortran3 (4.6.1-4) ...
-Setting up x11-common (1:7.6+7) ...
+Setting up libgfortran3 (4.6.1-15) ...
+Setting up x11-common (1:7.6+9) ...
All runlevel operations denied by policy
invoke-rc.d: policy-rc.d denied execution of start.
Setting up libice6 (2:1.0.7-2) ...
-Setting up libpixman-1-0 (0.22.2-1) ...
+Setting up libpixman-1-0 (0.23.8-1) ...
Setting up libxau6 (1:1.0.6-3) ...
Setting up libxdmcp6 (1:1.1.0-3) ...
Setting up libxcb1 (1.7-3) ...
-Setting up libx11-data (2:1.4.4-1) ...
-Setting up libx11-6 (2:1.4.4-1) ...
+Setting up libx11-data (2:1.4.4-2) ...
+Setting up libx11-6 (2:1.4.4-2) ...
Setting up libxcb-render0 (1.7-3) ...
Setting up libxcb-shm0 (1.7-3) ...
Setting up libxrender1 (1:0.9.6-2) ...
Setting up libcairo2 (1.10.2-6.1) ...
-Setting up libpcre3 (8.12-3) ...
-Setting up libglib2.0-0 (2.28.6-1) ...
-No schema files found: doing nothing.
Setting up libthai-data (0.1.15-2) ...
Setting up libthai0 (0.1.15-2) ...
Setting up libxft2 (2.2.0-3) ...
Setting up fontconfig (2.8.0-3) ...
Cleaning up old fontconfig caches... done.
Regenerating fonts cache... done.
-Setting up libpango1.0-0 (1.28.4-2) ...
+Setting up libpango1.0-0 (1.29.4-2) ...
+Setting up libpcrecpp0 (8.12-4) ...
Setting up libsm6 (2:1.2.0-2) ...
+Setting up libjpeg8 (8c-2) ...
+Setting up libtiff4 (3.9.5-2) ...
+Setting up libunistring0 (0.9.3-5) ...
Setting up libxext6 (2:1.3.0-3) ...
+Setting up libxss1 (1:1.2.1-2) ...
Setting up libxt6 (1:1.1.1-2) ...
-Setting up groff-base (1.21-6) ...
Setting up man-db (2.6.0.2-2) ...
Building database of manual pages ...
-Setting up libmagic1 (5.04-5+b1) ...
-Setting up file (5.04-5+b1) ...
-Setting up gettext-base (0.18.1.1-3) ...
-Setting up libxml2 (2.7.8.dfsg-4) ...
+Setting up libmagic1 (5.09-2) ...
+Setting up file (5.09-2) ...
+Setting up gettext-base (0.18.1.1-5) ...
+Setting up cdbs (0.4.99) ...
Setting up html2text (1.3.2a-15) ...
-Setting up libcroco3 (0.6.2-1) ...
-Setting up libunistring0 (0.9.3-4) ...
-Setting up gettext (0.18.1.1-3) ...
+Setting up gettext (0.18.1.1-5) ...
Setting up intltool-debian (0.35.0+20060710.1) ...
Setting up po-debconf (1.0.16+nmu1) ...
-Setting up debhelper (8.9.3) ...
-Setting up cdbs (0.4.96) ...
-Setting up dpatch (2.0.31) ...
-Setting up gfortran-4.6 (4.6.1-4) ...
-Setting up gfortran (4:4.6.1-2) ...
+Setting up debhelper (8.9.8) ...
+Setting up dpatch (2.0.33) ...
+Setting up gfortran-4.6 (4.6.1-15) ...
+Setting up gfortran (4:4.6.1-3) ...
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode.
-Setting up libblas3gf (1.2-8) ...
+Setting up libblas3gf (1.2.20110419-2) ...
update-alternatives: using /usr/lib/libblas/libblas.so.3gf to provide /usr/lib/libblas.so.3gf (libblas.so.3gf) in auto mode.
-Setting up libblas-dev (1.2-8) ...
+Setting up libblas-dev (1.2.20110419-2) ...
update-alternatives: using /usr/lib/libblas/libblas.so to provide /usr/lib/libblas.so (libblas.so) in auto mode.
-Setting up libbz2-dev (1.0.5-6) ...
-Setting up libjpeg62 (6b1-2) ...
-Setting up libjpeg8 (8c-2) ...
+Setting up libbz2-dev (1.0.5-7) ...
Setting up libjpeg8-dev (8c-2) ...
-Setting up liblapack3gf (3.3.0-4) ...
+Setting up liblapack3gf (3.3.1-1) ...
update-alternatives: using /usr/lib/lapack/liblapack.so.3gf to provide /usr/lib/liblapack.so.3gf (liblapack.so.3gf) in auto mode.
-Setting up liblapack-dev (3.3.0-4) ...
+Setting up liblapack-dev (3.3.1-1) ...
update-alternatives: using /usr/lib/lapack/liblapack.so to provide /usr/lib/liblapack.so (liblapack.so) in auto mode.
-Setting up libncurses5-dev (5.9-1) ...
+Setting up libtinfo-dev (5.9-2) ...
+Setting up libncurses5-dev (5.9-2) ...
Setting up libpaper1 (1.1.24+nmu1) ...
Creating config file /etc/papersize with new version
Setting up libpaper-utils (1.1.24+nmu1) ...
-Setting up libpcrecpp0 (8.12-3) ...
-Setting up libpcre3-dev (8.12-3) ...
+Setting up libpcre3-dev (8.12-4) ...
Setting up zlib1g-dev (1:1.2.3.4.dfsg-3) ...
Setting up libpng12-dev (1.2.46-3) ...
-Setting up libreadline6-dev (6.2-2) ...
-Setting up libreadline-dev (6.2-2) ...
-Setting up libtiff4 (3.9.5-1) ...
-Setting up libxss1 (1:1.2.1-1) ...
+Setting up libreadline6-dev (6.2-7) ...
+Setting up libreadline-dev (6.2-7) ...
Setting up zip (3.0-4) ...
Setting up unzip (6.0-5) ...
Setting up xdg-utils (1.1.0~rc1-2) ...
@@ -438,20 +452,20 @@ Setting up tcl8.5 (8.5.10-1) ...
update-alternatives: using /usr/bin/tclsh8.5 to provide /usr/bin/tclsh (tclsh) in auto mode.
Setting up tk8.5 (8.5.10-1) ...
update-alternatives: using /usr/bin/wish8.5 to provide /usr/bin/wish (wish) in auto mode.
-Setting up r-base-core (2.13.1-1) ...
+Setting up r-base-core (2.14.0-1) ...
Setting R_PAPERSIZE_USER default to 'a4'
Creating config file /etc/R/Renviron with new version
-Setting up r-base-dev (2.13.1-1) ...
+Setting up r-base-dev (2.14.0-1) ...
Removing negative dependencies:
Reading package lists...
Building dependency tree...
Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 5 not upgraded.
+0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded.
Checking correctness of dependencies...
Kernel: GNU/kFreeBSD 8.1-1-amd64 kfreebsd-amd64 (x86_64)
-Toolchain package versions: binutils_2.21.53.20110729-1 dpkg-dev_1.16.0.3 g++-4.6_4.6.1-4 gcc-4.6_4.6.1-4 kfreebsd-kernel-headers_0.56 libc0.1-dev_2.13-13 libstdc++6_4.6.1-4 libstdc++6-4.6-dev_4.6.1-4
-Package versions: apt_0.8.15.5 base-files_6.5 base-passwd_3.5.23 bash_4.1-3 binutils_2.21.53.20110729-1 bsdmainutils_8.2.3 bsdutils_1:2.19.1-4 build-essential_11.5 bzip2_1.0.5-6 cdbs_0.4.96 coreutils_8.5-1 cpp_4:4.6.1-2 cpp-4.6_4.6.1-4 dash_0.5.5.1-7.4 debconf_1.5.41 debfoster_2.7-1.1 debhelper_8.9.3 debian-archive-keyring_2010.08.28 debianutils_4.0.2 diffutils_1:3.0-1 dpatch_2.0.31 dpkg_1.16.0.3 dpkg-dev_1.16.0.3 e2fslibs_1.42~WIP-2011-07-02-1 e2fsprogs_1.42~WIP-2011-07-02-1 fakeroot_1.16-1 file_5.04-5+b1 findutils_4.4.2-1 fontconfig_2.8.0-3 fontconfig-config_2.8.0-3 freebsd-utils_8.2+ds2-5 g++_4:4.6.1-2 g++-4.6_4.6.1-4 gcc_4:4.6.1-2 gcc-4.4-base_4.4.6-7 gcc-4.5-base_4.5.3-4 gcc-4.6_4.6.1-4 gcc-4.6-base_4.6.1-4 gettext_0.18.1.1-3 gettext-base_0.18.1.1-3 gfortran_4:4.6.1-2 gfortran-4.6_4.6.1-4 gnupg_1.4.11-3 gpgv_1.4.11-3 grep_2.9-1 groff-base_1.21-6 gzip_1.4-1 hostname_3.06 html2text_1.3.2a-15 initscripts_2.88dsf-13.11 insserv_1.14.0-2.1 intltool-debian_0.35.0+20060710.1 kfreebsd-kernel-headers_0.56 libacl1_2.2.51-3 libattr1_1:2.4.46-3 libblas-dev_1.2-8 libblas3gf_1.2-8 libblkid1_2.19.1-4 libbsd0_0.3.0-1 libbz2-1.0_1.0.5-6 libbz2-dev_1.0.5-6 libc-bin_2.13-13 libc-dev-bin_2.13-13 libc0.1_2.13-13 libc0.1-dev_2.13-13 libcairo2_1.10.2-6.1 libcam0_8.2+ds1-3 libcloog-ppl0_0.15.9-3 libcomerr2_1.42~WIP-2011-07-02-1 libcroco3_0.6.2-1 libdatrie1_0.2.4-3 libdb5.1_5.1.25-11 libdpkg-perl_1.16.0.3 libexpat1_2.0.1-7 libfontconfig1_2.8.0-3 libfreetype6_2.4.4-2 libgc1c2_1:7.1-8 libgcc1_1:4.6.1-4 libgcrypt11_1.4.6-8 libgdbm3_1.8.3-10 libgeom1_8.2+ds1-3 libgfortran3_4.6.1-4 libglib2.0-0_2.28.6-1 libgmp10_2:5.0.1+dfsg-7 libgmpxx4ldbl_2:5.0.1+dfsg-7 libgnutls26_2.10.5-3 libgomp1_4.6.1-4 libgpg-error0_1.10-0.3 libgssglue1_0.3-2 libice6_2:1.0.7-2 libjail1_8.2+ds1-3 libjpeg62_6b1-2 libjpeg8_8c-2 libjpeg8-dev_8c-2 libkiconv4_8.2+ds1-3 libkvm0_8.2+ds1-3 liblapack-dev_3.3.0-4 liblapack3gf_3.3.0-4 libldap-2.4-2_2.4.25-1.1 liblzma2_5.0.0-2 libmagic1_5.04-5+b1 libmpc2_0.9-3 libmpfr4_3.0.1-5 libncurses5_5.9-1 libncurses5-dev_5.9-1 libncursesw5_5.9-1 libpam-modules_1.1.3-2 libpam-modules-bin_1.1.3-2 libpam-runtime_1.1.3-2 libpam0g_1.1.3-2 libpango1.0-0_1.28.4-2 libpaper-utils_1.1.24+nmu1 libpaper1_1.1.24+nmu1 libpcre3_8.12-3 libpcre3-dev_8.12-3 libpcrecpp0_8.12-3 libpipeline1_1.2.0-3 libpixman-1-0_0.22.2-1 libpng12-0_1.2.46-3 libpng12-dev_1.2.46-3 libppl-c4_0.11.2-4 libppl9_0.11.2-4 libpwl5_0.11.2-4 libquadmath0_4.6.1-4 libreadline-dev_6.2-2 libreadline6_6.2-2 libreadline6-dev_6.2-2 libsasl2-2_2.1.24~rc1.dfsg1+cvs2011-05-23-4 libsbuf0_8.2+ds1-3 libslang2_2.2.4-2 libsm6_2:1.2.0-2 libss2_1.42~WIP-2011-07-02-1 libstdc++6_4.6.1-4 libstdc++6-4.6-dev_4.6.1-4 libtasn1-3_2.9-4 libthai-data_0.1.15-2 libthai0_0.1.15-2 libtiff4_3.9.5-1 libtimedate-perl_1.2000-1 libtirpc1_0.2.2-5 libunistring0_0.9.3-4 libusb-0.1-4_2:0.1.12-18 libuuid1_2.19.1-4 libx11-6_2:1.4.4-1 libx11-data_2:1.4.4-1 libxau6_1:1.0.6-3 libxcb-render0_1.7-3 libxcb-shm0_1.7-3 libxcb1_1.7-3 libxdmcp6_1:1.1.0-3 libxext6_2:1.3.0-3 libxft2_2.2.0-3 libxml2_2.7.8.dfsg-4 libxrender1_1:0.9.6-2 libxss1_1:1.2.1-1 libxt6_1:1.1.1-2 login_1:4.1.4.2+svn3283-3 lsb-base_3.2-27 lzma_4.43-14 make_3.81-8.1 man-db_2.6.0.2-2 mawk_1.3.3-15 multiarch-support_2.13-13 ncurses-base_5.9-1 ncurses-bin_5.9-1 passwd_1:4.1.4.2+svn3283-3 patch_2.6.1-2 perl_5.12.4-2 perl-base_5.12.4-2 perl-modules_5.12.4-2 po-debconf_1.0.16+nmu1 procps_1:3.2.8-11 r-base-core_2.13.1-1 r-base-dev_2.13.1-1 readline-common_6.2-2 sed_4.2.1-9 sensible-utils_0.0.6 sysv-rc_2.88dsf-13.11 sysvinit_2.88dsf-13.11 sysvinit-utils_2.88dsf-13.11 tar_1.25-3 tcl8.5_8.5.10-1 tk8.5_8.5.10-1 ttf-dejavu-core_2.33-1 type-handling_0.2.23 tzdata_2011h-3 ucf_3.0025+nmu2 unzip_6.0-5 util-linux_2.19.1-4 x11-common_1:7.6+7 xdg-utils_1.1.0~rc1-2 xz-utils_5.0.0-2 zip_3.0-4 zlib1g_1:1.2.3.4.dfsg-3 zlib1g-dev_1:1.2.3.4.dfsg-3
+Toolchain package versions: binutils_2.21.90.20111025-1 dpkg-dev_1.16.1.1 g++-4.6_4.6.1-15 gcc-4.6_4.6.1-15 kfreebsd-kernel-headers_0.57 libc0.1-dev_2.13-21 libstdc++6_4.6.1-15 libstdc++6-4.6-dev_4.6.1-15
+Package versions: apt_0.8.15.9 base-files_6.5 base-passwd_3.5.23 bash_4.1-3 binutils_2.21.90.20111025-1 bsdmainutils_8.2.3 bsdutils_1:2.19.1-5 build-essential_11.5 bzip2_1.0.5-7 cdbs_0.4.99 coreutils_8.13-3 cpio_2.11-7 cpp_4:4.6.1-3 cpp-4.6_4.6.1-15 dash_0.5.7-2 debconf_1.5.41 debfoster_2.7-1.1 debhelper_8.9.8 debian-archive-keyring_2010.08.28 debianutils_4.0.4 diffutils_1:3.2-1 dpatch_2.0.33 dpkg_1.16.1.1 dpkg-dev_1.16.1.1 e2fslibs_1.42~WIP-2011-10-16-1 e2fsprogs_1.42~WIP-2011-10-16-1 fakeroot_1.18.1-1 file_5.09-2 findutils_4.4.2-1 fontconfig_2.8.0-3 fontconfig-config_2.8.0-3 freebsd-utils_8.2+ds2-5 g++_4:4.6.1-3 g++-4.6_4.6.1-15 gawk_1:3.1.8+dfsg-0.1 gcc_4:4.6.1-3 gcc-4.2-base_4.2.4-6 gcc-4.4-base_4.4.6-11 gcc-4.6_4.6.1-15 gcc-4.6-base_4.6.1-15 gettext_0.18.1.1-5 gettext-base_0.18.1.1-5 gfortran_4:4.6.1-3 gfortran-4.6_4.6.1-15 gnupg_1.4.11-3 gpgv_1.4.11-3 grep_2.9-2 groff-base_1.21-6 gzip_1.4-1 hostname_3.06 html2text_1.3.2a-15 initscripts_2.88dsf-13.12 insserv_1.14.0-2.1 intltool-debian_0.35.0+20060710.1 kfreebsd-kernel-headers_0.57 libacl1_2.2.51-3 libattr1_1:2.4.46-3 libblas-dev_1.2.20110419-2 libblas3gf_1.2.20110419-2 libblkid1_2.19.1-5 libbsd0_0.3.0-1 libbz2-1.0_1.0.5-7 libbz2-dev_1.0.5-7 libc-bin_2.13-21 libc-dev-bin_2.13-21 libc0.1_2.13-21 libc0.1-dev_2.13-21 libcairo2_1.10.2-6.1 libcam0_8.2+ds1-4 libcomerr2_1.42~WIP-2011-10-16-1 libcroco3_0.6.2-2 libdatrie1_0.2.4-3 libdb5.1_5.1.25-11 libdpkg-perl_1.16.1.1 libexpat1_2.0.1-7.1 libfontconfig1_2.8.0-3 libfreetype6_2.4.7-2 libgc1c2_1:7.1-8 libgcc1_1:4.6.1-15 libgdbm3_1.8.3-10 libgeom1_8.2+ds1-4 libgfortran3_4.6.1-15 libglib2.0-0_2.28.8-1 libgmp10_2:5.0.2+dfsg-2 libgomp1_4.6.1-15 libgssglue1_0.3-3.1 libice6_2:1.0.7-2 libjail1_8.2+ds1-4 libjpeg8_8c-2 libjpeg8-dev_8c-2 libkiconv4_8.2+ds1-4 libkvm0_8.2+ds1-4 liblapack-dev_3.3.1-1 liblapack3gf_3.3.1-1 liblzma5_5.1.1alpha+20110809-3 libmagic1_5.09-2 libmpc2_0.9-4 libmpfr4_3.1.0-2 libncurses5_5.9-2 libncurses5-dev_5.9-2 libncursesw5_5.9-2 libpam-modules_1.1.3-5 libpam-modules-bin_1.1.3-5 libpam-runtime_1.1.3-5 libpam0g_1.1.3-5 libpango1.0-0_1.29.4-2 libpaper-utils_1.1.24+nmu1 libpaper1_1.1.24+nmu1 libpcre3_8.12-4 libpcre3-dev_8.12-4 libpcrecpp0_8.12-4 libpipeline1_1.2.0-4 libpixman-1-0_0.23.8-1 libpng12-0_1.2.46-3 libpng12-dev_1.2.46-3 libquadmath0_4.6.1-15 libreadline-dev_6.2-7 libreadline6_6.2-7 libreadline6-dev_6.2-7 libsbuf0_8.2+ds1-4 libsigsegv2_2.9-4 libslang2_2.2.4-3 libsm6_2:1.2.0-2 libss2_1.42~WIP-2011-10-16-1 libstdc++6_4.6.1-15 libstdc++6-4.6-dev_4.6.1-15 libthai-data_0.1.15-2 libthai0_0.1.15-2 libtiff4_3.9.5-2 libtimedate-perl_1.2000-1 libtinfo-dev_5.9-2 libtinfo5_5.9-2 libtirpc1_0.2.2-5 libunistring0_0.9.3-5 libusb-0.1-4_2:0.1.12-19 libuuid1_2.19.1-5 libx11-6_2:1.4.4-2 libx11-data_2:1.4.4-2 libxau6_1:1.0.6-3 libxcb-render0_1.7-3 libxcb-shm0_1.7-3 libxcb1_1.7-3 libxdmcp6_1:1.1.0-3 libxext6_2:1.3.0-3 libxft2_2.2.0-3 libxml2_2.7.8.dfsg-5 libxrender1_1:0.9.6-2 libxss1_1:1.2.1-2 libxt6_1:1.1.1-2 login_1:4.1.4.2+svn3283-3 lsb-base_3.2-28 lzma_4.43-14 make_3.81-8.1 man-db_2.6.0.2-2 mawk_1.3.3-16 multiarch-support_2.13-21 ncurses-base_5.9-2 ncurses-bin_5.9-2 passwd_1:4.1.4.2+svn3283-3 patch_2.6.1-2 perl_5.12.4-6 perl-base_5.12.4-6 perl-modules_5.12.4-6 po-debconf_1.0.16+nmu1 procps_1:3.2.8-11 psmisc_22.13-1 r-base-core_2.14.0-1 r-base-dev_2.14.0-1 readline-common_6.2-7 sed_4.2.1-9 sensible-utils_0.0.6 sudo_1.8.3p1-1 sysv-rc_2.88dsf-13.12 sysvinit_2.88dsf-13.12 sysvinit-utils_2.88dsf-13.12 tar_1.25-3 tcl8.5_8.5.10-1 tk8.5_8.5.10-1 ttf-dejavu-core_2.33-2 type-handling_0.2.23 tzdata_2011m-1 ucf_3.0025+nmu2 unzip_6.0-5 util-linux_2.19.1-5 x11-common_1:7.6+9 xdg-utils_1.1.0~rc1-2 xz-utils_5.1.1alpha+20110809-3 zip_3.0-4 zlib1g_1:1.2.3.4.dfsg-3 zlib1g-dev_1:1.2.3.4.dfsg-3
┌──────────────────────────────────────────────────────────────────────────────┐
│ Build │
@@ -462,12 +476,12 @@ Unpack source
─────────────
gpgv: keyblock resource `/home/buildd/.gnupg/trustedkeys.gpg': file open error
-gpgv: Signature made Thu Aug 4 00:12:34 2011 UTC using RSA key ID 2295D502
+gpgv: Signature made Wed Nov 2 05:31:37 2011 UTC using RSA key ID 2295D502
gpgv: Can't check signature: public key not found
-dpkg-source: warning: failed to verify signature on ./r-bioc-biobase_2.12.2-1.dsc
-dpkg-source: info: extracting r-bioc-biobase in r-bioc-biobase-2.12.2
-dpkg-source: info: unpacking r-bioc-biobase_2.12.2.orig.tar.gz
-dpkg-source: info: applying r-bioc-biobase_2.12.2-1.diff.gz
+dpkg-source: warning: failed to verify signature on ./r-bioc-biobase_2.14.0-1.dsc
+dpkg-source: info: extracting r-bioc-biobase in r-bioc-biobase-2.14.0
+dpkg-source: info: unpacking r-bioc-biobase_2.14.0.orig.tar.gz
+dpkg-source: info: applying r-bioc-biobase_2.14.0-1.diff.gz
Check disc space
────────────────
@@ -476,24 +490,19 @@ Check disc space
dpkg-buildpackage
─────────────────
-dpkg-buildpackage: export CFLAGS from dpkg-buildflags (origin: vendor): -g -O2
-dpkg-buildpackage: export CPPFLAGS from dpkg-buildflags (origin: vendor):
-dpkg-buildpackage: export CXXFLAGS from dpkg-buildflags (origin: vendor): -g -O2
-dpkg-buildpackage: export FFLAGS from dpkg-buildflags (origin: vendor): -g -O2
-dpkg-buildpackage: export LDFLAGS from dpkg-buildflags (origin: vendor):
dpkg-buildpackage: source package r-bioc-biobase
-dpkg-buildpackage: source version 2.12.2-1
- dpkg-source --before-build r-bioc-biobase-2.12.2
+dpkg-buildpackage: source version 2.14.0-1
+ dpkg-source --before-build r-bioc-biobase-2.14.0
dpkg-buildpackage: host architecture kfreebsd-amd64
fakeroot debian/rules clean
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
test -x debian/rules
dh_testroot
/usr/bin/make -f debian/rules reverse-config
-/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
-make[1]: Entering directory `/build/buildd-r-bioc-biobase_2.12.2-1-kfreebsd-amd64-Mq3Wf3/r-bioc-biobase-2.12.2'
+/usr/share/cdbs/1/rules/simple-patchsys.mk:31: make[1]: Entering directory `/build/buildd-r-bioc-biobase_2.14.0-1-kfreebsd-amd64-UHuASF/r-bioc-biobase-2.14.0'
+WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
make[1]: Nothing to be done for `reverse-config'.
-make[1]: Leaving directory `/build/buildd-r-bioc-biobase_2.12.2-1-kfreebsd-amd64-Mq3Wf3/r-bioc-biobase-2.12.2'
+make[1]: Leaving directory `/build/buildd-r-bioc-biobase_2.14.0-1-kfreebsd-amd64-UHuASF/r-bioc-biobase-2.14.0'
if [ "reverse-patches" = "reverse-patches" ]; then rm -f debian/stamp-patched; fi
patches:
if [ "reverse-patches" != "reverse-patches" ]; then touch debian/stamp-patched; fi
@@ -513,21 +522,22 @@ rm -f config.log config.status
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
test -x debian/rules
mkdir -p "."
+/usr/share/cdbs/1/rules/buildcore.mk:109: WARNING: DEB_DH_BUILDDEB_ARGS is a deprecated variable
/usr/bin/make -f debian/rules reverse-config
-/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
-make[1]: Entering directory `/build/buildd-r-bioc-biobase_2.12.2-1-kfreebsd-amd64-Mq3Wf3/r-bioc-biobase-2.12.2'
+/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) insteadmake[1]: Entering directory `/build/buildd-r-bioc-biobase_2.14.0-1-kfreebsd-amd64-UHuASF/r-bioc-biobase-2.14.0'
+
make[1]: Nothing to be done for `reverse-config'.
-make[1]: Leaving directory `/build/buildd-r-bioc-biobase_2.12.2-1-kfreebsd-amd64-Mq3Wf3/r-bioc-biobase-2.12.2'
+make[1]: Leaving directory `/build/buildd-r-bioc-biobase_2.14.0-1-kfreebsd-amd64-UHuASF/r-bioc-biobase-2.14.0'
if [ "debian/stamp-patched" = "reverse-patches" ]; then rm -f debian/stamp-patched; fi
patches:
if [ "debian/stamp-patched" != "reverse-patches" ]; then touch debian/stamp-patched; fi
if [ "debian/stamp-patched" != "reverse-patches" ] ; then \
/usr/bin/make -f debian/rules update-config ; \
fi
-/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
-make[1]: Entering directory `/build/buildd-r-bioc-biobase_2.12.2-1-kfreebsd-amd64-Mq3Wf3/r-bioc-biobase-2.12.2'
+/usr/share/cdbs/1/rules/simple-patchsys.mk:31: make[1]: Entering directory `/build/buildd-r-bioc-biobase_2.14.0-1-kfreebsd-amd64-UHuASF/r-bioc-biobase-2.14.0'
+WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
make[1]: Nothing to be done for `update-config'.
-make[1]: Leaving directory `/build/buildd-r-bioc-biobase_2.12.2-1-kfreebsd-amd64-Mq3Wf3/r-bioc-biobase-2.12.2'
+make[1]: Leaving directory `/build/buildd-r-bioc-biobase_2.14.0-1-kfreebsd-amd64-UHuASF/r-bioc-biobase-2.14.0'
fakeroot debian/rules binary-arch
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
test -x debian/rules
@@ -535,29 +545,30 @@ dh_testroot
dh_prep
dh_installdirs -A
mkdir -p "."
+/usr/share/cdbs/1/rules/buildcore.mk:109: WARNING: DEB_DH_BUILDDEB_ARGS is a deprecated variable
dh_installdirs usr/lib/R/site-library
if test -f /usr/bin/xvfb-run; then \
xvfb-run -a \
- R CMD INSTALL -l /build/buildd-r-bioc-biobase_2.12.2-1-kfreebsd-amd64-Mq3Wf3/r-bioc-biobase-2.12.2/debian/r-bioc-biobase/usr/lib/R/site-library --clean \
+ R CMD INSTALL -l /build/buildd-r-bioc-biobase_2.14.0-1-kfreebsd-amd64-UHuASF/r-bioc-biobase-2.14.0/debian/r-bioc-biobase/usr/lib/R/site-library --clean \
. ; \
else \
- R CMD INSTALL -l /build/buildd-r-bioc-biobase_2.12.2-1-kfreebsd-amd64-Mq3Wf3/r-bioc-biobase-2.12.2/debian/r-bioc-biobase/usr/lib/R/site-library \
+ R CMD INSTALL -l /build/buildd-r-bioc-biobase_2.14.0-1-kfreebsd-amd64-UHuASF/r-bioc-biobase-2.14.0/debian/r-bioc-biobase/usr/lib/R/site-library \
--clean . ;\
fi
* installing *source* package 'Biobase' ...
** libs
-make[1]: Entering directory `/build/buildd-r-bioc-biobase_2.12.2-1-kfreebsd-amd64-Mq3Wf3/r-bioc-biobase-2.12.2/src'
-gcc -I/usr/share/R/include -fpic -std=gnu99 -O3 -pipe -g -c Rinit.c -o Rinit.o
-gcc -I/usr/share/R/include -fpic -std=gnu99 -O3 -pipe -g -c anyMissing.c -o anyMissing.o
-gcc -I/usr/share/R/include -fpic -std=gnu99 -O3 -pipe -g -c envir.c -o envir.o
-gcc -I/usr/share/R/include -fpic -std=gnu99 -O3 -pipe -g -c matchpt.c -o matchpt.o
-gcc -I/usr/share/R/include -fpic -std=gnu99 -O3 -pipe -g -c rowMedians.c -o rowMedians.o
-gcc -I/usr/share/R/include -fpic -std=gnu99 -O3 -pipe -g -c sublist_extract.c -o sublist_extract.o
-gcc -shared -o Biobase.so Rinit.o anyMissing.o envir.o matchpt.o rowMedians.o sublist_extract.o -L/usr/lib/R/lib -lR
-make[1]: Leaving directory `/build/buildd-r-bioc-biobase_2.12.2-1-kfreebsd-amd64-Mq3Wf3/r-bioc-biobase-2.12.2/src'
-make[1]: Entering directory `/build/buildd-r-bioc-biobase_2.12.2-1-kfreebsd-amd64-Mq3Wf3/r-bioc-biobase-2.12.2/src'
-make[1]: Leaving directory `/build/buildd-r-bioc-biobase_2.12.2-1-kfreebsd-amd64-Mq3Wf3/r-bioc-biobase-2.12.2/src'
-installing to /build/buildd-r-bioc-biobase_2.12.2-1-kfreebsd-amd64-Mq3Wf3/r-bioc-biobase-2.12.2/debian/r-bioc-biobase/usr/lib/R/site-library/Biobase/libs
+make[1]: Entering directory `/build/buildd-r-bioc-biobase_2.14.0-1-kfreebsd-amd64-UHuASF/r-bioc-biobase-2.14.0/src'
+gcc -std=gnu99 -I/usr/share/R/include -fpic -O3 -pipe -g -c Rinit.c -o Rinit.o
+gcc -std=gnu99 -I/usr/share/R/include -fpic -O3 -pipe -g -c anyMissing.c -o anyMissing.o
+gcc -std=gnu99 -I/usr/share/R/include -fpic -O3 -pipe -g -c envir.c -o envir.o
+gcc -std=gnu99 -I/usr/share/R/include -fpic -O3 -pipe -g -c matchpt.c -o matchpt.o
+gcc -std=gnu99 -I/usr/share/R/include -fpic -O3 -pipe -g -c rowMedians.c -o rowMedians.o
+gcc -std=gnu99 -I/usr/share/R/include -fpic -O3 -pipe -g -c sublist_extract.c -o sublist_extract.o
+gcc -std=gnu99 -shared -o Biobase.so Rinit.o anyMissing.o envir.o matchpt.o rowMedians.o sublist_extract.o -L/usr/lib/R/lib -lR
+make[1]: Leaving directory `/build/buildd-r-bioc-biobase_2.14.0-1-kfreebsd-amd64-UHuASF/r-bioc-biobase-2.14.0/src'
+make[1]: Entering directory `/build/buildd-r-bioc-biobase_2.14.0-1-kfreebsd-amd64-UHuASF/r-bioc-biobase-2.14.0/src'
+make[1]: Leaving directory `/build/buildd-r-bioc-biobase_2.14.0-1-kfreebsd-amd64-UHuASF/r-bioc-biobase-2.14.0/src'
+installing to /build/buildd-r-bioc-biobase_2.14.0-1-kfreebsd-amd64-UHuASF/r-bioc-biobase-2.14.0/debian/r-bioc-biobase/usr/lib/R/site-library/Biobase/libs
** R
** data
** inst
@@ -565,20 +576,27 @@ installing to /build/buildd-r-bioc-biobase_2.12.2-1-kfreebsd-amd64-Mq3Wf3/r-bioc
** help
*** installing help indices
** building package indices ...
+*** tangling vignette sources ...
+ 'BiobaseDevelopment.Rnw'
+ 'Bioconductor.Rnw'
+ 'ExpressionSetIntroduction.Rnw'
+ 'HowTo.Rnw'
+ 'Qviews.Rnw'
+ 'esApply.Rnw'
** testing if installed package can be loaded
* DONE (Biobase)
-rm -vf /build/buildd-r-bioc-biobase_2.12.2-1-kfreebsd-amd64-Mq3Wf3/r-bioc-biobase-2.12.2/debian/r-bioc-biobase/usr/lib/R/site-library/R.css \
- /build/buildd-r-bioc-biobase_2.12.2-1-kfreebsd-amd64-Mq3Wf3/r-bioc-biobase-2.12.2/debian/r-bioc-biobase/usr/lib/R/site-library/Biobase/COPYING \
- /build/buildd-r-bioc-biobase_2.12.2-1-kfreebsd-amd64-Mq3Wf3/r-bioc-biobase-2.12.2/debian/r-bioc-biobase/usr/lib/R/site-library/Biobase/LICENSE.txt
+rm -vf /build/buildd-r-bioc-biobase_2.14.0-1-kfreebsd-amd64-UHuASF/r-bioc-biobase-2.14.0/debian/r-bioc-biobase/usr/lib/R/site-library/R.css \
+ /build/buildd-r-bioc-biobase_2.14.0-1-kfreebsd-amd64-UHuASF/r-bioc-biobase-2.14.0/debian/r-bioc-biobase/usr/lib/R/site-library/Biobase/COPYING \
+ /build/buildd-r-bioc-biobase_2.14.0-1-kfreebsd-amd64-UHuASF/r-bioc-biobase-2.14.0/debian/r-bioc-biobase/usr/lib/R/site-library/Biobase/LICENSE.txt
if test -f debian/overrides; then \
- install -d /build/buildd-r-bioc-biobase_2.12.2-1-kfreebsd-amd64-Mq3Wf3/r-bioc-biobase-2.12.2/debian/r-bioc-biobase/usr/share/lintian/overrides ; \
+ install -d /build/buildd-r-bioc-biobase_2.14.0-1-kfreebsd-amd64-UHuASF/r-bioc-biobase-2.14.0/debian/r-bioc-biobase/usr/share/lintian/overrides ; \
install -m 0644 debian/overrides \
- /build/buildd-r-bioc-biobase_2.12.2-1-kfreebsd-amd64-Mq3Wf3/r-bioc-biobase-2.12.2/debian/r-bioc-biobase/usr/share/lintian/overrides/r-bioc-biobase; \
+ /build/buildd-r-bioc-biobase_2.14.0-1-kfreebsd-amd64-UHuASF/r-bioc-biobase-2.14.0/debian/r-bioc-biobase/usr/share/lintian/overrides/r-bioc-biobase; \
fi
Adding cdbs dependencies to debian/r-bioc-biobase.substvars
dh_installdirs -pr-bioc-biobase
-echo "R:Depends=r-base-core (>= 2.13.1~)" >> debian/r-bioc-biobase.substvars
+echo "R:Depends=r-base-core (>= 2.14.0~)" >> debian/r-bioc-biobase.substvars
dh_installdocs -pr-bioc-biobase ./NEWS
dh_installexamples -pr-bioc-biobase
dh_installman -pr-bioc-biobase
@@ -609,58 +627,62 @@ dh_perl -pr-bioc-biobase
dh_shlibdeps -pr-bioc-biobase
dh_gencontrol -pr-bioc-biobase
dh_md5sums -pr-bioc-biobase
-dh_builddeb -pr-bioc-biobase
-dpkg-deb: building package `r-bioc-biobase' in `../r-bioc-biobase_2.12.2-1_kfreebsd-amd64.deb'.
- dpkg-genchanges -B -mkfreebsd-amd64 Build Daemon (fasch) <buildd_kfreebsd-amd64-fasch at buildd.debian.org> >../r-bioc-biobase_2.12.2-1_kfreebsd-amd64.changes
+dh_builddeb -pr-bioc-biobase -- -Z xz
+dpkg-deb: building package `r-bioc-biobase' in `../r-bioc-biobase_2.14.0-1_kfreebsd-amd64.deb'.
+ dpkg-genchanges -B -mkfreebsd-amd64 Build Daemon (fano) <buildd_kfreebsd-amd64-fano at buildd.debian.org> >../r-bioc-biobase_2.14.0-1_kfreebsd-amd64.changes
dpkg-genchanges: arch-specific upload - not including arch-independent packages
dpkg-genchanges: binary-only upload - not including any source code
- dpkg-source --after-build r-bioc-biobase-2.12.2
+ dpkg-source --after-build r-bioc-biobase-2.14.0
dpkg-buildpackage: binary only upload (no source included)
────────────────────────────────────────────────────────────────────────────────
-Build finished at 20110804-0029
+Build finished at 20111102-0602
-r-bioc-biobase_2.12.2-1_kfreebsd-amd64.changes:
+r-bioc-biobase_2.14.0-1_kfreebsd-amd64.changes:
Format: 1.8
-Date: Thu, 04 Aug 2011 08:58:03 +0900
+Date: Wed, 02 Nov 2011 13:52:04 +0900
Source: r-bioc-biobase
Binary: r-bioc-biobase
Architecture: kfreebsd-amd64
-Version: 2.12.2-1
+Version: 2.14.0-1
Distribution: sid
Urgency: low
-Maintainer: kfreebsd-amd64 Build Daemon (fasch) <buildd_kfreebsd-amd64-fasch at buildd.debian.org>
+Maintainer: kfreebsd-amd64 Build Daemon (fano) <buildd_kfreebsd-amd64-fano at buildd.debian.org>
Changed-By: Charles Plessy <plessy at debian.org>
Description:
r-bioc-biobase - base functions for Bioconductor
Changes:
- r-bioc-biobase (2.12.2-1) unstable; urgency=low
+ r-bioc-biobase (2.14.0-1) unstable; urgency=low
.
- * New upstream release.
+ [cb6b786] Bioconductor release 2.9.
+ [d70e490] Build-Depend on R >= 2.10 according to DESCRIPTION.
+ [ae99e35] Include 7 digits of the commit id in the changelog entry.
+ [33b5d47] Compress binary package with xz.
Checksums-Sha1:
- c42f8e10ce86b8610d201d477e7b5d2f994690d0 2667032 r-bioc-biobase_2.12.2-1_kfreebsd-amd64.deb
+ 94804febda8765acdbdd0a3c24fa7e91f792e4fa 2318482 r-bioc-biobase_2.14.0-1_kfreebsd-amd64.deb
Checksums-Sha256:
- 6fe3e051a5ae239c36195b9f10dab5ea16afb51653c6227e2e104ea99790d1e6 2667032 r-bioc-biobase_2.12.2-1_kfreebsd-amd64.deb
+ ec28bdc0f6168d528cdeda728c6b012e9a2274f9de6a59fb0787984ae00abf45 2318482 r-bioc-biobase_2.14.0-1_kfreebsd-amd64.deb
Files:
- 7f7ddafadebe024263895ab51caf2c35 2667032 gnu-r optional r-bioc-biobase_2.12.2-1_kfreebsd-amd64.deb
+ 09418de3aeeb247f224b1f6cbffebb3c 2318482 gnu-r optional r-bioc-biobase_2.14.0-1_kfreebsd-amd64.deb
┌──────────────────────────────────────────────────────────────────────────────┐
│ Package contents │
└──────────────────────────────────────────────────────────────────────────────┘
-r-bioc-biobase_2.12.2-1_kfreebsd-amd64.deb
+r-bioc-biobase_2.14.0-1_kfreebsd-amd64.deb
──────────────────────────────────────────
new debian package, version 2.0.
- size 2667032 bytes: control archive= 4949 bytes.
- 1198 bytes, 25 lines control
+ size 2318482 bytes: control archive= 4957 bytes.
+ 1228 bytes, 26 lines control
13314 bytes, 141 lines md5sums
Package: r-bioc-biobase
- Version: 2.12.2-1
+ Version: 2.14.0-1
Architecture: kfreebsd-amd64
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
- Installed-Size: 3596
- Depends: libc0.1 (>= 2.3), r-base-core (>= 2.13.1~)
+ Installed-Size: 2964
+ Pre-Depends: dpkg (>= 1.15.6)
+ Depends: libc0.1 (>= 2.3), r-base-core (>= 2.14.0~)
Section: gnu-r
Priority: optional
Homepage: http://www.bioconductor.org
@@ -681,177 +703,177 @@ r-bioc-biobase_2.12.2-1_kfreebsd-amd64.deb
unofficial auto-generated Bioconductor packages for Debian and Ubuntu systems,
that are prepared by members of the Debian Med team.
-drwxr-xr-x root/root 0 2011-08-04 00:29 ./
-drwxr-xr-x root/root 0 2011-08-04 00:29 ./usr/
-drwxr-xr-x root/root 0 2011-08-04 00:29 ./usr/lib/
-drwxr-xr-x root/root 0 2011-08-04 00:29 ./usr/lib/R/
-drwxr-xr-x root/root 0 2011-08-04 00:29 ./usr/lib/R/site-library/
-drwxr-xr-x root/root 0 2011-08-04 00:29 ./usr/lib/R/site-library/Biobase/
--rw-r--r-- root/root 2870 2011-08-04 00:29 ./usr/lib/R/site-library/Biobase/NAMESPACE
--rw-r--r-- root/root 3988 2011-08-04 00:29 ./usr/lib/R/site-library/Biobase/NEWS
--rw-r--r-- root/root 1264 2011-08-04 00:29 ./usr/lib/R/site-library/Biobase/DESCRIPTION
-drwxr-xr-x root/root 0 2011-08-04 00:29 ./usr/lib/R/site-library/Biobase/Meta/
--rw-r--r-- root/root 1029 2011-08-04 00:29 ./usr/lib/R/site-library/Biobase/Meta/package.rds
--rw-r--r-- root/root 5637 2011-08-04 00:29 ./usr/lib/R/site-library/Biobase/Meta/Rd.rds
--rw-r--r-- root/root 5633 2011-08-04 00:29 ./usr/lib/R/site-library/Biobase/Meta/hsearch.rds
--rw-r--r-- root/root 3431 2011-08-04 00:29 ./usr/lib/R/site-library/Biobase/Meta/links.rds
--rw-r--r-- root/root 324 2011-08-04 00:29 ./usr/lib/R/site-library/Biobase/Meta/data.rds
--rw-r--r-- root/root 475 2011-08-04 00:29 ./usr/lib/R/site-library/Biobase/Meta/vignette.rds
--rw-r--r-- root/root 1359 2011-08-04 00:29 ./usr/lib/R/site-library/Biobase/Meta/nsInfo.rds
-drwxr-xr-x root/root 0 2011-08-04 00:29 ./usr/lib/R/site-library/Biobase/libs/
--rw-r--r-- root/root 22024 2011-08-04 00:29 ./usr/lib/R/site-library/Biobase/libs/Biobase.so
-drwxr-xr-x root/root 0 2011-08-04 00:29 ./usr/lib/R/site-library/Biobase/R/
--rw-r--r-- root/root 384 2011-08-04 00:29 ./usr/lib/R/site-library/Biobase/R/Biobase
--rw-r--r-- root/root 363984 2011-08-04 00:29 ./usr/lib/R/site-library/Biobase/R/Biobase.rdb
--rw-r--r-- root/root 8697 2011-08-04 00:29 ./usr/lib/R/site-library/Biobase/R/Biobase.rdx
-drwxr-xr-x root/root 0 2011-08-04 00:29 ./usr/lib/R/site-library/Biobase/data/
--rw-r--r-- root/root 345999 2011-08-04 00:29 ./usr/lib/R/site-library/Biobase/data/SW.rda
--rw-r--r-- root/root 1556 2011-08-04 00:29 ./usr/lib/R/site-library/Biobase/data/aaMap.R
--rw-r--r-- root/root 501 2011-08-04 00:29 ./usr/lib/R/site-library/Biobase/data/geneCov.R
--rw-r--r-- root/root 435 2011-08-04 00:29 ./usr/lib/R/site-library/Biobase/data/geneCovariate.rda
--rw-r--r-- root/root 125627 2011-08-04 00:29 ./usr/lib/R/site-library/Biobase/data/geneData.R
--rw-r--r-- root/root 2032 2011-08-04 00:29 ./usr/lib/R/site-library/Biobase/data/reporter.rda
--rw-r--r-- root/root 277973 2011-08-04 00:29 ./usr/lib/R/site-library/Biobase/data/sample.ExpressionSet.rda
--rw-r--r-- root/root 25217 2011-08-04 00:29 ./usr/lib/R/site-library/Biobase/data/sample.MultiSet.rda
--rw-r--r-- root/root 107 2011-08-04 00:29 ./usr/lib/R/site-library/Biobase/data/sample.eSet.R
--rw-r--r-- root/root 117 2011-08-04 00:29 ./usr/lib/R/site-library/Biobase/data/sample.exprSet.1.R
--rw-r--r-- root/root 115 2011-08-04 00:29 ./usr/lib/R/site-library/Biobase/data/sample.exprSet.R
--rw-r--r-- root/root 28463 2011-08-04 00:29 ./usr/lib/R/site-library/Biobase/data/seD.rda
-drwxr-xr-x root/root 0 2011-08-04 00:29 ./usr/lib/R/site-library/Biobase/Code/
-drwxr-xr-x root/root 0 2011-08-04 00:29 ./usr/lib/R/site-library/Biobase/Code/R/
--rw-r--r-- root/root 91 2011-08-04 00:29 ./usr/lib/R/site-library/Biobase/Code/R/get at PKGNAME@.R
-drwxr-xr-x root/root 0 2011-08-04 00:29 ./usr/lib/R/site-library/Biobase/Code/man/
--rw-r--r-- root/root 487 2011-08-04 00:29 ./usr/lib/R/site-library/Biobase/Code/man/@PKGNAME at .Rd
--rw-r--r-- root/root 350 2011-08-04 00:29 ./usr/lib/R/site-library/Biobase/Code/man/get at PKGNAME@.Rd
--rw-r--r-- root/root 201 2011-08-04 00:29 ./usr/lib/R/site-library/Biobase/Code/DESCRIPTION
-drwxr-xr-x root/root 0 2011-08-04 00:29 ./usr/lib/R/site-library/Biobase/ExpressionSet/
-drwxr-xr-x root/root 0 2011-08-04 00:29 ./usr/lib/R/site-library/Biobase/ExpressionSet/man/
--rw-r--r-- root/root 180 2011-08-04 00:29 ./usr/lib/R/site-library/Biobase/ExpressionSet/man/@PKGNAME at .Rd
--rw-r--r-- root/root 212 2011-08-04 00:29 ./usr/lib/R/site-library/Biobase/ExpressionSet/DESCRIPTION
-drwxr-xr-x root/root 0 2011-08-04 00:29 ./usr/lib/R/site-library/Biobase/UnitTests/
-drwxr-xr-x root/root 0 2011-08-04 00:29 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/
-drwxr-xr-x root/root 0 2011-08-04 00:29 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/1.8/
--rw-r--r-- root/root 939 2011-08-04 00:29 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/1.8/AnnotatedDataFrame.Rda
--rw-r--r-- root/root 4678 2011-08-04 00:29 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/1.8/ExpressionSet.Rda
--rw-r--r-- root/root 741 2011-08-04 00:29 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/1.8/MIAME.Rda
--rw-r--r-- root/root 4588 2011-08-04 00:29 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/1.8/exprSet.Rda
--rw-r--r-- root/root 943 2011-08-04 00:29 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/1.8/phenoData.Rda
-drwxr-xr-x root/root 0 2011-08-04 00:29 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/2.0/
--rw-r--r-- root/root 1014 2011-08-04 00:29 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/2.0/AnnotatedDataFrame.Rda
--rw-r--r-- root/root 4822 2011-08-04 00:29 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/2.0/ExpressionSet.Rda
--rw-r--r-- root/root 795 2011-08-04 00:29 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/2.0/MIAME.Rda
--rw-r--r-- root/root 555 2011-08-04 00:29 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/2.0/MultiSet.Rda
--rw-r--r-- root/root 113 2011-08-04 00:29 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/2.0/ScalarCharacter.Rda
--rw-r--r-- root/root 609 2011-08-04 00:29 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/2.0/SnpSet.Rda
--rw-r--r-- root/root 143 2011-08-04 00:29 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/2.0/Versioned.Rda
--rw-r--r-- root/root 183 2011-08-04 00:29 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/2.0/VersionedBiobase.Rda
--rw-r--r-- root/root 105 2011-08-04 00:29 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/2.0/Versions.Rda
--rw-r--r-- root/root 110 2011-08-04 00:29 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/2.0/VersionsNull.Rda
--rw-r--r-- root/root 227 2011-08-04 00:29 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/2.0/aggregator.Rda
--rw-r--r-- root/root 146 2011-08-04 00:29 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/2.0/container.Rda
--rw-r--r-- root/root 4705 2011-08-04 00:29 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/2.0/exprSet.Rda
--rw-r--r-- root/root 998 2011-08-04 00:29 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/2.0/phenoData.Rda
-drwxr-xr-x root/root 0 2011-08-04 00:29 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/
--rw-r--r-- root/root 1016 2011-08-04 00:29 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/AnnotatedDataFrame.Rda
--rw-r--r-- root/root 5537 2011-08-04 00:29 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/ExpressionSet.Rda
--rw-r--r-- root/root 795 2011-08-04 00:29 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/MIAME.Rda
--rw-r--r-- root/root 1166 2011-08-04 00:29 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/MultiSet.Rda
--rw-r--r-- root/root 802 2011-08-04 00:29 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/NChannelSet.Rda
--rw-r--r-- root/root 524 2011-08-04 00:29 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/SWPD.rda
--rw-r--r-- root/root 113 2011-08-04 00:29 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/ScalarCharacter.Rda
--rw-r--r-- root/root 1235 2011-08-04 00:29 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/SnpSet.Rda
--rw-r--r-- root/root 143 2011-08-04 00:29 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/Versioned.Rda
--rw-r--r-- root/root 183 2011-08-04 00:29 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/VersionedBiobase.Rda
--rw-r--r-- root/root 105 2011-08-04 00:29 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/Versions.Rda
--rw-r--r-- root/root 112 2011-08-04 00:29 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/VersionsNull.Rda
--rw-r--r-- root/root 231 2011-08-04 00:29 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/aggregator.Rda
--rw-r--r-- root/root 76485 2011-08-04 00:29 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/bbsym.rda
--rw-r--r-- root/root 146 2011-08-04 00:29 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/container.Rda
--rw-r--r-- root/root 62201 2011-08-04 00:29 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/eset.rda
--rw-r--r-- root/root 4704 2011-08-04 00:29 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/exprSet.Rda
--rw-r--r-- root/root 167662 2011-08-04 00:29 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/golubMergeSub.rda
--rw-r--r-- root/root 25005 2011-08-04 00:29 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/sample.eSet.rda
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+-rw-r--r-- root/root 423 2011-11-02 06:02 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/raw/varMetadata.tab
+-rw-r--r-- root/root 10497 2011-11-02 06:02 ./usr/lib/R/site-library/Biobase/UnitTests/AnnotatedDataFrame_test.R
+-rw-r--r-- root/root 2035 2011-11-02 06:02 ./usr/lib/R/site-library/Biobase/UnitTests/AssayData_test.R
+-rw-r--r-- root/root 629 2011-11-02 06:02 ./usr/lib/R/site-library/Biobase/UnitTests/DataClasses_test.R
+-rw-r--r-- root/root 20153 2011-11-02 06:02 ./usr/lib/R/site-library/Biobase/UnitTests/EsetSubclasses_test.R
+-rw-r--r-- root/root 6194 2011-11-02 06:02 ./usr/lib/R/site-library/Biobase/UnitTests/ExpressionSet_test.R
+-rw-r--r-- root/root 318 2011-11-02 06:02 ./usr/lib/R/site-library/Biobase/UnitTests/Makefile
+-rw-r--r-- root/root 8317 2011-11-02 06:02 ./usr/lib/R/site-library/Biobase/UnitTests/NChannelSet_test.R
+-rw-r--r-- root/root 580 2011-11-02 06:02 ./usr/lib/R/site-library/Biobase/UnitTests/SnpSet_test.R
+-rw-r--r-- root/root 8167 2011-11-02 06:02 ./usr/lib/R/site-library/Biobase/UnitTests/UpdateObject_test.R
+-rw-r--r-- root/root 5015 2011-11-02 06:02 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_test.R
+-rw-r--r-- root/root 951 2011-11-02 06:02 ./usr/lib/R/site-library/Biobase/UnitTests/cache_test.R
+-rw-r--r-- root/root 180 2011-11-02 06:02 ./usr/lib/R/site-library/Biobase/UnitTests/checkClass_test.R
+-rw-r--r-- root/root 2522 2011-11-02 06:02 ./usr/lib/R/site-library/Biobase/UnitTests/combine_test.R
+-rw-r--r-- root/root 403 2011-11-02 06:02 ./usr/lib/R/site-library/Biobase/UnitTests/copyEnv_test.R
+-rw-r--r-- root/root 4598 2011-11-02 06:02 ./usr/lib/R/site-library/Biobase/UnitTests/data.frame_test.R
+-rw-r--r-- root/root 2096 2011-11-02 06:02 ./usr/lib/R/site-library/Biobase/UnitTests/esApply_test.R
+-rwxr-xr-x root/root 39 2011-11-02 06:02 ./usr/lib/R/site-library/Biobase/UnitTests/runall.sh
+-rw-r--r-- root/root 1515 2011-11-02 06:02 ./usr/lib/R/site-library/Biobase/UnitTests/matrix_test.R
+-rw-r--r-- root/root 477 2011-11-02 06:02 ./usr/lib/R/site-library/Biobase/UnitTests/runalltests.R
+-rwxr-xr-x root/root 213 2011-11-02 06:02 ./usr/lib/R/site-library/Biobase/UnitTests/runfile.sh
+-rw-r--r-- root/root 1907 2011-11-02 06:02 ./usr/lib/R/site-library/Biobase/UnitTests/subListExtract_test.R
+-rw-r--r-- root/root 2040 2011-11-02 06:02 ./usr/lib/R/site-library/Biobase/UnitTests/unsaveSetSlot_test.R
+-rw-r--r-- root/root 1257 2011-11-02 06:02 ./usr/lib/R/site-library/Biobase/UnitTests/utilities.R
+drwxr-xr-x root/root 0 2011-11-02 06:02 ./usr/lib/R/site-library/Biobase/doc/
+drwxr-xr-x root/root 0 2011-11-02 06:02 ./usr/lib/R/site-library/Biobase/doc/legacy/
+-rw-r--r-- root/root 13630 2011-11-02 06:02 ./usr/lib/R/site-library/Biobase/doc/legacy/Biobase.Rnw
+-rw-r--r-- root/root 28377 2011-11-02 06:02 ./usr/lib/R/site-library/Biobase/doc/BiobaseDevelopment.Rnw
+-rw-r--r-- root/root 246002 2011-11-02 06:02 ./usr/lib/R/site-library/Biobase/doc/BiobaseDevelopment.pdf
+-rw-r--r-- root/root 3067 2011-11-02 06:02 ./usr/lib/R/site-library/Biobase/doc/Bioconductor.Rnw
+-rw-r--r-- root/root 71355 2011-11-02 06:02 ./usr/lib/R/site-library/Biobase/doc/Bioconductor.pdf
+-rw-r--r-- root/root 18062 2011-11-02 06:02 ./usr/lib/R/site-library/Biobase/doc/ExpressionSetIntroduction.Rnw
+-rw-r--r-- root/root 180675 2011-11-02 06:02 ./usr/lib/R/site-library/Biobase/doc/ExpressionSetIntroduction.pdf
+-rw-r--r-- root/root 3048 2011-11-02 06:02 ./usr/lib/R/site-library/Biobase/doc/HowTo.Rnw
+-rw-r--r-- root/root 56138 2011-11-02 06:02 ./usr/lib/R/site-library/Biobase/doc/HowTo.pdf
+-rw-r--r-- root/root 5030 2011-11-02 06:02 ./usr/lib/R/site-library/Biobase/doc/Qviews.Rnw
+-rw-r--r-- root/root 72358 2011-11-02 06:02 ./usr/lib/R/site-library/Biobase/doc/Qviews.pdf
+-rw-r--r-- root/root 3727 2011-11-02 06:02 ./usr/lib/R/site-library/Biobase/doc/esApply.Rnw
+-rw-r--r-- root/root 103681 2011-11-02 06:02 ./usr/lib/R/site-library/Biobase/doc/esApply.pdf
+-rw-r--r-- root/root 8004 2011-11-02 06:02 ./usr/lib/R/site-library/Biobase/doc/BiobaseDevelopment.R
+-rw-r--r-- root/root 220 2011-11-02 06:02 ./usr/lib/R/site-library/Biobase/doc/Bioconductor.R
+-rw-r--r-- root/root 6628 2011-11-02 06:02 ./usr/lib/R/site-library/Biobase/doc/ExpressionSetIntroduction.R
+-rw-r--r-- root/root 206 2011-11-02 06:02 ./usr/lib/R/site-library/Biobase/doc/HowTo.R
+-rw-r--r-- root/root 3987 2011-11-02 06:02 ./usr/lib/R/site-library/Biobase/doc/Qviews.R
+-rw-r--r-- root/root 1591 2011-11-02 06:02 ./usr/lib/R/site-library/Biobase/doc/esApply.R
+-rw-r--r-- root/root 3428 2011-11-02 06:02 ./usr/lib/R/site-library/Biobase/doc/index.html
+drwxr-xr-x root/root 0 2011-11-02 06:02 ./usr/lib/R/site-library/Biobase/extdata/
+-rw-r--r-- root/root 109039 2011-11-02 06:02 ./usr/lib/R/site-library/Biobase/extdata/exprsData.txt
+-rw-r--r-- root/root 715 2011-11-02 06:02 ./usr/lib/R/site-library/Biobase/extdata/pData.txt
+drwxr-xr-x root/root 0 2011-11-02 06:02 ./usr/lib/R/site-library/Biobase/scripts/
+-rw-r--r-- root/root 774 2011-11-02 06:02 ./usr/lib/R/site-library/Biobase/scripts/esetTesting.R
+-rw-r--r-- root/root 5365 2011-11-02 06:02 ./usr/lib/R/site-library/Biobase/scripts/getBioC.R
+-rw-r--r-- root/root 1213 2011-11-02 06:02 ./usr/lib/R/site-library/Biobase/scripts/getBioCHelp
+-rw-r--r-- root/root 1122 2011-11-02 06:02 ./usr/lib/R/site-library/Biobase/scripts/getBioCPkgNames.R
+-rw-r--r-- root/root 2008 2011-11-02 06:02 ./usr/lib/R/site-library/Biobase/scripts/makeExpressionSetPackage.R
+-rw-r--r-- root/root 6808 2011-11-02 06:02 ./usr/lib/R/site-library/Biobase/scripts/query.packages.R
+-rw-r--r-- root/root 650 2011-11-02 06:02 ./usr/lib/R/site-library/Biobase/CITATION
+-rw-r--r-- root/root 516 2011-11-02 06:02 ./usr/lib/R/site-library/Biobase/testClass.R
+drwxr-xr-x root/root 0 2011-11-02 06:02 ./usr/lib/R/site-library/Biobase/help/
+-rw-r--r-- root/root 858 2011-11-02 06:02 ./usr/lib/R/site-library/Biobase/help/paths.rds
+-rw-r--r-- root/root 244721 2011-11-02 06:02 ./usr/lib/R/site-library/Biobase/help/Biobase.rdb
+-rw-r--r-- root/root 2011 2011-11-02 06:02 ./usr/lib/R/site-library/Biobase/help/Biobase.rdx
+-rw-r--r-- root/root 14948 2011-11-02 06:02 ./usr/lib/R/site-library/Biobase/help/AnIndex
+-rw-r--r-- root/root 3457 2011-11-02 06:02 ./usr/lib/R/site-library/Biobase/help/aliases.rds
+drwxr-xr-x root/root 0 2011-11-02 06:02 ./usr/lib/R/site-library/Biobase/html/
+-rw-r--r-- root/root 53325 2011-11-02 06:02 ./usr/lib/R/site-library/Biobase/html/00Index.html
+-rw-r--r-- root/root 1179 2011-11-02 06:02 ./usr/lib/R/site-library/Biobase/html/R.css
+-rw-r--r-- root/root 6718 2011-11-02 06:02 ./usr/lib/R/site-library/Biobase/INDEX
+drwxr-xr-x root/root 0 2011-11-02 06:02 ./usr/share/
+drwxr-xr-x root/root 0 2011-11-02 06:02 ./usr/share/doc/
+drwxr-xr-x root/root 0 2011-11-02 06:02 ./usr/share/doc/r-bioc-biobase/
+-rw-r--r-- root/root 392 2011-11-02 06:02 ./usr/share/doc/r-bioc-biobase/README.Debian
+-rw-r--r-- root/root 10574 2011-11-02 06:02 ./usr/share/doc/r-bioc-biobase/copyright
+-rw-r--r-- root/root 1380 2011-10-31 23:32 ./usr/share/doc/r-bioc-biobase/NEWS.gz
+-rw-r--r-- root/root 380 2011-11-02 06:02 ./usr/share/doc/r-bioc-biobase/changelog.Debian.gz
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -865,31 +887,30 @@ Built successfully
│ Post Build │
└──────────────────────────────────────────────────────────────────────────────┘
-Purging /var/lib/schroot/mount/sid-ka-sbuild-1312417511-77932/build/buildd-r-bioc-biobase_2.12.2-1-kfreebsd-amd64-Mq3Wf3
+Purging /var/lib/schroot/mount/sid-ka-sbuild-1320213604-69038/build/buildd-r-bioc-biobase_2.14.0-1-kfreebsd-amd64-UHuASF
Reading package lists...
Building dependency tree...
Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 5 not upgraded.
+0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded.
Reading package lists...
Building dependency tree...
Reading state information...
The following packages will be REMOVED:
cdbs* debhelper* dpatch* file* fontconfig* fontconfig-config* gettext*
- gettext-base* gfortran* gfortran-4.6* groff-base* html2text*
- intltool-debian* libblas-dev* libblas3gf* libbz2-dev* libcairo2* libcroco3*
- libdatrie1* libfontconfig1* libfreetype6* libgfortran3* libglib2.0-0*
- libice6* libjpeg62* libjpeg8* libjpeg8-dev* liblapack-dev* liblapack3gf*
- libmagic1* libncurses5-dev* libpango1.0-0* libpaper-utils* libpaper1*
- libpcre3* libpcre3-dev* libpcrecpp0* libpipeline1* libpixman-1-0*
- libpng12-dev* libreadline-dev* libreadline6-dev* libsm6* libthai-data*
- libthai0* libtiff4* libunistring0* libx11-6* libx11-data* libxau6*
- libxcb-render0* libxcb-shm0* libxcb1* libxdmcp6* libxext6* libxft2* libxml2*
- libxrender1* libxss1* libxt6* man-db* po-debconf* r-base-core* r-base-dev*
- tcl8.5* tk8.5* ttf-dejavu-core* ucf* unzip* x11-common* xdg-utils* zip*
- zlib1g-dev*
-0 upgraded, 0 newly installed, 73 to remove and 5 not upgraded.
-After this operation, 126 MB disk space will be freed.
-(Reading database ... 16023 files and directories currently installed.)
+ gettext-base* gfortran* gfortran-4.6* html2text* intltool-debian*
+ libblas-dev* libblas3gf* libbz2-dev* libcairo2* libcroco3* libdatrie1*
+ libfontconfig1* libfreetype6* libgfortran3* libglib2.0-0* libice6* libjpeg8*
+ libjpeg8-dev* liblapack-dev* liblapack3gf* libmagic1* libncurses5-dev*
+ libpango1.0-0* libpaper-utils* libpaper1* libpcre3-dev* libpcrecpp0*
+ libpipeline1* libpixman-1-0* libpng12-dev* libreadline-dev*
+ libreadline6-dev* libsm6* libthai-data* libthai0* libtiff4* libtinfo-dev*
+ libunistring0* libx11-6* libx11-data* libxau6* libxcb-render0* libxcb-shm0*
+ libxcb1* libxdmcp6* libxext6* libxft2* libxml2* libxrender1* libxss1*
+ libxt6* man-db* po-debconf* r-base-core* r-base-dev* tcl8.5* tk8.5*
+ ttf-dejavu-core* ucf* unzip* x11-common* xdg-utils* zip* zlib1g-dev*
+0 upgraded, 0 newly installed, 71 to remove and 1 not upgraded.
+After this operation, 120 MB disk space will be freed.
+(Reading database ... 16099 files and directories currently installed.)
Removing r-base-dev ...
Removing cdbs ...
Removing debhelper ...
@@ -918,10 +939,6 @@ Removing gettext ...
Removing gettext-base ...
Removing gfortran ...
Removing gfortran-4.6 ...
-Removing man-db ...
-Purging configuration files for man-db ...
-Removing groff-base ...
-Purging configuration files for groff-base ...
Removing html2text ...
Purging configuration files for html2text ...
Removing liblapack-dev ...
@@ -951,13 +968,10 @@ Removing libice6 ...
Purging configuration files for libice6 ...
Removing libtiff4 ...
Purging configuration files for libtiff4 ...
-Removing libjpeg62 ...
Removing libjpeg8-dev ...
Removing libjpeg8 ...
Removing libmagic1 ...
Purging configuration files for libmagic1 ...
-Removing libreadline-dev ...
-Removing libreadline6-dev ...
Removing libncurses5-dev ...
Removing libpaper-utils ...
Removing libpaper1 ...
@@ -965,14 +979,17 @@ Purging configuration files for libpaper1 ...
Removing libpcre3-dev ...
Removing libpcrecpp0 ...
Purging configuration files for libpcrecpp0 ...
-Removing libpcre3 ...
-Purging configuration files for libpcre3 ...
+Removing man-db ...
+Purging configuration files for man-db ...
Removing libpipeline1 ...
Purging configuration files for libpipeline1 ...
Removing libpixman-1-0 ...
Purging configuration files for libpixman-1-0 ...
Removing libpng12-dev ...
+Removing libreadline-dev ...
+Removing libreadline6-dev ...
Removing libthai-data ...
+Removing libtinfo-dev ...
Removing libunistring0 ...
Purging configuration files for libunistring0 ...
Removing libxss1 ...
@@ -1017,18 +1034,18 @@ Removing zlib1g-dev ...
└──────────────────────────────────────────────────────────────────────────────┘
Architecture: kfreebsd-amd64
-Build-Space: 9490
+Build-Space: 8436
Build-Time: 29
Distribution: sid
-Install-Time: 204
-Job: r-bioc-biobase_2.12.2-1
+Install-Time: 98
+Job: r-bioc-biobase_2.14.0-1
Package: r-bioc-biobase
-Package-Time: 258
-Source-Version: 2.12.2-1
-Space: 9490
+Package-Time: 148
+Source-Version: 2.14.0-1
+Space: 8436
Status: successful
-Version: 2.12.2-1
+Version: 2.14.0-1
────────────────────────────────────────────────────────────────────────────────
-Finished at 20110804-0029
-Build needed 00:04:18, 9490k disc space
-Signature with key '56BAE008' requested:
+Finished at 20111102-0602
+Build needed 00:02:28, 8436k disc space
+Signature with key '911EAB69' requested:
diff --git a/kfreebsd-i386.log b/kfreebsd-i386.log
index cb90c0c..5201246 100644
--- a/kfreebsd-i386.log
+++ b/kfreebsd-i386.log
@@ -1,49 +1,60 @@
-From buildd at finzi.debian.org Thu Aug 04 00:31:18 2011
-Return-path: <buildd at finzi.debian.org>
+From buildd at field.debian.org Wed Nov 02 06:07:23 2011
+Return-path: <buildd at field.debian.org>
Received: from merikanto.debian.org ([2001:858:2:2:216:35ff:fec4:a49a])
from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
CN=merikanto.debian.org,
EMAIL=hostmaster at merikanto.debian.org (verified)
by grieg.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
- (Exim 4.72) (envelope-from <buildd at finzi.debian.org>)
- id 1QolqI-0004mO-Jt
- for logs at buildd.debian.org; Thu, 04 Aug 2011 00:31:18 +0000
-Received: from finzi.debian.org ([206.12.19.111])
+ (Exim 4.72) (envelope-from <buildd at field.debian.org>)
+ id 1RLTyt-00083W-7K
+ for logs at buildd.debian.org; Wed, 02 Nov 2011 06:07:23 +0000
+Received: from field.debian.org ([194.177.211.210])
from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
- CN=finzi.debian.org, EMAIL=hostmaster at finzi.debian.org (verified)
+ CN=field.debian.org, EMAIL=hostmaster at field.debian.org (verified)
by merikanto.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
- (Exim 4.72) (envelope-from <buildd at finzi.debian.org>)
- id 1QolqG-0000Lo-L3; Thu, 04 Aug 2011 00:31:17 +0000
-Received: from buildd by finzi.debian.org with local (Exim 4.72)
- (envelope-from <buildd at finzi.debian.org>)
- id 1QolqE-0000mI-7D; Thu, 04 Aug 2011 00:31:14 +0000
-Message-Id: <E1QolqE-0000mI-7D at finzi.debian.org>
+ (Exim 4.72) (envelope-from <buildd at field.debian.org>)
+ id 1RLTys-0007s7-Do; Wed, 02 Nov 2011 06:07:22 +0000
+Received: from buildd by field.debian.org with local (Exim 4.72)
+ (envelope-from <buildd at field.debian.org>)
+ id 1RLTyr-00077c-MR; Wed, 02 Nov 2011 06:07:21 +0000
+Message-Id: <E1RLTyr-00077c-MR at field.debian.org>
MIME-Version: 1.0
Content-Transfer-Encoding: binary
X-Mailer: MIME::Lite 3.027 (F2.77; B3.08; Q3.08)
-Date: Thu, 4 Aug 2011 00:31:14 +0000
-From: buildd on finzi <buildd at finzi.debian.org>
+Date: Wed, 2 Nov 2011 06:07:21 +0000
+From: buildd on field <buildd at field.debian.org>
To: logs at buildd.debian.org,aurelien at aurel32.net,christoph at debian.org
-Subject: Log for successful build of r-bioc-biobase_2.12.2-1 on kfreebsd-i386
+Subject: Log for successful build of r-bioc-biobase_2.14.0-1 on kfreebsd-i386
(dist=sid)
-Key-Id: C1A6480B
+Key-Id: 6B8016EE
Delivered-To: logs at buildd.debian.org
-sbuild (Debian sbuild) 0.61.0 (23 Feb 2011) on finzi.debian.org
+sbuild (Debian sbuild) 0.61.0 (23 Feb 2011) on field.debian.org
╔══════════════════════════════════════════════════════════════════════════════╗
-║ r-bioc-biobase 2.12.2-1 (kfreebsd-i386) 04 Aug 2011 00:28 ║
+║ r-bioc-biobase 2.14.0-1 (kfreebsd-i386) 02 Nov 2011 06:01 ║
╚══════════════════════════════════════════════════════════════════════════════╝
Package: r-bioc-biobase
-Version: 2.12.2-1
-Source Version: 2.12.2-1
+Version: 2.14.0-1
+Source Version: 2.14.0-1
Architecture: kfreebsd-i386
+Hit http://ftp.gr.debian.org sid InRelease
+Hit http://ftp.gr.debian.org sid/main Sources/DiffIndex
Hit http://incoming.debian.org sid InRelease
Ign http://incoming.debian.org InRelease
+Hit http://ftp.gr.debian.org sid/contrib Sources/DiffIndex
+Hit http://ftp.gr.debian.org sid/non-free Sources/DiffIndex
+Hit http://ftp.gr.debian.org sid/main kfreebsd-i386 Packages/DiffIndex
+Hit http://ftp.gr.debian.org sid/contrib kfreebsd-i386 Packages/DiffIndex
+Hit http://ftp.gr.debian.org sid/non-free kfreebsd-i386 Packages/DiffIndex
+Ign http://ftp.gr.debian.org sid/contrib TranslationIndex
+Hit http://ftp.gr.debian.org sid/main TranslationIndex
+Ign http://ftp.gr.debian.org sid/non-free TranslationIndex
Get:1 http://incoming.debian.org Release.gpg [836 B]
+Ign http://ftp.gr.debian.org sid/contrib Translation-en
+Ign http://ftp.gr.debian.org sid/non-free Translation-en
Hit http://incoming.debian.org sid/main Sources/DiffIndex
-Hit http://mirror-ubc.debian.org sid InRelease
Hit http://incoming.debian.org sid/contrib Sources/DiffIndex
Hit http://incoming.debian.org sid/non-free Sources/DiffIndex
Hit http://incoming.debian.org sid/main kfreebsd-i386 Packages/DiffIndex
@@ -52,26 +63,13 @@ Hit http://incoming.debian.org sid/non-free kfreebsd-i386 Packages/DiffIndex
Ign http://incoming.debian.org sid/contrib TranslationIndex
Hit http://incoming.debian.org sid/main TranslationIndex
Ign http://incoming.debian.org sid/non-free TranslationIndex
-Hit http://mirror-ubc.debian.org sid/main Sources/DiffIndex
Get:2 http://incoming.debian.org Release [1604 B]
-Hit http://incoming.debian.org sid/non-free kfreebsd-i386 Packages
-Hit http://mirror-ubc.debian.org sid/contrib Sources/DiffIndex
-Hit http://mirror-ubc.debian.org sid/non-free Sources/DiffIndex
-Hit http://mirror-ubc.debian.org sid/main kfreebsd-i386 Packages/DiffIndex
-Hit http://mirror-ubc.debian.org sid/contrib kfreebsd-i386 Packages/DiffIndex
-Hit http://mirror-ubc.debian.org sid/non-free kfreebsd-i386 Packages/DiffIndex
-Ign http://mirror-ubc.debian.org sid/contrib TranslationIndex
-Hit http://mirror-ubc.debian.org sid/main TranslationIndex
-Ign http://mirror-ubc.debian.org sid/non-free TranslationIndex
-Hit http://mirror-ubc.debian.org sid/non-free kfreebsd-i386 Packages
-Ign http://mirror-ubc.debian.org sid/contrib Translation-en
-Ign http://mirror-ubc.debian.org sid/non-free Translation-en
-Get:3 http://incoming.debian.org Sources [30.7 kB]
-Get:4 http://incoming.debian.org Packages [218 kB]
+Get:3 http://incoming.debian.org Sources [49.2 kB]
+Get:4 http://incoming.debian.org Packages [352 kB]
Ign http://incoming.debian.org sid/contrib Translation-en
Ign http://incoming.debian.org sid/non-free Translation-en
Ign http://incoming.debian.org Translation-en
-Fetched 251 kB in 5s (49.6 kB/s)
+Fetched 404 kB in 5s (78.6 kB/s)
Reading package lists...
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -92,11 +90,11 @@ Building dependency tree...
Reading state information...
NOTICE: 'r-bioc-biobase' packaging is maintained in the 'Git' version control system at:
git://git.debian.org/git/debian-med/r-bioc-biobase.git
-Need to get 2229 kB of source archives.
-Get:1 http://incoming.debian.org/buildd-unstable/ r-bioc-biobase 2.12.2-1 (dsc) [1944 B]
-Get:2 http://incoming.debian.org/buildd-unstable/ r-bioc-biobase 2.12.2-1 (tar) [2222 kB]
-Get:3 http://incoming.debian.org/buildd-unstable/ r-bioc-biobase 2.12.2-1 (diff) [5417 B]
-Fetched 2229 kB in 2s (1058 kB/s)
+Need to get 1934 kB of source archives.
+Get:1 http://incoming.debian.org/buildd-unstable/ r-bioc-biobase 2.14.0-1 (dsc) [2004 B]
+Get:2 http://incoming.debian.org/buildd-unstable/ r-bioc-biobase 2.14.0-1 (tar) [1926 kB]
+Get:3 http://incoming.debian.org/buildd-unstable/ r-bioc-biobase 2.14.0-1 (diff) [5645 B]
+Fetched 1934 kB in 4s (454 kB/s)
Download complete and in download only mode
Check arch
@@ -110,59 +108,60 @@ Check arch
Build-Depends: build-essential, fakeroot
Checking for already installed dependencies...
build-essential: already installed (11.5)
-fakeroot: already installed (1.16-1)
+fakeroot: already installed (1.18.1-1)
Checking for dependency conflicts...
Installing positive dependencies:
Reading package lists...
Building dependency tree...
Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 5 not upgraded.
+0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded.
Removing negative dependencies:
Reading package lists...
Building dependency tree...
Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 5 not upgraded.
+0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded.
Checking correctness of dependencies...
┌──────────────────────────────────────────────────────────────────────────────┐
│ Install r-bioc-biobase build dependencies (internal resolver) │
└──────────────────────────────────────────────────────────────────────────────┘
-Build-Depends: base-files, base-passwd, bash, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, freebsd-utils, grep, gzip, hostname, ncurses-base, ncurses-bin, perl-base, sed, login, sysvinit-utils, sysvinit, tar, bsdutils, util-linux, libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), cdbs, debhelper (>= 8), r-base-dev
+Build-Depends: base-files, base-passwd, bash, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, freebsd-utils, grep, gzip, hostname, ncurses-base, ncurses-bin, perl-base, sed, login, sysvinit-utils, sysvinit, tar, bsdutils, util-linux, libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), cdbs, debhelper (>= 8), r-base-dev (>= 2.10)
Checking for already installed dependencies...
base-files: already installed (6.5)
base-passwd: already installed (3.5.23)
bash: already installed (4.1-3)
-coreutils: already installed (8.5-1)
-dash: already installed (0.5.5.1-7.4)
-debianutils: already installed (4.0.2)
-diffutils: already installed (1:3.0-1)
-dpkg: already installed (1.16.0.3)
-e2fsprogs: already installed (1.42~WIP-2011-07-02-1)
+coreutils: already installed (8.13-3)
+dash: already installed (0.5.7-2)
+debianutils: already installed (4.0.4)
+diffutils: already installed (1:3.2-1)
+dpkg: already installed (1.16.1.1)
+e2fsprogs: already installed (1.42~WIP-2011-10-16-1)
findutils: already installed (4.4.2-1)
freebsd-utils: already installed (8.2+ds2-5)
-grep: already installed (2.9-1)
+grep: already installed (2.9-2)
gzip: already installed (1.4-1)
hostname: already installed (3.06)
-ncurses-base: already installed (5.9-1)
-ncurses-bin: already installed (5.9-1)
-perl-base: already installed (5.12.4-2)
+ncurses-base: already installed (5.9-2)
+ncurses-bin: already installed (5.9-2)
+perl-base: already installed (5.12.4-6)
sed: already installed (4.2.1-9)
login: already installed (1:4.1.4.2+svn3283-3)
-sysvinit-utils: already installed (2.88dsf-13.11)
-sysvinit: already installed (2.88dsf-13.11)
+sysvinit-utils: already installed (2.88dsf-13.12)
+sysvinit: already installed (2.88dsf-13.12)
tar: already installed (1.25-3)
-bsdutils: already installed (1:2.19.1-4)
-util-linux: already installed (2.19.1-4)
+bsdutils: already installed (1:2.19.1-5)
+util-linux: already installed (2.19.1-5)
libc6-dev: already installed (~*=PROVIDED=*=)
-gcc: already installed (4:4.6.1-2 >= 4:4.4.3 is satisfied)
-g++: already installed (4:4.6.1-2 >= 4:4.4.3 is satisfied)
+gcc: already installed (4:4.6.1-3 >= 4:4.4.3 is satisfied)
+g++: already installed (4:4.6.1-3 >= 4:4.4.3 is satisfied)
make: already installed (3.81-8.1)
-dpkg-dev: already installed (1.16.0.3 >= 1.13.5 is satisfied)
+dpkg-dev: already installed (1.16.1.1 >= 1.13.5 is satisfied)
cdbs: missing
debhelper: missing
-Using default version 8.9.3
+Using default version 8.9.8
r-base-dev: missing
+Using default version 2.14.0-1
Checking for dependency conflicts...
Installing positive dependencies: cdbs debhelper r-base-dev
Reading package lists...
@@ -170,266 +169,271 @@ Building dependency tree...
Reading state information...
The following extra packages will be installed:
dpatch file fontconfig fontconfig-config gettext gettext-base gfortran
- gfortran-4.6 html2text intltool-debian libblas-dev libblas3gf libbz2-dev
- libcairo2 libcroco3 libdatrie1 libfontconfig1 libfreetype6 libgfortran3
- libglib2.0-0 libice6 libjpeg62 libjpeg8 libjpeg8-dev liblapack-dev
+ gfortran-4.6 groff-base html2text intltool-debian libblas-dev libblas3gf
+ libbz2-dev libcairo2 libcroco3 libdatrie1 libfontconfig1 libfreetype6
+ libgfortran3 libglib2.0-0 libice6 libjpeg8 libjpeg8-dev liblapack-dev
liblapack3gf libmagic1 libncurses5-dev libpango1.0-0 libpaper-utils
- libpaper1 libpcre3 libpcre3-dev libpcrecpp0 libpipeline1 libpixman-1-0
- libpng12-dev libreadline-dev libreadline6-dev libsm6 libthai-data libthai0
- libtiff4 libunistring0 libx11-6 libx11-data libxau6 libxcb-render0
+ libpaper1 libpcre3-dev libpcrecpp0 libpipeline1 libpixman-1-0 libpng12-dev
+ libreadline-dev libreadline6-dev libsm6 libthai-data libthai0 libtiff4
+ libtinfo-dev libunistring0 libx11-6 libx11-data libxau6 libxcb-render0
libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxrender1 libxss1
libxt6 man-db po-debconf r-base-core tcl8.5 tk8.5 ttf-dejavu-core ucf unzip
x11-common xdg-utils zip zlib1g-dev
Suggested packages:
devscripts dh-make curl defoma gettext-doc gfortran-doc gfortran-4.6-doc
- libgfortran3-dbg ncurses-doc ttf-baekmuk ttf-arphic-gbsn00lp
- ttf-arphic-bsmi00lp ttf-arphic-gkai00mp ttf-arphic-bkai00mp groff less
- www-browser libmail-box-perl r-doc-info r-doc-pdf r-mathlib r-base-html
- tclreadline gvfs-bin
+ libgfortran3-dbg groff ncurses-doc ttf-baekmuk ttf-arphic-gbsn00lp
+ ttf-arphic-bsmi00lp ttf-arphic-gkai00mp ttf-arphic-bkai00mp less www-browser
+ libmail-box-perl r-doc-info r-doc-pdf r-mathlib r-base-html tclreadline
+ gvfs-bin
Recommended packages:
- patchutils autopoint libglib2.0-data shared-mime-info x-ttcidfont-conf
- xml-core libmail-sendmail-perl r-recommended r-doc-html xterm
- x-terminal-emulator libfile-mimeinfo-perl x11-utils x11-xserver-utils
+ autotools-dev patchutils autopoint libglib2.0-data shared-mime-info
+ x-ttcidfont-conf xml-core libmail-sendmail-perl r-recommended r-doc-html
+ xterm x-terminal-emulator libfile-mimeinfo-perl x11-utils x11-xserver-utils
The following NEW packages will be installed:
cdbs debhelper dpatch file fontconfig fontconfig-config gettext gettext-base
- gfortran gfortran-4.6 html2text intltool-debian libblas-dev libblas3gf
- libbz2-dev libcairo2 libcroco3 libdatrie1 libfontconfig1 libfreetype6
- libgfortran3 libglib2.0-0 libice6 libjpeg62 libjpeg8 libjpeg8-dev
+ gfortran gfortran-4.6 groff-base html2text intltool-debian libblas-dev
+ libblas3gf libbz2-dev libcairo2 libcroco3 libdatrie1 libfontconfig1
+ libfreetype6 libgfortran3 libglib2.0-0 libice6 libjpeg8 libjpeg8-dev
liblapack-dev liblapack3gf libmagic1 libncurses5-dev libpango1.0-0
- libpaper-utils libpaper1 libpcre3 libpcre3-dev libpcrecpp0 libpipeline1
- libpixman-1-0 libpng12-dev libreadline-dev libreadline6-dev libsm6
- libthai-data libthai0 libtiff4 libunistring0 libx11-6 libx11-data libxau6
+ libpaper-utils libpaper1 libpcre3-dev libpcrecpp0 libpipeline1 libpixman-1-0
+ libpng12-dev libreadline-dev libreadline6-dev libsm6 libthai-data libthai0
+ libtiff4 libtinfo-dev libunistring0 libx11-6 libx11-data libxau6
libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2
libxrender1 libxss1 libxt6 man-db po-debconf r-base-core r-base-dev tcl8.5
tk8.5 ttf-dejavu-core ucf unzip x11-common xdg-utils zip zlib1g-dev
+0 upgraded, 72 newly installed, 0 to remove and 1 not upgraded.
+Need to get 19.1 MB/52.9 MB of archives.
+After this operation, 114 MB of additional disk space will be used.
+Get:1 http://ftp.gr.debian.org/debian/ sid/main libpaper-utils kfreebsd-i386 1.1.24+nmu1 [17.8 kB]
+Get:2 http://ftp.gr.debian.org/debian/ sid/main xdg-utils all 1.1.0~rc1-2 [70.2 kB]
+Get:3 http://ftp.gr.debian.org/debian/ sid/main r-base-core kfreebsd-i386 2.14.0-1 [19.0 MB]
+Get:4 http://ftp.gr.debian.org/debian/ sid/main r-base-dev all 2.14.0-1 [3488 B]
debconf: delaying package configuration, since apt-utils is not installed
-0 upgraded, 72 newly installed, 0 to remove and 5 not upgraded.
-Need to get 0 B/47.5 MB of archives.
-After this operation, 111 MB of additional disk space will be used.
-Selecting previously deselected package libpipeline1.
-(Reading database ... 12492 files and directories currently installed.)
-Unpacking libpipeline1 (from .../libpipeline1_1.2.0-3_kfreebsd-i386.deb) ...
-Selecting previously deselected package libdatrie1.
+Fetched 19.1 MB in 0s (19.5 MB/s)
+Selecting previously unselected package libpipeline1.
+(Reading database ... 12069 files and directories currently installed.)
+Unpacking libpipeline1 (from .../libpipeline1_1.2.0-4_kfreebsd-i386.deb) ...
+Selecting previously unselected package libglib2.0-0.
+Unpacking libglib2.0-0 (from .../libglib2.0-0_2.28.8-1_kfreebsd-i386.deb) ...
+Selecting previously unselected package libxml2.
+Unpacking libxml2 (from .../libxml2_2.7.8.dfsg-5_kfreebsd-i386.deb) ...
+Selecting previously unselected package libcroco3.
+Unpacking libcroco3 (from .../libcroco3_0.6.2-2_kfreebsd-i386.deb) ...
+Selecting previously unselected package libdatrie1.
Unpacking libdatrie1 (from .../libdatrie1_0.2.4-3_kfreebsd-i386.deb) ...
-Selecting previously deselected package libfreetype6.
-Unpacking libfreetype6 (from .../libfreetype6_2.4.4-2_kfreebsd-i386.deb) ...
-Selecting previously deselected package ucf.
+Selecting previously unselected package libfreetype6.
+Unpacking libfreetype6 (from .../libfreetype6_2.4.7-2_kfreebsd-i386.deb) ...
+Selecting previously unselected package ucf.
Unpacking ucf (from .../ucf_3.0025+nmu2_all.deb) ...
Moving old data out of the way
-Selecting previously deselected package ttf-dejavu-core.
-Unpacking ttf-dejavu-core (from .../ttf-dejavu-core_2.33-1_all.deb) ...
-Selecting previously deselected package fontconfig-config.
+Selecting previously unselected package ttf-dejavu-core.
+Unpacking ttf-dejavu-core (from .../ttf-dejavu-core_2.33-2_all.deb) ...
+Selecting previously unselected package fontconfig-config.
Unpacking fontconfig-config (from .../fontconfig-config_2.8.0-3_all.deb) ...
-Selecting previously deselected package libfontconfig1.
+Selecting previously unselected package libfontconfig1.
Unpacking libfontconfig1 (from .../libfontconfig1_2.8.0-3_kfreebsd-i386.deb) ...
-Selecting previously deselected package libgfortran3.
-Unpacking libgfortran3 (from .../libgfortran3_4.6.1-4_kfreebsd-i386.deb) ...
-Selecting previously deselected package x11-common.
-Unpacking x11-common (from .../x11-common_1%3a7.6+7_all.deb) ...
-Selecting previously deselected package libice6.
+Selecting previously unselected package libgfortran3.
+Unpacking libgfortran3 (from .../libgfortran3_4.6.2-3_kfreebsd-i386.deb) ...
+Selecting previously unselected package x11-common.
+Unpacking x11-common (from .../x11-common_1%3a7.6+9_all.deb) ...
+Selecting previously unselected package libice6.
Unpacking libice6 (from .../libice6_2%3a1.0.7-2_kfreebsd-i386.deb) ...
-Selecting previously deselected package libpixman-1-0.
-Unpacking libpixman-1-0 (from .../libpixman-1-0_0.22.2-1_kfreebsd-i386.deb) ...
-Selecting previously deselected package libxau6.
+Selecting previously unselected package libpixman-1-0.
+Unpacking libpixman-1-0 (from .../libpixman-1-0_0.23.8-1_kfreebsd-i386.deb) ...
+Selecting previously unselected package libxau6.
Unpacking libxau6 (from .../libxau6_1%3a1.0.6-3_kfreebsd-i386.deb) ...
-Selecting previously deselected package libxdmcp6.
+Selecting previously unselected package libxdmcp6.
Unpacking libxdmcp6 (from .../libxdmcp6_1%3a1.1.0-3_kfreebsd-i386.deb) ...
-Selecting previously deselected package libxcb1.
+Selecting previously unselected package libxcb1.
Unpacking libxcb1 (from .../libxcb1_1.7-3_kfreebsd-i386.deb) ...
-Selecting previously deselected package libx11-data.
-Unpacking libx11-data (from .../libx11-data_2%3a1.4.4-1_all.deb) ...
-Selecting previously deselected package libx11-6.
-Unpacking libx11-6 (from .../libx11-6_2%3a1.4.4-1_kfreebsd-i386.deb) ...
-Selecting previously deselected package libxcb-render0.
+Selecting previously unselected package libx11-data.
+Unpacking libx11-data (from .../libx11-data_2%3a1.4.4-2_all.deb) ...
+Selecting previously unselected package libx11-6.
+Unpacking libx11-6 (from .../libx11-6_2%3a1.4.4-2_kfreebsd-i386.deb) ...
+Selecting previously unselected package libxcb-render0.
Unpacking libxcb-render0 (from .../libxcb-render0_1.7-3_kfreebsd-i386.deb) ...
-Selecting previously deselected package libxcb-shm0.
+Selecting previously unselected package libxcb-shm0.
Unpacking libxcb-shm0 (from .../libxcb-shm0_1.7-3_kfreebsd-i386.deb) ...
-Selecting previously deselected package libxrender1.
+Selecting previously unselected package libxrender1.
Unpacking libxrender1 (from .../libxrender1_1%3a0.9.6-2_kfreebsd-i386.deb) ...
-Selecting previously deselected package libcairo2.
+Selecting previously unselected package libcairo2.
Unpacking libcairo2 (from .../libcairo2_1.10.2-6.1_kfreebsd-i386.deb) ...
-Selecting previously deselected package libpcre3.
-Unpacking libpcre3 (from .../libpcre3_8.12-3_kfreebsd-i386.deb) ...
-Selecting previously deselected package libglib2.0-0.
-Unpacking libglib2.0-0 (from .../libglib2.0-0_2.28.6-1_kfreebsd-i386.deb) ...
-Selecting previously deselected package libthai-data.
+Selecting previously unselected package libthai-data.
Unpacking libthai-data (from .../libthai-data_0.1.15-2_all.deb) ...
-Selecting previously deselected package libthai0.
+Selecting previously unselected package libthai0.
Unpacking libthai0 (from .../libthai0_0.1.15-2_kfreebsd-i386.deb) ...
-Selecting previously deselected package libxft2.
+Selecting previously unselected package libxft2.
Unpacking libxft2 (from .../libxft2_2.2.0-3_kfreebsd-i386.deb) ...
-Selecting previously deselected package fontconfig.
+Selecting previously unselected package fontconfig.
Unpacking fontconfig (from .../fontconfig_2.8.0-3_kfreebsd-i386.deb) ...
-Selecting previously deselected package libpango1.0-0.
-Unpacking libpango1.0-0 (from .../libpango1.0-0_1.28.4-2_kfreebsd-i386.deb) ...
-Selecting previously deselected package libsm6.
+Selecting previously unselected package libpango1.0-0.
+Unpacking libpango1.0-0 (from .../libpango1.0-0_1.29.4-2_kfreebsd-i386.deb) ...
+Selecting previously unselected package libpcrecpp0.
+Unpacking libpcrecpp0 (from .../libpcrecpp0_8.12-4_kfreebsd-i386.deb) ...
+Selecting previously unselected package libsm6.
Unpacking libsm6 (from .../libsm6_2%3a1.2.0-2_kfreebsd-i386.deb) ...
-Selecting previously deselected package libxext6.
+Selecting previously unselected package libjpeg8.
+Unpacking libjpeg8 (from .../libjpeg8_8c-2_kfreebsd-i386.deb) ...
+Selecting previously unselected package libtiff4.
+Unpacking libtiff4 (from .../libtiff4_3.9.5-2_kfreebsd-i386.deb) ...
+Selecting previously unselected package libunistring0.
+Unpacking libunistring0 (from .../libunistring0_0.9.3-5_kfreebsd-i386.deb) ...
+Selecting previously unselected package libxext6.
Unpacking libxext6 (from .../libxext6_2%3a1.3.0-3_kfreebsd-i386.deb) ...
-Selecting previously deselected package libxt6.
+Selecting previously unselected package libxss1.
+Unpacking libxss1 (from .../libxss1_1%3a1.2.1-2_kfreebsd-i386.deb) ...
+Selecting previously unselected package libxt6.
Unpacking libxt6 (from .../libxt6_1%3a1.1.1-2_kfreebsd-i386.deb) ...
-Selecting previously deselected package man-db.
+Selecting previously unselected package groff-base.
+Unpacking groff-base (from .../groff-base_1.21-6_kfreebsd-i386.deb) ...
+Selecting previously unselected package man-db.
Unpacking man-db (from .../man-db_2.6.0.2-2_kfreebsd-i386.deb) ...
-Selecting previously deselected package libmagic1.
-Unpacking libmagic1 (from .../libmagic1_5.04-5+b1_kfreebsd-i386.deb) ...
-Selecting previously deselected package file.
-Unpacking file (from .../file_5.04-5+b1_kfreebsd-i386.deb) ...
-Selecting previously deselected package gettext-base.
-Unpacking gettext-base (from .../gettext-base_0.18.1.1-3_kfreebsd-i386.deb) ...
-Selecting previously deselected package libxml2.
-Unpacking libxml2 (from .../libxml2_2.7.8.dfsg-4_kfreebsd-i386.deb) ...
-Selecting previously deselected package html2text.
+Selecting previously unselected package libmagic1.
+Unpacking libmagic1 (from .../libmagic1_5.09-2_kfreebsd-i386.deb) ...
+Selecting previously unselected package file.
+Unpacking file (from .../file_5.09-2_kfreebsd-i386.deb) ...
+Selecting previously unselected package gettext-base.
+Unpacking gettext-base (from .../gettext-base_0.18.1.1-5_kfreebsd-i386.deb) ...
+Selecting previously unselected package cdbs.
+Unpacking cdbs (from .../archives/cdbs_0.4.99_all.deb) ...
+Selecting previously unselected package html2text.
Unpacking html2text (from .../html2text_1.3.2a-15_kfreebsd-i386.deb) ...
-Selecting previously deselected package libcroco3.
-Unpacking libcroco3 (from .../libcroco3_0.6.2-1_kfreebsd-i386.deb) ...
-Selecting previously deselected package libunistring0.
-Unpacking libunistring0 (from .../libunistring0_0.9.3-4_kfreebsd-i386.deb) ...
-Selecting previously deselected package gettext.
-Unpacking gettext (from .../gettext_0.18.1.1-3_kfreebsd-i386.deb) ...
-Selecting previously deselected package intltool-debian.
+Selecting previously unselected package gettext.
+Unpacking gettext (from .../gettext_0.18.1.1-5_kfreebsd-i386.deb) ...
+Selecting previously unselected package intltool-debian.
Unpacking intltool-debian (from .../intltool-debian_0.35.0+20060710.1_all.deb) ...
-Selecting previously deselected package po-debconf.
+Selecting previously unselected package po-debconf.
Unpacking po-debconf (from .../po-debconf_1.0.16+nmu1_all.deb) ...
-Selecting previously deselected package debhelper.
-Unpacking debhelper (from .../debhelper_8.9.3_all.deb) ...
-Selecting previously deselected package cdbs.
-Unpacking cdbs (from .../archives/cdbs_0.4.96_all.deb) ...
-Selecting previously deselected package dpatch.
-Unpacking dpatch (from .../archives/dpatch_2.0.31_all.deb) ...
-Selecting previously deselected package gfortran-4.6.
-Unpacking gfortran-4.6 (from .../gfortran-4.6_4.6.1-4_kfreebsd-i386.deb) ...
-Selecting previously deselected package gfortran.
-Unpacking gfortran (from .../gfortran_4%3a4.6.1-2_kfreebsd-i386.deb) ...
-Selecting previously deselected package libblas3gf.
-Unpacking libblas3gf (from .../libblas3gf_1.2-8_kfreebsd-i386.deb) ...
-Selecting previously deselected package libblas-dev.
-Unpacking libblas-dev (from .../libblas-dev_1.2-8_kfreebsd-i386.deb) ...
-Selecting previously deselected package libbz2-dev.
-Unpacking libbz2-dev (from .../libbz2-dev_1.0.5-6_kfreebsd-i386.deb) ...
-Selecting previously deselected package libjpeg62.
-Unpacking libjpeg62 (from .../libjpeg62_6b1-2_kfreebsd-i386.deb) ...
-Selecting previously deselected package libjpeg8.
-Unpacking libjpeg8 (from .../libjpeg8_8c-2_kfreebsd-i386.deb) ...
-Selecting previously deselected package libjpeg8-dev.
+Selecting previously unselected package debhelper.
+Unpacking debhelper (from .../debhelper_8.9.8_all.deb) ...
+Selecting previously unselected package dpatch.
+Unpacking dpatch (from .../archives/dpatch_2.0.33_all.deb) ...
+Selecting previously unselected package gfortran-4.6.
+Unpacking gfortran-4.6 (from .../gfortran-4.6_4.6.2-3_kfreebsd-i386.deb) ...
+Selecting previously unselected package gfortran.
+Unpacking gfortran (from .../gfortran_4%3a4.6.1-3_kfreebsd-i386.deb) ...
+Selecting previously unselected package libblas3gf.
+Unpacking libblas3gf (from .../libblas3gf_1.2.20110419-2_kfreebsd-i386.deb) ...
+Selecting previously unselected package libblas-dev.
+Unpacking libblas-dev (from .../libblas-dev_1.2.20110419-2_kfreebsd-i386.deb) ...
+Selecting previously unselected package libbz2-dev.
+Unpacking libbz2-dev (from .../libbz2-dev_1.0.5-7_kfreebsd-i386.deb) ...
+Selecting previously unselected package libjpeg8-dev.
Unpacking libjpeg8-dev (from .../libjpeg8-dev_8c-2_kfreebsd-i386.deb) ...
-Selecting previously deselected package liblapack3gf.
-Unpacking liblapack3gf (from .../liblapack3gf_3.3.0-4_kfreebsd-i386.deb) ...
-Selecting previously deselected package liblapack-dev.
-Unpacking liblapack-dev (from .../liblapack-dev_3.3.0-4_kfreebsd-i386.deb) ...
-Selecting previously deselected package libncurses5-dev.
-Unpacking libncurses5-dev (from .../libncurses5-dev_5.9-1_kfreebsd-i386.deb) ...
-Selecting previously deselected package libpaper1.
+Selecting previously unselected package liblapack3gf.
+Unpacking liblapack3gf (from .../liblapack3gf_3.3.1-1_kfreebsd-i386.deb) ...
+Selecting previously unselected package liblapack-dev.
+Unpacking liblapack-dev (from .../liblapack-dev_3.3.1-1_kfreebsd-i386.deb) ...
+Selecting previously unselected package libtinfo-dev.
+Unpacking libtinfo-dev (from .../libtinfo-dev_5.9-2_kfreebsd-i386.deb) ...
+Selecting previously unselected package libncurses5-dev.
+Unpacking libncurses5-dev (from .../libncurses5-dev_5.9-2_kfreebsd-i386.deb) ...
+Selecting previously unselected package libpaper1.
Unpacking libpaper1 (from .../libpaper1_1.1.24+nmu1_kfreebsd-i386.deb) ...
-Selecting previously deselected package libpaper-utils.
+Selecting previously unselected package libpaper-utils.
Unpacking libpaper-utils (from .../libpaper-utils_1.1.24+nmu1_kfreebsd-i386.deb) ...
-Selecting previously deselected package libpcrecpp0.
-Unpacking libpcrecpp0 (from .../libpcrecpp0_8.12-3_kfreebsd-i386.deb) ...
-Selecting previously deselected package libpcre3-dev.
-Unpacking libpcre3-dev (from .../libpcre3-dev_8.12-3_kfreebsd-i386.deb) ...
-Selecting previously deselected package zlib1g-dev.
+Selecting previously unselected package libpcre3-dev.
+Unpacking libpcre3-dev (from .../libpcre3-dev_8.12-4_kfreebsd-i386.deb) ...
+Selecting previously unselected package zlib1g-dev.
Unpacking zlib1g-dev (from .../zlib1g-dev_1%3a1.2.3.4.dfsg-3_kfreebsd-i386.deb) ...
-Selecting previously deselected package libpng12-dev.
+Selecting previously unselected package libpng12-dev.
Unpacking libpng12-dev (from .../libpng12-dev_1.2.46-3_kfreebsd-i386.deb) ...
-Selecting previously deselected package libreadline6-dev.
-Unpacking libreadline6-dev (from .../libreadline6-dev_6.2-2_kfreebsd-i386.deb) ...
-Selecting previously deselected package libreadline-dev.
-Unpacking libreadline-dev (from .../libreadline-dev_6.2-2_kfreebsd-i386.deb) ...
-Selecting previously deselected package libtiff4.
-Unpacking libtiff4 (from .../libtiff4_3.9.5-1_kfreebsd-i386.deb) ...
-Selecting previously deselected package libxss1.
-Unpacking libxss1 (from .../libxss1_1%3a1.2.1-1_kfreebsd-i386.deb) ...
-Selecting previously deselected package zip.
+Selecting previously unselected package libreadline6-dev.
+Unpacking libreadline6-dev (from .../libreadline6-dev_6.2-7_kfreebsd-i386.deb) ...
+Selecting previously unselected package libreadline-dev.
+Unpacking libreadline-dev (from .../libreadline-dev_6.2-7_kfreebsd-i386.deb) ...
+Selecting previously unselected package zip.
Unpacking zip (from .../zip_3.0-4_kfreebsd-i386.deb) ...
-Selecting previously deselected package unzip.
+Selecting previously unselected package unzip.
Unpacking unzip (from .../unzip_6.0-5_kfreebsd-i386.deb) ...
-Selecting previously deselected package xdg-utils.
+Selecting previously unselected package xdg-utils.
Unpacking xdg-utils (from .../xdg-utils_1.1.0~rc1-2_all.deb) ...
-Selecting previously deselected package tcl8.5.
+Selecting previously unselected package tcl8.5.
Unpacking tcl8.5 (from .../tcl8.5_8.5.10-1_kfreebsd-i386.deb) ...
-Selecting previously deselected package tk8.5.
+Selecting previously unselected package tk8.5.
Unpacking tk8.5 (from .../tk8.5_8.5.10-1_kfreebsd-i386.deb) ...
-Selecting previously deselected package r-base-core.
-Unpacking r-base-core (from .../r-base-core_2.13.1-1_kfreebsd-i386.deb) ...
-Selecting previously deselected package r-base-dev.
-Unpacking r-base-dev (from .../r-base-dev_2.13.1-1_all.deb) ...
-Setting up libpipeline1 (1.2.0-3) ...
+Selecting previously unselected package r-base-core.
+Unpacking r-base-core (from .../r-base-core_2.14.0-1_kfreebsd-i386.deb) ...
+Selecting previously unselected package r-base-dev.
+Unpacking r-base-dev (from .../r-base-dev_2.14.0-1_all.deb) ...
+Setting up libpipeline1 (1.2.0-4) ...
+Setting up libglib2.0-0 (2.28.8-1) ...
+No schema files found: doing nothing.
+Setting up libxml2 (2.7.8.dfsg-5) ...
+Setting up libcroco3 (0.6.2-2) ...
Setting up libdatrie1 (0.2.4-3) ...
-Setting up libfreetype6 (2.4.4-2) ...
+Setting up libfreetype6 (2.4.7-2) ...
Setting up ucf (3.0025+nmu2) ...
-Setting up ttf-dejavu-core (2.33-1) ...
+Setting up ttf-dejavu-core (2.33-2) ...
Setting up fontconfig-config (2.8.0-3) ...
Setting up libfontconfig1 (2.8.0-3) ...
-Setting up libgfortran3 (4.6.1-4) ...
-Setting up x11-common (1:7.6+7) ...
+Setting up libgfortran3 (4.6.2-3) ...
+Setting up x11-common (1:7.6+9) ...
All runlevel operations denied by policy
invoke-rc.d: policy-rc.d denied execution of start.
Setting up libice6 (2:1.0.7-2) ...
-Setting up libpixman-1-0 (0.22.2-1) ...
+Setting up libpixman-1-0 (0.23.8-1) ...
Setting up libxau6 (1:1.0.6-3) ...
Setting up libxdmcp6 (1:1.1.0-3) ...
Setting up libxcb1 (1.7-3) ...
-Setting up libx11-data (2:1.4.4-1) ...
-Setting up libx11-6 (2:1.4.4-1) ...
+Setting up libx11-data (2:1.4.4-2) ...
+Setting up libx11-6 (2:1.4.4-2) ...
Setting up libxcb-render0 (1.7-3) ...
Setting up libxcb-shm0 (1.7-3) ...
Setting up libxrender1 (1:0.9.6-2) ...
Setting up libcairo2 (1.10.2-6.1) ...
-Setting up libpcre3 (8.12-3) ...
-Setting up libglib2.0-0 (2.28.6-1) ...
-No schema files found: doing nothing.
Setting up libthai-data (0.1.15-2) ...
Setting up libthai0 (0.1.15-2) ...
Setting up libxft2 (2.2.0-3) ...
Setting up fontconfig (2.8.0-3) ...
Cleaning up old fontconfig caches... done.
Regenerating fonts cache... done.
-Setting up libpango1.0-0 (1.28.4-2) ...
+Setting up libpango1.0-0 (1.29.4-2) ...
+Setting up libpcrecpp0 (8.12-4) ...
Setting up libsm6 (2:1.2.0-2) ...
+Setting up libjpeg8 (8c-2) ...
+Setting up libtiff4 (3.9.5-2) ...
+Setting up libunistring0 (0.9.3-5) ...
Setting up libxext6 (2:1.3.0-3) ...
+Setting up libxss1 (1:1.2.1-2) ...
Setting up libxt6 (1:1.1.1-2) ...
+Setting up groff-base (1.21-6) ...
Setting up man-db (2.6.0.2-2) ...
Building database of manual pages ...
-Setting up libmagic1 (5.04-5+b1) ...
-Setting up file (5.04-5+b1) ...
-Setting up gettext-base (0.18.1.1-3) ...
-Setting up libxml2 (2.7.8.dfsg-4) ...
+Setting up libmagic1 (5.09-2) ...
+Setting up file (5.09-2) ...
+Setting up gettext-base (0.18.1.1-5) ...
+Setting up cdbs (0.4.99) ...
Setting up html2text (1.3.2a-15) ...
-Setting up libcroco3 (0.6.2-1) ...
-Setting up libunistring0 (0.9.3-4) ...
-Setting up gettext (0.18.1.1-3) ...
+Setting up gettext (0.18.1.1-5) ...
Setting up intltool-debian (0.35.0+20060710.1) ...
Setting up po-debconf (1.0.16+nmu1) ...
-Setting up debhelper (8.9.3) ...
-Setting up cdbs (0.4.96) ...
-Setting up dpatch (2.0.31) ...
-Setting up gfortran-4.6 (4.6.1-4) ...
-Setting up gfortran (4:4.6.1-2) ...
+Setting up debhelper (8.9.8) ...
+Setting up dpatch (2.0.33) ...
+Setting up gfortran-4.6 (4.6.2-3) ...
+Setting up gfortran (4:4.6.1-3) ...
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode.
-Setting up libblas3gf (1.2-8) ...
+Setting up libblas3gf (1.2.20110419-2) ...
update-alternatives: using /usr/lib/libblas/libblas.so.3gf to provide /usr/lib/libblas.so.3gf (libblas.so.3gf) in auto mode.
-Setting up libblas-dev (1.2-8) ...
+Setting up libblas-dev (1.2.20110419-2) ...
update-alternatives: using /usr/lib/libblas/libblas.so to provide /usr/lib/libblas.so (libblas.so) in auto mode.
-Setting up libbz2-dev (1.0.5-6) ...
-Setting up libjpeg62 (6b1-2) ...
-Setting up libjpeg8 (8c-2) ...
+Setting up libbz2-dev (1.0.5-7) ...
Setting up libjpeg8-dev (8c-2) ...
-Setting up liblapack3gf (3.3.0-4) ...
+Setting up liblapack3gf (3.3.1-1) ...
update-alternatives: using /usr/lib/lapack/liblapack.so.3gf to provide /usr/lib/liblapack.so.3gf (liblapack.so.3gf) in auto mode.
-Setting up liblapack-dev (3.3.0-4) ...
+Setting up liblapack-dev (3.3.1-1) ...
update-alternatives: using /usr/lib/lapack/liblapack.so to provide /usr/lib/liblapack.so (liblapack.so) in auto mode.
-Setting up libncurses5-dev (5.9-1) ...
+Setting up libtinfo-dev (5.9-2) ...
+Setting up libncurses5-dev (5.9-2) ...
Setting up libpaper1 (1.1.24+nmu1) ...
Creating config file /etc/papersize with new version
Setting up libpaper-utils (1.1.24+nmu1) ...
-Setting up libpcrecpp0 (8.12-3) ...
-Setting up libpcre3-dev (8.12-3) ...
+Setting up libpcre3-dev (8.12-4) ...
Setting up zlib1g-dev (1:1.2.3.4.dfsg-3) ...
Setting up libpng12-dev (1.2.46-3) ...
-Setting up libreadline6-dev (6.2-2) ...
-Setting up libreadline-dev (6.2-2) ...
-Setting up libtiff4 (3.9.5-1) ...
-Setting up libxss1 (1:1.2.1-1) ...
+Setting up libreadline6-dev (6.2-7) ...
+Setting up libreadline-dev (6.2-7) ...
Setting up zip (3.0-4) ...
Setting up unzip (6.0-5) ...
Setting up xdg-utils (1.1.0~rc1-2) ...
@@ -437,20 +441,20 @@ Setting up tcl8.5 (8.5.10-1) ...
update-alternatives: using /usr/bin/tclsh8.5 to provide /usr/bin/tclsh (tclsh) in auto mode.
Setting up tk8.5 (8.5.10-1) ...
update-alternatives: using /usr/bin/wish8.5 to provide /usr/bin/wish (wish) in auto mode.
-Setting up r-base-core (2.13.1-1) ...
+Setting up r-base-core (2.14.0-1) ...
Setting R_PAPERSIZE_USER default to 'a4'
Creating config file /etc/R/Renviron with new version
-Setting up r-base-dev (2.13.1-1) ...
+Setting up r-base-dev (2.14.0-1) ...
Removing negative dependencies:
Reading package lists...
Building dependency tree...
Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 5 not upgraded.
+0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded.
Checking correctness of dependencies...
Kernel: GNU/kFreeBSD 8.1-1-686-smp kfreebsd-i386 (i686)
-Toolchain package versions: binutils_2.21.53.20110729-1 dpkg-dev_1.16.0.3 g++-4.6_4.6.1-4 gcc-4.6_4.6.1-4 kfreebsd-kernel-headers_0.56 libc0.1-dev_2.13-13 libstdc++6_4.6.1-4 libstdc++6-4.6-dev_4.6.1-4
-Package versions: apt_0.8.15.5 autotools-dev_20110511.1 base-files_6.5 base-passwd_3.5.23 bash_4.1-3 binutils_2.21.53.20110729-1 bsdmainutils_8.2.3 bsdutils_1:2.19.1-4 build-essential_11.5 bzip2_1.0.5-6 cdbs_0.4.96 coreutils_8.5-1 cpio_2.11-7 cpp_4:4.6.1-2 cpp-4.6_4.6.1-4 dash_0.5.5.1-7.4 debconf_1.5.41 debconf-english_1.5.38 debfoster_2.7-1.1 debhelper_8.9.3 debian-archive-keyring_2010.08.28 debianutils_4.0.2 diffutils_1:3.0-1 dpatch_2.0.31 dpkg_1.16.0.3 dpkg-dev_1.16.0.3 e2fslibs_1.42~WIP-2011-07-02-1 e2fsprogs_1.42~WIP-2011-07-02-1 fakeroot_1.16-1 file_5.04-5+b1 findutils_4.4.2-1 fontconfig_2.8.0-3 fontconfig-config_2.8.0-3 freebsd-utils_8.2+ds2-5 g++_4:4.6.1-2 g++-4.6_4.6.1-4 gcc_4:4.6.1-2 gcc-4.2-base_4.2.4-6 gcc-4.4-base_4.4.6-7 gcc-4.5-base_4.5.3-3 gcc-4.6_4.6.1-4 gcc-4.6-base_4.6.1-4 gettext_0.18.1.1-3 gettext-base_0.18.1.1-3 gfortran_4:4.6.1-2 gfortran-4.6_4.6.1-4 gnupg_1.4.11-3 gpgv_1.4.11-3 grep_2.9-1 groff-base_1.21-6 gzip_1.4-1 hostname_3.06 html2text_1.3.2a-15 initscripts_2.88dsf-13.11 insserv_1.14.0-2.1 intltool-debian_0.35.0+20060710.1 kfreebsd-kernel-headers_0.56 libacl1_2.2.51-3 libattr1_1:2.4.46-3 libblas-dev_1.2-8 libblas3gf_1.2-8 libblkid1_2.19.1-4 libbsd0_0.3.0-1 libbz2-1.0_1.0.5-6 libbz2-dev_1.0.5-6 libc-bin_2.13-13 libc-dev-bin_2.13-13 libc0.1_2.13-13 libc0.1-dev_2.13-13 libcairo2_1.10.2-6.1 libcam0_8.2+ds1-3 libcloog-ppl0_0.15.9-3 libcomerr2_1.42~WIP-2011-07-02-1 libcroco3_0.6.2-1 libdatrie1_0.2.4-3 libdb5.1_5.1.25-11 libdpkg-perl_1.16.0.3 libexpat1_2.0.1-7 libfontconfig1_2.8.0-3 libfreetype6_2.4.4-2 libgc1c2_1:7.1-8 libgcc1_1:4.6.1-4 libgcrypt11_1.4.6-8 libgdbm3_1.8.3-10 libgeom1_8.2+ds1-3 libgfortran3_4.6.1-4 libglib2.0-0_2.28.6-1 libgmp10_2:5.0.1+dfsg-7 libgmpxx4ldbl_2:5.0.1+dfsg-7 libgnutls26_2.10.5-3 libgomp1_4.6.1-4 libgpg-error0_1.10-0.3 libgssglue1_0.3-2 libice6_2:1.0.7-2 libjail1_8.2+ds1-3 libjpeg62_6b1-2 libjpeg8_8c-2 libjpeg8-dev_8c-2 libkiconv4_8.2+ds1-3 libkvm0_8.2+ds1-3 liblapack-dev_3.3.0-4 liblapack3gf_3.3.0-4 libldap-2.4-2_2.4.25-1.1 liblzma2_5.0.0-2 libmagic1_5.04-5+b1 libmpc2_0.9-3 libmpfr4_3.0.1-5 libncurses5_5.9-1 libncurses5-dev_5.9-1 libncursesw5_5.9-1 libpam-modules_1.1.3-2 libpam-modules-bin_1.1.3-2 libpam-runtime_1.1.3-2 libpam0g_1.1.3-2 libpango1.0-0_1.28.4-2 libpaper-utils_1.1.24+nmu1 libpaper1_1.1.24+nmu1 libpcre3_8.12-3 libpcre3-dev_8.12-3 libpcrecpp0_8.12-3 libpipeline1_1.2.0-3 libpixman-1-0_0.22.2-1 libpng12-0_1.2.46-3 libpng12-dev_1.2.46-3 libppl-c4_0.11.2-4 libppl9_0.11.2-4 libpwl5_0.11.2-4 libquadmath0_4.6.1-4 libreadline-dev_6.2-2 libreadline6_6.2-2 libreadline6-dev_6.2-2 libsasl2-2_2.1.24~rc1.dfsg1+cvs2011-05-23-4 libsbuf0_8.2+ds1-3 libslang2_2.2.4-2 libsm6_2:1.2.0-2 libss2_1.42~WIP-2011-07-02-1 libstdc++6_4.6.1-4 libstdc++6-4.6-dev_4.6.1-4 libtasn1-3_2.9-4 libthai-data_0.1.15-2 libthai0_0.1.15-2 libtiff4_3.9.5-1 libtimedate-perl_1.2000-1 libtirpc1_0.2.2-5 libunistring0_0.9.3-4 libusb-0.1-4_2:0.1.12-18 libuuid1_2.19.1-4 libx11-6_2:1.4.4-1 libx11-data_2:1.4.4-1 libxau6_1:1.0.6-3 libxcb-render0_1.7-3 libxcb-shm0_1.7-3 libxcb1_1.7-3 libxdmcp6_1:1.1.0-3 libxext6_2:1.3.0-3 libxft2_2.2.0-3 libxml2_2.7.8.dfsg-4 libxrender1_1:0.9.6-2 libxss1_1:1.2.1-1 libxt6_1:1.1.1-2 login_1:4.1.4.2+svn3283-3 lsb-base_3.2-27 lzma_4.43-14 make_3.81-8.1 man-db_2.6.0.2-2 mawk_1.3.3-15 multiarch-support_2.13-13 ncurses-base_5.9-1 ncurses-bin_5.9-1 netbase_4.46 passwd_1:4.1.4.2+svn3283-3 patch_2.6.1-2 perl_5.12.4-2 perl-base_5.12.4-2 perl-modules_5.12.4-2 po-debconf_1.0.16+nmu1 procps_1:3.2.8-11 psmisc_22.13-1 r-base-core_2.13.1-1 r-base-dev_2.13.1-1 readline-common_6.2-2 sed_4.2.1-9 sensible-utils_0.0.6 sudo_1.7.4p6-1 sysv-rc_2.88dsf-13.11 sysvinit_2.88dsf-13.11 sysvinit-utils_2.88dsf-13.11 tar_1.25-3 tcl8.5_8.5.10-1 tk8.5_8.5.10-1 ttf-dejavu-core_2.33-1 tzdata_2011h-3 ucf_3.0025+nmu2 unzip_6.0-5 util-linux_2.19.1-4 x11-common_1:7.6+7 xdg-utils_1.1.0~rc1-2 xz-utils_5.0.0-2 zip_3.0-4 zlib1g_1:1.2.3.4.dfsg-3 zlib1g-dev_1:1.2.3.4.dfsg-3
+Toolchain package versions: binutils_2.21.90.20111025-1 dpkg-dev_1.16.1.1 g++-4.6_4.6.2-3 gcc-4.6_4.6.2-3 kfreebsd-kernel-headers_0.57 libc0.1-dev_2.13-21 libstdc++6_4.6.2-3 libstdc++6-4.6-dev_4.6.2-3
+Package versions: apt_0.8.15.9 base-files_6.5 base-passwd_3.5.23 bash_4.1-3 binutils_2.21.90.20111025-1 bsdmainutils_8.2.3 bsdutils_1:2.19.1-5 build-essential_11.5 bzip2_1.0.5-7 cdbs_0.4.99 coreutils_8.13-3 cpp_4:4.6.1-3 cpp-4.6_4.6.2-3 dash_0.5.7-2 debconf_1.5.41 debconf-english_1.5.38 debfoster_2.7-1.1 debhelper_8.9.8 debian-archive-keyring_2010.08.28 debianutils_4.0.4 diffutils_1:3.2-1 dpatch_2.0.33 dpkg_1.16.1.1 dpkg-dev_1.16.1.1 e2fslibs_1.42~WIP-2011-10-16-1 e2fsprogs_1.42~WIP-2011-10-16-1 fakeroot_1.18.1-1 file_5.09-2 findutils_4.4.2-1 fontconfig_2.8.0-3 fontconfig-config_2.8.0-3 freebsd-utils_8.2+ds2-5 g++_4:4.6.1-3 g++-4.6_4.6.2-3 gcc_4:4.6.1-3 gcc-4.4-base_4.4.6-11 gcc-4.5-base_4.5.3-9 gcc-4.6_4.6.2-3 gcc-4.6-base_4.6.2-3 gettext_0.18.1.1-5 gettext-base_0.18.1.1-5 gfortran_4:4.6.1-3 gfortran-4.6_4.6.2-3 gnupg_1.4.11-3 gpgv_1.4.11-3 grep_2.9-2 groff-base_1.21-6 gzip_1.4-1 hostname_3.06 html2text_1.3.2a-15 initscripts_2.88dsf-13.12 insserv_1.14.0-2.1 intltool-debian_0.35.0+20060710.1 kfreebsd-kernel-headers_0.57 libacl1_2.2.51-3 libattr1_1:2.4.46-3 libblas-dev_1.2.20110419-2 libblas3gf_1.2.20110419-2 libblkid1_2.19.1-5 libbsd0_0.3.0-1 libbz2-1.0_1.0.5-7 libbz2-dev_1.0.5-7 libc-bin_2.13-21 libc-dev-bin_2.13-21 libc0.1_2.13-21 libc0.1-dev_2.13-21 libcairo2_1.10.2-6.1 libcam0_8.2+ds1-4 libcomerr2_1.42~WIP-2011-10-16-1 libcroco3_0.6.2-2 libdatrie1_0.2.4-3 libdb5.1_5.1.25-11 libdpkg-perl_1.16.1.1 libexpat1_2.0.1-7.1 libfontconfig1_2.8.0-3 libfreetype6_2.4.7-2 libgc1c2_1:7.1-8 libgcc1_1:4.6.2-3 libgdbm3_1.8.3-10 libgeom1_8.2+ds1-4 libgfortran3_4.6.2-3 libglib2.0-0_2.28.8-1 libgmp10_2:5.0.2+dfsg-2 libgomp1_4.6.2-3 libgssglue1_0.3-3.1 libice6_2:1.0.7-2 libjail1_8.2+ds1-4 libjpeg8_8c-2 libjpeg8-dev_8c-2 libkiconv4_8.2+ds1-4 libkvm0_8.2+ds1-4 liblapack-dev_3.3.1-1 liblapack3gf_3.3.1-1 liblzma2_5.1.1alpha+20110809-2 liblzma5_5.1.1alpha+20110809-3 libmagic1_5.09-2 libmpc2_0.9-4 libmpfr4_3.1.0-2 libncurses5_5.9-2 libncurses5-dev_5.9-2 libncursesw5_5.9-2 libpam-modules_1.1.3-5 libpam-modules-bin_1.1.3-5 libpam-runtime_1.1.3-5 libpam0g_1.1.3-5 libpango1.0-0_1.29.4-2 libpaper-utils_1.1.24+nmu1 libpaper1_1.1.24+nmu1 libpcre3_8.12-4 libpcre3-dev_8.12-4 libpcrecpp0_8.12-4 libpipeline1_1.2.0-4 libpixman-1-0_0.23.8-1 libpng12-0_1.2.46-3 libpng12-dev_1.2.46-3 libquadmath0_4.6.2-3 libreadline-dev_6.2-7 libreadline6_6.2-7 libreadline6-dev_6.2-7 libsbuf0_8.2+ds1-4 libslang2_2.2.4-3 libsm6_2:1.2.0-2 libss2_1.42~WIP-2011-10-16-1 libstdc++6_4.6.2-3 libstdc++6-4.6-dev_4.6.2-3 libthai-data_0.1.15-2 libthai0_0.1.15-2 libtiff4_3.9.5-2 libtimedate-perl_1.2000-1 libtinfo-dev_5.9-2 libtinfo5_5.9-2 libtirpc1_0.2.2-5 libunistring0_0.9.3-5 libusb-0.1-4_2:0.1.12-19 libuuid1_2.19.1-5 libx11-6_2:1.4.4-2 libx11-data_2:1.4.4-2 libxau6_1:1.0.6-3 libxcb-render0_1.7-3 libxcb-shm0_1.7-3 libxcb1_1.7-3 libxdmcp6_1:1.1.0-3 libxext6_2:1.3.0-3 libxft2_2.2.0-3 libxml2_2.7.8.dfsg-5 libxrender1_1:0.9.6-2 libxss1_1:1.2.1-2 libxt6_1:1.1.1-2 login_1:4.1.4.2+svn3283-3 lsb-base_3.2-28 lzma_4.43-14 make_3.81-8.1 man-db_2.6.0.2-2 mawk_1.3.3-16 multiarch-support_2.13-21 ncurses-base_5.9-2 ncurses-bin_5.9-2 netbase_4.47 passwd_1:4.1.4.2+svn3283-3 patch_2.6.1-2 perl_5.12.4-6 perl-base_5.12.4-6 perl-modules_5.12.4-6 po-debconf_1.0.16+nmu1 procps_1:3.2.8-11 psmisc_22.13-1 r-base-core_2.14.0-1 r-base-dev_2.14.0-1 readline-common_6.2-7 sed_4.2.1-9 sensible-utils_0.0.6 sudo_1.8.3p1-1 sysv-rc_2.88dsf-13.12 sysvinit_2.88dsf-13.12 sysvinit-utils_2.88dsf-13.12 tar_1.25-3 tcl8.5_8.5.10-1 tk8.5_8.5.10-1 ttf-dejavu-core_2.33-2 type-handling_0.2.23 tzdata_2011m-1 ucf_3.0025+nmu2 unzip_6.0-5 util-linux_2.19.1-5 x11-common_1:7.6+9 xdg-utils_1.1.0~rc1-2 xz-utils_5.1.1alpha+20110809-3 zip_3.0-4 zlib1g_1:1.2.3.4.dfsg-3 zlib1g-dev_1:1.2.3.4.dfsg-3
┌──────────────────────────────────────────────────────────────────────────────┐
│ Build │
@@ -461,12 +465,12 @@ Unpack source
─────────────
gpgv: keyblock resource `/home/buildd/.gnupg/trustedkeys.gpg': file open error
-gpgv: Signature made Thu Aug 4 00:12:34 2011 UTC using RSA key ID 2295D502
+gpgv: Signature made Wed Nov 2 05:31:37 2011 UTC using RSA key ID 2295D502
gpgv: Can't check signature: public key not found
-dpkg-source: warning: failed to verify signature on ./r-bioc-biobase_2.12.2-1.dsc
-dpkg-source: info: extracting r-bioc-biobase in r-bioc-biobase-2.12.2
-dpkg-source: info: unpacking r-bioc-biobase_2.12.2.orig.tar.gz
-dpkg-source: info: applying r-bioc-biobase_2.12.2-1.diff.gz
+dpkg-source: warning: failed to verify signature on ./r-bioc-biobase_2.14.0-1.dsc
+dpkg-source: info: extracting r-bioc-biobase in r-bioc-biobase-2.14.0
+dpkg-source: info: unpacking r-bioc-biobase_2.14.0.orig.tar.gz
+dpkg-source: info: applying r-bioc-biobase_2.14.0-1.diff.gz
Check disc space
────────────────
@@ -475,24 +479,19 @@ Check disc space
dpkg-buildpackage
─────────────────
-dpkg-buildpackage: export CFLAGS from dpkg-buildflags (origin: vendor): -g -O2
-dpkg-buildpackage: export CPPFLAGS from dpkg-buildflags (origin: vendor):
-dpkg-buildpackage: export CXXFLAGS from dpkg-buildflags (origin: vendor): -g -O2
-dpkg-buildpackage: export FFLAGS from dpkg-buildflags (origin: vendor): -g -O2
-dpkg-buildpackage: export LDFLAGS from dpkg-buildflags (origin: vendor):
dpkg-buildpackage: source package r-bioc-biobase
-dpkg-buildpackage: source version 2.12.2-1
- dpkg-source --before-build r-bioc-biobase-2.12.2
+dpkg-buildpackage: source version 2.14.0-1
+ dpkg-source --before-build r-bioc-biobase-2.14.0
dpkg-buildpackage: host architecture kfreebsd-i386
fakeroot debian/rules clean
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
test -x debian/rules
dh_testroot
/usr/bin/make -f debian/rules reverse-config
-/usr/share/cdbs/1/rules/simple-patchsys.mk:31: make[1]: Entering directory `/build/buildd-r-bioc-biobase_2.12.2-1-kfreebsd-i386-sll1Or/r-bioc-biobase-2.12.2'
-WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
+/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
+make[1]: Entering directory `/build/buildd-r-bioc-biobase_2.14.0-1-kfreebsd-i386-r1Qsa2/r-bioc-biobase-2.14.0'
make[1]: Nothing to be done for `reverse-config'.
-make[1]: Leaving directory `/build/buildd-r-bioc-biobase_2.12.2-1-kfreebsd-i386-sll1Or/r-bioc-biobase-2.12.2'
+make[1]: Leaving directory `/build/buildd-r-bioc-biobase_2.14.0-1-kfreebsd-i386-r1Qsa2/r-bioc-biobase-2.14.0'
if [ "reverse-patches" = "reverse-patches" ]; then rm -f debian/stamp-patched; fi
patches:
if [ "reverse-patches" != "reverse-patches" ]; then touch debian/stamp-patched; fi
@@ -512,21 +511,22 @@ rm -f config.log config.status
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
test -x debian/rules
mkdir -p "."
+/usr/share/cdbs/1/rules/buildcore.mk:109: WARNING: DEB_DH_BUILDDEB_ARGS is a deprecated variable
/usr/bin/make -f debian/rules reverse-config
-/usr/share/cdbs/1/rules/simple-patchsys.mk:31: make[1]: Entering directory `/build/buildd-r-bioc-biobase_2.12.2-1-kfreebsd-i386-sll1Or/r-bioc-biobase-2.12.2'
-WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
+/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
+make[1]: Entering directory `/build/buildd-r-bioc-biobase_2.14.0-1-kfreebsd-i386-r1Qsa2/r-bioc-biobase-2.14.0'
make[1]: Nothing to be done for `reverse-config'.
-make[1]: Leaving directory `/build/buildd-r-bioc-biobase_2.12.2-1-kfreebsd-i386-sll1Or/r-bioc-biobase-2.12.2'
+make[1]: Leaving directory `/build/buildd-r-bioc-biobase_2.14.0-1-kfreebsd-i386-r1Qsa2/r-bioc-biobase-2.14.0'
if [ "debian/stamp-patched" = "reverse-patches" ]; then rm -f debian/stamp-patched; fi
patches:
if [ "debian/stamp-patched" != "reverse-patches" ]; then touch debian/stamp-patched; fi
if [ "debian/stamp-patched" != "reverse-patches" ] ; then \
/usr/bin/make -f debian/rules update-config ; \
fi
-/usr/share/cdbs/1/rules/simple-patchsys.mk:31: make[1]: Entering directory `/build/buildd-r-bioc-biobase_2.12.2-1-kfreebsd-i386-sll1Or/r-bioc-biobase-2.12.2'
-WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
+/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
+make[1]: Entering directory `/build/buildd-r-bioc-biobase_2.14.0-1-kfreebsd-i386-r1Qsa2/r-bioc-biobase-2.14.0'
make[1]: Nothing to be done for `update-config'.
-make[1]: Leaving directory `/build/buildd-r-bioc-biobase_2.12.2-1-kfreebsd-i386-sll1Or/r-bioc-biobase-2.12.2'
+make[1]: Leaving directory `/build/buildd-r-bioc-biobase_2.14.0-1-kfreebsd-i386-r1Qsa2/r-bioc-biobase-2.14.0'
fakeroot debian/rules binary-arch
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
test -x debian/rules
@@ -534,29 +534,30 @@ dh_testroot
dh_prep
dh_installdirs -A
mkdir -p "."
+/usr/share/cdbs/1/rules/buildcore.mk:109: WARNING: DEB_DH_BUILDDEB_ARGS is a deprecated variable
dh_installdirs usr/lib/R/site-library
if test -f /usr/bin/xvfb-run; then \
xvfb-run -a \
- R CMD INSTALL -l /build/buildd-r-bioc-biobase_2.12.2-1-kfreebsd-i386-sll1Or/r-bioc-biobase-2.12.2/debian/r-bioc-biobase/usr/lib/R/site-library --clean \
+ R CMD INSTALL -l /build/buildd-r-bioc-biobase_2.14.0-1-kfreebsd-i386-r1Qsa2/r-bioc-biobase-2.14.0/debian/r-bioc-biobase/usr/lib/R/site-library --clean \
. ; \
else \
- R CMD INSTALL -l /build/buildd-r-bioc-biobase_2.12.2-1-kfreebsd-i386-sll1Or/r-bioc-biobase-2.12.2/debian/r-bioc-biobase/usr/lib/R/site-library \
+ R CMD INSTALL -l /build/buildd-r-bioc-biobase_2.14.0-1-kfreebsd-i386-r1Qsa2/r-bioc-biobase-2.14.0/debian/r-bioc-biobase/usr/lib/R/site-library \
--clean . ;\
fi
* installing *source* package 'Biobase' ...
** libs
-make[1]: Entering directory `/build/buildd-r-bioc-biobase_2.12.2-1-kfreebsd-i386-sll1Or/r-bioc-biobase-2.12.2/src'
-gcc -I/usr/share/R/include -fpic -std=gnu99 -O3 -pipe -g -c Rinit.c -o Rinit.o
-gcc -I/usr/share/R/include -fpic -std=gnu99 -O3 -pipe -g -c anyMissing.c -o anyMissing.o
-gcc -I/usr/share/R/include -fpic -std=gnu99 -O3 -pipe -g -c envir.c -o envir.o
-gcc -I/usr/share/R/include -fpic -std=gnu99 -O3 -pipe -g -c matchpt.c -o matchpt.o
-gcc -I/usr/share/R/include -fpic -std=gnu99 -O3 -pipe -g -c rowMedians.c -o rowMedians.o
-gcc -I/usr/share/R/include -fpic -std=gnu99 -O3 -pipe -g -c sublist_extract.c -o sublist_extract.o
-gcc -shared -o Biobase.so Rinit.o anyMissing.o envir.o matchpt.o rowMedians.o sublist_extract.o -L/usr/lib/R/lib -lR
-make[1]: Leaving directory `/build/buildd-r-bioc-biobase_2.12.2-1-kfreebsd-i386-sll1Or/r-bioc-biobase-2.12.2/src'
-make[1]: Entering directory `/build/buildd-r-bioc-biobase_2.12.2-1-kfreebsd-i386-sll1Or/r-bioc-biobase-2.12.2/src'
-make[1]: Leaving directory `/build/buildd-r-bioc-biobase_2.12.2-1-kfreebsd-i386-sll1Or/r-bioc-biobase-2.12.2/src'
-installing to /build/buildd-r-bioc-biobase_2.12.2-1-kfreebsd-i386-sll1Or/r-bioc-biobase-2.12.2/debian/r-bioc-biobase/usr/lib/R/site-library/Biobase/libs
+make[1]: Entering directory `/build/buildd-r-bioc-biobase_2.14.0-1-kfreebsd-i386-r1Qsa2/r-bioc-biobase-2.14.0/src'
+gcc -std=gnu99 -I/usr/share/R/include -fpic -O3 -pipe -g -c Rinit.c -o Rinit.o
+gcc -std=gnu99 -I/usr/share/R/include -fpic -O3 -pipe -g -c anyMissing.c -o anyMissing.o
+gcc -std=gnu99 -I/usr/share/R/include -fpic -O3 -pipe -g -c envir.c -o envir.o
+gcc -std=gnu99 -I/usr/share/R/include -fpic -O3 -pipe -g -c matchpt.c -o matchpt.o
+gcc -std=gnu99 -I/usr/share/R/include -fpic -O3 -pipe -g -c rowMedians.c -o rowMedians.o
+gcc -std=gnu99 -I/usr/share/R/include -fpic -O3 -pipe -g -c sublist_extract.c -o sublist_extract.o
+gcc -std=gnu99 -shared -o Biobase.so Rinit.o anyMissing.o envir.o matchpt.o rowMedians.o sublist_extract.o -L/usr/lib/R/lib -lR
+make[1]: Leaving directory `/build/buildd-r-bioc-biobase_2.14.0-1-kfreebsd-i386-r1Qsa2/r-bioc-biobase-2.14.0/src'
+make[1]: Entering directory `/build/buildd-r-bioc-biobase_2.14.0-1-kfreebsd-i386-r1Qsa2/r-bioc-biobase-2.14.0/src'
+make[1]: Leaving directory `/build/buildd-r-bioc-biobase_2.14.0-1-kfreebsd-i386-r1Qsa2/r-bioc-biobase-2.14.0/src'
+installing to /build/buildd-r-bioc-biobase_2.14.0-1-kfreebsd-i386-r1Qsa2/r-bioc-biobase-2.14.0/debian/r-bioc-biobase/usr/lib/R/site-library/Biobase/libs
** R
** data
** inst
@@ -564,20 +565,27 @@ installing to /build/buildd-r-bioc-biobase_2.12.2-1-kfreebsd-i386-sll1Or/r-bioc-
** help
*** installing help indices
** building package indices ...
+*** tangling vignette sources ...
+ 'BiobaseDevelopment.Rnw'
+ 'Bioconductor.Rnw'
+ 'ExpressionSetIntroduction.Rnw'
+ 'HowTo.Rnw'
+ 'Qviews.Rnw'
+ 'esApply.Rnw'
** testing if installed package can be loaded
* DONE (Biobase)
-rm -vf /build/buildd-r-bioc-biobase_2.12.2-1-kfreebsd-i386-sll1Or/r-bioc-biobase-2.12.2/debian/r-bioc-biobase/usr/lib/R/site-library/R.css \
- /build/buildd-r-bioc-biobase_2.12.2-1-kfreebsd-i386-sll1Or/r-bioc-biobase-2.12.2/debian/r-bioc-biobase/usr/lib/R/site-library/Biobase/COPYING \
- /build/buildd-r-bioc-biobase_2.12.2-1-kfreebsd-i386-sll1Or/r-bioc-biobase-2.12.2/debian/r-bioc-biobase/usr/lib/R/site-library/Biobase/LICENSE.txt
+rm -vf /build/buildd-r-bioc-biobase_2.14.0-1-kfreebsd-i386-r1Qsa2/r-bioc-biobase-2.14.0/debian/r-bioc-biobase/usr/lib/R/site-library/R.css \
+ /build/buildd-r-bioc-biobase_2.14.0-1-kfreebsd-i386-r1Qsa2/r-bioc-biobase-2.14.0/debian/r-bioc-biobase/usr/lib/R/site-library/Biobase/COPYING \
+ /build/buildd-r-bioc-biobase_2.14.0-1-kfreebsd-i386-r1Qsa2/r-bioc-biobase-2.14.0/debian/r-bioc-biobase/usr/lib/R/site-library/Biobase/LICENSE.txt
if test -f debian/overrides; then \
- install -d /build/buildd-r-bioc-biobase_2.12.2-1-kfreebsd-i386-sll1Or/r-bioc-biobase-2.12.2/debian/r-bioc-biobase/usr/share/lintian/overrides ; \
+ install -d /build/buildd-r-bioc-biobase_2.14.0-1-kfreebsd-i386-r1Qsa2/r-bioc-biobase-2.14.0/debian/r-bioc-biobase/usr/share/lintian/overrides ; \
install -m 0644 debian/overrides \
- /build/buildd-r-bioc-biobase_2.12.2-1-kfreebsd-i386-sll1Or/r-bioc-biobase-2.12.2/debian/r-bioc-biobase/usr/share/lintian/overrides/r-bioc-biobase; \
+ /build/buildd-r-bioc-biobase_2.14.0-1-kfreebsd-i386-r1Qsa2/r-bioc-biobase-2.14.0/debian/r-bioc-biobase/usr/share/lintian/overrides/r-bioc-biobase; \
fi
Adding cdbs dependencies to debian/r-bioc-biobase.substvars
dh_installdirs -pr-bioc-biobase
-echo "R:Depends=r-base-core (>= 2.13.1~)" >> debian/r-bioc-biobase.substvars
+echo "R:Depends=r-base-core (>= 2.14.0~)" >> debian/r-bioc-biobase.substvars
dh_installdocs -pr-bioc-biobase ./NEWS
dh_installexamples -pr-bioc-biobase
dh_installman -pr-bioc-biobase
@@ -608,58 +616,62 @@ dh_perl -pr-bioc-biobase
dh_shlibdeps -pr-bioc-biobase
dh_gencontrol -pr-bioc-biobase
dh_md5sums -pr-bioc-biobase
-dh_builddeb -pr-bioc-biobase
-dpkg-deb: building package `r-bioc-biobase' in `../r-bioc-biobase_2.12.2-1_kfreebsd-i386.deb'.
- dpkg-genchanges -B -mkfreebsd-i386 Build Daemon (finzi) <buildd_kfreebsd-i386-finzi at buildd.debian.org> >../r-bioc-biobase_2.12.2-1_kfreebsd-i386.changes
+dh_builddeb -pr-bioc-biobase -- -Z xz
+dpkg-deb: building package `r-bioc-biobase' in `../r-bioc-biobase_2.14.0-1_kfreebsd-i386.deb'.
+ dpkg-genchanges -B -mkfreebsd-i386 Build Daemon (field) <buildd_kfreebsd-i386-field at buildd.debian.org> >../r-bioc-biobase_2.14.0-1_kfreebsd-i386.changes
dpkg-genchanges: arch-specific upload - not including arch-independent packages
dpkg-genchanges: binary-only upload - not including any source code
- dpkg-source --after-build r-bioc-biobase-2.12.2
+ dpkg-source --after-build r-bioc-biobase-2.14.0
dpkg-buildpackage: binary only upload (no source included)
────────────────────────────────────────────────────────────────────────────────
-Build finished at 20110804-0030
+Build finished at 20111102-0605
-r-bioc-biobase_2.12.2-1_kfreebsd-i386.changes:
+r-bioc-biobase_2.14.0-1_kfreebsd-i386.changes:
Format: 1.8
-Date: Thu, 04 Aug 2011 08:58:03 +0900
+Date: Wed, 02 Nov 2011 13:52:04 +0900
Source: r-bioc-biobase
Binary: r-bioc-biobase
Architecture: kfreebsd-i386
-Version: 2.12.2-1
+Version: 2.14.0-1
Distribution: sid
Urgency: low
-Maintainer: kfreebsd-i386 Build Daemon (finzi) <buildd_kfreebsd-i386-finzi at buildd.debian.org>
+Maintainer: kfreebsd-i386 Build Daemon (field) <buildd_kfreebsd-i386-field at buildd.debian.org>
Changed-By: Charles Plessy <plessy at debian.org>
Description:
r-bioc-biobase - base functions for Bioconductor
Changes:
- r-bioc-biobase (2.12.2-1) unstable; urgency=low
+ r-bioc-biobase (2.14.0-1) unstable; urgency=low
.
- * New upstream release.
+ [cb6b786] Bioconductor release 2.9.
+ [d70e490] Build-Depend on R >= 2.10 according to DESCRIPTION.
+ [ae99e35] Include 7 digits of the commit id in the changelog entry.
+ [33b5d47] Compress binary package with xz.
Checksums-Sha1:
- 90e9bbf4de498cbf4f32debe5fa203596c154ce5 2666176 r-bioc-biobase_2.12.2-1_kfreebsd-i386.deb
+ 37c2ece696faa218a40d6d0248a7dd23d384435b 2320170 r-bioc-biobase_2.14.0-1_kfreebsd-i386.deb
Checksums-Sha256:
- 2dcd47c50648444ac791851348b61ed0492da695366027f3b9552b1dee20f82c 2666176 r-bioc-biobase_2.12.2-1_kfreebsd-i386.deb
+ ba9bfbb13e74d22ddb711821dbc00627336c95c5b71acb2f1ed8b9d4d3febd4f 2320170 r-bioc-biobase_2.14.0-1_kfreebsd-i386.deb
Files:
- 96e2693c30b6e83360e27d69fdd873b8 2666176 gnu-r optional r-bioc-biobase_2.12.2-1_kfreebsd-i386.deb
+ 91fe2358b75d64b18308d88d015e28a0 2320170 gnu-r optional r-bioc-biobase_2.14.0-1_kfreebsd-i386.deb
┌──────────────────────────────────────────────────────────────────────────────┐
│ Package contents │
└──────────────────────────────────────────────────────────────────────────────┘
-r-bioc-biobase_2.12.2-1_kfreebsd-i386.deb
+r-bioc-biobase_2.14.0-1_kfreebsd-i386.deb
─────────────────────────────────────────
new debian package, version 2.0.
- size 2666176 bytes: control archive= 4951 bytes.
- 1197 bytes, 25 lines control
+ size 2320170 bytes: control archive= 4957 bytes.
+ 1227 bytes, 26 lines control
13314 bytes, 141 lines md5sums
Package: r-bioc-biobase
- Version: 2.12.2-1
+ Version: 2.14.0-1
Architecture: kfreebsd-i386
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
- Installed-Size: 3592
- Depends: libc0.1 (>= 2.3), r-base-core (>= 2.13.1~)
+ Installed-Size: 2961
+ Pre-Depends: dpkg (>= 1.15.6)
+ Depends: libc0.1 (>= 2.3), r-base-core (>= 2.14.0~)
Section: gnu-r
Priority: optional
Homepage: http://www.bioconductor.org
@@ -680,177 +692,177 @@ r-bioc-biobase_2.12.2-1_kfreebsd-i386.deb
unofficial auto-generated Bioconductor packages for Debian and Ubuntu systems,
that are prepared by members of the Debian Med team.
-drwxr-xr-x root/root 0 2011-08-04 00:30 ./
-drwxr-xr-x root/root 0 2011-08-04 00:30 ./usr/
-drwxr-xr-x root/root 0 2011-08-04 00:30 ./usr/lib/
-drwxr-xr-x root/root 0 2011-08-04 00:30 ./usr/lib/R/
-drwxr-xr-x root/root 0 2011-08-04 00:30 ./usr/lib/R/site-library/
-drwxr-xr-x root/root 0 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/
--rw-r--r-- root/root 2870 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/NAMESPACE
--rw-r--r-- root/root 3988 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/NEWS
--rw-r--r-- root/root 1262 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/DESCRIPTION
-drwxr-xr-x root/root 0 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/Meta/
--rw-r--r-- root/root 1025 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/Meta/package.rds
--rw-r--r-- root/root 5637 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/Meta/Rd.rds
--rw-r--r-- root/root 5633 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/Meta/hsearch.rds
--rw-r--r-- root/root 3431 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/Meta/links.rds
--rw-r--r-- root/root 324 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/Meta/data.rds
--rw-r--r-- root/root 475 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/Meta/vignette.rds
--rw-r--r-- root/root 1359 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/Meta/nsInfo.rds
-drwxr-xr-x root/root 0 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/libs/
--rw-r--r-- root/root 18428 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/libs/Biobase.so
-drwxr-xr-x root/root 0 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/R/
--rw-r--r-- root/root 384 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/R/Biobase
--rw-r--r-- root/root 363983 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/R/Biobase.rdb
--rw-r--r-- root/root 8710 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/R/Biobase.rdx
-drwxr-xr-x root/root 0 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/data/
--rw-r--r-- root/root 345999 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/data/SW.rda
--rw-r--r-- root/root 1556 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/data/aaMap.R
--rw-r--r-- root/root 501 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/data/geneCov.R
--rw-r--r-- root/root 435 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/data/geneCovariate.rda
--rw-r--r-- root/root 125627 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/data/geneData.R
--rw-r--r-- root/root 2032 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/data/reporter.rda
--rw-r--r-- root/root 277973 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/data/sample.ExpressionSet.rda
--rw-r--r-- root/root 25217 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/data/sample.MultiSet.rda
--rw-r--r-- root/root 107 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/data/sample.eSet.R
--rw-r--r-- root/root 117 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/data/sample.exprSet.1.R
--rw-r--r-- root/root 115 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/data/sample.exprSet.R
--rw-r--r-- root/root 28463 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/data/seD.rda
-drwxr-xr-x root/root 0 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/Code/
-drwxr-xr-x root/root 0 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/Code/R/
--rw-r--r-- root/root 91 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/Code/R/get at PKGNAME@.R
-drwxr-xr-x root/root 0 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/Code/man/
--rw-r--r-- root/root 487 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/Code/man/@PKGNAME at .Rd
--rw-r--r-- root/root 350 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/Code/man/get at PKGNAME@.Rd
--rw-r--r-- root/root 201 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/Code/DESCRIPTION
-drwxr-xr-x root/root 0 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/ExpressionSet/
-drwxr-xr-x root/root 0 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/ExpressionSet/man/
--rw-r--r-- root/root 180 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/ExpressionSet/man/@PKGNAME at .Rd
--rw-r--r-- root/root 212 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/ExpressionSet/DESCRIPTION
-drwxr-xr-x root/root 0 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/UnitTests/
-drwxr-xr-x root/root 0 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/
-drwxr-xr-x root/root 0 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/1.8/
--rw-r--r-- root/root 939 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/1.8/AnnotatedDataFrame.Rda
--rw-r--r-- root/root 4678 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/1.8/ExpressionSet.Rda
--rw-r--r-- root/root 741 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/1.8/MIAME.Rda
--rw-r--r-- root/root 4588 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/1.8/exprSet.Rda
--rw-r--r-- root/root 943 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/1.8/phenoData.Rda
-drwxr-xr-x root/root 0 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/2.0/
--rw-r--r-- root/root 1014 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/2.0/AnnotatedDataFrame.Rda
--rw-r--r-- root/root 4822 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/2.0/ExpressionSet.Rda
--rw-r--r-- root/root 795 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/2.0/MIAME.Rda
--rw-r--r-- root/root 555 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/2.0/MultiSet.Rda
--rw-r--r-- root/root 113 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/2.0/ScalarCharacter.Rda
--rw-r--r-- root/root 609 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/2.0/SnpSet.Rda
--rw-r--r-- root/root 143 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/2.0/Versioned.Rda
--rw-r--r-- root/root 183 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/2.0/VersionedBiobase.Rda
--rw-r--r-- root/root 105 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/2.0/Versions.Rda
--rw-r--r-- root/root 110 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/2.0/VersionsNull.Rda
--rw-r--r-- root/root 227 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/2.0/aggregator.Rda
--rw-r--r-- root/root 146 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/2.0/container.Rda
--rw-r--r-- root/root 4705 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/2.0/exprSet.Rda
--rw-r--r-- root/root 998 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/2.0/phenoData.Rda
-drwxr-xr-x root/root 0 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/
--rw-r--r-- root/root 1016 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/AnnotatedDataFrame.Rda
--rw-r--r-- root/root 5537 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/ExpressionSet.Rda
--rw-r--r-- root/root 795 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/MIAME.Rda
--rw-r--r-- root/root 1166 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/MultiSet.Rda
--rw-r--r-- root/root 802 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/NChannelSet.Rda
--rw-r--r-- root/root 524 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/SWPD.rda
--rw-r--r-- root/root 113 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/ScalarCharacter.Rda
--rw-r--r-- root/root 1235 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/SnpSet.Rda
--rw-r--r-- root/root 143 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/Versioned.Rda
--rw-r--r-- root/root 183 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/VersionedBiobase.Rda
--rw-r--r-- root/root 105 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/Versions.Rda
--rw-r--r-- root/root 112 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/VersionsNull.Rda
--rw-r--r-- root/root 231 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/aggregator.Rda
--rw-r--r-- root/root 76485 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/bbsym.rda
--rw-r--r-- root/root 146 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/container.Rda
--rw-r--r-- root/root 62201 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/eset.rda
--rw-r--r-- root/root 4704 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/exprSet.Rda
--rw-r--r-- root/root 167662 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/golubMergeSub.rda
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+-rw-r--r-- root/root 705 2011-11-02 06:05 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/raw/pData.tab
+-rw-r--r-- root/root 423 2011-11-02 06:05 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/raw/varMetadata.tab
+-rw-r--r-- root/root 10497 2011-11-02 06:05 ./usr/lib/R/site-library/Biobase/UnitTests/AnnotatedDataFrame_test.R
+-rw-r--r-- root/root 2035 2011-11-02 06:05 ./usr/lib/R/site-library/Biobase/UnitTests/AssayData_test.R
+-rw-r--r-- root/root 629 2011-11-02 06:05 ./usr/lib/R/site-library/Biobase/UnitTests/DataClasses_test.R
+-rw-r--r-- root/root 20153 2011-11-02 06:05 ./usr/lib/R/site-library/Biobase/UnitTests/EsetSubclasses_test.R
+-rw-r--r-- root/root 6194 2011-11-02 06:05 ./usr/lib/R/site-library/Biobase/UnitTests/ExpressionSet_test.R
+-rw-r--r-- root/root 318 2011-11-02 06:05 ./usr/lib/R/site-library/Biobase/UnitTests/Makefile
+-rw-r--r-- root/root 8317 2011-11-02 06:05 ./usr/lib/R/site-library/Biobase/UnitTests/NChannelSet_test.R
+-rw-r--r-- root/root 580 2011-11-02 06:05 ./usr/lib/R/site-library/Biobase/UnitTests/SnpSet_test.R
+-rw-r--r-- root/root 8167 2011-11-02 06:05 ./usr/lib/R/site-library/Biobase/UnitTests/UpdateObject_test.R
+-rw-r--r-- root/root 5015 2011-11-02 06:05 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_test.R
+-rw-r--r-- root/root 951 2011-11-02 06:05 ./usr/lib/R/site-library/Biobase/UnitTests/cache_test.R
+-rw-r--r-- root/root 180 2011-11-02 06:05 ./usr/lib/R/site-library/Biobase/UnitTests/checkClass_test.R
+-rw-r--r-- root/root 2522 2011-11-02 06:05 ./usr/lib/R/site-library/Biobase/UnitTests/combine_test.R
+-rw-r--r-- root/root 403 2011-11-02 06:05 ./usr/lib/R/site-library/Biobase/UnitTests/copyEnv_test.R
+-rw-r--r-- root/root 4598 2011-11-02 06:05 ./usr/lib/R/site-library/Biobase/UnitTests/data.frame_test.R
+-rw-r--r-- root/root 2096 2011-11-02 06:05 ./usr/lib/R/site-library/Biobase/UnitTests/esApply_test.R
+-rwxr-xr-x root/root 39 2011-11-02 06:05 ./usr/lib/R/site-library/Biobase/UnitTests/runall.sh
+-rw-r--r-- root/root 1515 2011-11-02 06:05 ./usr/lib/R/site-library/Biobase/UnitTests/matrix_test.R
+-rw-r--r-- root/root 477 2011-11-02 06:05 ./usr/lib/R/site-library/Biobase/UnitTests/runalltests.R
+-rwxr-xr-x root/root 213 2011-11-02 06:05 ./usr/lib/R/site-library/Biobase/UnitTests/runfile.sh
+-rw-r--r-- root/root 1907 2011-11-02 06:05 ./usr/lib/R/site-library/Biobase/UnitTests/subListExtract_test.R
+-rw-r--r-- root/root 2040 2011-11-02 06:05 ./usr/lib/R/site-library/Biobase/UnitTests/unsaveSetSlot_test.R
+-rw-r--r-- root/root 1257 2011-11-02 06:05 ./usr/lib/R/site-library/Biobase/UnitTests/utilities.R
+drwxr-xr-x root/root 0 2011-11-02 06:05 ./usr/lib/R/site-library/Biobase/doc/
+drwxr-xr-x root/root 0 2011-11-02 06:05 ./usr/lib/R/site-library/Biobase/doc/legacy/
+-rw-r--r-- root/root 13630 2011-11-02 06:05 ./usr/lib/R/site-library/Biobase/doc/legacy/Biobase.Rnw
+-rw-r--r-- root/root 28377 2011-11-02 06:05 ./usr/lib/R/site-library/Biobase/doc/BiobaseDevelopment.Rnw
+-rw-r--r-- root/root 246002 2011-11-02 06:05 ./usr/lib/R/site-library/Biobase/doc/BiobaseDevelopment.pdf
+-rw-r--r-- root/root 3067 2011-11-02 06:05 ./usr/lib/R/site-library/Biobase/doc/Bioconductor.Rnw
+-rw-r--r-- root/root 71355 2011-11-02 06:05 ./usr/lib/R/site-library/Biobase/doc/Bioconductor.pdf
+-rw-r--r-- root/root 18062 2011-11-02 06:05 ./usr/lib/R/site-library/Biobase/doc/ExpressionSetIntroduction.Rnw
+-rw-r--r-- root/root 180675 2011-11-02 06:05 ./usr/lib/R/site-library/Biobase/doc/ExpressionSetIntroduction.pdf
+-rw-r--r-- root/root 3048 2011-11-02 06:05 ./usr/lib/R/site-library/Biobase/doc/HowTo.Rnw
+-rw-r--r-- root/root 56138 2011-11-02 06:05 ./usr/lib/R/site-library/Biobase/doc/HowTo.pdf
+-rw-r--r-- root/root 5030 2011-11-02 06:05 ./usr/lib/R/site-library/Biobase/doc/Qviews.Rnw
+-rw-r--r-- root/root 72358 2011-11-02 06:05 ./usr/lib/R/site-library/Biobase/doc/Qviews.pdf
+-rw-r--r-- root/root 3727 2011-11-02 06:05 ./usr/lib/R/site-library/Biobase/doc/esApply.Rnw
+-rw-r--r-- root/root 103681 2011-11-02 06:05 ./usr/lib/R/site-library/Biobase/doc/esApply.pdf
+-rw-r--r-- root/root 8004 2011-11-02 06:05 ./usr/lib/R/site-library/Biobase/doc/BiobaseDevelopment.R
+-rw-r--r-- root/root 220 2011-11-02 06:05 ./usr/lib/R/site-library/Biobase/doc/Bioconductor.R
+-rw-r--r-- root/root 6628 2011-11-02 06:05 ./usr/lib/R/site-library/Biobase/doc/ExpressionSetIntroduction.R
+-rw-r--r-- root/root 206 2011-11-02 06:05 ./usr/lib/R/site-library/Biobase/doc/HowTo.R
+-rw-r--r-- root/root 3987 2011-11-02 06:05 ./usr/lib/R/site-library/Biobase/doc/Qviews.R
+-rw-r--r-- root/root 1591 2011-11-02 06:05 ./usr/lib/R/site-library/Biobase/doc/esApply.R
+-rw-r--r-- root/root 3428 2011-11-02 06:05 ./usr/lib/R/site-library/Biobase/doc/index.html
+drwxr-xr-x root/root 0 2011-11-02 06:05 ./usr/lib/R/site-library/Biobase/extdata/
+-rw-r--r-- root/root 109039 2011-11-02 06:05 ./usr/lib/R/site-library/Biobase/extdata/exprsData.txt
+-rw-r--r-- root/root 715 2011-11-02 06:05 ./usr/lib/R/site-library/Biobase/extdata/pData.txt
+drwxr-xr-x root/root 0 2011-11-02 06:05 ./usr/lib/R/site-library/Biobase/scripts/
+-rw-r--r-- root/root 774 2011-11-02 06:05 ./usr/lib/R/site-library/Biobase/scripts/esetTesting.R
+-rw-r--r-- root/root 5365 2011-11-02 06:05 ./usr/lib/R/site-library/Biobase/scripts/getBioC.R
+-rw-r--r-- root/root 1213 2011-11-02 06:05 ./usr/lib/R/site-library/Biobase/scripts/getBioCHelp
+-rw-r--r-- root/root 1122 2011-11-02 06:05 ./usr/lib/R/site-library/Biobase/scripts/getBioCPkgNames.R
+-rw-r--r-- root/root 2008 2011-11-02 06:05 ./usr/lib/R/site-library/Biobase/scripts/makeExpressionSetPackage.R
+-rw-r--r-- root/root 6808 2011-11-02 06:05 ./usr/lib/R/site-library/Biobase/scripts/query.packages.R
+-rw-r--r-- root/root 650 2011-11-02 06:05 ./usr/lib/R/site-library/Biobase/CITATION
+-rw-r--r-- root/root 516 2011-11-02 06:05 ./usr/lib/R/site-library/Biobase/testClass.R
+drwxr-xr-x root/root 0 2011-11-02 06:05 ./usr/lib/R/site-library/Biobase/help/
+-rw-r--r-- root/root 857 2011-11-02 06:05 ./usr/lib/R/site-library/Biobase/help/paths.rds
+-rw-r--r-- root/root 244494 2011-11-02 06:05 ./usr/lib/R/site-library/Biobase/help/Biobase.rdb
+-rw-r--r-- root/root 2003 2011-11-02 06:05 ./usr/lib/R/site-library/Biobase/help/Biobase.rdx
+-rw-r--r-- root/root 14948 2011-11-02 06:05 ./usr/lib/R/site-library/Biobase/help/AnIndex
+-rw-r--r-- root/root 3457 2011-11-02 06:05 ./usr/lib/R/site-library/Biobase/help/aliases.rds
+drwxr-xr-x root/root 0 2011-11-02 06:05 ./usr/lib/R/site-library/Biobase/html/
+-rw-r--r-- root/root 53325 2011-11-02 06:05 ./usr/lib/R/site-library/Biobase/html/00Index.html
+-rw-r--r-- root/root 1179 2011-11-02 06:05 ./usr/lib/R/site-library/Biobase/html/R.css
+-rw-r--r-- root/root 6718 2011-11-02 06:05 ./usr/lib/R/site-library/Biobase/INDEX
+drwxr-xr-x root/root 0 2011-11-02 06:05 ./usr/share/
+drwxr-xr-x root/root 0 2011-11-02 06:05 ./usr/share/doc/
+drwxr-xr-x root/root 0 2011-11-02 06:05 ./usr/share/doc/r-bioc-biobase/
+-rw-r--r-- root/root 392 2011-11-02 06:05 ./usr/share/doc/r-bioc-biobase/README.Debian
+-rw-r--r-- root/root 10574 2011-11-02 06:05 ./usr/share/doc/r-bioc-biobase/copyright
+-rw-r--r-- root/root 1380 2011-10-31 23:32 ./usr/share/doc/r-bioc-biobase/NEWS.gz
+-rw-r--r-- root/root 380 2011-11-02 06:05 ./usr/share/doc/r-bioc-biobase/changelog.Debian.gz
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -864,30 +876,30 @@ Built successfully
│ Post Build │
└──────────────────────────────────────────────────────────────────────────────┘
-Purging /var/lib/schroot/mount/sid-ki-sbuild-1312417697-99783/build/buildd-r-bioc-biobase_2.12.2-1-kfreebsd-i386-sll1Or
+Purging /var/lib/schroot/mount/sid-ki-sbuild-1320213685-24117/build/buildd-r-bioc-biobase_2.14.0-1-kfreebsd-i386-r1Qsa2
Reading package lists...
Building dependency tree...
Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 5 not upgraded.
+0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded.
Reading package lists...
Building dependency tree...
Reading state information...
The following packages will be REMOVED:
cdbs* debhelper* dpatch* file* fontconfig* fontconfig-config* gettext*
- gettext-base* gfortran* gfortran-4.6* html2text* intltool-debian*
- libblas-dev* libblas3gf* libbz2-dev* libcairo2* libcroco3* libdatrie1*
- libfontconfig1* libfreetype6* libgfortran3* libglib2.0-0* libice6*
- libjpeg62* libjpeg8* libjpeg8-dev* liblapack-dev* liblapack3gf* libmagic1*
- libncurses5-dev* libpango1.0-0* libpaper-utils* libpaper1* libpcre3*
- libpcre3-dev* libpcrecpp0* libpipeline1* libpixman-1-0* libpng12-dev*
- libreadline-dev* libreadline6-dev* libsm6* libthai-data* libthai0* libtiff4*
+ gettext-base* gfortran* gfortran-4.6* groff-base* html2text*
+ intltool-debian* libblas-dev* libblas3gf* libbz2-dev* libcairo2* libcroco3*
+ libdatrie1* libfontconfig1* libfreetype6* libgfortran3* libglib2.0-0*
+ libice6* libjpeg8* libjpeg8-dev* liblapack-dev* liblapack3gf* libmagic1*
+ libncurses5-dev* libpango1.0-0* libpaper-utils* libpaper1* libpcre3-dev*
+ libpcrecpp0* libpipeline1* libpixman-1-0* libpng12-dev* libreadline-dev*
+ libreadline6-dev* libsm6* libthai-data* libthai0* libtiff4* libtinfo-dev*
libunistring0* libx11-6* libx11-data* libxau6* libxcb-render0* libxcb-shm0*
libxcb1* libxdmcp6* libxext6* libxft2* libxml2* libxrender1* libxss1*
libxt6* man-db* po-debconf* r-base-core* r-base-dev* tcl8.5* tk8.5*
ttf-dejavu-core* ucf* unzip* x11-common* xdg-utils* zip* zlib1g-dev*
-0 upgraded, 0 newly installed, 72 to remove and 5 not upgraded.
-After this operation, 111 MB disk space will be freed.
-(Reading database ... 16131 files and directories currently installed.)
+0 upgraded, 0 newly installed, 72 to remove and 1 not upgraded.
+After this operation, 114 MB disk space will be freed.
+(Reading database ... 15937 files and directories currently installed.)
Removing r-base-dev ...
Removing cdbs ...
Removing debhelper ...
@@ -916,6 +928,10 @@ Removing gettext ...
Removing gettext-base ...
Removing gfortran ...
Removing gfortran-4.6 ...
+Removing man-db ...
+Purging configuration files for man-db ...
+Removing groff-base ...
+Purging configuration files for groff-base ...
Removing html2text ...
Purging configuration files for html2text ...
Removing liblapack-dev ...
@@ -945,13 +961,10 @@ Removing libice6 ...
Purging configuration files for libice6 ...
Removing libtiff4 ...
Purging configuration files for libtiff4 ...
-Removing libjpeg62 ...
Removing libjpeg8-dev ...
Removing libjpeg8 ...
Removing libmagic1 ...
Purging configuration files for libmagic1 ...
-Removing libreadline-dev ...
-Removing libreadline6-dev ...
Removing libncurses5-dev ...
Removing libpaper-utils ...
Removing libpaper1 ...
@@ -959,16 +972,15 @@ Purging configuration files for libpaper1 ...
Removing libpcre3-dev ...
Removing libpcrecpp0 ...
Purging configuration files for libpcrecpp0 ...
-Removing libpcre3 ...
-Purging configuration files for libpcre3 ...
-Removing man-db ...
-Purging configuration files for man-db ...
Removing libpipeline1 ...
Purging configuration files for libpipeline1 ...
Removing libpixman-1-0 ...
Purging configuration files for libpixman-1-0 ...
Removing libpng12-dev ...
+Removing libreadline-dev ...
+Removing libreadline6-dev ...
Removing libthai-data ...
+Removing libtinfo-dev ...
Removing libunistring0 ...
Purging configuration files for libunistring0 ...
Removing libxss1 ...
@@ -1003,7 +1015,6 @@ Removing x11-common ...
All runlevel operations denied by policy
invoke-rc.d: policy-rc.d denied execution of stop.
Purging configuration files for x11-common ...
-dpkg: warning: while removing x11-common, directory '/etc/X11' not empty so not removed.
Removing xdg-utils ...
Removing zip ...
Removing zlib1g-dev ...
@@ -1013,18 +1024,18 @@ Removing zlib1g-dev ...
└──────────────────────────────────────────────────────────────────────────────┘
Architecture: kfreebsd-i386
-Build-Space: 9486
-Build-Time: 34
+Build-Space: 8432
+Build-Time: 30
Distribution: sid
-Install-Time: 85
-Job: r-bioc-biobase_2.12.2-1
+Install-Time: 191
+Job: r-bioc-biobase_2.14.0-1
Package: r-bioc-biobase
-Package-Time: 136
-Source-Version: 2.12.2-1
-Space: 9486
+Package-Time: 246
+Source-Version: 2.14.0-1
+Space: 8432
Status: successful
-Version: 2.12.2-1
+Version: 2.14.0-1
────────────────────────────────────────────────────────────────────────────────
-Finished at 20110804-0030
-Build needed 00:02:16, 9486k disc space
-Signature with key 'C1A6480B' requested:
+Finished at 20111102-0605
+Build needed 00:04:06, 8432k disc space
+Signature with key '6B8016EE' requested:
diff --git a/mips.log b/mips.log
index d30d4fd..be363f0 100644
--- a/mips.log
+++ b/mips.log
@@ -1,67 +1,67 @@
-From buildd at ball.debian.org Thu Aug 04 00:32:07 2011
-Return-path: <buildd at ball.debian.org>
-Received: from kokkonen.debian.org ([2001:41b8:202:deb:1a1a:0:52c3:4b61])
+From buildd2 at corelli.debian.org Wed Nov 02 06:09:04 2011
+Return-path: <buildd2 at corelli.debian.org>
+Received: from merikanto.debian.org ([2001:858:2:2:216:35ff:fec4:a49a])
from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
- CN=kokkonen.debian.org,
- EMAIL=hostmaster at kokkonen.debian.org (verified)
+ CN=merikanto.debian.org,
+ EMAIL=hostmaster at merikanto.debian.org (verified)
by grieg.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
- (Exim 4.72) (envelope-from <buildd at ball.debian.org>)
- id 1Qolr5-00051T-0j
- for logs at buildd.debian.org; Thu, 04 Aug 2011 00:32:07 +0000
-Received: from ball.debian.org ([2001:41b8:202:deb:202:4cff:fefe:d09])
+ (Exim 4.72) (envelope-from <buildd2 at corelli.debian.org>)
+ id 1RLU0V-0008GK-Vl
+ for logs at buildd.debian.org; Wed, 02 Nov 2011 06:09:04 +0000
+Received: from corelli.debian.org ([2607:f8f0:610:4000:2e0:98ff:fe00:4489])
from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
- CN=ball.debian.org, EMAIL=hostmaster at ball.debian.org (verified)
- by kokkonen.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
- (Exim 4.72) (envelope-from <buildd at ball.debian.org>)
- id 1Qolr3-0004QX-G4
- for logs at buildd.debian.org; Thu, 04 Aug 2011 00:32:05 +0000
-Received: from buildd by ball.debian.org with local (Exim 4.72)
- (envelope-from <buildd at ball.debian.org>)
- id 1Qolr2-0006jx-Ib; Thu, 04 Aug 2011 00:32:04 +0000
-Date: Thu, 04 Aug 2011 00:32:04 +0000
-Message-Id: <E1Qolr2-0006jx-Ib at ball.debian.org>
-From: buildd on ball <buildd at ball.debian.org>
-To: logs at buildd.debian.org,buildd-porters at ball.debian.org
-Subject: Log for successful build of r-bioc-biobase_2.12.2-1 on mips (dist=sid)
+ CN=corelli.debian.org, EMAIL=hostmaster at corelli.debian.org (verified)
+ by merikanto.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
+ (Exim 4.72) (envelope-from <buildd2 at corelli.debian.org>)
+ id 1RLU0U-0007tj-0l
+ for logs at buildd.debian.org; Wed, 02 Nov 2011 06:09:02 +0000
+Received: from buildd2 by corelli.debian.org with local (Exim 4.69)
+ (envelope-from <buildd2 at corelli.debian.org>) id 1RLU0R-0007Y5-Hg
+ for logs at buildd.debian.org; Wed, 02 Nov 2011 06:08:59 +0000
+From: buildd on corelli <buildd2 at corelli.debian.org>
+To: logs at buildd.debian.org
+Subject: Log for successful build of r-bioc-biobase_2.14.0-1 on mips (dist=sid)
Content-Type: text/plain; charset=UTF-8
Content-Transfer-Encoding: 8bit
+Message-Id: <E1RLU0R-0007Y5-Hg at corelli.debian.org>
+Date: Wed, 02 Nov 2011 06:08:59 +0000
Delivered-To: logs at buildd.debian.org
-sbuild (Debian sbuild) 0.61.0 (23 Feb 2011) on ball.debian.org
+sbuild (Debian sbuild) 0.61.0 (23 Feb 2011) on corelli.debian.org
╔══════════════════════════════════════════════════════════════════════════════╗
-║ r-bioc-biobase 2.12.2-1 (mips) 04 Aug 2011 00:22 ║
+║ r-bioc-biobase 2.14.0-1 (mips) 02 Nov 2011 05:58 ║
╚══════════════════════════════════════════════════════════════════════════════╝
Package: r-bioc-biobase
-Version: 2.12.2-1
-Source Version: 2.12.2-1
+Version: 2.14.0-1
+Source Version: 2.14.0-1
Architecture: mips
-Get:1 http://ftp.de.debian.org unstable InRelease [146 kB]
+Get:1 http://mirror-ubc.debian.org unstable InRelease [146 kB]
Get:2 http://incoming.debian.org unstable InRelease [146 kB]
-Get:3 http://ftp.de.debian.org unstable/main Sources [5403 kB]
+Get:3 http://mirror-ubc.debian.org unstable/main Sources [5884 kB]
Ign http://incoming.debian.org InRelease
Get:4 http://incoming.debian.org Release.gpg [836 B]
-Get:5 http://incoming.debian.org unstable/main Sources [5403 kB]
-Get:6 http://ftp.de.debian.org unstable/contrib Sources [51.3 kB]
-Get:7 http://ftp.de.debian.org unstable/non-free Sources [96.3 kB]
-Get:8 http://ftp.de.debian.org unstable/main mips Packages [7369 kB]
-Get:9 http://ftp.de.debian.org unstable/contrib mips Packages [53.7 kB]
-Ign http://ftp.de.debian.org unstable/contrib TranslationIndex
-Get:10 http://ftp.de.debian.org unstable/main TranslationIndex [2045 B]
-Ign http://ftp.de.debian.org unstable/contrib Translation-en
-Get:11 http://incoming.debian.org unstable/contrib Sources [51.3 kB]
-Get:12 http://incoming.debian.org unstable/non-free Sources [96.3 kB]
-Get:13 http://incoming.debian.org unstable/main mips Packages [7369 kB]
-Get:14 http://incoming.debian.org unstable/contrib mips Packages [53.7 kB]
+Get:5 http://incoming.debian.org unstable/main Sources [5884 kB]
+Get:6 http://mirror-ubc.debian.org unstable/contrib Sources [56.9 kB]
+Get:7 http://mirror-ubc.debian.org unstable/non-free Sources [104 kB]
+Get:8 http://mirror-ubc.debian.org unstable/main mips Packages [7602 kB]
+Get:9 http://mirror-ubc.debian.org unstable/contrib mips Packages [55.8 kB]
+Ign http://mirror-ubc.debian.org unstable/contrib TranslationIndex
+Get:10 http://mirror-ubc.debian.org unstable/main TranslationIndex [2045 B]
+Ign http://mirror-ubc.debian.org unstable/contrib Translation-en
+Get:11 http://incoming.debian.org unstable/contrib Sources [56.9 kB]
+Get:12 http://incoming.debian.org unstable/non-free Sources [104 kB]
+Get:13 http://incoming.debian.org unstable/main mips Packages [7602 kB]
+Get:14 http://incoming.debian.org unstable/contrib mips Packages [55.8 kB]
Ign http://incoming.debian.org unstable/contrib TranslationIndex
Get:15 http://incoming.debian.org unstable/main TranslationIndex [2045 B]
Get:16 http://incoming.debian.org Release [1604 B]
-Get:17 http://incoming.debian.org Sources [30.7 kB]
-Get:18 http://incoming.debian.org Packages [218 kB]
+Get:17 http://incoming.debian.org Sources [49.2 kB]
+Get:18 http://incoming.debian.org Packages [352 kB]
Ign http://incoming.debian.org unstable/contrib Translation-en
Ign http://incoming.debian.org Translation-en
-Fetched 26.5 MB in 1min 6s (399 kB/s)
+Fetched 28.1 MB in 1min 22s (339 kB/s)
Reading package lists...
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -82,11 +82,11 @@ Building dependency tree...
Reading state information...
NOTICE: 'r-bioc-biobase' packaging is maintained in the 'Git' version control system at:
git://git.debian.org/git/debian-med/r-bioc-biobase.git
-Need to get 2229 kB of source archives.
-Get:1 http://incoming.debian.org/buildd-unstable/ r-bioc-biobase 2.12.2-1 (dsc) [1944 B]
-Get:2 http://incoming.debian.org/buildd-unstable/ r-bioc-biobase 2.12.2-1 (tar) [2222 kB]
-Get:3 http://incoming.debian.org/buildd-unstable/ r-bioc-biobase 2.12.2-1 (diff) [5417 B]
-Fetched 2229 kB in 1s (1297 kB/s)
+Need to get 1934 kB of source archives.
+Get:1 http://incoming.debian.org/buildd-unstable/ r-bioc-biobase 2.14.0-1 (dsc) [2004 B]
+Get:2 http://incoming.debian.org/buildd-unstable/ r-bioc-biobase 2.14.0-1 (tar) [1926 kB]
+Get:3 http://incoming.debian.org/buildd-unstable/ r-bioc-biobase 2.14.0-1 (diff) [5645 B]
+Fetched 1934 kB in 1s (1234 kB/s)
Download complete and in download only mode
Check arch
@@ -100,59 +100,60 @@ Check arch
Build-Depends: build-essential, fakeroot
Checking for already installed dependencies...
build-essential: already installed (11.5)
-fakeroot: already installed (1.16-1)
+fakeroot: already installed (1.18.1-1)
Checking for dependency conflicts...
Installing positive dependencies:
Reading package lists...
Building dependency tree...
Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 27 not upgraded.
+0 upgraded, 0 newly installed, 0 to remove and 33 not upgraded.
Removing negative dependencies:
Reading package lists...
Building dependency tree...
Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 27 not upgraded.
+0 upgraded, 0 newly installed, 0 to remove and 33 not upgraded.
Checking correctness of dependencies...
┌──────────────────────────────────────────────────────────────────────────────┐
│ Install r-bioc-biobase build dependencies (internal resolver) │
└──────────────────────────────────────────────────────────────────────────────┘
-Build-Depends: base-files, base-passwd, bash, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, ncurses-base, ncurses-bin, perl-base, sed, login, sysvinit-utils, sysvinit, tar, bsdutils, mount, util-linux, libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), cdbs, debhelper (>= 8), r-base-dev
+Build-Depends: base-files, base-passwd, bash, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, ncurses-base, ncurses-bin, perl-base, sed, login, sysvinit-utils, sysvinit, tar, bsdutils, mount, util-linux, libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), cdbs, debhelper (>= 8), r-base-dev (>= 2.10)
Checking for already installed dependencies...
-base-files: already installed (6.4)
+base-files: already installed (6.5)
base-passwd: already installed (3.5.23)
bash: already installed (4.1-3)
-coreutils: already installed (8.5-1)
-dash: already installed (0.5.5.1-7.4)
-debianutils: already installed (4.0.2)
+coreutils: already installed (8.13-3)
+dash: already installed (0.5.7-2)
+debianutils: already installed (4.0.4)
diffutils: already installed (1:3.0-1)
-dpkg: already installed (1.16.0.3)
-e2fsprogs: already installed (1.42~WIP-2011-07-02-1)
+dpkg: already installed (1.16.1)
+e2fsprogs: already installed (1.42~WIP-2011-10-09-1)
findutils: already installed (4.4.2-1+b1)
-grep: already installed (2.9-1)
+grep: already installed (2.9-2)
gzip: already installed (1.4-1)
hostname: already installed (3.06)
-ncurses-base: already installed (5.9-1)
-ncurses-bin: already installed (5.9-1)
-perl-base: already installed (5.12.4-1)
+ncurses-base: already installed (5.9-2)
+ncurses-bin: already installed (5.9-2)
+perl-base: already installed (5.12.4-6)
sed: already installed (4.2.1-9)
login: already installed (1:4.1.4.2+svn3283-3)
sysvinit-utils: already installed (2.88dsf-13.11)
sysvinit: already installed (2.88dsf-13.11)
-tar: already installed (1.25-3)
-bsdutils: already installed (1:2.19.1-4)
-mount: already installed (2.19.1-4)
-util-linux: already installed (2.19.1-4)
-libc6-dev: already installed (2.13-10)
-gcc: already installed (4:4.6.1-2 >= 4:4.4.3 is satisfied)
-g++: already installed (4:4.6.1-2 >= 4:4.4.3 is satisfied)
+tar: already installed (1.26-2)
+bsdutils: already installed (1:2.19.1-5)
+mount: already installed (2.19.1-5)
+util-linux: already installed (2.19.1-5)
+libc6-dev: already installed (2.13-21)
+gcc: already installed (4:4.6.1-3 >= 4:4.4.3 is satisfied)
+g++: already installed (4:4.6.1-3 >= 4:4.4.3 is satisfied)
make: already installed (3.81-8.1)
-dpkg-dev: already installed (1.16.0.3 >= 1.13.5 is satisfied)
+dpkg-dev: already installed (1.16.1 >= 1.13.5 is satisfied)
cdbs: missing
debhelper: missing
-Using default version 8.9.3
+Using default version 8.9.8
r-base-dev: missing
+Using default version 2.14.0-1
Checking for dependency conflicts...
Installing positive dependencies: cdbs debhelper r-base-dev
Reading package lists...
@@ -163,15 +164,15 @@ The following extra packages will be installed:
gcc-4.6 gcc-4.6-base gettext gettext-base gfortran gfortran-4.6 groff-base
html2text intltool-debian libblas-dev libblas3gf libbz2-dev libcairo2
libcroco3 libdatrie1 libexpat1 libfontconfig1 libfreetype6 libgcc1
- libgfortran3 libglib2.0-0 libgomp1 libice6 libjpeg62 libjpeg8 libjpeg8-dev
- liblapack-dev liblapack3gf libmagic1 libncurses5-dev libpango1.0-0
+ libgfortran3 libglib2.0-0 libgomp1 libice6 libjpeg8 libjpeg8-dev
+ liblapack-dev liblapack3gf liblzma5 libmagic1 libncurses5-dev libpango1.0-0
libpaper-utils libpaper1 libpcre3 libpcre3-dev libpcrecpp0 libpipeline1
libpixman-1-0 libpng12-0 libpng12-dev libreadline-dev libreadline6-dev
libsm6 libstdc++6 libstdc++6-4.6-dev libthai-data libthai0 libtiff4
- libunistring0 libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0
- libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxrender1 libxss1 libxt6 man-db
- po-debconf r-base-core tcl8.5 tk8.5 ttf-dejavu-core ucf unzip x11-common
- xdg-utils zip zlib1g-dev
+ libtinfo-dev libunistring0 libx11-6 libx11-data libxau6 libxcb-render0
+ libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxrender1 libxss1
+ libxt6 man-db po-debconf r-base-core tcl8.5 tk8.5 ttf-dejavu-core ucf unzip
+ x11-common xdg-utils zip zlib1g-dev
Suggested packages:
wamerican wordlist whois vacation devscripts gcc-4.6-locales dh-make curl
defoma g++-4.6-multilib gcc-4.6-doc libstdc++6-4.6-dbg gcc-4.6-multilib
@@ -189,322 +190,333 @@ The following NEW packages will be installed:
bsdmainutils cdbs debhelper dpatch file fontconfig fontconfig-config gettext
gettext-base gfortran gfortran-4.6 groff-base html2text intltool-debian
libblas-dev libblas3gf libbz2-dev libcairo2 libcroco3 libdatrie1 libexpat1
- libfontconfig1 libfreetype6 libgfortran3 libglib2.0-0 libice6 libjpeg62
- libjpeg8 libjpeg8-dev liblapack-dev liblapack3gf libmagic1 libncurses5-dev
+ libfontconfig1 libfreetype6 libgfortran3 libglib2.0-0 libice6 libjpeg8
+ libjpeg8-dev liblapack-dev liblapack3gf liblzma5 libmagic1 libncurses5-dev
libpango1.0-0 libpaper-utils libpaper1 libpcre3 libpcre3-dev libpcrecpp0
libpipeline1 libpixman-1-0 libpng12-0 libpng12-dev libreadline-dev
- libreadline6-dev libsm6 libthai-data libthai0 libtiff4 libunistring0
- libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6
- libxext6 libxft2 libxml2 libxrender1 libxss1 libxt6 man-db po-debconf
- r-base-core r-base-dev tcl8.5 tk8.5 ttf-dejavu-core ucf unzip x11-common
- xdg-utils zip zlib1g-dev
+ libreadline6-dev libsm6 libthai-data libthai0 libtiff4 libtinfo-dev
+ libunistring0 libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0
+ libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxrender1 libxss1 libxt6 man-db
+ po-debconf r-base-core r-base-dev tcl8.5 tk8.5 ttf-dejavu-core ucf unzip
+ x11-common xdg-utils zip zlib1g-dev
The following packages will be upgraded:
cpp-4.6 g++-4.6 gcc-4.6 gcc-4.6-base libgcc1 libgomp1 libstdc++6
libstdc++6-4.6-dev
-8 upgraded, 76 newly installed, 0 to remove and 19 not upgraded.
-Need to get 67.7 MB of archives.
-After this operation, 127 MB of additional disk space will be used.
-Get:1 http://ftp.de.debian.org/debian/ unstable/main libgomp1 mips 4.6.1-5 [26.2 kB]
-Get:2 http://ftp.de.debian.org/debian/ unstable/main gcc-4.6-base mips 4.6.1-5 [134 kB]
-Get:3 http://ftp.de.debian.org/debian/ unstable/main libgcc1 mips 1:4.6.1-5 [69.6 kB]
-Get:4 http://ftp.de.debian.org/debian/ unstable/main cpp-4.6 mips 4.6.1-5 [3735 kB]
-Get:5 http://ftp.de.debian.org/debian/ unstable/main libstdc++6-4.6-dev mips 4.6.1-5 [1723 kB]
-Get:6 http://ftp.de.debian.org/debian/ unstable/main g++-4.6 mips 4.6.1-5 [6288 kB]
-Get:7 http://ftp.de.debian.org/debian/ unstable/main gcc-4.6 mips 4.6.1-5 [4050 kB]
-Get:8 http://ftp.de.debian.org/debian/ unstable/main libstdc++6 mips 4.6.1-5 [308 kB]
-Get:9 http://ftp.de.debian.org/debian/ unstable/main libpipeline1 mips 1.2.0-3 [35.6 kB]
-Get:10 http://ftp.de.debian.org/debian/ unstable/main libdatrie1 mips 0.2.4-3 [27.0 kB]
-Get:11 http://ftp.de.debian.org/debian/ unstable/main libexpat1 mips 2.0.1-7 [135 kB]
-Get:12 http://ftp.de.debian.org/debian/ unstable/main libfreetype6 mips 2.4.4-2 [397 kB]
-Get:13 http://ftp.de.debian.org/debian/ unstable/main ucf all 3.0025+nmu2 [70.6 kB]
-Get:14 http://ftp.de.debian.org/debian/ unstable/main ttf-dejavu-core all 2.33-1 [1550 kB]
-Get:15 http://ftp.de.debian.org/debian/ unstable/main fontconfig-config all 2.8.0-3 [221 kB]
-Get:16 http://ftp.de.debian.org/debian/ unstable/main libfontconfig1 mips 2.8.0-3 [286 kB]
-Get:17 http://ftp.de.debian.org/debian/ unstable/main libgfortran3 mips 4.6.1-5 [231 kB]
-Get:18 http://ftp.de.debian.org/debian/ unstable/main x11-common all 1:7.6+7 [275 kB]
-Get:19 http://ftp.de.debian.org/debian/ unstable/main libice6 mips 2:1.0.7-2 [50.6 kB]
-Get:20 http://ftp.de.debian.org/debian/ unstable/main libpixman-1-0 mips 0.22.2-1 [339 kB]
-Get:21 http://ftp.de.debian.org/debian/ unstable/main libpng12-0 mips 1.2.46-3 [183 kB]
-Get:22 http://ftp.de.debian.org/debian/ unstable/main libxau6 mips 1:1.0.6-3 [16.6 kB]
-Get:23 http://ftp.de.debian.org/debian/ unstable/main libxdmcp6 mips 1:1.1.0-3 [22.3 kB]
-Get:24 http://ftp.de.debian.org/debian/ unstable/main libxcb1 mips 1.7-3 [38.0 kB]
-Get:25 http://ftp.de.debian.org/debian/ unstable/main libx11-data all 2:1.4.4-1 [183 kB]
-Get:26 http://ftp.de.debian.org/debian/ unstable/main libx11-6 mips 2:1.4.4-1 [858 kB]
-Get:27 http://ftp.de.debian.org/debian/ unstable/main libxcb-render0 mips 1.7-3 [14.5 kB]
-Get:28 http://ftp.de.debian.org/debian/ unstable/main libxcb-shm0 mips 1.7-3 [9354 B]
-Get:29 http://ftp.de.debian.org/debian/ unstable/main libxrender1 mips 1:0.9.6-2 [30.2 kB]
-Get:30 http://ftp.de.debian.org/debian/ unstable/main libcairo2 mips 1.10.2-6 [959 kB]
-Get:31 http://ftp.de.debian.org/debian/ unstable/main libpcre3 mips 8.12-3 [262 kB]
-Get:32 http://ftp.de.debian.org/debian/ unstable/main libglib2.0-0 mips 2.28.6-1 [1509 kB]
-Get:33 http://ftp.de.debian.org/debian/ unstable/main libthai-data all 0.1.15-2 [201 kB]
-Get:34 http://ftp.de.debian.org/debian/ unstable/main libthai0 mips 0.1.15-2 [41.8 kB]
-Get:35 http://ftp.de.debian.org/debian/ unstable/main libxft2 mips 2.2.0-3 [56.7 kB]
-Get:36 http://ftp.de.debian.org/debian/ unstable/main fontconfig mips 2.8.0-3 [334 kB]
-Get:37 http://ftp.de.debian.org/debian/ unstable/main libpango1.0-0 mips 1.28.4-2 [418 kB]
-Get:38 http://ftp.de.debian.org/debian/ unstable/main libsm6 mips 2:1.2.0-2 [28.2 kB]
-Get:39 http://ftp.de.debian.org/debian/ unstable/main libxext6 mips 2:1.3.0-3 [48.4 kB]
-Get:40 http://ftp.de.debian.org/debian/ unstable/main libxt6 mips 1:1.1.1-2 [189 kB]
-Get:41 http://ftp.de.debian.org/debian/ unstable/main bsdmainutils mips 8.2.3 [206 kB]
-Get:42 http://ftp.de.debian.org/debian/ unstable/main groff-base mips 1.21-6 [1152 kB]
-Get:43 http://ftp.de.debian.org/debian/ unstable/main man-db mips 2.6.0.2-2 [990 kB]
-Get:44 http://ftp.de.debian.org/debian/ unstable/main libmagic1 mips 5.04-5+b1 [239 kB]
-Get:45 http://ftp.de.debian.org/debian/ unstable/main file mips 5.04-5+b1 [49.9 kB]
-Get:46 http://ftp.de.debian.org/debian/ unstable/main gettext-base mips 0.18.1.1-3 [153 kB]
-Get:47 http://ftp.de.debian.org/debian/ unstable/main libxml2 mips 2.7.8.dfsg-4 [858 kB]
-Get:48 http://ftp.de.debian.org/debian/ unstable/main html2text mips 1.3.2a-15 [103 kB]
-Get:49 http://ftp.de.debian.org/debian/ unstable/main libcroco3 mips 0.6.2-1 [110 kB]
-Get:50 http://ftp.de.debian.org/debian/ unstable/main libunistring0 mips 0.9.3-4 [415 kB]
-Get:51 http://ftp.de.debian.org/debian/ unstable/main gettext mips 0.18.1.1-3 [2037 kB]
-Get:52 http://ftp.de.debian.org/debian/ unstable/main intltool-debian all 0.35.0+20060710.1 [30.8 kB]
-Get:53 http://ftp.de.debian.org/debian/ unstable/main po-debconf all 1.0.16+nmu1 [223 kB]
-Get:54 http://ftp.de.debian.org/debian/ unstable/main debhelper all 8.9.3 [561 kB]
-Get:55 http://ftp.de.debian.org/debian/ unstable/main cdbs all 0.4.96 [75.8 kB]
-Get:56 http://ftp.de.debian.org/debian/ unstable/main dpatch all 2.0.31 [92.3 kB]
-Get:57 http://ftp.de.debian.org/debian/ unstable/main gfortran-4.6 mips 4.6.1-5 [4367 kB]
-Get:58 http://ftp.de.debian.org/debian/ unstable/main gfortran mips 4:4.6.1-2 [1126 B]
-Get:59 http://ftp.de.debian.org/debian/ unstable/main libblas3gf mips 1.2-8 [210 kB]
-Get:60 http://ftp.de.debian.org/debian/ unstable/main libblas-dev mips 1.2-8 [257 kB]
-Get:61 http://ftp.de.debian.org/debian/ unstable/main libbz2-dev mips 1.0.5-6 [37.9 kB]
-Get:62 http://ftp.de.debian.org/debian/ unstable/main libjpeg62 mips 6b1-2 [92.9 kB]
-Get:63 http://ftp.de.debian.org/debian/ unstable/main libjpeg8 mips 8c-2 [144 kB]
-Get:64 http://ftp.de.debian.org/debian/ unstable/main libjpeg8-dev mips 8c-2 [257 kB]
-Get:65 http://ftp.de.debian.org/debian/ unstable/main liblapack3gf mips 3.3.0-4 [4548 kB]
-Get:66 http://ftp.de.debian.org/debian/ unstable/main liblapack-dev mips 3.3.0-4 [5191 kB]
-Get:67 http://ftp.de.debian.org/debian/ unstable/main libncurses5-dev mips 5.9-1 [509 kB]
-Get:68 http://ftp.de.debian.org/debian/ unstable/main libpaper1 mips 1.1.24+nmu1 [21.3 kB]
-Get:69 http://ftp.de.debian.org/debian/ unstable/main libpaper-utils mips 1.1.24+nmu1 [18.2 kB]
-Get:70 http://ftp.de.debian.org/debian/ unstable/main libpcrecpp0 mips 8.12-3 [113 kB]
-Get:71 http://ftp.de.debian.org/debian/ unstable/main libpcre3-dev mips 8.12-3 [316 kB]
-Get:72 http://ftp.de.debian.org/debian/ unstable/main zlib1g-dev mips 1:1.2.3.4.dfsg-3 [191 kB]
-Get:73 http://ftp.de.debian.org/debian/ unstable/main libpng12-dev mips 1.2.46-3 [275 kB]
-Get:74 http://ftp.de.debian.org/debian/ unstable/main libreadline6-dev mips 6.2-2 [269 kB]
-Get:75 http://ftp.de.debian.org/debian/ unstable/main libreadline-dev mips 6.2-2 [880 B]
-Get:76 http://ftp.de.debian.org/debian/ unstable/main libtiff4 mips 3.9.5-1 [191 kB]
-Get:77 http://ftp.de.debian.org/debian/ unstable/main libxss1 mips 1:1.2.1-1 [16.4 kB]
-Get:78 http://ftp.de.debian.org/debian/ unstable/main zip mips 3.0-4 [332 kB]
-Get:79 http://ftp.de.debian.org/debian/ unstable/main unzip mips 6.0-5 [189 kB]
-Get:80 http://ftp.de.debian.org/debian/ unstable/main xdg-utils all 1.1.0~rc1-2 [70.2 kB]
-Get:81 http://ftp.de.debian.org/debian/ unstable/main tcl8.5 mips 8.5.10-1 [1610 kB]
-Get:82 http://ftp.de.debian.org/debian/ unstable/main tk8.5 mips 8.5.10-1 [1172 kB]
-Get:83 http://ftp.de.debian.org/debian/ unstable/main r-base-core mips 2.13.1-1 [14.6 MB]
-Get:84 http://ftp.de.debian.org/debian/ unstable/main r-base-dev all 2.13.1-1 [3490 B]
+8 upgraded, 77 newly installed, 0 to remove and 25 not upgraded.
+Need to get 71.3 MB of archives.
+After this operation, 123 MB of additional disk space will be used.
+Get:1 http://mirror-ubc.debian.org/debian/ unstable/main libgomp1 mips 4.6.2-3 [26.2 kB]
+Get:2 http://mirror-ubc.debian.org/debian/ unstable/main gcc-4.6-base mips 4.6.2-3 [137 kB]
+Get:3 http://mirror-ubc.debian.org/debian/ unstable/main libgcc1 mips 1:4.6.2-3 [69.5 kB]
+Get:4 http://mirror-ubc.debian.org/debian/ unstable/main cpp-4.6 mips 4.6.2-3 [3760 kB]
+Get:5 http://mirror-ubc.debian.org/debian/ unstable/main libstdc++6-4.6-dev mips 4.6.2-3 [1724 kB]
+Get:6 http://mirror-ubc.debian.org/debian/ unstable/main g++-4.6 mips 4.6.2-3 [6294 kB]
+Get:7 http://mirror-ubc.debian.org/debian/ unstable/main gcc-4.6 mips 4.6.2-3 [4027 kB]
+Get:8 http://mirror-ubc.debian.org/debian/ unstable/main libstdc++6 mips 4.6.2-3 [301 kB]
+Get:9 http://mirror-ubc.debian.org/debian/ unstable/main libpipeline1 mips 1.2.0-4 [35.3 kB]
+Get:10 http://mirror-ubc.debian.org/debian/ unstable/main liblzma5 mips 5.1.1alpha+20110809-3 [204 kB]
+Get:11 http://mirror-ubc.debian.org/debian/ unstable/main libpcre3 mips 8.12-4 [227 kB]
+Get:12 http://mirror-ubc.debian.org/debian/ unstable/main libglib2.0-0 mips 2.28.8-1 [1565 kB]
+Get:13 http://mirror-ubc.debian.org/debian/ unstable/main libxml2 mips 2.7.8.dfsg-5 [858 kB]
+Get:14 http://mirror-ubc.debian.org/debian/ unstable/main libcroco3 mips 0.6.2-2 [104 kB]
+Get:15 http://mirror-ubc.debian.org/debian/ unstable/main libdatrie1 mips 0.2.4-3 [27.0 kB]
+Get:16 http://mirror-ubc.debian.org/debian/ unstable/main libexpat1 mips 2.0.1-7.1 [143 kB]
+Get:17 http://mirror-ubc.debian.org/debian/ unstable/main libfreetype6 mips 2.4.7-2 [421 kB]
+Get:18 http://mirror-ubc.debian.org/debian/ unstable/main ucf all 3.0025+nmu2 [70.6 kB]
+Get:19 http://mirror-ubc.debian.org/debian/ unstable/main ttf-dejavu-core all 2.33-2 [1552 kB]
+Get:20 http://mirror-ubc.debian.org/debian/ unstable/main fontconfig-config all 2.8.0-3 [221 kB]
+Get:21 http://mirror-ubc.debian.org/debian/ unstable/main libfontconfig1 mips 2.8.0-3 [286 kB]
+Get:22 http://mirror-ubc.debian.org/debian/ unstable/main libgfortran3 mips 4.6.2-3 [231 kB]
+Get:23 http://mirror-ubc.debian.org/debian/ unstable/main x11-common all 1:7.6+9 [276 kB]
+Get:24 http://mirror-ubc.debian.org/debian/ unstable/main libice6 mips 2:1.0.7-2 [50.6 kB]
+Get:25 http://mirror-ubc.debian.org/debian/ unstable/main libpixman-1-0 mips 0.23.8-1 [364 kB]
+Get:26 http://mirror-ubc.debian.org/debian/ unstable/main libpng12-0 mips 1.2.46-3 [183 kB]
+Get:27 http://mirror-ubc.debian.org/debian/ unstable/main libxau6 mips 1:1.0.6-3 [16.6 kB]
+Get:28 http://mirror-ubc.debian.org/debian/ unstable/main libxdmcp6 mips 1:1.1.0-3 [22.3 kB]
+Get:29 http://mirror-ubc.debian.org/debian/ unstable/main libxcb1 mips 1.7-3 [38.0 kB]
+Get:30 http://mirror-ubc.debian.org/debian/ unstable/main libx11-data all 2:1.4.4-2 [183 kB]
+Get:31 http://mirror-ubc.debian.org/debian/ unstable/main libx11-6 mips 2:1.4.4-2 [858 kB]
+Get:32 http://mirror-ubc.debian.org/debian/ unstable/main libxcb-render0 mips 1.7-3 [14.5 kB]
+Get:33 http://mirror-ubc.debian.org/debian/ unstable/main libxcb-shm0 mips 1.7-3 [9354 B]
+Get:34 http://mirror-ubc.debian.org/debian/ unstable/main libxrender1 mips 1:0.9.6-2 [30.2 kB]
+Get:35 http://mirror-ubc.debian.org/debian/ unstable/main libcairo2 mips 1.10.2-6.1 [952 kB]
+Get:36 http://mirror-ubc.debian.org/debian/ unstable/main libthai-data all 0.1.15-2 [201 kB]
+Get:37 http://mirror-ubc.debian.org/debian/ unstable/main libthai0 mips 0.1.15-2 [41.8 kB]
+Get:38 http://mirror-ubc.debian.org/debian/ unstable/main libxft2 mips 2.2.0-3 [56.7 kB]
+Get:39 http://mirror-ubc.debian.org/debian/ unstable/main fontconfig mips 2.8.0-3 [334 kB]
+Get:40 http://mirror-ubc.debian.org/debian/ unstable/main libpango1.0-0 mips 1.29.4-2 [434 kB]
+Get:41 http://mirror-ubc.debian.org/debian/ unstable/main libpcrecpp0 mips 8.12-4 [113 kB]
+Get:42 http://mirror-ubc.debian.org/debian/ unstable/main libsm6 mips 2:1.2.0-2 [28.2 kB]
+Get:43 http://mirror-ubc.debian.org/debian/ unstable/main libjpeg8 mips 8c-2 [144 kB]
+Get:44 http://mirror-ubc.debian.org/debian/ unstable/main libtiff4 mips 3.9.5-2 [190 kB]
+Get:45 http://mirror-ubc.debian.org/debian/ unstable/main libunistring0 mips 0.9.3-5 [411 kB]
+Get:46 http://mirror-ubc.debian.org/debian/ unstable/main libxext6 mips 2:1.3.0-3 [48.4 kB]
+Get:47 http://mirror-ubc.debian.org/debian/ unstable/main libxss1 mips 1:1.2.1-2 [16.5 kB]
+Get:48 http://mirror-ubc.debian.org/debian/ unstable/main libxt6 mips 1:1.1.1-2 [189 kB]
+Get:49 http://mirror-ubc.debian.org/debian/ unstable/main bsdmainutils mips 8.2.3 [206 kB]
+Get:50 http://mirror-ubc.debian.org/debian/ unstable/main groff-base mips 1.21-6 [1152 kB]
+Get:51 http://mirror-ubc.debian.org/debian/ unstable/main man-db mips 2.6.0.2-2 [990 kB]
+Get:52 http://mirror-ubc.debian.org/debian/ unstable/main libmagic1 mips 5.09-2 [249 kB]
+Get:53 http://mirror-ubc.debian.org/debian/ unstable/main file mips 5.09-2 [51.8 kB]
+Get:54 http://mirror-ubc.debian.org/debian/ unstable/main gettext-base mips 0.18.1.1-5 [136 kB]
+Get:55 http://mirror-ubc.debian.org/debian/ unstable/main cdbs all 0.4.99 [77.1 kB]
+Get:56 http://mirror-ubc.debian.org/debian/ unstable/main html2text mips 1.3.2a-15 [103 kB]
+Get:57 http://mirror-ubc.debian.org/debian/ unstable/main gettext mips 0.18.1.1-5 [2032 kB]
+Get:58 http://mirror-ubc.debian.org/debian/ unstable/main intltool-debian all 0.35.0+20060710.1 [30.8 kB]
+Get:59 http://mirror-ubc.debian.org/debian/ unstable/main po-debconf all 1.0.16+nmu1 [223 kB]
+Get:60 http://mirror-ubc.debian.org/debian/ unstable/main debhelper all 8.9.8 [552 kB]
+Get:61 http://mirror-ubc.debian.org/debian/ unstable/main dpatch all 2.0.33 [95.9 kB]
+Get:62 http://mirror-ubc.debian.org/debian/ unstable/main gfortran-4.6 mips 4.6.2-3 [4365 kB]
+Get:63 http://mirror-ubc.debian.org/debian/ unstable/main gfortran mips 4:4.6.1-3 [1132 B]
+Get:64 http://mirror-ubc.debian.org/debian/ unstable/main libblas3gf mips 1.2.20110419-2 [203 kB]
+Get:65 http://mirror-ubc.debian.org/debian/ unstable/main libblas-dev mips 1.2.20110419-2 [243 kB]
+Get:66 http://mirror-ubc.debian.org/debian/ unstable/main libbz2-dev mips 1.0.5-7 [37.3 kB]
+Get:67 http://mirror-ubc.debian.org/debian/ unstable/main libjpeg8-dev mips 8c-2 [257 kB]
+Get:68 http://mirror-ubc.debian.org/debian/ unstable/main liblapack3gf mips 3.3.1-1 [4250 kB]
+Get:69 http://mirror-ubc.debian.org/debian/ unstable/main liblapack-dev mips 3.3.1-1 [4908 kB]
+Get:70 http://mirror-ubc.debian.org/debian/ unstable/main libtinfo-dev mips 5.9-2 [71.9 kB]
+Get:71 http://mirror-ubc.debian.org/debian/ unstable/main libncurses5-dev mips 5.9-2 [438 kB]
+Get:72 http://mirror-ubc.debian.org/debian/ unstable/main libpaper1 mips 1.1.24+nmu1 [21.3 kB]
+Get:73 http://mirror-ubc.debian.org/debian/ unstable/main libpaper-utils mips 1.1.24+nmu1 [18.2 kB]
+Get:74 http://mirror-ubc.debian.org/debian/ unstable/main libpcre3-dev mips 8.12-4 [318 kB]
+Get:75 http://mirror-ubc.debian.org/debian/ unstable/main zlib1g-dev mips 1:1.2.3.4.dfsg-3 [191 kB]
+Get:76 http://mirror-ubc.debian.org/debian/ unstable/main libpng12-dev mips 1.2.46-3 [275 kB]
+Get:77 http://mirror-ubc.debian.org/debian/ unstable/main libreadline6-dev mips 6.2-7 [271 kB]
+Get:78 http://mirror-ubc.debian.org/debian/ unstable/main libreadline-dev mips 6.2-7 [890 B]
+Get:79 http://mirror-ubc.debian.org/debian/ unstable/main zip mips 3.0-4 [332 kB]
+Get:80 http://mirror-ubc.debian.org/debian/ unstable/main unzip mips 6.0-5 [189 kB]
+Get:81 http://mirror-ubc.debian.org/debian/ unstable/main xdg-utils all 1.1.0~rc1-2 [70.2 kB]
+Get:82 http://mirror-ubc.debian.org/debian/ unstable/main tcl8.5 mips 8.5.10-1 [1610 kB]
+Get:83 http://mirror-ubc.debian.org/debian/ unstable/main tk8.5 mips 8.5.10-1 [1172 kB]
+Get:84 http://mirror-ubc.debian.org/debian/ unstable/main r-base-core mips 2.14.0-1 [18.6 MB]
+Get:85 http://mirror-ubc.debian.org/debian/ unstable/main r-base-dev all 2.14.0-1 [3488 B]
debconf: delaying package configuration, since apt-utils is not installed
-Fetched 67.7 MB in 17s (3831 kB/s)
-(Reading database ... 10630 files and directories currently installed.)
-Preparing to replace libgomp1 4.6.1-4 (using .../libgomp1_4.6.1-5_mips.deb) ...
+Fetched 71.3 MB in 11s (6073 kB/s)
+(Reading database ... 10552 files and directories currently installed.)
+Preparing to replace libgomp1 4.6.1-15 (using .../libgomp1_4.6.2-3_mips.deb) ...
Unpacking replacement libgomp1 ...
-Preparing to replace gcc-4.6-base 4.6.1-4 (using .../gcc-4.6-base_4.6.1-5_mips.deb) ...
+Preparing to replace gcc-4.6-base 4.6.1-15 (using .../gcc-4.6-base_4.6.2-3_mips.deb) ...
Unpacking replacement gcc-4.6-base ...
-Setting up gcc-4.6-base (4.6.1-5) ...
-(Reading database ... 10630 files and directories currently installed.)
-Preparing to replace libgcc1 1:4.6.1-4 (using .../libgcc1_1%3a4.6.1-5_mips.deb) ...
+Setting up gcc-4.6-base (4.6.2-3) ...
+(Reading database ... 10553 files and directories currently installed.)
+Preparing to replace libgcc1 1:4.6.1-15 (using .../libgcc1_1%3a4.6.2-3_mips.deb) ...
Unpacking replacement libgcc1 ...
-Setting up libgcc1 (1:4.6.1-5) ...
-(Reading database ... 10630 files and directories currently installed.)
-Preparing to replace cpp-4.6 4.6.1-4 (using .../cpp-4.6_4.6.1-5_mips.deb) ...
+Setting up libgcc1 (1:4.6.2-3) ...
+(Reading database ... 10553 files and directories currently installed.)
+Preparing to replace cpp-4.6 4.6.1-15 (using .../cpp-4.6_4.6.2-3_mips.deb) ...
Unpacking replacement cpp-4.6 ...
-Preparing to replace libstdc++6-4.6-dev 4.6.1-4 (using .../libstdc++6-4.6-dev_4.6.1-5_mips.deb) ...
+Preparing to replace libstdc++6-4.6-dev 4.6.1-15 (using .../libstdc++6-4.6-dev_4.6.2-3_mips.deb) ...
Unpacking replacement libstdc++6-4.6-dev ...
-Preparing to replace g++-4.6 4.6.1-4 (using .../g++-4.6_4.6.1-5_mips.deb) ...
+Preparing to replace g++-4.6 4.6.1-15 (using .../g++-4.6_4.6.2-3_mips.deb) ...
Unpacking replacement g++-4.6 ...
-Preparing to replace gcc-4.6 4.6.1-4 (using .../gcc-4.6_4.6.1-5_mips.deb) ...
+Preparing to replace gcc-4.6 4.6.1-15 (using .../gcc-4.6_4.6.2-3_mips.deb) ...
Unpacking replacement gcc-4.6 ...
-Preparing to replace libstdc++6 4.6.1-4 (using .../libstdc++6_4.6.1-5_mips.deb) ...
+Preparing to replace libstdc++6 4.6.1-15 (using .../libstdc++6_4.6.2-3_mips.deb) ...
Unpacking replacement libstdc++6 ...
-Setting up libstdc++6 (4.6.1-5) ...
-Selecting previously deselected package libpipeline1.
-(Reading database ... 10634 files and directories currently installed.)
-Unpacking libpipeline1 (from .../libpipeline1_1.2.0-3_mips.deb) ...
-Selecting previously deselected package libdatrie1.
+Setting up libstdc++6 (4.6.2-3) ...
+Selecting previously unselected package libpipeline1.
+(Reading database ... 10553 files and directories currently installed.)
+Unpacking libpipeline1 (from .../libpipeline1_1.2.0-4_mips.deb) ...
+Selecting previously unselected package liblzma5.
+Unpacking liblzma5 (from .../liblzma5_5.1.1alpha+20110809-3_mips.deb) ...
+Selecting previously unselected package libpcre3.
+Unpacking libpcre3 (from .../libpcre3_8.12-4_mips.deb) ...
+Selecting previously unselected package libglib2.0-0.
+Unpacking libglib2.0-0 (from .../libglib2.0-0_2.28.8-1_mips.deb) ...
+Selecting previously unselected package libxml2.
+Unpacking libxml2 (from .../libxml2_2.7.8.dfsg-5_mips.deb) ...
+Selecting previously unselected package libcroco3.
+Unpacking libcroco3 (from .../libcroco3_0.6.2-2_mips.deb) ...
+Selecting previously unselected package libdatrie1.
Unpacking libdatrie1 (from .../libdatrie1_0.2.4-3_mips.deb) ...
-Selecting previously deselected package libexpat1.
-Unpacking libexpat1 (from .../libexpat1_2.0.1-7_mips.deb) ...
-Selecting previously deselected package libfreetype6.
-Unpacking libfreetype6 (from .../libfreetype6_2.4.4-2_mips.deb) ...
-Selecting previously deselected package ucf.
+Selecting previously unselected package libexpat1.
+Unpacking libexpat1 (from .../libexpat1_2.0.1-7.1_mips.deb) ...
+Selecting previously unselected package libfreetype6.
+Unpacking libfreetype6 (from .../libfreetype6_2.4.7-2_mips.deb) ...
+Selecting previously unselected package ucf.
Unpacking ucf (from .../ucf_3.0025+nmu2_all.deb) ...
Moving old data out of the way
-Selecting previously deselected package ttf-dejavu-core.
-Unpacking ttf-dejavu-core (from .../ttf-dejavu-core_2.33-1_all.deb) ...
-Selecting previously deselected package fontconfig-config.
+Selecting previously unselected package ttf-dejavu-core.
+Unpacking ttf-dejavu-core (from .../ttf-dejavu-core_2.33-2_all.deb) ...
+Selecting previously unselected package fontconfig-config.
Unpacking fontconfig-config (from .../fontconfig-config_2.8.0-3_all.deb) ...
-Selecting previously deselected package libfontconfig1.
+Selecting previously unselected package libfontconfig1.
Unpacking libfontconfig1 (from .../libfontconfig1_2.8.0-3_mips.deb) ...
-Selecting previously deselected package libgfortran3.
-Unpacking libgfortran3 (from .../libgfortran3_4.6.1-5_mips.deb) ...
-Selecting previously deselected package x11-common.
-Unpacking x11-common (from .../x11-common_1%3a7.6+7_all.deb) ...
-Selecting previously deselected package libice6.
+Selecting previously unselected package libgfortran3.
+Unpacking libgfortran3 (from .../libgfortran3_4.6.2-3_mips.deb) ...
+Selecting previously unselected package x11-common.
+Unpacking x11-common (from .../x11-common_1%3a7.6+9_all.deb) ...
+Selecting previously unselected package libice6.
Unpacking libice6 (from .../libice6_2%3a1.0.7-2_mips.deb) ...
-Selecting previously deselected package libpixman-1-0.
-Unpacking libpixman-1-0 (from .../libpixman-1-0_0.22.2-1_mips.deb) ...
-Selecting previously deselected package libpng12-0.
+Selecting previously unselected package libpixman-1-0.
+Unpacking libpixman-1-0 (from .../libpixman-1-0_0.23.8-1_mips.deb) ...
+Selecting previously unselected package libpng12-0.
Unpacking libpng12-0 (from .../libpng12-0_1.2.46-3_mips.deb) ...
-Selecting previously deselected package libxau6.
+Selecting previously unselected package libxau6.
Unpacking libxau6 (from .../libxau6_1%3a1.0.6-3_mips.deb) ...
-Selecting previously deselected package libxdmcp6.
+Selecting previously unselected package libxdmcp6.
Unpacking libxdmcp6 (from .../libxdmcp6_1%3a1.1.0-3_mips.deb) ...
-Selecting previously deselected package libxcb1.
+Selecting previously unselected package libxcb1.
Unpacking libxcb1 (from .../libxcb1_1.7-3_mips.deb) ...
-Selecting previously deselected package libx11-data.
-Unpacking libx11-data (from .../libx11-data_2%3a1.4.4-1_all.deb) ...
-Selecting previously deselected package libx11-6.
-Unpacking libx11-6 (from .../libx11-6_2%3a1.4.4-1_mips.deb) ...
-Selecting previously deselected package libxcb-render0.
+Selecting previously unselected package libx11-data.
+Unpacking libx11-data (from .../libx11-data_2%3a1.4.4-2_all.deb) ...
+Selecting previously unselected package libx11-6.
+Unpacking libx11-6 (from .../libx11-6_2%3a1.4.4-2_mips.deb) ...
+Selecting previously unselected package libxcb-render0.
Unpacking libxcb-render0 (from .../libxcb-render0_1.7-3_mips.deb) ...
-Selecting previously deselected package libxcb-shm0.
+Selecting previously unselected package libxcb-shm0.
Unpacking libxcb-shm0 (from .../libxcb-shm0_1.7-3_mips.deb) ...
-Selecting previously deselected package libxrender1.
+Selecting previously unselected package libxrender1.
Unpacking libxrender1 (from .../libxrender1_1%3a0.9.6-2_mips.deb) ...
-Selecting previously deselected package libcairo2.
-Unpacking libcairo2 (from .../libcairo2_1.10.2-6_mips.deb) ...
-Selecting previously deselected package libpcre3.
-Unpacking libpcre3 (from .../libpcre3_8.12-3_mips.deb) ...
-Selecting previously deselected package libglib2.0-0.
-Unpacking libglib2.0-0 (from .../libglib2.0-0_2.28.6-1_mips.deb) ...
-Selecting previously deselected package libthai-data.
+Selecting previously unselected package libcairo2.
+Unpacking libcairo2 (from .../libcairo2_1.10.2-6.1_mips.deb) ...
+Selecting previously unselected package libthai-data.
Unpacking libthai-data (from .../libthai-data_0.1.15-2_all.deb) ...
-Selecting previously deselected package libthai0.
+Selecting previously unselected package libthai0.
Unpacking libthai0 (from .../libthai0_0.1.15-2_mips.deb) ...
-Selecting previously deselected package libxft2.
+Selecting previously unselected package libxft2.
Unpacking libxft2 (from .../libxft2_2.2.0-3_mips.deb) ...
-Selecting previously deselected package fontconfig.
+Selecting previously unselected package fontconfig.
Unpacking fontconfig (from .../fontconfig_2.8.0-3_mips.deb) ...
-Selecting previously deselected package libpango1.0-0.
-Unpacking libpango1.0-0 (from .../libpango1.0-0_1.28.4-2_mips.deb) ...
-Selecting previously deselected package libsm6.
+Selecting previously unselected package libpango1.0-0.
+Unpacking libpango1.0-0 (from .../libpango1.0-0_1.29.4-2_mips.deb) ...
+Selecting previously unselected package libpcrecpp0.
+Unpacking libpcrecpp0 (from .../libpcrecpp0_8.12-4_mips.deb) ...
+Selecting previously unselected package libsm6.
Unpacking libsm6 (from .../libsm6_2%3a1.2.0-2_mips.deb) ...
-Selecting previously deselected package libxext6.
+Selecting previously unselected package libjpeg8.
+Unpacking libjpeg8 (from .../libjpeg8_8c-2_mips.deb) ...
+Selecting previously unselected package libtiff4.
+Unpacking libtiff4 (from .../libtiff4_3.9.5-2_mips.deb) ...
+Selecting previously unselected package libunistring0.
+Unpacking libunistring0 (from .../libunistring0_0.9.3-5_mips.deb) ...
+Selecting previously unselected package libxext6.
Unpacking libxext6 (from .../libxext6_2%3a1.3.0-3_mips.deb) ...
-Selecting previously deselected package libxt6.
+Selecting previously unselected package libxss1.
+Unpacking libxss1 (from .../libxss1_1%3a1.2.1-2_mips.deb) ...
+Selecting previously unselected package libxt6.
Unpacking libxt6 (from .../libxt6_1%3a1.1.1-2_mips.deb) ...
-Selecting previously deselected package bsdmainutils.
+Selecting previously unselected package bsdmainutils.
Unpacking bsdmainutils (from .../bsdmainutils_8.2.3_mips.deb) ...
-Selecting previously deselected package groff-base.
+Selecting previously unselected package groff-base.
Unpacking groff-base (from .../groff-base_1.21-6_mips.deb) ...
-Selecting previously deselected package man-db.
+Selecting previously unselected package man-db.
Unpacking man-db (from .../man-db_2.6.0.2-2_mips.deb) ...
-Selecting previously deselected package libmagic1.
-Unpacking libmagic1 (from .../libmagic1_5.04-5+b1_mips.deb) ...
-Selecting previously deselected package file.
-Unpacking file (from .../file_5.04-5+b1_mips.deb) ...
-Selecting previously deselected package gettext-base.
-Unpacking gettext-base (from .../gettext-base_0.18.1.1-3_mips.deb) ...
-Selecting previously deselected package libxml2.
-Unpacking libxml2 (from .../libxml2_2.7.8.dfsg-4_mips.deb) ...
-Selecting previously deselected package html2text.
+Selecting previously unselected package libmagic1.
+Unpacking libmagic1 (from .../libmagic1_5.09-2_mips.deb) ...
+Selecting previously unselected package file.
+Unpacking file (from .../archives/file_5.09-2_mips.deb) ...
+Selecting previously unselected package gettext-base.
+Unpacking gettext-base (from .../gettext-base_0.18.1.1-5_mips.deb) ...
+Selecting previously unselected package cdbs.
+Unpacking cdbs (from .../archives/cdbs_0.4.99_all.deb) ...
+Selecting previously unselected package html2text.
Unpacking html2text (from .../html2text_1.3.2a-15_mips.deb) ...
-Selecting previously deselected package libcroco3.
-Unpacking libcroco3 (from .../libcroco3_0.6.2-1_mips.deb) ...
-Selecting previously deselected package libunistring0.
-Unpacking libunistring0 (from .../libunistring0_0.9.3-4_mips.deb) ...
-Selecting previously deselected package gettext.
-Unpacking gettext (from .../gettext_0.18.1.1-3_mips.deb) ...
-Selecting previously deselected package intltool-debian.
+Selecting previously unselected package gettext.
+Unpacking gettext (from .../gettext_0.18.1.1-5_mips.deb) ...
+Selecting previously unselected package intltool-debian.
Unpacking intltool-debian (from .../intltool-debian_0.35.0+20060710.1_all.deb) ...
-Selecting previously deselected package po-debconf.
+Selecting previously unselected package po-debconf.
Unpacking po-debconf (from .../po-debconf_1.0.16+nmu1_all.deb) ...
-Selecting previously deselected package debhelper.
-Unpacking debhelper (from .../debhelper_8.9.3_all.deb) ...
-Selecting previously deselected package cdbs.
-Unpacking cdbs (from .../archives/cdbs_0.4.96_all.deb) ...
-Selecting previously deselected package dpatch.
-Unpacking dpatch (from .../archives/dpatch_2.0.31_all.deb) ...
-Selecting previously deselected package gfortran-4.6.
-Unpacking gfortran-4.6 (from .../gfortran-4.6_4.6.1-5_mips.deb) ...
-Selecting previously deselected package gfortran.
-Unpacking gfortran (from .../gfortran_4%3a4.6.1-2_mips.deb) ...
-Selecting previously deselected package libblas3gf.
-Unpacking libblas3gf (from .../libblas3gf_1.2-8_mips.deb) ...
-Selecting previously deselected package libblas-dev.
-Unpacking libblas-dev (from .../libblas-dev_1.2-8_mips.deb) ...
-Selecting previously deselected package libbz2-dev.
-Unpacking libbz2-dev (from .../libbz2-dev_1.0.5-6_mips.deb) ...
-Selecting previously deselected package libjpeg62.
-Unpacking libjpeg62 (from .../libjpeg62_6b1-2_mips.deb) ...
-Selecting previously deselected package libjpeg8.
-Unpacking libjpeg8 (from .../libjpeg8_8c-2_mips.deb) ...
-Selecting previously deselected package libjpeg8-dev.
+Selecting previously unselected package debhelper.
+Unpacking debhelper (from .../debhelper_8.9.8_all.deb) ...
+Selecting previously unselected package dpatch.
+Unpacking dpatch (from .../archives/dpatch_2.0.33_all.deb) ...
+Selecting previously unselected package gfortran-4.6.
+Unpacking gfortran-4.6 (from .../gfortran-4.6_4.6.2-3_mips.deb) ...
+Selecting previously unselected package gfortran.
+Unpacking gfortran (from .../gfortran_4%3a4.6.1-3_mips.deb) ...
+Selecting previously unselected package libblas3gf.
+Unpacking libblas3gf (from .../libblas3gf_1.2.20110419-2_mips.deb) ...
+Selecting previously unselected package libblas-dev.
+Unpacking libblas-dev (from .../libblas-dev_1.2.20110419-2_mips.deb) ...
+Selecting previously unselected package libbz2-dev.
+Unpacking libbz2-dev (from .../libbz2-dev_1.0.5-7_mips.deb) ...
+Selecting previously unselected package libjpeg8-dev.
Unpacking libjpeg8-dev (from .../libjpeg8-dev_8c-2_mips.deb) ...
-Selecting previously deselected package liblapack3gf.
-Unpacking liblapack3gf (from .../liblapack3gf_3.3.0-4_mips.deb) ...
-Selecting previously deselected package liblapack-dev.
-Unpacking liblapack-dev (from .../liblapack-dev_3.3.0-4_mips.deb) ...
-Selecting previously deselected package libncurses5-dev.
-Unpacking libncurses5-dev (from .../libncurses5-dev_5.9-1_mips.deb) ...
-Selecting previously deselected package libpaper1.
+Selecting previously unselected package liblapack3gf.
+Unpacking liblapack3gf (from .../liblapack3gf_3.3.1-1_mips.deb) ...
+Selecting previously unselected package liblapack-dev.
+Unpacking liblapack-dev (from .../liblapack-dev_3.3.1-1_mips.deb) ...
+Selecting previously unselected package libtinfo-dev.
+Unpacking libtinfo-dev (from .../libtinfo-dev_5.9-2_mips.deb) ...
+Selecting previously unselected package libncurses5-dev.
+Unpacking libncurses5-dev (from .../libncurses5-dev_5.9-2_mips.deb) ...
+Selecting previously unselected package libpaper1.
Unpacking libpaper1 (from .../libpaper1_1.1.24+nmu1_mips.deb) ...
-Selecting previously deselected package libpaper-utils.
+Selecting previously unselected package libpaper-utils.
Unpacking libpaper-utils (from .../libpaper-utils_1.1.24+nmu1_mips.deb) ...
-Selecting previously deselected package libpcrecpp0.
-Unpacking libpcrecpp0 (from .../libpcrecpp0_8.12-3_mips.deb) ...
-Selecting previously deselected package libpcre3-dev.
-Unpacking libpcre3-dev (from .../libpcre3-dev_8.12-3_mips.deb) ...
-Selecting previously deselected package zlib1g-dev.
+Selecting previously unselected package libpcre3-dev.
+Unpacking libpcre3-dev (from .../libpcre3-dev_8.12-4_mips.deb) ...
+Selecting previously unselected package zlib1g-dev.
Unpacking zlib1g-dev (from .../zlib1g-dev_1%3a1.2.3.4.dfsg-3_mips.deb) ...
-Selecting previously deselected package libpng12-dev.
+Selecting previously unselected package libpng12-dev.
Unpacking libpng12-dev (from .../libpng12-dev_1.2.46-3_mips.deb) ...
-Selecting previously deselected package libreadline6-dev.
-Unpacking libreadline6-dev (from .../libreadline6-dev_6.2-2_mips.deb) ...
-Selecting previously deselected package libreadline-dev.
-Unpacking libreadline-dev (from .../libreadline-dev_6.2-2_mips.deb) ...
-Selecting previously deselected package libtiff4.
-Unpacking libtiff4 (from .../libtiff4_3.9.5-1_mips.deb) ...
-Selecting previously deselected package libxss1.
-Unpacking libxss1 (from .../libxss1_1%3a1.2.1-1_mips.deb) ...
-Selecting previously deselected package zip.
+Selecting previously unselected package libreadline6-dev.
+Unpacking libreadline6-dev (from .../libreadline6-dev_6.2-7_mips.deb) ...
+Selecting previously unselected package libreadline-dev.
+Unpacking libreadline-dev (from .../libreadline-dev_6.2-7_mips.deb) ...
+Selecting previously unselected package zip.
Unpacking zip (from .../archives/zip_3.0-4_mips.deb) ...
-Selecting previously deselected package unzip.
+Selecting previously unselected package unzip.
Unpacking unzip (from .../archives/unzip_6.0-5_mips.deb) ...
-Selecting previously deselected package xdg-utils.
+Selecting previously unselected package xdg-utils.
Unpacking xdg-utils (from .../xdg-utils_1.1.0~rc1-2_all.deb) ...
-Selecting previously deselected package tcl8.5.
+Selecting previously unselected package tcl8.5.
Unpacking tcl8.5 (from .../tcl8.5_8.5.10-1_mips.deb) ...
-Selecting previously deselected package tk8.5.
+Selecting previously unselected package tk8.5.
Unpacking tk8.5 (from .../tk8.5_8.5.10-1_mips.deb) ...
-Selecting previously deselected package r-base-core.
-Unpacking r-base-core (from .../r-base-core_2.13.1-1_mips.deb) ...
-Selecting previously deselected package r-base-dev.
-Unpacking r-base-dev (from .../r-base-dev_2.13.1-1_all.deb) ...
-Setting up libgomp1 (4.6.1-5) ...
-Setting up cpp-4.6 (4.6.1-5) ...
-Setting up gcc-4.6 (4.6.1-5) ...
-Setting up libpipeline1 (1.2.0-3) ...
+Selecting previously unselected package r-base-core.
+Unpacking r-base-core (from .../r-base-core_2.14.0-1_mips.deb) ...
+Selecting previously unselected package r-base-dev.
+Unpacking r-base-dev (from .../r-base-dev_2.14.0-1_all.deb) ...
+Setting up libgomp1 (4.6.2-3) ...
+Setting up cpp-4.6 (4.6.2-3) ...
+Setting up gcc-4.6 (4.6.2-3) ...
+Setting up libpipeline1 (1.2.0-4) ...
+Setting up liblzma5 (5.1.1alpha+20110809-3) ...
+Setting up libpcre3 (8.12-4) ...
+Setting up libglib2.0-0 (2.28.8-1) ...
+No schema files found: doing nothing.
+Setting up libxml2 (2.7.8.dfsg-5) ...
+Setting up libcroco3 (0.6.2-2) ...
Setting up libdatrie1 (0.2.4-3) ...
-Setting up libexpat1 (2.0.1-7) ...
-Setting up libfreetype6 (2.4.4-2) ...
+Setting up libexpat1 (2.0.1-7.1) ...
+Setting up libfreetype6 (2.4.7-2) ...
Setting up ucf (3.0025+nmu2) ...
-Setting up ttf-dejavu-core (2.33-1) ...
+Setting up ttf-dejavu-core (2.33-2) ...
Setting up fontconfig-config (2.8.0-3) ...
Setting up libfontconfig1 (2.8.0-3) ...
-Setting up libgfortran3 (4.6.1-5) ...
-Setting up x11-common (1:7.6+7) ...
+Setting up libgfortran3 (4.6.2-3) ...
+Setting up x11-common (1:7.6+9) ...
All runlevel operations denied by policy
invoke-rc.d: policy-rc.d denied execution of start.
Setting up libice6 (2:1.0.7-2) ...
-Setting up libpixman-1-0 (0.22.2-1) ...
+Setting up libpixman-1-0 (0.23.8-1) ...
Setting up libpng12-0 (1.2.46-3) ...
Setting up libxau6 (1:1.0.6-3) ...
Setting up libxdmcp6 (1:1.1.0-3) ...
Setting up libxcb1 (1.7-3) ...
-Setting up libx11-data (2:1.4.4-1) ...
-Setting up libx11-6 (2:1.4.4-1) ...
+Setting up libx11-data (2:1.4.4-2) ...
+Setting up libx11-6 (2:1.4.4-2) ...
Setting up libxcb-render0 (1.7-3) ...
Setting up libxcb-shm0 (1.7-3) ...
Setting up libxrender1 (1:0.9.6-2) ...
-Setting up libcairo2 (1.10.2-6) ...
-Setting up libpcre3 (8.12-3) ...
-Setting up libglib2.0-0 (2.28.6-1) ...
-No schema files found: doing nothing.
+Setting up libcairo2 (1.10.2-6.1) ...
Setting up libthai-data (0.1.15-2) ...
Setting up libthai0 (0.1.15-2) ...
Setting up libxft2 (2.2.0-3) ...
Setting up fontconfig (2.8.0-3) ...
Cleaning up old fontconfig caches... done.
Regenerating fonts cache... done.
-Setting up libpango1.0-0 (1.28.4-2) ...
+Setting up libpango1.0-0 (1.29.4-2) ...
+Setting up libpcrecpp0 (8.12-4) ...
Setting up libsm6 (2:1.2.0-2) ...
+Setting up libjpeg8 (8c-2) ...
+Setting up libtiff4 (3.9.5-2) ...
+Setting up libunistring0 (0.9.3-5) ...
Setting up libxext6 (2:1.3.0-3) ...
+Setting up libxss1 (1:1.2.1-2) ...
Setting up libxt6 (1:1.1.1-2) ...
Setting up bsdmainutils (8.2.3) ...
update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode.
@@ -512,47 +524,40 @@ update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in
Setting up groff-base (1.21-6) ...
Setting up man-db (2.6.0.2-2) ...
Building database of manual pages ...
-Setting up libmagic1 (5.04-5+b1) ...
-Setting up file (5.04-5+b1) ...
-Setting up gettext-base (0.18.1.1-3) ...
-Setting up libxml2 (2.7.8.dfsg-4) ...
+Setting up libmagic1 (5.09-2) ...
+Setting up file (5.09-2) ...
+Setting up gettext-base (0.18.1.1-5) ...
+Setting up cdbs (0.4.99) ...
Setting up html2text (1.3.2a-15) ...
-Setting up libcroco3 (0.6.2-1) ...
-Setting up libunistring0 (0.9.3-4) ...
-Setting up gettext (0.18.1.1-3) ...
+Setting up gettext (0.18.1.1-5) ...
Setting up intltool-debian (0.35.0+20060710.1) ...
Setting up po-debconf (1.0.16+nmu1) ...
-Setting up debhelper (8.9.3) ...
-Setting up cdbs (0.4.96) ...
-Setting up dpatch (2.0.31) ...
-Setting up gfortran-4.6 (4.6.1-5) ...
-Setting up gfortran (4:4.6.1-2) ...
+Setting up debhelper (8.9.8) ...
+Setting up dpatch (2.0.33) ...
+Setting up gfortran-4.6 (4.6.2-3) ...
+Setting up gfortran (4:4.6.1-3) ...
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode.
-Setting up libblas3gf (1.2-8) ...
+Setting up libblas3gf (1.2.20110419-2) ...
update-alternatives: using /usr/lib/libblas/libblas.so.3gf to provide /usr/lib/libblas.so.3gf (libblas.so.3gf) in auto mode.
-Setting up libblas-dev (1.2-8) ...
+Setting up libblas-dev (1.2.20110419-2) ...
update-alternatives: using /usr/lib/libblas/libblas.so to provide /usr/lib/libblas.so (libblas.so) in auto mode.
-Setting up libbz2-dev (1.0.5-6) ...
-Setting up libjpeg62 (6b1-2) ...
-Setting up libjpeg8 (8c-2) ...
+Setting up libbz2-dev (1.0.5-7) ...
Setting up libjpeg8-dev (8c-2) ...
-Setting up liblapack3gf (3.3.0-4) ...
+Setting up liblapack3gf (3.3.1-1) ...
update-alternatives: using /usr/lib/lapack/liblapack.so.3gf to provide /usr/lib/liblapack.so.3gf (liblapack.so.3gf) in auto mode.
-Setting up liblapack-dev (3.3.0-4) ...
+Setting up liblapack-dev (3.3.1-1) ...
update-alternatives: using /usr/lib/lapack/liblapack.so to provide /usr/lib/liblapack.so (liblapack.so) in auto mode.
-Setting up libncurses5-dev (5.9-1) ...
+Setting up libtinfo-dev (5.9-2) ...
+Setting up libncurses5-dev (5.9-2) ...
Setting up libpaper1 (1.1.24+nmu1) ...
Creating config file /etc/papersize with new version
Setting up libpaper-utils (1.1.24+nmu1) ...
-Setting up libpcrecpp0 (8.12-3) ...
-Setting up libpcre3-dev (8.12-3) ...
+Setting up libpcre3-dev (8.12-4) ...
Setting up zlib1g-dev (1:1.2.3.4.dfsg-3) ...
Setting up libpng12-dev (1.2.46-3) ...
-Setting up libreadline6-dev (6.2-2) ...
-Setting up libreadline-dev (6.2-2) ...
-Setting up libtiff4 (3.9.5-1) ...
-Setting up libxss1 (1:1.2.1-1) ...
+Setting up libreadline6-dev (6.2-7) ...
+Setting up libreadline-dev (6.2-7) ...
Setting up zip (3.0-4) ...
Setting up unzip (6.0-5) ...
Setting up xdg-utils (1.1.0~rc1-2) ...
@@ -560,22 +565,22 @@ Setting up tcl8.5 (8.5.10-1) ...
update-alternatives: using /usr/bin/tclsh8.5 to provide /usr/bin/tclsh (tclsh) in auto mode.
Setting up tk8.5 (8.5.10-1) ...
update-alternatives: using /usr/bin/wish8.5 to provide /usr/bin/wish (wish) in auto mode.
-Setting up r-base-core (2.13.1-1) ...
+Setting up r-base-core (2.14.0-1) ...
Setting R_PAPERSIZE_USER default to 'a4'
Creating config file /etc/R/Renviron with new version
-Setting up r-base-dev (2.13.1-1) ...
-Setting up libstdc++6-4.6-dev (4.6.1-5) ...
-Setting up g++-4.6 (4.6.1-5) ...
+Setting up r-base-dev (2.14.0-1) ...
+Setting up libstdc++6-4.6-dev (4.6.2-3) ...
+Setting up g++-4.6 (4.6.2-3) ...
Removing negative dependencies:
Reading package lists...
Building dependency tree...
Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 19 not upgraded.
+0 upgraded, 0 newly installed, 0 to remove and 25 not upgraded.
Checking correctness of dependencies...
-Kernel: Linux 2.6.32-5-sb1-bcm91250a mips (mips64)
-Toolchain package versions: binutils_2.21.52.20110606-2 dpkg-dev_1.16.0.3 g++-4.6_4.6.1-5 gcc-4.6_4.6.1-5 libc6-dev_2.13-10 libstdc++6_4.6.1-5 libstdc++6-4.6-dev_4.6.1-5 linux-libc-dev_2.6.39-3
-Package versions: apt_0.8.15.2 base-files_6.4 base-passwd_3.5.23 bash_4.1-3 binutils_2.21.52.20110606-2 bsdmainutils_8.2.3 bsdutils_1:2.19.1-4 build-essential_11.5 bzip2_1.0.5-6 cdbs_0.4.96 coreutils_8.5-1 cpp_4:4.6.1-2 cpp-4.6_4.6.1-5 dash_0.5.5.1-7.4 debconf_1.5.40 debfoster_2.7-1.1 debhelper_8.9.3 debian-archive-keyring_2010.08.28 debianutils_4.0.2 diffutils_1:3.0-1 dpatch_2.0.31 dpkg_1.16.0.3 dpkg-dev_1.16.0.3 e2fslibs_1.42~WIP-2011-07-02-1 e2fsprogs_1.42~WIP-2011-07-02-1 fakeroot_1.16-1 file_5.04-5+b1 findutils_4.4.2-1+b1 fontconfig_2.8.0-3 fontconfig-config_2.8.0-3 g++_4:4.6.1-2 g++-4.6_4.6.1-5 gcc_4:4.6.1-2 gcc-4.4-base_4.4.6-7 gcc-4.6_4.6.1-5 gcc-4.6-base_4.6.1-5 gettext_0.18.1.1-3 gettext-base_0.18.1.1-3 gfortran_4:4.6.1-2 gfortran-4.6_4.6.1-5 gnupg_1.4.11-3 gpgv_1.4.11-3 grep_2.9-1 groff-base_1.21-6 gzip_1.4-1 hostname_3.06 html2text_1.3.2a-15 initscripts_2.88dsf-13.11 insserv_1.14.0-2.1 intltool-debian_0.35.0+20060710.1 libacl1_2.2.51-3 libattr1_1:2.4.46-3 libblas-dev_1.2-8 libblas3gf_1.2-8 libblkid1_2.19.1-4 libbz2-1.0_1.0.5-6 libbz2-dev_1.0.5-6 libc-bin_2.13-10 libc-dev-bin_2.13-10 libc6_2.13-10 libc6-dev_2.13-10 libcairo2_1.10.2-6 libcloog-ppl0_0.15.9-3 libcomerr2_1.42~WIP-2011-07-02-1 libcroco3_0.6.2-1 libdatrie1_0.2.4-3 libdb5.1_5.1.25-11 libdpkg-perl_1.16.0.3 libexpat1_2.0.1-7 libfontconfig1_2.8.0-3 libfreetype6_2.4.4-2 libgc1c2_1:7.1-8 libgcc1_1:4.6.1-5 libgdbm3_1.8.3-10 libgfortran3_4.6.1-5 libglib2.0-0_2.28.6-1 libgmp10_2:5.0.1+dfsg-7 libgmpxx4ldbl_2:5.0.1+dfsg-7 libgomp1_4.6.1-5 libice6_2:1.0.7-2 libjpeg62_6b1-2 libjpeg8_8c-2 libjpeg8-dev_8c-2 liblapack-dev_3.3.0-4 liblapack3gf_3.3.0-4 liblzma2_5.0.0-2 libmagic1_5.04-5+b1 libmount1_2.19.1-4 libmpc2_0.9-3 libmpfr4_3.0.1-5 libncurses5_5.9-1 libncurses5-dev_5.9-1 libpam-modules_1.1.3-2 libpam-modules-bin_1.1.3-2 libpam-runtime_1.1.3-2 libpam0g_1.1.3-2 libpango1.0-0_1.28.4-2 libpaper-utils_1.1.24+nmu1 libpaper1_1.1.24+nmu1 libpcre3_8.12-3 libpcre3-dev_8.12-3 libpcrecpp0_8.12-3 libpipeline1_1.2.0-3 libpixman-1-0_0.22.2-1 libpng12-0_1.2.46-3 libpng12-dev_1.2.46-3 libppl-c4_0.11.2-4 libppl9_0.11.2-4 libpwl5_0.11.2-4 libreadline-dev_6.2-2 libreadline6_6.2-2 libreadline6-dev_6.2-2 libselinux1_2.0.98-1.1 libsepol1_2.0.42-1 libslang2_2.2.4-2 libsm6_2:1.2.0-2 libss2_1.42~WIP-2011-07-02-1 libstdc++6_4.6.1-5 libstdc++6-4.6-dev_4.6.1-5 libthai-data_0.1.15-2 libthai0_0.1.15-2 libtiff4_3.9.5-1 libtimedate-perl_1.2000-1 libunistring0_0.9.3-4 libusb-0.1-4_2:0.1.12-18 libuuid1_2.19.1-4 libx11-6_2:1.4.4-1 libx11-data_2:1.4.4-1 libxau6_1:1.0.6-3 libxcb-render0_1.7-3 libxcb-shm0_1.7-3 libxcb1_1.7-3 libxdmcp6_1:1.1.0-3 libxext6_2:1.3.0-3 libxft2_2.2.0-3 libxml2_2.7.8.dfsg-4 libxrender1_1:0.9.6-2 libxss1_1:1.2.1-1 libxt6_1:1.1.1-2 linux-libc-dev_2.6.39-3 login_1:4.1.4.2+svn3283-3 lsb-base_3.2-27 make_3.81-8.1 man-db_2.6.0.2-2 mawk_1.3.3-15 mount_2.19.1-4 multiarch-support_2.13-10 ncurses-base_5.9-1 ncurses-bin_5.9-1 passwd_1:4.1.4.2+svn3283-3 patch_2.6.1-2 perl_5.12.4-1 perl-base_5.12.4-1 perl-modules_5.12.4-1 po-debconf_1.0.16+nmu1 r-base-core_2.13.1-1 r-base-dev_2.13.1-1 readline-common_6.2-2 sed_4.2.1-9 sensible-utils_0.0.6 sudo_1.7.4p6-1 sysv-rc_2.88dsf-13.11 sysvinit_2.88dsf-13.11 sysvinit-utils_2.88dsf-13.11 tar_1.25-3 tcl8.5_8.5.10-1 tk8.5_8.5.10-1 ttf-dejavu-core_2.33-1 tzdata_2011h-3 ucf_3.0025+nmu2 unzip_6.0-5 util-linux_2.19.1-4 x11-common_1:7.6+7 xdg-utils_1.1.0~rc1-2 xz-utils_5.0.0-2 zip_3.0-4 zlib1g_1:1.2.3.4.dfsg-3 zlib1g-dev_1:1.2.3.4.dfsg-3
+Kernel: Linux 2.6.35.4-dsa-octeon mips (mips64)
+Toolchain package versions: binutils_2.21.90.20111004-2 dpkg-dev_1.16.1 g++-4.6_4.6.2-3 gcc-4.6_4.6.2-3 libc6-dev_2.13-21 libstdc++6_4.6.2-3 libstdc++6-4.6-dev_4.6.2-3 linux-libc-dev_3.0.0-5
+Package versions: apt_0.8.15.8 base-files_6.5 base-passwd_3.5.23 bash_4.1-3 binutils_2.21.90.20111004-2 bsdmainutils_8.2.3 bsdutils_1:2.19.1-5 build-essential_11.5 bzip2_1.0.5-7 cdbs_0.4.99 coreutils_8.13-3 cpp_4:4.6.1-3 cpp-4.6_4.6.2-3 dash_0.5.7-2 debconf_1.5.41 debfoster_2.7-1.1 debhelper_8.9.8 debian-archive-keyring_2010.08.28 debianutils_4.0.4 diffutils_1:3.0-1 dpatch_2.0.33 dpkg_1.16.1 dpkg-dev_1.16.1 e2fslibs_1.42~WIP-2011-10-09-1 e2fsprogs_1.42~WIP-2011-10-09-1 fakeroot_1.18.1-1 file_5.09-2 findutils_4.4.2-1+b1 fontconfig_2.8.0-3 fontconfig-config_2.8.0-3 g++_4:4.6.1-3 g++-4.6_4.6.2-3 gcc_4:4.6.1-3 gcc-4.6_4.6.2-3 gcc-4.6-base_4.6.2-3 gettext_0.18.1.1-5 gettext-base_0.18.1.1-5 gfortran_4:4.6.1-3 gfortran-4.6_4.6.2-3 gnupg_1.4.11-3 gpgv_1.4.11-3 grep_2.9-2 groff-base_1.21-6 gzip_1.4-1 hostname_3.06 html2text_1.3.2a-15 initscripts_2.88dsf-13.11 insserv_1.14.0-2.1 intltool-debian_0.35.0+20060710.1 libacl1_2.2.51-3 libattr1_1:2.4.46-3 libblas-dev_1.2.20110419-2 libblas3gf_1.2.20110419-2 libblkid1_2.19.1-5 libbz2-1.0_1.0.5-7 libbz2-dev_1.0.5-7 libc-bin_2.13-21 libc-dev-bin_2.13-21 libc6_2.13-21 libc6-dev_2.13-21 libcairo2_1.10.2-6.1 libcomerr2_1.42~WIP-2011-10-09-1 libcroco3_0.6.2-2 libdatrie1_0.2.4-3 libdb5.1_5.1.25-11 libdpkg-perl_1.16.1 libexpat1_2.0.1-7.1 libfontconfig1_2.8.0-3 libfreetype6_2.4.7-2 libgc1c2_1:7.1-8 libgcc1_1:4.6.2-3 libgdbm3_1.8.3-10 libgfortran3_4.6.2-3 libglib2.0-0_2.28.8-1 libgmp10_2:5.0.2+dfsg-1 libgomp1_4.6.2-3 libice6_2:1.0.7-2 libjpeg8_8c-2 libjpeg8-dev_8c-2 liblapack-dev_3.3.1-1 liblapack3gf_3.3.1-1 liblzma2_5.1.1alpha+20110809-2 liblzma5_5.1.1alpha+20110809-3 libmagic1_5.09-2 libmount1_2.19.1-5 libmpc2_0.9-4 libmpfr4_3.1.0-2 libncurses5_5.9-2 libncurses5-dev_5.9-2 libpam-modules_1.1.3-4 libpam-modules-bin_1.1.3-4 libpam-runtime_1.1.3-4 libpam0g_1.1.3-4 libpango1.0-0_1.29.4-2 libpaper-utils_1.1.24+nmu1 libpaper1_1.1.24+nmu1 libpcre3_8.12-4 libpcre3-dev_8.12-4 libpcrecpp0_8.12-4 libpipeline1_1.2.0-4 libpixman-1-0_0.23.8-1 libpng12-0_1.2.46-3 libpng12-dev_1.2.46-3 libreadline-dev_6.2-7 libreadline6_6.2-7 libreadline6-dev_6.2-7 libselinux1_2.1.0-1 libsepol1_2.1.0-1.1 libslang2_2.2.4-3 libsm6_2:1.2.0-2 libss2_1.42~WIP-2011-10-09-1 libstdc++6_4.6.2-3 libstdc++6-4.6-dev_4.6.2-3 libthai-data_0.1.15-2 libthai0_0.1.15-2 libtiff4_3.9.5-2 libtimedate-perl_1.2000-1 libtinfo-dev_5.9-2 libtinfo5_5.9-2 libunistring0_0.9.3-5 libusb-0.1-4_2:0.1.12-19 libuuid1_2.19.1-5 libx11-6_2:1.4.4-2 libx11-data_2:1.4.4-2 libxau6_1:1.0.6-3 libxcb-render0_1.7-3 libxcb-shm0_1.7-3 libxcb1_1.7-3 libxdmcp6_1:1.1.0-3 libxext6_2:1.3.0-3 libxft2_2.2.0-3 libxml2_2.7.8.dfsg-5 libxrender1_1:0.9.6-2 libxss1_1:1.2.1-2 libxt6_1:1.1.1-2 linux-libc-dev_3.0.0-5 login_1:4.1.4.2+svn3283-3 lsb-base_3.2-28 make_3.81-8.1 man-db_2.6.0.2-2 mawk_1.3.3-15 mount_2.19.1-5 multiarch-support_2.13-21 ncurses-base_5.9-2 ncurses-bin_5.9-2 netbase_4.46 passwd_1:4.1.4.2+svn3283-3 patch_2.6.1-2 perl_5.12.4-6 perl-base_5.12.4-6 perl-modules_5.12.4-6 po-debconf_1.0.16+nmu1 r-base-core_2.14.0-1 r-base-dev_2.14.0-1 readline-common_6.2-7 sed_4.2.1-9 sensible-utils_0.0.6 sudo_1.8.2-2 sysv-rc_2.88dsf-13.11 sysvinit_2.88dsf-13.11 sysvinit-utils_2.88dsf-13.11 tar_1.26-2 tcl8.5_8.5.10-1 tk8.5_8.5.10-1 ttf-dejavu-core_2.33-2 tzdata_2011l-1 ucf_3.0025+nmu2 unzip_6.0-5 util-linux_2.19.1-5 x11-common_1:7.6+9 xdg-utils_1.1.0~rc1-2 xz-utils_5.1.1alpha+20110809-2 zip_3.0-4 zlib1g_1:1.2.3.4.dfsg-3 zlib1g-dev_1:1.2.3.4.dfsg-3
┌──────────────────────────────────────────────────────────────────────────────┐
│ Build │
@@ -585,13 +590,13 @@ Package versions: apt_0.8.15.2 base-files_6.4 base-passwd_3.5.23 bash_4.1-3 binu
Unpack source
─────────────
-gpgv: keyblock resource `/home/buildd/.gnupg/trustedkeys.gpg': file open error
-gpgv: Signature made Thu Aug 4 00:12:34 2011 UTC using RSA key ID 2295D502
+gpgv: keyblock resource `/home/buildd2/.gnupg/trustedkeys.gpg': file open error
+gpgv: Signature made Wed Nov 2 05:31:37 2011 UTC using RSA key ID 2295D502
gpgv: Can't check signature: public key not found
-dpkg-source: warning: failed to verify signature on ./r-bioc-biobase_2.12.2-1.dsc
-dpkg-source: info: extracting r-bioc-biobase in r-bioc-biobase-2.12.2
-dpkg-source: info: unpacking r-bioc-biobase_2.12.2.orig.tar.gz
-dpkg-source: info: applying r-bioc-biobase_2.12.2-1.diff.gz
+dpkg-source: warning: failed to verify signature on ./r-bioc-biobase_2.14.0-1.dsc
+dpkg-source: info: extracting r-bioc-biobase in r-bioc-biobase-2.14.0
+dpkg-source: info: unpacking r-bioc-biobase_2.14.0.orig.tar.gz
+dpkg-source: info: applying r-bioc-biobase_2.14.0-1.diff.gz
Check disc space
────────────────
@@ -600,14 +605,14 @@ Check disc space
dpkg-buildpackage
─────────────────
-dpkg-buildpackage: export CFLAGS from dpkg-buildflags (origin: vendor): -g -O2
-dpkg-buildpackage: export CPPFLAGS from dpkg-buildflags (origin: vendor):
-dpkg-buildpackage: export CXXFLAGS from dpkg-buildflags (origin: vendor): -g -O2
-dpkg-buildpackage: export FFLAGS from dpkg-buildflags (origin: vendor): -g -O2
-dpkg-buildpackage: export LDFLAGS from dpkg-buildflags (origin: vendor):
+dpkg-buildpackage: dpkg-buildflags (origin: vendor): CFLAGS = -g -O2 -D_FORTIFY_SOURCE=2 -Wformat -Wformat-security -Werror=format-security
+dpkg-buildpackage: dpkg-buildflags (origin: vendor): CPPFLAGS =
+dpkg-buildpackage: dpkg-buildflags (origin: vendor): CXXFLAGS = -g -O2 -D_FORTIFY_SOURCE=2 -Wformat -Wformat-security -Werror=format-security
+dpkg-buildpackage: dpkg-buildflags (origin: vendor): FFLAGS = -g -O2
+dpkg-buildpackage: dpkg-buildflags (origin: vendor): LDFLAGS = -Wl,-z,relro
dpkg-buildpackage: source package r-bioc-biobase
-dpkg-buildpackage: source version 2.12.2-1
- dpkg-source --before-build r-bioc-biobase-2.12.2
+dpkg-buildpackage: source version 2.14.0-1
+ dpkg-source --before-build r-bioc-biobase-2.14.0
dpkg-buildpackage: host architecture mips
fakeroot debian/rules clean
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
@@ -615,9 +620,9 @@ test -x debian/rules
dh_testroot
/usr/bin/make -f debian/rules reverse-config
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
-make[1]: Entering directory `/build/buildd-r-bioc-biobase_2.12.2-1-mips-boOJHn/r-bioc-biobase-2.12.2'
+make[1]: Entering directory `/build/buildd2-r-bioc-biobase_2.14.0-1-mips-IUmxEh/r-bioc-biobase-2.14.0'
make[1]: Nothing to be done for `reverse-config'.
-make[1]: Leaving directory `/build/buildd-r-bioc-biobase_2.12.2-1-mips-boOJHn/r-bioc-biobase-2.12.2'
+make[1]: Leaving directory `/build/buildd2-r-bioc-biobase_2.14.0-1-mips-IUmxEh/r-bioc-biobase-2.14.0'
if [ "reverse-patches" = "reverse-patches" ]; then rm -f debian/stamp-patched; fi
patches:
if [ "reverse-patches" != "reverse-patches" ]; then touch debian/stamp-patched; fi
@@ -637,21 +642,22 @@ rm -f config.log config.status
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
test -x debian/rules
mkdir -p "."
+/usr/share/cdbs/1/rules/buildcore.mk:109: WARNING: DEB_DH_BUILDDEB_ARGS is a deprecated variable
/usr/bin/make -f debian/rules reverse-config
-make[1]: Entering directory `/build/buildd-r-bioc-biobase_2.12.2-1-mips-boOJHn/r-bioc-biobase-2.12.2'
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
+make[1]: Entering directory `/build/buildd2-r-bioc-biobase_2.14.0-1-mips-IUmxEh/r-bioc-biobase-2.14.0'
make[1]: Nothing to be done for `reverse-config'.
-make[1]: Leaving directory `/build/buildd-r-bioc-biobase_2.12.2-1-mips-boOJHn/r-bioc-biobase-2.12.2'
+make[1]: Leaving directory `/build/buildd2-r-bioc-biobase_2.14.0-1-mips-IUmxEh/r-bioc-biobase-2.14.0'
if [ "debian/stamp-patched" = "reverse-patches" ]; then rm -f debian/stamp-patched; fi
patches:
if [ "debian/stamp-patched" != "reverse-patches" ]; then touch debian/stamp-patched; fi
if [ "debian/stamp-patched" != "reverse-patches" ] ; then \
/usr/bin/make -f debian/rules update-config ; \
fi
-make[1]: Entering directory `/build/buildd-r-bioc-biobase_2.12.2-1-mips-boOJHn/r-bioc-biobase-2.12.2'
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
+make[1]: Entering directory `/build/buildd2-r-bioc-biobase_2.14.0-1-mips-IUmxEh/r-bioc-biobase-2.14.0'
make[1]: Nothing to be done for `update-config'.
-make[1]: Leaving directory `/build/buildd-r-bioc-biobase_2.12.2-1-mips-boOJHn/r-bioc-biobase-2.12.2'
+make[1]: Leaving directory `/build/buildd2-r-bioc-biobase_2.14.0-1-mips-IUmxEh/r-bioc-biobase-2.14.0'
fakeroot debian/rules binary-arch
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
test -x debian/rules
@@ -659,29 +665,30 @@ dh_testroot
dh_prep
dh_installdirs -A
mkdir -p "."
+/usr/share/cdbs/1/rules/buildcore.mk:109: WARNING: DEB_DH_BUILDDEB_ARGS is a deprecated variable
dh_installdirs usr/lib/R/site-library
if test -f /usr/bin/xvfb-run; then \
xvfb-run -a \
- R CMD INSTALL -l /build/buildd-r-bioc-biobase_2.12.2-1-mips-boOJHn/r-bioc-biobase-2.12.2/debian/r-bioc-biobase/usr/lib/R/site-library --clean \
+ R CMD INSTALL -l /build/buildd2-r-bioc-biobase_2.14.0-1-mips-IUmxEh/r-bioc-biobase-2.14.0/debian/r-bioc-biobase/usr/lib/R/site-library --clean \
. ; \
else \
- R CMD INSTALL -l /build/buildd-r-bioc-biobase_2.12.2-1-mips-boOJHn/r-bioc-biobase-2.12.2/debian/r-bioc-biobase/usr/lib/R/site-library \
+ R CMD INSTALL -l /build/buildd2-r-bioc-biobase_2.14.0-1-mips-IUmxEh/r-bioc-biobase-2.14.0/debian/r-bioc-biobase/usr/lib/R/site-library \
--clean . ;\
fi
* installing *source* package 'Biobase' ...
** libs
-make[1]: Entering directory `/build/buildd-r-bioc-biobase_2.12.2-1-mips-boOJHn/r-bioc-biobase-2.12.2/src'
-gcc -I/usr/share/R/include -fpic -std=gnu99 -g0 -g -c Rinit.c -o Rinit.o
-gcc -I/usr/share/R/include -fpic -std=gnu99 -g0 -g -c anyMissing.c -o anyMissing.o
-gcc -I/usr/share/R/include -fpic -std=gnu99 -g0 -g -c envir.c -o envir.o
-gcc -I/usr/share/R/include -fpic -std=gnu99 -g0 -g -c matchpt.c -o matchpt.o
-gcc -I/usr/share/R/include -fpic -std=gnu99 -g0 -g -c rowMedians.c -o rowMedians.o
-gcc -I/usr/share/R/include -fpic -std=gnu99 -g0 -g -c sublist_extract.c -o sublist_extract.o
-gcc -shared -o Biobase.so Rinit.o anyMissing.o envir.o matchpt.o rowMedians.o sublist_extract.o -L/usr/lib/R/lib -lR
-make[1]: Leaving directory `/build/buildd-r-bioc-biobase_2.12.2-1-mips-boOJHn/r-bioc-biobase-2.12.2/src'
-make[1]: Entering directory `/build/buildd-r-bioc-biobase_2.12.2-1-mips-boOJHn/r-bioc-biobase-2.12.2/src'
-make[1]: Leaving directory `/build/buildd-r-bioc-biobase_2.12.2-1-mips-boOJHn/r-bioc-biobase-2.12.2/src'
-installing to /build/buildd-r-bioc-biobase_2.12.2-1-mips-boOJHn/r-bioc-biobase-2.12.2/debian/r-bioc-biobase/usr/lib/R/site-library/Biobase/libs
+make[1]: Entering directory `/build/buildd2-r-bioc-biobase_2.14.0-1-mips-IUmxEh/r-bioc-biobase-2.14.0/src'
+gcc -std=gnu99 -I/usr/share/R/include -fpic -g0 -g -c Rinit.c -o Rinit.o
+gcc -std=gnu99 -I/usr/share/R/include -fpic -g0 -g -c anyMissing.c -o anyMissing.o
+gcc -std=gnu99 -I/usr/share/R/include -fpic -g0 -g -c envir.c -o envir.o
+gcc -std=gnu99 -I/usr/share/R/include -fpic -g0 -g -c matchpt.c -o matchpt.o
+gcc -std=gnu99 -I/usr/share/R/include -fpic -g0 -g -c rowMedians.c -o rowMedians.o
+gcc -std=gnu99 -I/usr/share/R/include -fpic -g0 -g -c sublist_extract.c -o sublist_extract.o
+gcc -std=gnu99 -shared -o Biobase.so Rinit.o anyMissing.o envir.o matchpt.o rowMedians.o sublist_extract.o -L/usr/lib/R/lib -lR
+make[1]: Leaving directory `/build/buildd2-r-bioc-biobase_2.14.0-1-mips-IUmxEh/r-bioc-biobase-2.14.0/src'
+make[1]: Entering directory `/build/buildd2-r-bioc-biobase_2.14.0-1-mips-IUmxEh/r-bioc-biobase-2.14.0/src'
+make[1]: Leaving directory `/build/buildd2-r-bioc-biobase_2.14.0-1-mips-IUmxEh/r-bioc-biobase-2.14.0/src'
+installing to /build/buildd2-r-bioc-biobase_2.14.0-1-mips-IUmxEh/r-bioc-biobase-2.14.0/debian/r-bioc-biobase/usr/lib/R/site-library/Biobase/libs
** R
** data
** inst
@@ -689,20 +696,27 @@ installing to /build/buildd-r-bioc-biobase_2.12.2-1-mips-boOJHn/r-bioc-biobase-2
** help
*** installing help indices
** building package indices ...
+*** tangling vignette sources ...
+ 'BiobaseDevelopment.Rnw'
+ 'Bioconductor.Rnw'
+ 'ExpressionSetIntroduction.Rnw'
+ 'HowTo.Rnw'
+ 'Qviews.Rnw'
+ 'esApply.Rnw'
** testing if installed package can be loaded
* DONE (Biobase)
-rm -vf /build/buildd-r-bioc-biobase_2.12.2-1-mips-boOJHn/r-bioc-biobase-2.12.2/debian/r-bioc-biobase/usr/lib/R/site-library/R.css \
- /build/buildd-r-bioc-biobase_2.12.2-1-mips-boOJHn/r-bioc-biobase-2.12.2/debian/r-bioc-biobase/usr/lib/R/site-library/Biobase/COPYING \
- /build/buildd-r-bioc-biobase_2.12.2-1-mips-boOJHn/r-bioc-biobase-2.12.2/debian/r-bioc-biobase/usr/lib/R/site-library/Biobase/LICENSE.txt
+rm -vf /build/buildd2-r-bioc-biobase_2.14.0-1-mips-IUmxEh/r-bioc-biobase-2.14.0/debian/r-bioc-biobase/usr/lib/R/site-library/R.css \
+ /build/buildd2-r-bioc-biobase_2.14.0-1-mips-IUmxEh/r-bioc-biobase-2.14.0/debian/r-bioc-biobase/usr/lib/R/site-library/Biobase/COPYING \
+ /build/buildd2-r-bioc-biobase_2.14.0-1-mips-IUmxEh/r-bioc-biobase-2.14.0/debian/r-bioc-biobase/usr/lib/R/site-library/Biobase/LICENSE.txt
if test -f debian/overrides; then \
- install -d /build/buildd-r-bioc-biobase_2.12.2-1-mips-boOJHn/r-bioc-biobase-2.12.2/debian/r-bioc-biobase/usr/share/lintian/overrides ; \
+ install -d /build/buildd2-r-bioc-biobase_2.14.0-1-mips-IUmxEh/r-bioc-biobase-2.14.0/debian/r-bioc-biobase/usr/share/lintian/overrides ; \
install -m 0644 debian/overrides \
- /build/buildd-r-bioc-biobase_2.12.2-1-mips-boOJHn/r-bioc-biobase-2.12.2/debian/r-bioc-biobase/usr/share/lintian/overrides/r-bioc-biobase; \
+ /build/buildd2-r-bioc-biobase_2.14.0-1-mips-IUmxEh/r-bioc-biobase-2.14.0/debian/r-bioc-biobase/usr/share/lintian/overrides/r-bioc-biobase; \
fi
Adding cdbs dependencies to debian/r-bioc-biobase.substvars
dh_installdirs -pr-bioc-biobase
-echo "R:Depends=r-base-core (>= 2.13.1~)" >> debian/r-bioc-biobase.substvars
+echo "R:Depends=r-base-core (>= 2.14.0~)" >> debian/r-bioc-biobase.substvars
dh_installdocs -pr-bioc-biobase ./NEWS
dh_installexamples -pr-bioc-biobase
dh_installman -pr-bioc-biobase
@@ -733,58 +747,62 @@ dh_perl -pr-bioc-biobase
dh_shlibdeps -pr-bioc-biobase
dh_gencontrol -pr-bioc-biobase
dh_md5sums -pr-bioc-biobase
-dh_builddeb -pr-bioc-biobase
-dpkg-deb: building package `r-bioc-biobase' in `../r-bioc-biobase_2.12.2-1_mips.deb'.
- dpkg-genchanges -B -mDebian Build Daemon <buildd_mips-ball at buildd.debian.org> >../r-bioc-biobase_2.12.2-1_mips.changes
+dh_builddeb -pr-bioc-biobase -- -Z xz
+dpkg-deb: building package `r-bioc-biobase' in `../r-bioc-biobase_2.14.0-1_mips.deb'.
+ dpkg-genchanges -B -mmips Build Daemon (corelli) <buildd_mips-corelli2 at buildd.debian.org> >../r-bioc-biobase_2.14.0-1_mips.changes
dpkg-genchanges: arch-specific upload - not including arch-independent packages
dpkg-genchanges: binary-only upload - not including any source code
- dpkg-source --after-build r-bioc-biobase-2.12.2
+ dpkg-source --after-build r-bioc-biobase-2.14.0
dpkg-buildpackage: binary only upload (no source included)
────────────────────────────────────────────────────────────────────────────────
-Build finished at 20110804-0031
+Build finished at 20111102-0608
-r-bioc-biobase_2.12.2-1_mips.changes:
+r-bioc-biobase_2.14.0-1_mips.changes:
Format: 1.8
-Date: Thu, 04 Aug 2011 08:58:03 +0900
+Date: Wed, 02 Nov 2011 13:52:04 +0900
Source: r-bioc-biobase
Binary: r-bioc-biobase
Architecture: mips
-Version: 2.12.2-1
+Version: 2.14.0-1
Distribution: sid
Urgency: low
-Maintainer: Debian Build Daemon <buildd_mips-ball at buildd.debian.org>
+Maintainer: mips Build Daemon (corelli) <buildd_mips-corelli2 at buildd.debian.org>
Changed-By: Charles Plessy <plessy at debian.org>
Description:
r-bioc-biobase - base functions for Bioconductor
Changes:
- r-bioc-biobase (2.12.2-1) unstable; urgency=low
+ r-bioc-biobase (2.14.0-1) unstable; urgency=low
.
- * New upstream release.
+ [cb6b786] Bioconductor release 2.9.
+ [d70e490] Build-Depend on R >= 2.10 according to DESCRIPTION.
+ [ae99e35] Include 7 digits of the commit id in the changelog entry.
+ [33b5d47] Compress binary package with xz.
Checksums-Sha1:
- d3e0ac0da5f5dd1a487c2c2a783cfcb71bacd60e 2660958 r-bioc-biobase_2.12.2-1_mips.deb
+ c21d0b88e870f587b22b026ca250b8c486a85d61 2315460 r-bioc-biobase_2.14.0-1_mips.deb
Checksums-Sha256:
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+ f7900ab3a32bdf3fe25092c7ad1df3fcd146007dd3f3907a2fdf3448cc6bb5f7 2315460 r-bioc-biobase_2.14.0-1_mips.deb
Files:
- 4b05a1c143910c2caf7c6011ddeb9e38 2660958 gnu-r optional r-bioc-biobase_2.12.2-1_mips.deb
+ f2544885c4544c65dcda123d38ec6e3e 2315460 gnu-r optional r-bioc-biobase_2.14.0-1_mips.deb
┌──────────────────────────────────────────────────────────────────────────────┐
│ Package contents │
└──────────────────────────────────────────────────────────────────────────────┘
-r-bioc-biobase_2.12.2-1_mips.deb
+r-bioc-biobase_2.14.0-1_mips.deb
────────────────────────────────
new debian package, version 2.0.
- size 2660958 bytes: control archive= 4937 bytes.
- 1186 bytes, 25 lines control
+ size 2315460 bytes: control archive= 4959 bytes.
+ 1216 bytes, 26 lines control
13314 bytes, 141 lines md5sums
Package: r-bioc-biobase
- Version: 2.12.2-1
+ Version: 2.14.0-1
Architecture: mips
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
- Installed-Size: 3804
- Depends: libc6 (>= 2.2), r-base-core (>= 2.13.1~)
+ Installed-Size: 3074
+ Pre-Depends: dpkg (>= 1.15.6)
+ Depends: libc6 (>= 2.2), r-base-core (>= 2.14.0~)
Section: gnu-r
Priority: optional
Homepage: http://www.bioconductor.org
@@ -805,177 +823,7 @@ r-bioc-biobase_2.12.2-1_mips.deb
unofficial auto-generated Bioconductor packages for Debian and Ubuntu systems,
that are prepared by members of the Debian Med team.
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--rw-r--r-- root/root 345999 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/data/SW.rda
--rw-r--r-- root/root 277973 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/data/sample.ExpressionSet.rda
--rw-r--r-- root/root 107 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/data/sample.eSet.R
-drwxr-xr-x root/root 0 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/ExpressionSet/
-drwxr-xr-x root/root 0 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/ExpressionSet/man/
--rw-r--r-- root/root 180 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/ExpressionSet/man/@PKGNAME at .Rd
--rw-r--r-- root/root 212 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/ExpressionSet/DESCRIPTION
--rw-r--r-- root/root 1264 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/DESCRIPTION
-drwxr-xr-x root/root 0 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/scripts/
--rw-r--r-- root/root 1122 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/scripts/getBioCPkgNames.R
--rw-r--r-- root/root 1213 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/scripts/getBioCHelp
--rw-r--r-- root/root 2008 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/scripts/makeExpressionSetPackage.R
--rw-r--r-- root/root 774 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/scripts/esetTesting.R
--rw-r--r-- root/root 6808 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/scripts/query.packages.R
--rw-r--r-- root/root 5365 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/scripts/getBioC.R
--rw-r--r-- root/root 3988 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/NEWS
--rw-r--r-- root/root 2870 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/NAMESPACE
+dpkg-deb: file `/var/lib/schroot/mount/sid-mips-sbuild-f6e94546-2be8-4259-9506-565eaec21998/build/buildd2-r-bioc-biobase_2.14.0-1-mips-IUmxEh/r-bioc-biobase_2.14.0-1_mips.deb' contains ununderstood data member data.tar.xz , giving up
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -989,91 +837,97 @@ Built successfully
│ Post Build │
└──────────────────────────────────────────────────────────────────────────────┘
-Purging /var/lib/schroot/mount/sid-mips-sbuild-350e28e0-7825-449f-8cc7-80d664adfdce/build/buildd-r-bioc-biobase_2.12.2-1-mips-boOJHn
+Purging /var/lib/schroot/mount/sid-mips-sbuild-f6e94546-2be8-4259-9506-565eaec21998/build/buildd2-r-bioc-biobase_2.14.0-1-mips-IUmxEh
Not cleaning session: cloned chroot in use
+Can't open average time db /var/lib/sbuild/avg-build-times
+Can't open average space db /var/lib/sbuild/avg-build-space
┌──────────────────────────────────────────────────────────────────────────────┐
│ Summary │
└──────────────────────────────────────────────────────────────────────────────┘
Architecture: mips
-Build-Space: 10092
-Build-Time: 140
+Build-Space: 9148
+Build-Time: 267
Distribution: sid
-Install-Time: 291
-Job: r-bioc-biobase_2.12.2-1
+Install-Time: 245
+Job: r-bioc-biobase_2.14.0-1
Package: r-bioc-biobase
-Package-Time: 552
-Source-Version: 2.12.2-1
-Space: 10092
+Package-Time: 640
+Source-Version: 2.14.0-1
+Space: 9148
Status: successful
-Version: 2.12.2-1
+Version: 2.14.0-1
────────────────────────────────────────────────────────────────────────────────
-Finished at 20110804-0031
-Build needed 00:09:12, 10092k disc space
-Signature with key '2D578AB1' requested:
-
-From buildd at phrixos.ayous.org Thu Aug 04 00:32:24 2011
-Return-path: <buildd at phrixos.ayous.org>
-Received: from phrixos.ayous.org ([2001:a60:f006:deb:223:9eff:fe00:f7c]
- helo=alius.ayous.org)
+Finished at 20111102-0608
+Build needed 00:10:40, 9148k disc space
+Signature with key '4D9CC026' requested:
+
+From buildd at eysler.debian.org Wed Nov 02 07:28:56 2011
+Return-path: <buildd at eysler.debian.org>
+Received: from kokkonen.debian.org ([2001:41b8:202:deb:1a1a:0:52c3:4b61])
+ from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
+ CN=kokkonen.debian.org,
+ EMAIL=hostmaster at kokkonen.debian.org (verified)
by grieg.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
- (Exim 4.72) (envelope-from <buildd at phrixos.ayous.org>)
- id 1QolrJ-00057F-2N
- for logs at buildd.debian.org; Thu, 04 Aug 2011 00:32:24 +0000
-Received: from buildd by phrixos.ayous.org with local (Exim 4.72)
- (envelope-from <buildd at phrixos.ayous.org>)
- id 1QolrF-0007Mg-Ku; Thu, 04 Aug 2011 00:32:17 +0000
-Date: Thu, 04 Aug 2011 00:32:17 +0000
-Message-Id: <E1QolrF-0007Mg-Ku at phrixos.ayous.org>
-From: buildd on phrixos <buildd at phrixos.ayous.org>
-To: aba+buildd_phrixos at not.so.argh.org,logs at buildd.debian.org
-Subject: Log for successful build of r-bioc-biobase_2.12.2-1 on mipsel
+ (Exim 4.72) (envelope-from <buildd at eysler.debian.org>)
+ id 1RLVFo-0004rV-2O
+ for logs at buildd.debian.org; Wed, 02 Nov 2011 07:28:56 +0000
+Received: from eysler.debian.org ([2001:858:2:2:1a1a:0:563b:7698])
+ from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
+ CN=eysler.debian.org, EMAIL=hostmaster at eysler.debian.org (verified)
+ by kokkonen.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
+ (Exim 4.72) (envelope-from <buildd at eysler.debian.org>)
+ id 1RLVFn-0000Wg-2m
+ for logs at buildd.debian.org; Wed, 02 Nov 2011 07:28:55 +0000
+Received: from buildd by eysler.debian.org with local (Exim 4.72)
+ (envelope-from <buildd at eysler.debian.org>) id 1RLVFs-0007O4-6i
+ for logs at buildd.debian.org; Wed, 02 Nov 2011 07:29:00 +0000
+Date: Wed, 02 Nov 2011 07:29:00 +0000
+Message-Id: <E1RLVFs-0007O4-6i at eysler.debian.org>
+From: buildd on eysler <buildd at eysler.debian.org>
+To: logs at buildd.debian.org
+Subject: Log for successful build of r-bioc-biobase_2.14.0-1 on mipsel
(dist=sid)
Content-Type: text/plain; charset=UTF-8
Content-Transfer-Encoding: 8bit
Delivered-To: logs at buildd.debian.org
-sbuild (Debian sbuild) 0.60.0 (23 Feb 2010) on phrixos.ayous.org
+sbuild (Debian sbuild) 0.61.0 (23 Feb 2011) on eysler.debian.org
╔══════════════════════════════════════════════════════════════════════════════╗
-║ r-bioc-biobase 2.12.2-1 (mipsel) 04 Aug 2011 00:23 ║
+║ r-bioc-biobase 2.14.0-1 (mipsel) 02 Nov 2011 07:20 ║
╚══════════════════════════════════════════════════════════════════════════════╝
Package: r-bioc-biobase
-Version: 2.12.2-1
+Version: 2.14.0-1
+Source Version: 2.14.0-1
Architecture: mipsel
-Chroot Build Dir: /var/lib/schroot/mount/sid-mipsel-sbuild-4967957a-d166-4db3-bea7-f133e9169010/build/buildd-r-bioc-biobase_2.12.2-1-mipsel-VAOhJw
-Start Time: 20110804-0023
-Ign http://incoming.debian.org unstable InRelease
+Get:1 http://ftp.at.debian.org unstable InRelease [146 kB]
+Get:2 http://incoming.debian.org unstable InRelease [146 kB]
+Get:3 http://ftp.at.debian.org unstable/main Sources [5884 kB]
Ign http://incoming.debian.org InRelease
-Ign http://mirror.ayous.org unstable InRelease
-Get:1 http://incoming.debian.org unstable Release.gpg [836 B]
-Get:2 http://mirror.ayous.org unstable Release.gpg [836 B]
-Get:3 http://mirror.ayous.org unstable Release [145 kB]
Get:4 http://incoming.debian.org Release.gpg [836 B]
-Get:5 http://incoming.debian.org unstable Release [145 kB]
-Ign http://mirror.ayous.org unstable/contrib TranslationIndex
-Get:6 http://mirror.ayous.org unstable/main TranslationIndex [2045 B]
-Get:7 http://mirror.ayous.org unstable/main Sources [6812 kB]
-Get:8 http://incoming.debian.org Release [1604 B]
+Get:5 http://incoming.debian.org Release [1604 B]
+Get:6 http://incoming.debian.org unstable/main Sources [5884 kB]
+Get:7 http://ftp.at.debian.org unstable/contrib Sources [56.9 kB]
+Get:8 http://ftp.at.debian.org unstable/non-free Sources [104 kB]
+Get:9 http://ftp.at.debian.org unstable/main mipsel Packages [7609 kB]
+Get:10 http://ftp.at.debian.org unstable/contrib mipsel Packages [56.1 kB]
+Ign http://ftp.at.debian.org unstable/contrib TranslationIndex
+Get:11 http://ftp.at.debian.org unstable/main TranslationIndex [2045 B]
+Ign http://ftp.at.debian.org unstable/contrib Translation-en
+Get:12 http://incoming.debian.org unstable/contrib Sources [56.9 kB]
+Get:13 http://incoming.debian.org unstable/non-free Sources [104 kB]
+Get:14 http://incoming.debian.org unstable/main mipsel Packages [7609 kB]
+Get:15 http://incoming.debian.org unstable/contrib mipsel Packages [56.1 kB]
Ign http://incoming.debian.org unstable/contrib TranslationIndex
-Get:9 http://incoming.debian.org unstable/main TranslationIndex [2045 B]
-Get:10 http://incoming.debian.org unstable/main Sources [6812 kB]
-Get:11 http://mirror.ayous.org unstable/contrib Sources [60.4 kB]
-Get:12 http://mirror.ayous.org unstable/non-free Sources [115 kB]
-Get:13 http://incoming.debian.org unstable/contrib Sources [60.4 kB]
-Get:14 http://incoming.debian.org unstable/non-free Sources [115 kB]
-Get:15 http://mirror.ayous.org unstable/main mipsel Packages [9675 kB]
-Get:16 http://incoming.debian.org unstable/main mipsel Packages [9675 kB]
-Get:17 http://incoming.debian.org unstable/contrib mipsel Packages [65.3 kB]
-Get:18 http://incoming.debian.org Sources [35.4 kB]
-Get:19 http://incoming.debian.org Packages [370 kB]
+Get:16 http://incoming.debian.org unstable/main TranslationIndex [2045 B]
+Get:17 http://incoming.debian.org Sources [51.8 kB]
+Get:18 http://incoming.debian.org Packages [356 kB]
Ign http://incoming.debian.org Translation-en
Ign http://incoming.debian.org unstable/contrib Translation-en
-Get:20 http://mirror.ayous.org unstable/contrib mipsel Packages [65.3 kB]
-Ign http://mirror.ayous.org unstable/contrib Translation-en
-Fetched 34.2 MB in 34s (1004 kB/s)
+Fetched 28.1 MB in 1min 14s (377 kB/s)
Reading package lists...
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -1094,60 +948,106 @@ Building dependency tree...
Reading state information...
NOTICE: 'r-bioc-biobase' packaging is maintained in the 'Git' version control system at:
git://git.debian.org/git/debian-med/r-bioc-biobase.git
-Need to get 2229 kB of source archives.
-Get:1 http://incoming.debian.org/buildd-unstable/ r-bioc-biobase 2.12.2-1 (dsc) [1944 B]
-Get:2 http://incoming.debian.org/buildd-unstable/ r-bioc-biobase 2.12.2-1 (tar) [2222 kB]
-Get:3 http://incoming.debian.org/buildd-unstable/ r-bioc-biobase 2.12.2-1 (diff) [5417 B]
-Fetched 2229 kB in 6s (349 kB/s)
+Need to get 1934 kB of source archives.
+Get:1 http://incoming.debian.org/buildd-unstable/ r-bioc-biobase 2.14.0-1 (dsc) [2004 B]
+Get:2 http://incoming.debian.org/buildd-unstable/ r-bioc-biobase 2.14.0-1 (tar) [1926 kB]
+Get:3 http://incoming.debian.org/buildd-unstable/ r-bioc-biobase 2.14.0-1 (diff) [5645 B]
+Fetched 1934 kB in 1s (1098 kB/s)
Download complete and in download only mode
Check arch
──────────
-** Using build dependencies supplied by package:
-Build-Depends: cdbs, debhelper (>= 8), r-base-dev
┌──────────────────────────────────────────────────────────────────────────────┐
-│ Install build dependencies (internal resolver) │
+│ Install core build dependencies (internal resolver) │
└──────────────────────────────────────────────────────────────────────────────┘
-Checking for already installed source dependencies...
+Build-Depends: build-essential, fakeroot
+Checking for already installed dependencies...
+build-essential: already installed (11.5)
+fakeroot: already installed (1.18.1-1)
+Checking for dependency conflicts...
+Installing positive dependencies:
+Reading package lists...
+Building dependency tree...
+Reading state information...
+0 upgraded, 0 newly installed, 0 to remove and 24 not upgraded.
+Removing negative dependencies:
+Reading package lists...
+Building dependency tree...
+Reading state information...
+0 upgraded, 0 newly installed, 0 to remove and 24 not upgraded.
+Checking correctness of dependencies...
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Install r-bioc-biobase build dependencies (internal resolver) │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+Build-Depends: base-files, base-passwd, bash, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, ncurses-base, ncurses-bin, perl-base, sed, login, sysvinit-utils, sysvinit, tar, bsdutils, mount, util-linux, libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), cdbs, debhelper (>= 8), r-base-dev (>= 2.10)
+Checking for already installed dependencies...
+base-files: already installed (6.5)
+base-passwd: already installed (3.5.23)
+bash: already installed (4.1-3)
+coreutils: already installed (8.13-3)
+dash: already installed (0.5.7-2)
+debianutils: already installed (4.0.4)
+diffutils: already installed (1:3.0-1)
+dpkg: already installed (1.16.1.1)
+e2fsprogs: already installed (1.42~WIP-2011-10-09-1)
+findutils: already installed (4.4.2-1+b1)
+grep: already installed (2.9-2)
+gzip: already installed (1.4-1)
+hostname: already installed (3.06)
+ncurses-base: already installed (5.9-2)
+ncurses-bin: already installed (5.9-2)
+perl-base: already installed (5.12.4-6)
+sed: already installed (4.2.1-9)
+login: already installed (1:4.1.4.2+svn3283-3)
+sysvinit-utils: already installed (2.88dsf-13.12)
+sysvinit: already installed (2.88dsf-13.12)
+tar: already installed (1.26-2)
+bsdutils: already installed (1:2.19.1-5)
+mount: already installed (2.19.1-5)
+util-linux: already installed (2.19.1-5)
+libc6-dev: already installed (2.13-21)
+gcc: already installed (4:4.6.1-3 >= 4:4.4.3 is satisfied)
+g++: already installed (4:4.6.1-3 >= 4:4.4.3 is satisfied)
+make: already installed (3.81-8.1)
+dpkg-dev: already installed (1.16.1.1 >= 1.13.5 is satisfied)
cdbs: missing
debhelper: missing
-Using default version 8.9.3
+Using default version 8.9.8
r-base-dev: missing
-Checking for source dependency conflicts...
+Using default version 2.14.0-1
+Checking for dependency conflicts...
Installing positive dependencies: cdbs debhelper r-base-dev
Reading package lists...
Building dependency tree...
Reading state information...
The following extra packages will be installed:
- bsdmainutils cpp cpp-4.4 cpp-4.6 dpatch file fontconfig fontconfig-config
- g++-4.4 g++-4.6 gcc gcc-4.4 gcc-4.4-base gcc-4.6 gcc-4.6-base gettext
- gettext-base gfortran gfortran-4.6 groff-base html2text intltool-debian
- libblas-dev libblas3gf libbz2-dev libcairo2 libcroco3 libdatrie1 libexpat1
- libfontconfig1 libfreetype6 libgcc1 libgfortran3 libglib2.0-0 libgomp1
- libice6 libjpeg62 libjpeg8 libjpeg8-dev liblapack-dev liblapack3gf libmagic1
- libncurses5-dev libpango1.0-0 libpaper-utils libpaper1 libpcre3 libpcre3-dev
- libpcrecpp0 libpipeline1 libpixman-1-0 libpng12-0 libpng12-dev
- libreadline-dev libreadline6-dev libsm6 libstdc++6 libstdc++6-4.4-dev
- libstdc++6-4.6-dev libthai-data libthai0 libtiff4 libunistring0 libx11-6
- libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6
- libxft2 libxml2 libxrender1 libxss1 libxt6 man-db po-debconf r-base-core
- tcl8.5 tk8.5 ttf-dejavu-core ucf unzip x11-common xdg-utils zip zlib1g-dev
+ bsdmainutils cpp-4.6 dpatch file fontconfig fontconfig-config g++-4.6
+ gcc-4.6 gcc-4.6-base gettext gettext-base gfortran gfortran-4.6 groff-base
+ html2text intltool-debian libblas-dev libblas3gf libbz2-dev libcairo2
+ libcroco3 libdatrie1 libexpat1 libfontconfig1 libfreetype6 libgcc1
+ libgfortran3 libglib2.0-0 libgomp1 libice6 libjpeg8 libjpeg8-dev
+ liblapack-dev liblapack3gf liblzma5 libmagic1 libncurses5-dev libpango1.0-0
+ libpaper-utils libpaper1 libpcre3 libpcre3-dev libpcrecpp0 libpipeline1
+ libpixman-1-0 libpng12-0 libpng12-dev libreadline-dev libreadline6-dev
+ libsm6 libstdc++6 libstdc++6-4.6-dev libthai-data libthai0 libtiff4
+ libtinfo-dev libunistring0 libx11-6 libx11-data libxau6 libxcb-render0
+ libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxrender1 libxss1
+ libxt6 man-db po-debconf r-base-core tcl8.5 tk8.5 ttf-dejavu-core ucf unzip
+ x11-common xdg-utils zip zlib1g-dev
Suggested packages:
- wamerican wordlist whois vacation devscripts cpp-doc gcc-4.4-locales
- gcc-4.6-locales dh-make curl defoma g++-4.4-multilib gcc-4.4-doc
- libstdc++6-4.4-dbg g++-4.6-multilib gcc-4.6-doc libstdc++6-4.6-dbg
- gcc-multilib manpages-dev autoconf automake1.9 libtool flex bison gdb
- gcc-doc gcc-4.4-multilib libmudflap0-4.4-dev libgcc1-dbg libgomp1-dbg
- libmudflap0-dbg libppl-c2 libppl7 gcc-4.6-multilib libmudflap0-4.6-dev
- libquadmath-dbg gettext-doc gfortran-multilib gfortran-doc
- gfortran-4.6-multilib gfortran-4.6-doc libgfortran3-dbg groff ncurses-doc
- ttf-baekmuk ttf-arphic-gbsn00lp ttf-arphic-bsmi00lp ttf-arphic-gkai00mp
- ttf-arphic-bkai00mp libstdc++6-4.4-doc libstdc++6-4.6-doc less www-browser
- libmail-box-perl r-doc-info r-doc-pdf r-mathlib r-base-html tclreadline
- gvfs-bin
+ wamerican wordlist whois vacation devscripts gcc-4.6-locales dh-make curl
+ defoma g++-4.6-multilib gcc-4.6-doc libstdc++6-4.6-dbg gcc-4.6-multilib
+ libmudflap0-4.6-dev libgcc1-dbg libgomp1-dbg libquadmath-dbg libmudflap0-dbg
+ gettext-doc gfortran-multilib gfortran-doc gfortran-4.6-multilib
+ gfortran-4.6-doc libgfortran3-dbg groff ncurses-doc ttf-baekmuk
+ ttf-arphic-gbsn00lp ttf-arphic-bsmi00lp ttf-arphic-gkai00mp
+ ttf-arphic-bkai00mp libstdc++6-4.6-doc less www-browser libmail-box-perl
+ r-doc-info r-doc-pdf r-mathlib r-base-html tclreadline gvfs-bin
Recommended packages:
autotools-dev patchutils autopoint libglib2.0-data shared-mime-info
x-ttcidfont-conf xml-core libmail-sendmail-perl r-recommended r-doc-html
@@ -1156,348 +1056,333 @@ The following NEW packages will be installed:
bsdmainutils cdbs debhelper dpatch file fontconfig fontconfig-config gettext
gettext-base gfortran gfortran-4.6 groff-base html2text intltool-debian
libblas-dev libblas3gf libbz2-dev libcairo2 libcroco3 libdatrie1 libexpat1
- libfontconfig1 libfreetype6 libgfortran3 libglib2.0-0 libice6 libjpeg62
- libjpeg8 libjpeg8-dev liblapack-dev liblapack3gf libmagic1 libncurses5-dev
+ libfontconfig1 libfreetype6 libgfortran3 libglib2.0-0 libice6 libjpeg8
+ libjpeg8-dev liblapack-dev liblapack3gf liblzma5 libmagic1 libncurses5-dev
libpango1.0-0 libpaper-utils libpaper1 libpcre3 libpcre3-dev libpcrecpp0
libpipeline1 libpixman-1-0 libpng12-0 libpng12-dev libreadline-dev
- libreadline6-dev libsm6 libthai-data libthai0 libtiff4 libunistring0
- libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6
- libxext6 libxft2 libxml2 libxrender1 libxss1 libxt6 man-db po-debconf
- r-base-core r-base-dev tcl8.5 tk8.5 ttf-dejavu-core ucf unzip x11-common
- xdg-utils zip zlib1g-dev
+ libreadline6-dev libsm6 libthai-data libthai0 libtiff4 libtinfo-dev
+ libunistring0 libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0
+ libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxrender1 libxss1 libxt6 man-db
+ po-debconf r-base-core r-base-dev tcl8.5 tk8.5 ttf-dejavu-core ucf unzip
+ x11-common xdg-utils zip zlib1g-dev
The following packages will be upgraded:
- cpp cpp-4.4 cpp-4.6 g++-4.4 g++-4.6 gcc gcc-4.4 gcc-4.4-base gcc-4.6
- gcc-4.6-base libgcc1 libgomp1 libstdc++6 libstdc++6-4.4-dev
+ cpp-4.6 g++-4.6 gcc-4.6 gcc-4.6-base libgcc1 libgomp1 libstdc++6
libstdc++6-4.6-dev
-15 upgraded, 76 newly installed, 0 to remove and 46 not upgraded.
-Need to get 78.2 MB of archives.
-After this operation, 129 MB of additional disk space will be used.
-Get:1 http://mirror.ayous.org/debian/ unstable/main libgomp1 mipsel 4.6.1-5 [26.2 kB]
-Get:2 http://mirror.ayous.org/debian/ unstable/main g++-4.4 mipsel 4.4.6-7 [4991 kB]
-Get:3 http://mirror.ayous.org/debian/ unstable/main libstdc++6-4.4-dev mipsel 4.4.6-7 [1559 kB]
-Get:4 http://mirror.ayous.org/debian/ unstable/main cpp-4.4 mipsel 4.4.6-7 [3400 kB]
-Get:5 http://mirror.ayous.org/debian/ unstable/main gcc-4.4-base mipsel 4.4.6-7 [125 kB]
-Get:6 http://mirror.ayous.org/debian/ unstable/main gcc-4.4 mipsel 4.4.6-7 [612 kB]
-Get:7 http://mirror.ayous.org/debian/ unstable/main gcc-4.6-base mipsel 4.6.1-5 [134 kB]
-Get:8 http://mirror.ayous.org/debian/ unstable/main libgcc1 mipsel 1:4.6.1-5 [68.4 kB]
-Get:9 http://mirror.ayous.org/debian/ unstable/main cpp-4.6 mipsel 4.6.1-5 [3752 kB]
-Get:10 http://mirror.ayous.org/debian/ unstable/main libstdc++6-4.6-dev mipsel 4.6.1-5 [1704 kB]
-Get:11 http://mirror.ayous.org/debian/ unstable/main g++-4.6 mipsel 4.6.1-5 [6150 kB]
-Get:12 http://mirror.ayous.org/debian/ unstable/main gcc-4.6 mipsel 4.6.1-5 [4065 kB]
-Get:13 http://mirror.ayous.org/debian/ unstable/main libstdc++6 mipsel 4.6.1-5 [301 kB]
-Get:14 http://mirror.ayous.org/debian/ unstable/main libpipeline1 mipsel 1.2.0-3 [35.7 kB]
-Get:15 http://mirror.ayous.org/debian/ unstable/main libdatrie1 mipsel 0.2.4-3 [27.1 kB]
-Get:16 http://mirror.ayous.org/debian/ unstable/main libexpat1 mipsel 2.0.1-7 [134 kB]
-Get:17 http://mirror.ayous.org/debian/ unstable/main libfreetype6 mipsel 2.4.4-2 [397 kB]
-Get:18 http://mirror.ayous.org/debian/ unstable/main ucf all 3.0025+nmu2 [70.6 kB]
-Get:19 http://mirror.ayous.org/debian/ unstable/main ttf-dejavu-core all 2.33-1 [1550 kB]
-Get:20 http://mirror.ayous.org/debian/ unstable/main fontconfig-config all 2.8.0-3 [221 kB]
-Get:21 http://mirror.ayous.org/debian/ unstable/main libfontconfig1 mipsel 2.8.0-3 [285 kB]
-Get:22 http://mirror.ayous.org/debian/ unstable/main libgfortran3 mipsel 4.6.1-5 [230 kB]
-Get:23 http://mirror.ayous.org/debian/ unstable/main x11-common all 1:7.6+7 [275 kB]
-Get:24 http://mirror.ayous.org/debian/ unstable/main libice6 mipsel 2:1.0.7-2 [49.9 kB]
-Get:25 http://mirror.ayous.org/debian/ unstable/main libpixman-1-0 mipsel 0.22.2-1 [338 kB]
-Get:26 http://mirror.ayous.org/debian/ unstable/main libpng12-0 mipsel 1.2.46-3 [184 kB]
-Get:27 http://mirror.ayous.org/debian/ unstable/main libxau6 mipsel 1:1.0.6-3 [16.6 kB]
-Get:28 http://mirror.ayous.org/debian/ unstable/main libxdmcp6 mipsel 1:1.1.0-3 [22.2 kB]
-Get:29 http://mirror.ayous.org/debian/ unstable/main libxcb1 mipsel 1.7-3 [37.7 kB]
-Get:30 http://mirror.ayous.org/debian/ unstable/main libx11-data all 2:1.4.4-1 [183 kB]
-Get:31 http://mirror.ayous.org/debian/ unstable/main libx11-6 mipsel 2:1.4.4-1 [858 kB]
-Get:32 http://mirror.ayous.org/debian/ unstable/main libxcb-render0 mipsel 1.7-3 [14.5 kB]
-Get:33 http://mirror.ayous.org/debian/ unstable/main libxcb-shm0 mipsel 1.7-3 [9366 B]
-Get:34 http://mirror.ayous.org/debian/ unstable/main libxrender1 mipsel 1:0.9.6-2 [30.2 kB]
-Get:35 http://mirror.ayous.org/debian/ unstable/main libcairo2 mipsel 1.10.2-6.1 [954 kB]
-Get:36 http://mirror.ayous.org/debian/ unstable/main libpcre3 mipsel 8.12-3 [262 kB]
-Get:37 http://mirror.ayous.org/debian/ unstable/main libglib2.0-0 mipsel 2.28.6-1 [1503 kB]
-Get:38 http://mirror.ayous.org/debian/ unstable/main libthai-data all 0.1.15-2 [201 kB]
-Get:39 http://mirror.ayous.org/debian/ unstable/main libthai0 mipsel 0.1.15-2 [41.6 kB]
-Get:40 http://mirror.ayous.org/debian/ unstable/main libxft2 mipsel 2.2.0-3 [56.8 kB]
-Get:41 http://mirror.ayous.org/debian/ unstable/main fontconfig mipsel 2.8.0-3 [334 kB]
-Get:42 http://mirror.ayous.org/debian/ unstable/main libpango1.0-0 mipsel 1.28.4-2 [418 kB]
-Get:43 http://mirror.ayous.org/debian/ unstable/main libsm6 mipsel 2:1.2.0-2 [28.1 kB]
-Get:44 http://mirror.ayous.org/debian/ unstable/main libxext6 mipsel 2:1.3.0-3 [48.8 kB]
-Get:45 http://mirror.ayous.org/debian/ unstable/main libxt6 mipsel 1:1.1.1-2 [189 kB]
-Get:46 http://mirror.ayous.org/debian/ unstable/main bsdmainutils mipsel 8.2.3 [208 kB]
-Get:47 http://mirror.ayous.org/debian/ unstable/main groff-base mipsel 1.21-6 [1142 kB]
-Get:48 http://mirror.ayous.org/debian/ unstable/main man-db mipsel 2.6.0.2-2 [986 kB]
-Get:49 http://mirror.ayous.org/debian/ unstable/main libmagic1 mipsel 5.04-5+b1 [238 kB]
-Get:50 http://mirror.ayous.org/debian/ unstable/main file mipsel 5.04-5+b1 [49.9 kB]
-Get:51 http://mirror.ayous.org/debian/ unstable/main gettext-base mipsel 0.18.1.1-3 [152 kB]
-Get:52 http://mirror.ayous.org/debian/ unstable/main libxml2 mipsel 2.7.8.dfsg-4 [858 kB]
-Get:53 http://mirror.ayous.org/debian/ unstable/main html2text mipsel 1.3.2a-15 [103 kB]
-Get:54 http://mirror.ayous.org/debian/ unstable/main libcroco3 mipsel 0.6.2-1 [110 kB]
-Get:55 http://mirror.ayous.org/debian/ unstable/main libunistring0 mipsel 0.9.3-4 [411 kB]
-Get:56 http://mirror.ayous.org/debian/ unstable/main gettext mipsel 0.18.1.1-3 [2023 kB]
-Get:57 http://mirror.ayous.org/debian/ unstable/main intltool-debian all 0.35.0+20060710.1 [30.8 kB]
-Get:58 http://mirror.ayous.org/debian/ unstable/main po-debconf all 1.0.16+nmu1 [223 kB]
-Get:59 http://mirror.ayous.org/debian/ unstable/main debhelper all 8.9.3 [561 kB]
-Get:60 http://mirror.ayous.org/debian/ unstable/main cdbs all 0.4.96 [75.8 kB]
-Get:61 http://mirror.ayous.org/debian/ unstable/main cpp mipsel 4:4.6.1-2 [15.9 kB]
-Get:62 http://mirror.ayous.org/debian/ unstable/main dpatch all 2.0.31 [92.3 kB]
-Get:63 http://mirror.ayous.org/debian/ unstable/main gcc mipsel 4:4.6.1-2 [5026 B]
-Get:64 http://mirror.ayous.org/debian/ unstable/main gfortran-4.6 mipsel 4.6.1-5 [4381 kB]
-Get:65 http://mirror.ayous.org/debian/ unstable/main gfortran mipsel 4:4.6.1-2 [1130 B]
-Get:66 http://mirror.ayous.org/debian/ unstable/main libblas3gf mipsel 1.2-8 [210 kB]
-Get:67 http://mirror.ayous.org/debian/ unstable/main libblas-dev mipsel 1.2-8 [256 kB]
-Get:68 http://mirror.ayous.org/debian/ unstable/main libbz2-dev mipsel 1.0.5-6 [38.1 kB]
-Get:69 http://mirror.ayous.org/debian/ unstable/main libjpeg62 mipsel 6b1-2 [93.7 kB]
-Get:70 http://mirror.ayous.org/debian/ unstable/main libjpeg8 mipsel 8c-2 [145 kB]
-Get:71 http://mirror.ayous.org/debian/ unstable/main libjpeg8-dev mipsel 8c-2 [256 kB]
-Get:72 http://mirror.ayous.org/debian/ unstable/main liblapack3gf mipsel 3.3.0-4 [4572 kB]
-Get:73 http://mirror.ayous.org/debian/ unstable/main liblapack-dev mipsel 3.3.0-4 [5190 kB]
-Get:74 http://mirror.ayous.org/debian/ unstable/main libncurses5-dev mipsel 5.9-1 [506 kB]
-Get:75 http://mirror.ayous.org/debian/ unstable/main libpaper1 mipsel 1.1.24+nmu1 [21.2 kB]
-Get:76 http://mirror.ayous.org/debian/ unstable/main libpaper-utils mipsel 1.1.24+nmu1 [18.2 kB]
-Get:77 http://mirror.ayous.org/debian/ unstable/main libpcrecpp0 mipsel 8.12-3 [113 kB]
-Get:78 http://mirror.ayous.org/debian/ unstable/main libpcre3-dev mipsel 8.12-3 [315 kB]
-Get:79 http://mirror.ayous.org/debian/ unstable/main zlib1g-dev mipsel 1:1.2.3.4.dfsg-3 [192 kB]
-Get:80 http://mirror.ayous.org/debian/ unstable/main libpng12-dev mipsel 1.2.46-3 [275 kB]
-Get:81 http://mirror.ayous.org/debian/ unstable/main libreadline6-dev mipsel 6.2-2 [270 kB]
-Get:82 http://mirror.ayous.org/debian/ unstable/main libreadline-dev mipsel 6.2-2 [882 B]
-Get:83 http://mirror.ayous.org/debian/ unstable/main libtiff4 mipsel 3.9.5-1 [191 kB]
-Get:84 http://mirror.ayous.org/debian/ unstable/main libxss1 mipsel 1:1.2.1-1 [16.4 kB]
-Get:85 http://mirror.ayous.org/debian/ unstable/main zip mipsel 3.0-4 [334 kB]
-Get:86 http://mirror.ayous.org/debian/ unstable/main unzip mipsel 6.0-5 [189 kB]
-Get:87 http://mirror.ayous.org/debian/ unstable/main xdg-utils all 1.1.0~rc1-2 [70.2 kB]
-Get:88 http://mirror.ayous.org/debian/ unstable/main tcl8.5 mipsel 8.5.10-1 [1604 kB]
-Get:89 http://mirror.ayous.org/debian/ unstable/main tk8.5 mipsel 8.5.10-1 [1162 kB]
-Get:90 http://mirror.ayous.org/debian/ unstable/main r-base-core mipsel 2.13.1-1 [14.6 MB]
-Get:91 http://mirror.ayous.org/debian/ unstable/main r-base-dev all 2.13.1-1 [3490 B]
+8 upgraded, 77 newly installed, 0 to remove and 16 not upgraded.
+Need to get 71.0 MB of archives.
+After this operation, 123 MB of additional disk space will be used.
+Get:1 http://ftp.at.debian.org/debian/ unstable/main libgomp1 mipsel 4.6.2-2 [26.2 kB]
+Get:2 http://ftp.at.debian.org/debian/ unstable/main gcc-4.6-base mipsel 4.6.2-2 [136 kB]
+Get:3 http://ftp.at.debian.org/debian/ unstable/main libgcc1 mipsel 1:4.6.2-2 [68.3 kB]
+Get:4 http://ftp.at.debian.org/debian/ unstable/main cpp-4.6 mipsel 4.6.2-2 [3779 kB]
+Get:5 http://ftp.at.debian.org/debian/ unstable/main libstdc++6-4.6-dev mipsel 4.6.2-2 [1669 kB]
+Get:6 http://ftp.at.debian.org/debian/ unstable/main g++-4.6 mipsel 4.6.2-2 [6159 kB]
+Get:7 http://ftp.at.debian.org/debian/ unstable/main gcc-4.6 mipsel 4.6.2-2 [4038 kB]
+Get:8 http://ftp.at.debian.org/debian/ unstable/main libstdc++6 mipsel 4.6.2-2 [295 kB]
+Get:9 http://ftp.at.debian.org/debian/ unstable/main libpipeline1 mipsel 1.2.0-4 [35.2 kB]
+Get:10 http://ftp.at.debian.org/debian/ unstable/main liblzma5 mipsel 5.1.1alpha+20110809-3 [204 kB]
+Get:11 http://ftp.at.debian.org/debian/ unstable/main libpcre3 mipsel 8.12-4 [227 kB]
+Get:12 http://ftp.at.debian.org/debian/ unstable/main libglib2.0-0 mipsel 2.28.8-1 [1561 kB]
+Get:13 http://ftp.at.debian.org/debian/ unstable/main libxml2 mipsel 2.7.8.dfsg-5 [858 kB]
+Get:14 http://ftp.at.debian.org/debian/ unstable/main libcroco3 mipsel 0.6.2-2 [103 kB]
+Get:15 http://ftp.at.debian.org/debian/ unstable/main libdatrie1 mipsel 0.2.4-3 [27.1 kB]
+Get:16 http://ftp.at.debian.org/debian/ unstable/main libexpat1 mipsel 2.0.1-7.1 [141 kB]
+Get:17 http://ftp.at.debian.org/debian/ unstable/main libfreetype6 mipsel 2.4.7-2 [422 kB]
+Get:18 http://ftp.at.debian.org/debian/ unstable/main ucf all 3.0025+nmu2 [70.6 kB]
+Get:19 http://ftp.at.debian.org/debian/ unstable/main ttf-dejavu-core all 2.33-2 [1552 kB]
+Get:20 http://ftp.at.debian.org/debian/ unstable/main fontconfig-config all 2.8.0-3 [221 kB]
+Get:21 http://ftp.at.debian.org/debian/ unstable/main libfontconfig1 mipsel 2.8.0-3 [285 kB]
+Get:22 http://ftp.at.debian.org/debian/ unstable/main libgfortran3 mipsel 4.6.2-2 [230 kB]
+Get:23 http://ftp.at.debian.org/debian/ unstable/main x11-common all 1:7.6+9 [276 kB]
+Get:24 http://ftp.at.debian.org/debian/ unstable/main libice6 mipsel 2:1.0.7-2 [49.9 kB]
+Get:25 http://ftp.at.debian.org/debian/ unstable/main libpixman-1-0 mipsel 0.23.8-1 [363 kB]
+Get:26 http://ftp.at.debian.org/debian/ unstable/main libpng12-0 mipsel 1.2.46-3 [184 kB]
+Get:27 http://ftp.at.debian.org/debian/ unstable/main libxau6 mipsel 1:1.0.6-3 [16.6 kB]
+Get:28 http://ftp.at.debian.org/debian/ unstable/main libxdmcp6 mipsel 1:1.1.0-3 [22.2 kB]
+Get:29 http://ftp.at.debian.org/debian/ unstable/main libxcb1 mipsel 1.7-3 [37.7 kB]
+Get:30 http://ftp.at.debian.org/debian/ unstable/main libx11-data all 2:1.4.4-2 [183 kB]
+Get:31 http://ftp.at.debian.org/debian/ unstable/main libx11-6 mipsel 2:1.4.4-2 [858 kB]
+Get:32 http://ftp.at.debian.org/debian/ unstable/main libxcb-render0 mipsel 1.7-3 [14.5 kB]
+Get:33 http://ftp.at.debian.org/debian/ unstable/main libxcb-shm0 mipsel 1.7-3 [9366 B]
+Get:34 http://ftp.at.debian.org/debian/ unstable/main libxrender1 mipsel 1:0.9.6-2 [30.2 kB]
+Get:35 http://ftp.at.debian.org/debian/ unstable/main libcairo2 mipsel 1.10.2-6.1 [954 kB]
+Get:36 http://ftp.at.debian.org/debian/ unstable/main libthai-data all 0.1.15-2 [201 kB]
+Get:37 http://ftp.at.debian.org/debian/ unstable/main libthai0 mipsel 0.1.15-2 [41.6 kB]
+Get:38 http://ftp.at.debian.org/debian/ unstable/main libxft2 mipsel 2.2.0-3 [56.8 kB]
+Get:39 http://ftp.at.debian.org/debian/ unstable/main fontconfig mipsel 2.8.0-3 [334 kB]
+Get:40 http://ftp.at.debian.org/debian/ unstable/main libpango1.0-0 mipsel 1.29.4-2 [434 kB]
+Get:41 http://ftp.at.debian.org/debian/ unstable/main libpcrecpp0 mipsel 8.12-4 [112 kB]
+Get:42 http://ftp.at.debian.org/debian/ unstable/main libsm6 mipsel 2:1.2.0-2 [28.1 kB]
+Get:43 http://ftp.at.debian.org/debian/ unstable/main libjpeg8 mipsel 8c-2 [145 kB]
+Get:44 http://ftp.at.debian.org/debian/ unstable/main libtiff4 mipsel 3.9.5-2 [191 kB]
+Get:45 http://ftp.at.debian.org/debian/ unstable/main libunistring0 mipsel 0.9.3-5 [407 kB]
+Get:46 http://ftp.at.debian.org/debian/ unstable/main libxext6 mipsel 2:1.3.0-3 [48.8 kB]
+Get:47 http://ftp.at.debian.org/debian/ unstable/main libxss1 mipsel 1:1.2.1-2 [16.5 kB]
+Get:48 http://ftp.at.debian.org/debian/ unstable/main libxt6 mipsel 1:1.1.1-2 [189 kB]
+Get:49 http://ftp.at.debian.org/debian/ unstable/main bsdmainutils mipsel 8.2.3 [208 kB]
+Get:50 http://ftp.at.debian.org/debian/ unstable/main groff-base mipsel 1.21-6 [1142 kB]
+Get:51 http://ftp.at.debian.org/debian/ unstable/main man-db mipsel 2.6.0.2-2 [986 kB]
+Get:52 http://ftp.at.debian.org/debian/ unstable/main libmagic1 mipsel 5.09-2 [247 kB]
+Get:53 http://ftp.at.debian.org/debian/ unstable/main file mipsel 5.09-2 [52.0 kB]
+Get:54 http://ftp.at.debian.org/debian/ unstable/main gettext-base mipsel 0.18.1.1-5 [133 kB]
+Get:55 http://ftp.at.debian.org/debian/ unstable/main cdbs all 0.4.99 [77.1 kB]
+Get:56 http://ftp.at.debian.org/debian/ unstable/main html2text mipsel 1.3.2a-15 [103 kB]
+Get:57 http://ftp.at.debian.org/debian/ unstable/main gettext mipsel 0.18.1.1-5 [2008 kB]
+Get:58 http://ftp.at.debian.org/debian/ unstable/main intltool-debian all 0.35.0+20060710.1 [30.8 kB]
+Get:59 http://ftp.at.debian.org/debian/ unstable/main po-debconf all 1.0.16+nmu1 [223 kB]
+Get:60 http://ftp.at.debian.org/debian/ unstable/main debhelper all 8.9.8 [552 kB]
+Get:61 http://ftp.at.debian.org/debian/ unstable/main dpatch all 2.0.33 [95.9 kB]
+Get:62 http://ftp.at.debian.org/debian/ unstable/main gfortran-4.6 mipsel 4.6.2-2 [4379 kB]
+Get:63 http://ftp.at.debian.org/debian/ unstable/main gfortran mipsel 4:4.6.1-3 [1134 B]
+Get:64 http://ftp.at.debian.org/debian/ unstable/main libblas3gf mipsel 1.2.20110419-2 [203 kB]
+Get:65 http://ftp.at.debian.org/debian/ unstable/main libblas-dev mipsel 1.2.20110419-2 [244 kB]
+Get:66 http://ftp.at.debian.org/debian/ unstable/main libbz2-dev mipsel 1.0.5-7 [37.9 kB]
+Get:67 http://ftp.at.debian.org/debian/ unstable/main libjpeg8-dev mipsel 8c-2 [256 kB]
+Get:68 http://ftp.at.debian.org/debian/ unstable/main liblapack3gf mipsel 3.3.1-1 [4277 kB]
+Get:69 http://ftp.at.debian.org/debian/ unstable/main liblapack-dev mipsel 3.3.1-1 [4906 kB]
+Get:70 http://ftp.at.debian.org/debian/ unstable/main libtinfo-dev mipsel 5.9-2 [70.2 kB]
+Get:71 http://ftp.at.debian.org/debian/ unstable/main libncurses5-dev mipsel 5.9-2 [435 kB]
+Get:72 http://ftp.at.debian.org/debian/ unstable/main libpaper1 mipsel 1.1.24+nmu1 [21.2 kB]
+Get:73 http://ftp.at.debian.org/debian/ unstable/main libpaper-utils mipsel 1.1.24+nmu1 [18.2 kB]
+Get:74 http://ftp.at.debian.org/debian/ unstable/main libpcre3-dev mipsel 8.12-4 [316 kB]
+Get:75 http://ftp.at.debian.org/debian/ unstable/main zlib1g-dev mipsel 1:1.2.3.4.dfsg-3 [192 kB]
+Get:76 http://ftp.at.debian.org/debian/ unstable/main libpng12-dev mipsel 1.2.46-3 [275 kB]
+Get:77 http://ftp.at.debian.org/debian/ unstable/main libreadline6-dev mipsel 6.2-7 [270 kB]
+Get:78 http://ftp.at.debian.org/debian/ unstable/main libreadline-dev mipsel 6.2-7 [888 B]
+Get:79 http://ftp.at.debian.org/debian/ unstable/main zip mipsel 3.0-4 [334 kB]
+Get:80 http://ftp.at.debian.org/debian/ unstable/main unzip mipsel 6.0-5 [189 kB]
+Get:81 http://ftp.at.debian.org/debian/ unstable/main xdg-utils all 1.1.0~rc1-2 [70.2 kB]
+Get:82 http://ftp.at.debian.org/debian/ unstable/main tcl8.5 mipsel 8.5.10-1 [1604 kB]
+Get:83 http://ftp.at.debian.org/debian/ unstable/main tk8.5 mipsel 8.5.10-1 [1162 kB]
+Get:84 http://ftp.at.debian.org/debian/ unstable/main r-base-core mipsel 2.14.0-1 [18.6 MB]
+Get:85 http://ftp.at.debian.org/debian/ unstable/main r-base-dev all 2.14.0-1 [3488 B]
debconf: delaying package configuration, since apt-utils is not installed
-Fetched 78.2 MB in 14s (5520 kB/s)
-(Reading database ... 11454 files and directories currently installed.)
-Preparing to replace libgomp1 4.6.0-13 (using .../libgomp1_4.6.1-5_mipsel.deb) ...
+Fetched 71.0 MB in 15s (4486 kB/s)
+(Reading database ... 10699 files and directories currently installed.)
+Preparing to replace libgomp1 4.6.1-15 (using .../libgomp1_4.6.2-2_mipsel.deb) ...
Unpacking replacement libgomp1 ...
-Preparing to replace g++-4.4 4.4.6-3 (using .../g++-4.4_4.4.6-7_mipsel.deb) ...
-Unpacking replacement g++-4.4 ...
-Preparing to replace libstdc++6-4.4-dev 4.4.6-3 (using .../libstdc++6-4.4-dev_4.4.6-7_mipsel.deb) ...
-Unpacking replacement libstdc++6-4.4-dev ...
-Preparing to replace cpp-4.4 4.4.6-3 (using .../cpp-4.4_4.4.6-7_mipsel.deb) ...
-Unpacking replacement cpp-4.4 ...
-Preparing to replace gcc-4.4-base 4.4.6-3 (using .../gcc-4.4-base_4.4.6-7_mipsel.deb) ...
-Unpacking replacement gcc-4.4-base ...
-Preparing to replace gcc-4.4 4.4.6-3 (using .../gcc-4.4_4.4.6-7_mipsel.deb) ...
-Unpacking replacement gcc-4.4 ...
-Preparing to replace gcc-4.6-base 4.6.0-13 (using .../gcc-4.6-base_4.6.1-5_mipsel.deb) ...
+Preparing to replace gcc-4.6-base 4.6.1-15 (using .../gcc-4.6-base_4.6.2-2_mipsel.deb) ...
Unpacking replacement gcc-4.6-base ...
-Setting up gcc-4.6-base (4.6.1-5) ...
-(Reading database ... 11458 files and directories currently installed.)
-Preparing to replace libgcc1 1:4.6.0-13 (using .../libgcc1_1%3a4.6.1-5_mipsel.deb) ...
+Setting up gcc-4.6-base (4.6.2-2) ...
+(Reading database ... 10700 files and directories currently installed.)
+Preparing to replace libgcc1 1:4.6.1-15 (using .../libgcc1_1%3a4.6.2-2_mipsel.deb) ...
Unpacking replacement libgcc1 ...
-Setting up libgcc1 (1:4.6.1-5) ...
-(Reading database ... 11458 files and directories currently installed.)
-Preparing to replace cpp-4.6 4.6.0-13 (using .../cpp-4.6_4.6.1-5_mipsel.deb) ...
+Setting up libgcc1 (1:4.6.2-2) ...
+(Reading database ... 10700 files and directories currently installed.)
+Preparing to replace cpp-4.6 4.6.1-15 (using .../cpp-4.6_4.6.2-2_mipsel.deb) ...
Unpacking replacement cpp-4.6 ...
-Preparing to replace libstdc++6-4.6-dev 4.6.0-13 (using .../libstdc++6-4.6-dev_4.6.1-5_mipsel.deb) ...
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Unpacking replacement libstdc++6-4.6-dev ...
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Unpacking replacement g++-4.6 ...
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Unpacking replacement gcc-4.6 ...
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+Setting up libstdc++6 (4.6.2-2) ...
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+Unpacking libfreetype6 (from .../libfreetype6_2.4.7-2_mipsel.deb) ...
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Moving old data out of the way
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Unpacking libxcb-shm0 (from .../libxcb-shm0_1.7-3_mipsel.deb) ...
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Unpacking intltool-debian (from .../intltool-debian_0.35.0+20060710.1_all.deb) ...
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Unpacking po-debconf (from .../po-debconf_1.0.16+nmu1_all.deb) ...
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+Unpacking gfortran-4.6 (from .../gfortran-4.6_4.6.2-2_mipsel.deb) ...
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-Setting up libgomp1 (4.6.1-5) ...
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-Setting up gcc-4.6 (4.6.1-5) ...
-Setting up libpipeline1 (1.2.0-3) ...
+Selecting previously unselected package r-base-core.
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+Setting up libgomp1 (4.6.2-2) ...
+Setting up cpp-4.6 (4.6.2-2) ...
+Setting up gcc-4.6 (4.6.2-2) ...
+Setting up libpipeline1 (1.2.0-4) ...
+Setting up liblzma5 (5.1.1alpha+20110809-3) ...
+Setting up libpcre3 (8.12-4) ...
+Setting up libglib2.0-0 (2.28.8-1) ...
+No schema files found: doing nothing.
+Setting up libxml2 (2.7.8.dfsg-5) ...
+Setting up libcroco3 (0.6.2-2) ...
Setting up libdatrie1 (0.2.4-3) ...
-Setting up libexpat1 (2.0.1-7) ...
-Setting up libfreetype6 (2.4.4-2) ...
+Setting up libexpat1 (2.0.1-7.1) ...
+Setting up libfreetype6 (2.4.7-2) ...
Setting up ucf (3.0025+nmu2) ...
-Setting up ttf-dejavu-core (2.33-1) ...
+Setting up ttf-dejavu-core (2.33-2) ...
Setting up fontconfig-config (2.8.0-3) ...
Setting up libfontconfig1 (2.8.0-3) ...
-Setting up libgfortran3 (4.6.1-5) ...
-Setting up x11-common (1:7.6+7) ...
+Setting up libgfortran3 (4.6.2-2) ...
+Setting up x11-common (1:7.6+9) ...
All runlevel operations denied by policy
invoke-rc.d: policy-rc.d denied execution of start.
Setting up libice6 (2:1.0.7-2) ...
-Setting up libpixman-1-0 (0.22.2-1) ...
+Setting up libpixman-1-0 (0.23.8-1) ...
Setting up libpng12-0 (1.2.46-3) ...
Setting up libxau6 (1:1.0.6-3) ...
Setting up libxdmcp6 (1:1.1.0-3) ...
Setting up libxcb1 (1.7-3) ...
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-Setting up libx11-6 (2:1.4.4-1) ...
+Setting up libx11-data (2:1.4.4-2) ...
+Setting up libx11-6 (2:1.4.4-2) ...
Setting up libxcb-render0 (1.7-3) ...
Setting up libxcb-shm0 (1.7-3) ...
Setting up libxrender1 (1:0.9.6-2) ...
Setting up libcairo2 (1.10.2-6.1) ...
-Setting up libpcre3 (8.12-3) ...
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-No schema files found: doing nothing.
Setting up libthai-data (0.1.15-2) ...
Setting up libthai0 (0.1.15-2) ...
Setting up libxft2 (2.2.0-3) ...
Setting up fontconfig (2.8.0-3) ...
Cleaning up old fontconfig caches... done.
Regenerating fonts cache... done.
-Setting up libpango1.0-0 (1.28.4-2) ...
+Setting up libpango1.0-0 (1.29.4-2) ...
+Setting up libpcrecpp0 (8.12-4) ...
Setting up libsm6 (2:1.2.0-2) ...
+Setting up libjpeg8 (8c-2) ...
+Setting up libtiff4 (3.9.5-2) ...
+Setting up libunistring0 (0.9.3-5) ...
Setting up libxext6 (2:1.3.0-3) ...
+Setting up libxss1 (1:1.2.1-2) ...
Setting up libxt6 (1:1.1.1-2) ...
Setting up bsdmainutils (8.2.3) ...
update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode.
@@ -1505,49 +1390,40 @@ update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in
Setting up groff-base (1.21-6) ...
Setting up man-db (2.6.0.2-2) ...
Building database of manual pages ...
-Setting up libmagic1 (5.04-5+b1) ...
-Setting up file (5.04-5+b1) ...
-Setting up gettext-base (0.18.1.1-3) ...
-Setting up libxml2 (2.7.8.dfsg-4) ...
+Setting up libmagic1 (5.09-2) ...
+Setting up file (5.09-2) ...
+Setting up gettext-base (0.18.1.1-5) ...
+Setting up cdbs (0.4.99) ...
Setting up html2text (1.3.2a-15) ...
-Setting up libcroco3 (0.6.2-1) ...
-Setting up libunistring0 (0.9.3-4) ...
-Setting up gettext (0.18.1.1-3) ...
+Setting up gettext (0.18.1.1-5) ...
Setting up intltool-debian (0.35.0+20060710.1) ...
Setting up po-debconf (1.0.16+nmu1) ...
-Setting up debhelper (8.9.3) ...
-Setting up cdbs (0.4.96) ...
-Setting up cpp (4:4.6.1-2) ...
-Setting up dpatch (2.0.31) ...
-Setting up gcc (4:4.6.1-2) ...
-Setting up gfortran-4.6 (4.6.1-5) ...
-Setting up gfortran (4:4.6.1-2) ...
+Setting up debhelper (8.9.8) ...
+Setting up dpatch (2.0.33) ...
+Setting up gfortran-4.6 (4.6.2-2) ...
+Setting up gfortran (4:4.6.1-3) ...
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode.
-Setting up libblas3gf (1.2-8) ...
+Setting up libblas3gf (1.2.20110419-2) ...
update-alternatives: using /usr/lib/libblas/libblas.so.3gf to provide /usr/lib/libblas.so.3gf (libblas.so.3gf) in auto mode.
-Setting up libblas-dev (1.2-8) ...
+Setting up libblas-dev (1.2.20110419-2) ...
update-alternatives: using /usr/lib/libblas/libblas.so to provide /usr/lib/libblas.so (libblas.so) in auto mode.
-Setting up libbz2-dev (1.0.5-6) ...
-Setting up libjpeg62 (6b1-2) ...
-Setting up libjpeg8 (8c-2) ...
+Setting up libbz2-dev (1.0.5-7) ...
Setting up libjpeg8-dev (8c-2) ...
-Setting up liblapack3gf (3.3.0-4) ...
+Setting up liblapack3gf (3.3.1-1) ...
update-alternatives: using /usr/lib/lapack/liblapack.so.3gf to provide /usr/lib/liblapack.so.3gf (liblapack.so.3gf) in auto mode.
-Setting up liblapack-dev (3.3.0-4) ...
+Setting up liblapack-dev (3.3.1-1) ...
update-alternatives: using /usr/lib/lapack/liblapack.so to provide /usr/lib/liblapack.so (liblapack.so) in auto mode.
-Setting up libncurses5-dev (5.9-1) ...
+Setting up libtinfo-dev (5.9-2) ...
+Setting up libncurses5-dev (5.9-2) ...
Setting up libpaper1 (1.1.24+nmu1) ...
Creating config file /etc/papersize with new version
Setting up libpaper-utils (1.1.24+nmu1) ...
-Setting up libpcrecpp0 (8.12-3) ...
-Setting up libpcre3-dev (8.12-3) ...
+Setting up libpcre3-dev (8.12-4) ...
Setting up zlib1g-dev (1:1.2.3.4.dfsg-3) ...
Setting up libpng12-dev (1.2.46-3) ...
-Setting up libreadline6-dev (6.2-2) ...
-Setting up libreadline-dev (6.2-2) ...
-Setting up libtiff4 (3.9.5-1) ...
-Setting up libxss1 (1:1.2.1-1) ...
+Setting up libreadline6-dev (6.2-7) ...
+Setting up libreadline-dev (6.2-7) ...
Setting up zip (3.0-4) ...
Setting up unzip (6.0-5) ...
Setting up xdg-utils (1.1.0~rc1-2) ...
@@ -1555,20 +1431,22 @@ Setting up tcl8.5 (8.5.10-1) ...
update-alternatives: using /usr/bin/tclsh8.5 to provide /usr/bin/tclsh (tclsh) in auto mode.
Setting up tk8.5 (8.5.10-1) ...
update-alternatives: using /usr/bin/wish8.5 to provide /usr/bin/wish (wish) in auto mode.
-Setting up r-base-core (2.13.1-1) ...
+Setting up r-base-core (2.14.0-1) ...
Setting R_PAPERSIZE_USER default to 'a4'
Creating config file /etc/R/Renviron with new version
-Setting up r-base-dev (2.13.1-1) ...
-Setting up g++-4.4 (4.4.6-7) ...
-Setting up libstdc++6-4.6-dev (4.6.1-5) ...
-Setting up libstdc++6-4.4-dev (4.4.6-7) ...
-Setting up g++-4.6 (4.6.1-5) ...
+Setting up r-base-dev (2.14.0-1) ...
+Setting up libstdc++6-4.6-dev (4.6.2-2) ...
+Setting up g++-4.6 (4.6.2-2) ...
Removing negative dependencies:
-Checking correctness of source dependencies...
-Kernel: Linux 2.6.36-rc6-loongson-2f mipsel (mips64)
-Toolchain package versions: libc6-dev_2.13-7 dpkg-dev_1.16.0.3 linux-libc-dev_2.6.39-2 gcc-4.6_4.6.1-5 g++-4.6_4.6.1-5 binutils_2.21.52.20110606-2 libstdc++6-4.6-dev_4.6.1-5 libstdc++6_4.6.1-5
-Package versions: apt_0.8.14.1 base-files_6.4 base-passwd_3.5.22 bash_4.1-3 binutils_2.21.52.20110606-2 bsdmainutils_8.2.3 bsdutils_1:2.17.2-9.1 build-essential_11.5 bzip2_1.0.5-6 cdbs_0.4.96 coreutils_8.5-1 cpp_4:4.6.1-2 cpp-4.4_4.4.6-7 cpp-4.6_4.6.1-5 dash_0.5.5.1-7.4 debconf_1.5.39 debconf-english_1.5.38 debfoster_2.7-1.1 debhelper_8.9.3 debian-archive-keyring_2010.08.28 debianutils_4.0.2 diffutils_1:3.0-1 dpatch_2.0.31 dpkg_1.16.0.3 dpkg-dev_1.16.0.3 e2fslibs_1.41.12-4 e2fsprogs_1.41.12-4 fakeroot_1.16-1 file_5.04-5+b1 findutils_4.4.2-1+b1 fontconfig_2.8.0-3 fontconfig-config_2.8.0-3 g++_4:4.6.0-5 g++-4.4_4.4.6-7 g++-4.6_4.6.1-5 gcc_4:4.6.1-2 gcc-4.4_4.4.6-7 gcc-4.4-base_4.4.6-7 gcc-4.5-base_4.5.3-1 gcc-4.6_4.6.1-5 gcc-4.6-base_4.6.1-5 gettext_0.18.1.1-3 gettext-base_0.18.1.1-3 gfortran_4:4.6.1-2 gfortran-4.6_4.6.1-5 gnupg_1.4.11-3 gpgv_1.4.11-3 grep_2.8-2 groff-base_1.21-6 gzip_1.3.12-9 hostname_3.06 html2text_1.3.2a-15 initscripts_2.88dsf-13.10 insserv_1.14.0-2.1 intltool-debian_0.35.0+20060710.1 libacl1_2.2.49-5 libattr1_1:2.4.44-3 libblas-dev_1.2-8 libblas3gf_1.2-8 libblkid1_2.17.2-9.1 libbz2-1.0_1.0.5-6 libbz2-dev_1.0.5-6 libc-bin_2.13-7 libc-dev-bin_2.13-7 libc6_2.13-7 libc6-dev_2.13-7 libcairo2_1.10.2-6.1 libcloog-ppl0_0.15.9-3 libcomerr2_1.41.12-4 libcroco3_0.6.2-1 libdatrie1_0.2.4-3 libdb4.7_4.7.25-20 libdb4.8_4.8.30-8 libdb5.1_5.1.25-10 libdpkg-perl_1.16.0.3 libexpat1_2.0.1-7 libfontconfig1_2.8.0-3 libfreetype6_2.4.4-2 libgc1c2_1:7.1-8 libgcc1_1:4.6.1-5 libgdbm3_1.8.3-9 libgfortran3_4.6.1-5 libglib2.0-0_2.28.6-1 libgmp10_2:5.0.1+dfsg-7 libgmp3c2_2:4.3.2+dfsg-2 libgmpxx4ldbl_2:5.0.1+dfsg-7 libgomp1_4.6.1-5 libice6_2:1.0.7-2 libjpeg62_6b1-2 libjpeg8_8c-2 libjpeg8-dev_8c-2 liblapack-dev_3.3.0-4 liblapack3gf_3.3.0-4 liblzma2_5.0.0-2 libmagic1_5.04-5+b1 libmpc2_0.9-3 libmpfr1ldbl_2.4.2-3 libmpfr4_3.0.1-3 libncurses5_5.9-1 libncurses5-dev_5.9-1 libpam-modules_1.1.3-1 libpam-runtime_1.1.3-1 libpam0g_1.1.3-1 libpango1.0-0_1.28.4-2 libpaper-utils_1.1.24+nmu1 libpaper1_1.1.24+nmu1 libpcre3_8.12-3 libpcre3-dev_8.12-3 libpcrecpp0_8.12-3 libpipeline1_1.2.0-3 libpixman-1-0_0.22.2-1 libpng12-0_1.2.46-3 libpng12-dev_1.2.46-3 libppl-c4_0.11.2-3 libppl9_0.11.2-3 libpwl5_0.11.2-3 libreadline-dev_6.2-2 libreadline6_6.2-2 libreadline6-dev_6.2-2 libselinux1_2.0.98-1+b1 libsepol1_2.0.42-1 libslang2_2.2.4-2 libsm6_2:1.2.0-2 libss2_1.41.12-4 libstdc++6_4.6.1-5 libstdc++6-4.4-dev_4.4.6-7 libstdc++6-4.6-dev_4.6.1-5 libthai-data_0.1.15-2 libthai0_0.1.15-2 libtiff4_3.9.5-1 libtimedate-perl_1.2000-1 libunistring0_0.9.3-4 libusb-0.1-4_2:0.1.12-17 libuuid1_2.17.2-9.1 libx11-6_2:1.4.4-1 libx11-data_2:1.4.4-1 libxau6_1:1.0.6-3 libxcb-render0_1.7-3 libxcb-shm0_1.7-3 libxcb1_1.7-3 libxdmcp6_1:1.1.0-3 libxext6_2:1.3.0-3 libxft2_2.2.0-3 libxml2_2.7.8.dfsg-4 libxrender1_1:0.9.6-2 libxss1_1:1.2.1-1 libxt6_1:1.1.1-2 linux-libc-dev_2.6.39-2 login_1:4.1.4.2+svn3283-3 lsb-base_3.2-27 lzma_4.43-14 make_3.81-8.1 man-db_2.6.0.2-2 mawk_1.3.3-15 mount_2.17.2-9.1 multiarch-support_2.13-7 ncurses-base_5.9-1 ncurses-bin_5.9-1 passwd_1:4.1.4.2+svn3283-3 patch_2.6.1-2 perl_5.12.3-7+b1 perl-base_5.12.3-7+b1 perl-modules_5.12.3-7 po-debconf_1.0.16+nmu1 r-base-core_2.13.1-1 r-base-dev_2.13.1-1 readline-common_6.2-2 sed_4.2.1-9 sensible-utils_0.0.6 sudo_1.7.4p6-1 sysv-rc_2.88dsf-13.10 sysvinit_2.88dsf-13.10 sysvinit-utils_2.88dsf-13.10 tar_1.25-3 tcl8.5_8.5.10-1 tk8.5_8.5.10-1 ttf-dejavu-core_2.33-1 tzdata_2011g-1 ucf_3.0025+nmu2 unzip_6.0-5 util-linux_2.17.2-9.1 x11-common_1:7.6+7 xdg-utils_1.1.0~rc1-2 xz-utils_5.0.0-2 zip_3.0-4 zlib1g_1:1.2.3.4.dfsg-3 zlib1g-dev_1:1.2.3.4.dfsg-3
+Reading package lists...
+Building dependency tree...
+Reading state information...
+0 upgraded, 0 newly installed, 0 to remove and 16 not upgraded.
+Checking correctness of dependencies...
+Kernel: Linux 2.6.39-3-loongson-2e mipsel (mips64)
+Toolchain package versions: binutils_2.21.90.20111004-2 dpkg-dev_1.16.1.1 g++-4.6_4.6.2-2 gcc-4.6_4.6.2-2 libc6-dev_2.13-21 libstdc++6_4.6.2-2 libstdc++6-4.6-dev_4.6.2-2 linux-libc-dev_3.0.0-5
+Package versions: apt_0.8.15.9 base-files_6.5 base-passwd_3.5.23 bash_4.1-3 binutils_2.21.90.20111004-2 bsdmainutils_8.2.3 bsdutils_1:2.19.1-5 build-essential_11.5 bzip2_1.0.5-7 cdbs_0.4.99 coreutils_8.13-3 cpp_4:4.6.1-3 cpp-4.6_4.6.2-2 dash_0.5.7-2 debconf_1.5.41 debconf-i18n_1.5.41 debfoster_2.7-1.1 debhelper_8.9.8 debian-archive-keyring_2010.08.28 debianutils_4.0.4 diffutils_1:3.0-1 dpatch_2.0.33 dpkg_1.16.1.1 dpkg-dev_1.16.1.1 e2fslibs_1.42~WIP-2011-10-09-1 e2fsprogs_1.42~WIP-2011-10-09-1 fakeroot_1.18.1-1 file_5.09-2 findutils_4.4.2-1+b1 fontconfig_2.8.0-3 fontconfig-config_2.8.0-3 g++_4:4.6.1-3 g++-4.6_4.6.2-2 gcc_4:4.6.1-3 gcc-4.4-base_4.4.6-11 gcc-4.5-base_4.5.3-9 gcc-4.6_4.6.2-2 gcc-4.6-base_4.6.2-2 gettext_0.18.1.1-5 gettext-base_0.18.1.1-5 gfortran_4:4.6.1-3 gfortran-4.6_4.6.2-2 gnupg_1.4.11-3 gpgv_1.4.11-3 grep_2.9-2 groff-base_1.21-6 gzip_1.4-1 hostname_3.06 html2text_1.3.2a-15 initscripts_2.88dsf-13.12 insserv_1.14.0-2.1 intltool-debian_0.35.0+20060710.1 libacl1_2.2.51-3 libattr1_1:2.4.46-3 libblas-dev_1.2.20110419-2 libblas3gf_1.2.20110419-2 libblkid1_2.19.1-5 libbz2-1.0_1.0.5-7 libbz2-dev_1.0.5-7 libc-bin_2.13-21 libc-dev-bin_2.13-21 libc6_2.13-21 libc6-dev_2.13-21 libcairo2_1.10.2-6.1 libcomerr2_1.42~WIP-2011-10-09-1 libcroco3_0.6.2-2 libdatrie1_0.2.4-3 libdb5.1_5.1.25-11 libdpkg-perl_1.16.1.1 libexpat1_2.0.1-7.1 libfontconfig1_2.8.0-3 libfreetype6_2.4.7-2 libgc1c2_1:7.1-8 libgcc1_1:4.6.2-2 libgdbm3_1.8.3-10 libgfortran3_4.6.2-2 libglib2.0-0_2.28.8-1 libgmp10_2:5.0.2+dfsg-1 libgomp1_4.6.2-2 libice6_2:1.0.7-2 libjpeg8_8c-2 libjpeg8-dev_8c-2 liblapack-dev_3.3.1-1 liblapack3gf_3.3.1-1 liblocale-gettext-perl_1.05-7 liblzma2_5.1.1alpha+20110809-2 liblzma5_5.1.1alpha+20110809-3 libmagic1_5.09-2 libmount1_2.19.1-5 libmpc2_0.9-4 libmpfr4_3.1.0-2 libncurses5_5.9-2 libncurses5-dev_5.9-2 libpam-modules_1.1.3-4 libpam-modules-bin_1.1.3-4 libpam-runtime_1.1.3-4 libpam0g_1.1.3-4 libpango1.0-0_1.29.4-2 libpaper-utils_1.1.24+nmu1 libpaper1_1.1.24+nmu1 libpcre3_8.12-4 libpcre3-dev_8.12-4 libpcrecpp0_8.12-4 libpipeline1_1.2.0-4 libpixman-1-0_0.23.8-1 libpng12-0_1.2.46-3 libpng12-dev_1.2.46-3 libreadline-dev_6.2-7 libreadline6_6.2-7 libreadline6-dev_6.2-7 libselinux1_2.1.0-1 libsepol1_2.1.0-1.1 libslang2_2.2.4-3 libsm6_2:1.2.0-2 libss2_1.42~WIP-2011-10-09-1 libstdc++6_4.6.2-2 libstdc++6-4.6-dev_4.6.2-2 libtext-charwidth-perl_0.04-7 libtext-iconv-perl_1.7-4 libtext-wrapi18n-perl_0.06-7 libthai-data_0.1.15-2 libthai0_0.1.15-2 libtiff4_3.9.5-2 libtimedate-perl_1.2000-1 libtinfo-dev_5.9-2 libtinfo5_5.9-2 libunistring0_0.9.3-5 libusb-0.1-4_2:0.1.12-19 libuuid1_2.19.1-5 libx11-6_2:1.4.4-2 libx11-data_2:1.4.4-2 libxau6_1:1.0.6-3 libxcb-render0_1.7-3 libxcb-shm0_1.7-3 libxcb1_1.7-3 libxdmcp6_1:1.1.0-3 libxext6_2:1.3.0-3 libxft2_2.2.0-3 libxml2_2.7.8.dfsg-5 libxrender1_1:0.9.6-2 libxss1_1:1.2.1-2 libxt6_1:1.1.1-2 linux-libc-dev_3.0.0-5 login_1:4.1.4.2+svn3283-3 lsb-base_3.2-28 make_3.81-8.1 man-db_2.6.0.2-2 mawk_1.3.3-15 mount_2.19.1-5 multiarch-support_2.13-21 ncurses-base_5.9-2 ncurses-bin_5.9-2 passwd_1:4.1.4.2+svn3283-3 patch_2.6.1-2 perl_5.12.4-6 perl-base_5.12.4-6 perl-modules_5.12.4-6 po-debconf_1.0.16+nmu1 r-base-core_2.14.0-1 r-base-dev_2.14.0-1 readline-common_6.2-7 sed_4.2.1-9 sensible-utils_0.0.6 sudo_1.8.2-2 sysv-rc_2.88dsf-13.12 sysvinit_2.88dsf-13.12 sysvinit-utils_2.88dsf-13.12 tar_1.26-2 tcl8.5_8.5.10-1 tk8.5_8.5.10-1 ttf-dejavu-core_2.33-2 tzdata_2011l-1 ucf_3.0025+nmu2 unzip_6.0-5 util-linux_2.19.1-5 x11-common_1:7.6+9 xdg-utils_1.1.0~rc1-2 xz-utils_5.1.1alpha+20110809-2 zip_3.0-4 zlib1g_1:1.2.3.4.dfsg-3 zlib1g-dev_1:1.2.3.4.dfsg-3
┌──────────────────────────────────────────────────────────────────────────────┐
│ Build │
@@ -1579,12 +1457,12 @@ Unpack source
─────────────
gpgv: keyblock resource `/home/buildd/.gnupg/trustedkeys.gpg': file open error
-gpgv: Signature made Thu Aug 4 00:12:34 2011 UTC using RSA key ID 2295D502
+gpgv: Signature made Wed Nov 2 05:31:37 2011 UTC using RSA key ID 2295D502
gpgv: Can't check signature: public key not found
-dpkg-source: warning: failed to verify signature on ./r-bioc-biobase_2.12.2-1.dsc
-dpkg-source: info: extracting r-bioc-biobase in r-bioc-biobase-2.12.2
-dpkg-source: info: unpacking r-bioc-biobase_2.12.2.orig.tar.gz
-dpkg-source: info: applying r-bioc-biobase_2.12.2-1.diff.gz
+dpkg-source: warning: failed to verify signature on ./r-bioc-biobase_2.14.0-1.dsc
+dpkg-source: info: extracting r-bioc-biobase in r-bioc-biobase-2.14.0
+dpkg-source: info: unpacking r-bioc-biobase_2.14.0.orig.tar.gz
+dpkg-source: info: applying r-bioc-biobase_2.14.0-1.diff.gz
Check disc space
────────────────
@@ -1593,24 +1471,19 @@ Check disc space
dpkg-buildpackage
─────────────────
-dpkg-buildpackage: export CFLAGS from dpkg-buildflags (origin: vendor): -g -O2
-dpkg-buildpackage: export CPPFLAGS from dpkg-buildflags (origin: vendor):
-dpkg-buildpackage: export CXXFLAGS from dpkg-buildflags (origin: vendor): -g -O2
-dpkg-buildpackage: export FFLAGS from dpkg-buildflags (origin: vendor): -g -O2
-dpkg-buildpackage: export LDFLAGS from dpkg-buildflags (origin: vendor):
dpkg-buildpackage: source package r-bioc-biobase
-dpkg-buildpackage: source version 2.12.2-1
- dpkg-source --before-build r-bioc-biobase-2.12.2
+dpkg-buildpackage: source version 2.14.0-1
+ dpkg-source --before-build r-bioc-biobase-2.14.0
dpkg-buildpackage: host architecture mipsel
- /usr/bin/fakeroot debian/rules clean
+ fakeroot debian/rules clean
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
test -x debian/rules
dh_testroot
/usr/bin/make -f debian/rules reverse-config
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
-make[1]: Entering directory `/build/buildd-r-bioc-biobase_2.12.2-1-mipsel-VAOhJw/r-bioc-biobase-2.12.2'
+make[1]: Entering directory `/build/buildd-r-bioc-biobase_2.14.0-1-mipsel-e8fesc/r-bioc-biobase-2.14.0'
make[1]: Nothing to be done for `reverse-config'.
-make[1]: Leaving directory `/build/buildd-r-bioc-biobase_2.12.2-1-mipsel-VAOhJw/r-bioc-biobase-2.12.2'
+make[1]: Leaving directory `/build/buildd-r-bioc-biobase_2.14.0-1-mipsel-e8fesc/r-bioc-biobase-2.14.0'
if [ "reverse-patches" = "reverse-patches" ]; then rm -f debian/stamp-patched; fi
patches:
if [ "reverse-patches" != "reverse-patches" ]; then touch debian/stamp-patched; fi
@@ -1630,11 +1503,12 @@ rm -f config.log config.status
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
test -x debian/rules
mkdir -p "."
+/usr/share/cdbs/1/rules/buildcore.mk:109: WARNING: DEB_DH_BUILDDEB_ARGS is a deprecated variable
/usr/bin/make -f debian/rules reverse-config
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
-make[1]: Entering directory `/build/buildd-r-bioc-biobase_2.12.2-1-mipsel-VAOhJw/r-bioc-biobase-2.12.2'
+make[1]: Entering directory `/build/buildd-r-bioc-biobase_2.14.0-1-mipsel-e8fesc/r-bioc-biobase-2.14.0'
make[1]: Nothing to be done for `reverse-config'.
-make[1]: Leaving directory `/build/buildd-r-bioc-biobase_2.12.2-1-mipsel-VAOhJw/r-bioc-biobase-2.12.2'
+make[1]: Leaving directory `/build/buildd-r-bioc-biobase_2.14.0-1-mipsel-e8fesc/r-bioc-biobase-2.14.0'
if [ "debian/stamp-patched" = "reverse-patches" ]; then rm -f debian/stamp-patched; fi
patches:
if [ "debian/stamp-patched" != "reverse-patches" ]; then touch debian/stamp-patched; fi
@@ -1642,39 +1516,40 @@ if [ "debian/stamp-patched" != "reverse-patches" ] ; then \
/usr/bin/make -f debian/rules update-config ; \
fi
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
-make[1]: Entering directory `/build/buildd-r-bioc-biobase_2.12.2-1-mipsel-VAOhJw/r-bioc-biobase-2.12.2'
+make[1]: Entering directory `/build/buildd-r-bioc-biobase_2.14.0-1-mipsel-e8fesc/r-bioc-biobase-2.14.0'
make[1]: Nothing to be done for `update-config'.
-make[1]: Leaving directory `/build/buildd-r-bioc-biobase_2.12.2-1-mipsel-VAOhJw/r-bioc-biobase-2.12.2'
- /usr/bin/fakeroot debian/rules binary-arch
+make[1]: Leaving directory `/build/buildd-r-bioc-biobase_2.14.0-1-mipsel-e8fesc/r-bioc-biobase-2.14.0'
+ fakeroot debian/rules binary-arch
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
test -x debian/rules
dh_testroot
dh_prep
dh_installdirs -A
mkdir -p "."
+/usr/share/cdbs/1/rules/buildcore.mk:109: WARNING: DEB_DH_BUILDDEB_ARGS is a deprecated variable
dh_installdirs usr/lib/R/site-library
if test -f /usr/bin/xvfb-run; then \
xvfb-run -a \
- R CMD INSTALL -l /build/buildd-r-bioc-biobase_2.12.2-1-mipsel-VAOhJw/r-bioc-biobase-2.12.2/debian/r-bioc-biobase/usr/lib/R/site-library --clean \
+ R CMD INSTALL -l /build/buildd-r-bioc-biobase_2.14.0-1-mipsel-e8fesc/r-bioc-biobase-2.14.0/debian/r-bioc-biobase/usr/lib/R/site-library --clean \
. ; \
else \
- R CMD INSTALL -l /build/buildd-r-bioc-biobase_2.12.2-1-mipsel-VAOhJw/r-bioc-biobase-2.12.2/debian/r-bioc-biobase/usr/lib/R/site-library \
+ R CMD INSTALL -l /build/buildd-r-bioc-biobase_2.14.0-1-mipsel-e8fesc/r-bioc-biobase-2.14.0/debian/r-bioc-biobase/usr/lib/R/site-library \
--clean . ;\
fi
* installing *source* package 'Biobase' ...
** libs
-make[1]: Entering directory `/build/buildd-r-bioc-biobase_2.12.2-1-mipsel-VAOhJw/r-bioc-biobase-2.12.2/src'
-gcc -I/usr/share/R/include -fpic -std=gnu99 -g0 -g -c Rinit.c -o Rinit.o
-gcc -I/usr/share/R/include -fpic -std=gnu99 -g0 -g -c anyMissing.c -o anyMissing.o
-gcc -I/usr/share/R/include -fpic -std=gnu99 -g0 -g -c envir.c -o envir.o
-gcc -I/usr/share/R/include -fpic -std=gnu99 -g0 -g -c matchpt.c -o matchpt.o
-gcc -I/usr/share/R/include -fpic -std=gnu99 -g0 -g -c rowMedians.c -o rowMedians.o
-gcc -I/usr/share/R/include -fpic -std=gnu99 -g0 -g -c sublist_extract.c -o sublist_extract.o
-gcc -shared -o Biobase.so Rinit.o anyMissing.o envir.o matchpt.o rowMedians.o sublist_extract.o -L/usr/lib/R/lib -lR
-make[1]: Leaving directory `/build/buildd-r-bioc-biobase_2.12.2-1-mipsel-VAOhJw/r-bioc-biobase-2.12.2/src'
-make[1]: Entering directory `/build/buildd-r-bioc-biobase_2.12.2-1-mipsel-VAOhJw/r-bioc-biobase-2.12.2/src'
-make[1]: Leaving directory `/build/buildd-r-bioc-biobase_2.12.2-1-mipsel-VAOhJw/r-bioc-biobase-2.12.2/src'
-installing to /build/buildd-r-bioc-biobase_2.12.2-1-mipsel-VAOhJw/r-bioc-biobase-2.12.2/debian/r-bioc-biobase/usr/lib/R/site-library/Biobase/libs
+make[1]: Entering directory `/build/buildd-r-bioc-biobase_2.14.0-1-mipsel-e8fesc/r-bioc-biobase-2.14.0/src'
+gcc -std=gnu99 -I/usr/share/R/include -fpic -g0 -g -c Rinit.c -o Rinit.o
+gcc -std=gnu99 -I/usr/share/R/include -fpic -g0 -g -c anyMissing.c -o anyMissing.o
+gcc -std=gnu99 -I/usr/share/R/include -fpic -g0 -g -c envir.c -o envir.o
+gcc -std=gnu99 -I/usr/share/R/include -fpic -g0 -g -c matchpt.c -o matchpt.o
+gcc -std=gnu99 -I/usr/share/R/include -fpic -g0 -g -c rowMedians.c -o rowMedians.o
+gcc -std=gnu99 -I/usr/share/R/include -fpic -g0 -g -c sublist_extract.c -o sublist_extract.o
+gcc -std=gnu99 -shared -o Biobase.so Rinit.o anyMissing.o envir.o matchpt.o rowMedians.o sublist_extract.o -L/usr/lib/R/lib -lR
+make[1]: Leaving directory `/build/buildd-r-bioc-biobase_2.14.0-1-mipsel-e8fesc/r-bioc-biobase-2.14.0/src'
+make[1]: Entering directory `/build/buildd-r-bioc-biobase_2.14.0-1-mipsel-e8fesc/r-bioc-biobase-2.14.0/src'
+make[1]: Leaving directory `/build/buildd-r-bioc-biobase_2.14.0-1-mipsel-e8fesc/r-bioc-biobase-2.14.0/src'
+installing to /build/buildd-r-bioc-biobase_2.14.0-1-mipsel-e8fesc/r-bioc-biobase-2.14.0/debian/r-bioc-biobase/usr/lib/R/site-library/Biobase/libs
** R
** data
** inst
@@ -1682,20 +1557,27 @@ installing to /build/buildd-r-bioc-biobase_2.12.2-1-mipsel-VAOhJw/r-bioc-biobase
** help
*** installing help indices
** building package indices ...
+*** tangling vignette sources ...
+ 'BiobaseDevelopment.Rnw'
+ 'Bioconductor.Rnw'
+ 'ExpressionSetIntroduction.Rnw'
+ 'HowTo.Rnw'
+ 'Qviews.Rnw'
+ 'esApply.Rnw'
** testing if installed package can be loaded
* DONE (Biobase)
-rm -vf /build/buildd-r-bioc-biobase_2.12.2-1-mipsel-VAOhJw/r-bioc-biobase-2.12.2/debian/r-bioc-biobase/usr/lib/R/site-library/R.css \
- /build/buildd-r-bioc-biobase_2.12.2-1-mipsel-VAOhJw/r-bioc-biobase-2.12.2/debian/r-bioc-biobase/usr/lib/R/site-library/Biobase/COPYING \
- /build/buildd-r-bioc-biobase_2.12.2-1-mipsel-VAOhJw/r-bioc-biobase-2.12.2/debian/r-bioc-biobase/usr/lib/R/site-library/Biobase/LICENSE.txt
+rm -vf /build/buildd-r-bioc-biobase_2.14.0-1-mipsel-e8fesc/r-bioc-biobase-2.14.0/debian/r-bioc-biobase/usr/lib/R/site-library/R.css \
+ /build/buildd-r-bioc-biobase_2.14.0-1-mipsel-e8fesc/r-bioc-biobase-2.14.0/debian/r-bioc-biobase/usr/lib/R/site-library/Biobase/COPYING \
+ /build/buildd-r-bioc-biobase_2.14.0-1-mipsel-e8fesc/r-bioc-biobase-2.14.0/debian/r-bioc-biobase/usr/lib/R/site-library/Biobase/LICENSE.txt
if test -f debian/overrides; then \
- install -d /build/buildd-r-bioc-biobase_2.12.2-1-mipsel-VAOhJw/r-bioc-biobase-2.12.2/debian/r-bioc-biobase/usr/share/lintian/overrides ; \
+ install -d /build/buildd-r-bioc-biobase_2.14.0-1-mipsel-e8fesc/r-bioc-biobase-2.14.0/debian/r-bioc-biobase/usr/share/lintian/overrides ; \
install -m 0644 debian/overrides \
- /build/buildd-r-bioc-biobase_2.12.2-1-mipsel-VAOhJw/r-bioc-biobase-2.12.2/debian/r-bioc-biobase/usr/share/lintian/overrides/r-bioc-biobase; \
+ /build/buildd-r-bioc-biobase_2.14.0-1-mipsel-e8fesc/r-bioc-biobase-2.14.0/debian/r-bioc-biobase/usr/share/lintian/overrides/r-bioc-biobase; \
fi
Adding cdbs dependencies to debian/r-bioc-biobase.substvars
dh_installdirs -pr-bioc-biobase
-echo "R:Depends=r-base-core (>= 2.13.1~)" >> debian/r-bioc-biobase.substvars
+echo "R:Depends=r-base-core (>= 2.14.0~)" >> debian/r-bioc-biobase.substvars
dh_installdocs -pr-bioc-biobase ./NEWS
dh_installexamples -pr-bioc-biobase
dh_installman -pr-bioc-biobase
@@ -1726,58 +1608,62 @@ dh_perl -pr-bioc-biobase
dh_shlibdeps -pr-bioc-biobase
dh_gencontrol -pr-bioc-biobase
dh_md5sums -pr-bioc-biobase
-dh_builddeb -pr-bioc-biobase
-dpkg-deb: building package `r-bioc-biobase' in `../r-bioc-biobase_2.12.2-1_mipsel.deb'.
- dpkg-genchanges -B -mmipsel Build Daemon (phrixos) <buildd_mipsel-phrixos at buildd.debian.org> >../r-bioc-biobase_2.12.2-1_mipsel.changes
+dh_builddeb -pr-bioc-biobase -- -Z xz
+dpkg-deb: building package `r-bioc-biobase' in `../r-bioc-biobase_2.14.0-1_mipsel.deb'.
+ dpkg-genchanges -B -mmipsel Build Daemon (eysler) <buildd_mipsel-eysler at buildd.debian.org> >../r-bioc-biobase_2.14.0-1_mipsel.changes
dpkg-genchanges: arch-specific upload - not including arch-independent packages
dpkg-genchanges: binary-only upload - not including any source code
- dpkg-source --after-build r-bioc-biobase-2.12.2
+ dpkg-source --after-build r-bioc-biobase-2.14.0
dpkg-buildpackage: binary only upload (no source included)
────────────────────────────────────────────────────────────────────────────────
-Build finished at 20110804-0032
+Build finished at 20111102-0728
-r-bioc-biobase_2.12.2-1_mipsel.changes:
+r-bioc-biobase_2.14.0-1_mipsel.changes:
Format: 1.8
-Date: Thu, 04 Aug 2011 08:58:03 +0900
+Date: Wed, 02 Nov 2011 13:52:04 +0900
Source: r-bioc-biobase
Binary: r-bioc-biobase
Architecture: mipsel
-Version: 2.12.2-1
+Version: 2.14.0-1
Distribution: sid
Urgency: low
-Maintainer: mipsel Build Daemon (phrixos) <buildd_mipsel-phrixos at buildd.debian.org>
+Maintainer: mipsel Build Daemon (eysler) <buildd_mipsel-eysler at buildd.debian.org>
Changed-By: Charles Plessy <plessy at debian.org>
Description:
r-bioc-biobase - base functions for Bioconductor
Changes:
- r-bioc-biobase (2.12.2-1) unstable; urgency=low
+ r-bioc-biobase (2.14.0-1) unstable; urgency=low
.
- * New upstream release.
+ [cb6b786] Bioconductor release 2.9.
+ [d70e490] Build-Depend on R >= 2.10 according to DESCRIPTION.
+ [ae99e35] Include 7 digits of the commit id in the changelog entry.
+ [33b5d47] Compress binary package with xz.
Checksums-Sha1:
- 35a20f1b3fb456af6fa404e7df43a21134ee9327 2666380 r-bioc-biobase_2.12.2-1_mipsel.deb
+ b90e1367ad9d9e026cf333720cff56ec8cad68d9 2313674 r-bioc-biobase_2.14.0-1_mipsel.deb
Checksums-Sha256:
- 134c329de1330c32f09ad5abb8a6b5d766e97260cd2c021adf683487ca084977 2666380 r-bioc-biobase_2.12.2-1_mipsel.deb
+ 189e8fffecbd2e34dac3e184755c25c118c9c1291435443dc333ef0cb4bfd13f 2313674 r-bioc-biobase_2.14.0-1_mipsel.deb
Files:
- dbe3267a3ec803560c37c8f83bfec3b3 2666380 gnu-r optional r-bioc-biobase_2.12.2-1_mipsel.deb
+ e6ce649f7f89264a19c8dcffec78c8ed 2313674 gnu-r optional r-bioc-biobase_2.14.0-1_mipsel.deb
┌──────────────────────────────────────────────────────────────────────────────┐
│ Package contents │
└──────────────────────────────────────────────────────────────────────────────┘
-r-bioc-biobase_2.12.2-1_mipsel.deb
+r-bioc-biobase_2.14.0-1_mipsel.deb
──────────────────────────────────
new debian package, version 2.0.
- size 2666380 bytes: control archive= 4946 bytes.
- 1188 bytes, 25 lines control
+ size 2313674 bytes: control archive= 4961 bytes.
+ 1218 bytes, 26 lines control
13314 bytes, 141 lines md5sums
Package: r-bioc-biobase
- Version: 2.12.2-1
+ Version: 2.14.0-1
Architecture: mipsel
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
- Installed-Size: 3804
- Depends: libc6 (>= 2.2), r-base-core (>= 2.13.1~)
+ Installed-Size: 3074
+ Pre-Depends: dpkg (>= 1.15.6)
+ Depends: libc6 (>= 2.2), r-base-core (>= 2.14.0~)
Section: gnu-r
Priority: optional
Homepage: http://www.bioconductor.org
@@ -1798,177 +1684,177 @@ r-bioc-biobase_2.12.2-1_mipsel.deb
unofficial auto-generated Bioconductor packages for Debian and Ubuntu systems,
that are prepared by members of the Debian Med team.
-drwxr-xr-x root/root 0 2011-08-04 00:31 ./
-drwxr-xr-x root/root 0 2011-08-04 00:31 ./usr/
-drwxr-xr-x root/root 0 2011-08-04 00:31 ./usr/share/
-drwxr-xr-x root/root 0 2011-08-04 00:31 ./usr/share/doc/
-drwxr-xr-x root/root 0 2011-08-04 00:31 ./usr/share/doc/r-bioc-biobase/
--rw-r--r-- root/root 1380 2011-07-01 16:14 ./usr/share/doc/r-bioc-biobase/NEWS.gz
--rw-r--r-- root/root 392 2011-08-04 00:29 ./usr/share/doc/r-bioc-biobase/README.Debian
--rw-r--r-- root/root 10574 2011-08-04 00:29 ./usr/share/doc/r-bioc-biobase/copyright
--rw-r--r-- root/root 203 2011-08-04 00:29 ./usr/share/doc/r-bioc-biobase/changelog.Debian.gz
-drwxr-xr-x root/root 0 2011-08-04 00:29 ./usr/lib/
-drwxr-xr-x root/root 0 2011-08-04 00:29 ./usr/lib/R/
-drwxr-xr-x root/root 0 2011-08-04 00:31 ./usr/lib/R/site-library/
-drwxr-xr-x root/root 0 2011-08-04 00:31 ./usr/lib/R/site-library/Biobase/
--rw-r--r-- root/root 1266 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/DESCRIPTION
-drwxr-xr-x root/root 0 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/ExpressionSet/
--rw-r--r-- root/root 212 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/ExpressionSet/DESCRIPTION
-drwxr-xr-x root/root 0 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/ExpressionSet/man/
--rw-r--r-- root/root 180 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/ExpressionSet/man/@PKGNAME at .Rd
--rw-r--r-- root/root 6600 2011-08-04 00:31 ./usr/lib/R/site-library/Biobase/INDEX
-drwxr-xr-x root/root 0 2011-08-04 00:31 ./usr/lib/R/site-library/Biobase/help/
--rw-r--r-- root/root 3321 2011-08-04 00:31 ./usr/lib/R/site-library/Biobase/help/aliases.rds
--rw-r--r-- root/root 242376 2011-08-04 00:31 ./usr/lib/R/site-library/Biobase/help/Biobase.rdb
--rw-r--r-- root/root 853 2011-08-04 00:31 ./usr/lib/R/site-library/Biobase/help/paths.rds
--rw-r--r-- root/root 14396 2011-08-04 00:31 ./usr/lib/R/site-library/Biobase/help/AnIndex
--rw-r--r-- root/root 1998 2011-08-04 00:31 ./usr/lib/R/site-library/Biobase/help/Biobase.rdx
--rw-r--r-- root/root 650 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/CITATION
--rw-r--r-- root/root 516 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/testClass.R
-drwxr-xr-x root/root 0 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/R/
--rw-r--r-- root/root 384 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/R/Biobase
--rw-r--r-- root/root 363978 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/R/Biobase.rdb
--rw-r--r-- root/root 8703 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/R/Biobase.rdx
-drwxr-xr-x root/root 0 2011-08-04 00:31 ./usr/lib/R/site-library/Biobase/libs/
--rw-r--r-- root/root 25868 2011-08-04 00:31 ./usr/lib/R/site-library/Biobase/libs/Biobase.so
-drwxr-xr-x root/root 0 2011-08-04 00:31 ./usr/lib/R/site-library/Biobase/doc/
--rw-r--r-- root/root 18067 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/doc/ExpressionSetIntroduction.Rnw
--rw-r--r-- root/root 5030 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/doc/Qviews.Rnw
--rw-r--r-- root/root 220 2011-08-04 00:31 ./usr/lib/R/site-library/Biobase/doc/Bioconductor.R
--rw-r--r-- root/root 110288 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/doc/esApply.pdf
--rw-r--r-- root/root 8004 2011-08-04 00:31 ./usr/lib/R/site-library/Biobase/doc/BiobaseDevelopment.R
--rw-r--r-- root/root 3048 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/doc/HowTo.Rnw
--rw-r--r-- root/root 267601 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/doc/BiobaseDevelopment.pdf
--rw-r--r-- root/root 3727 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/doc/esApply.Rnw
--rw-r--r-- root/root 6656 2011-08-04 00:31 ./usr/lib/R/site-library/Biobase/doc/ExpressionSetIntroduction.R
--rw-r--r-- root/root 3067 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/doc/Bioconductor.Rnw
--rw-r--r-- root/root 79071 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/doc/Qviews.pdf
--rw-r--r-- root/root 197875 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/doc/ExpressionSetIntroduction.pdf
--rw-r--r-- root/root 60322 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/doc/HowTo.pdf
--rw-r--r-- root/root 76653 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/doc/Bioconductor.pdf
-drwxr-xr-x root/root 0 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/doc/legacy/
--rw-r--r-- root/root 13630 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/doc/legacy/Biobase.Rnw
--rw-r--r-- root/root 206 2011-08-04 00:31 ./usr/lib/R/site-library/Biobase/doc/HowTo.R
--rw-r--r-- root/root 28377 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/doc/BiobaseDevelopment.Rnw
--rw-r--r-- root/root 1426 2011-08-04 00:31 ./usr/lib/R/site-library/Biobase/doc/index.html
--rw-r--r-- root/root 3987 2011-08-04 00:31 ./usr/lib/R/site-library/Biobase/doc/Qviews.R
--rw-r--r-- root/root 1591 2011-08-04 00:31 ./usr/lib/R/site-library/Biobase/doc/esApply.R
--rw-r--r-- root/root 3988 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/NEWS
-drwxr-xr-x root/root 0 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/scripts/
--rw-r--r-- root/root 1213 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/scripts/getBioCHelp
--rw-r--r-- root/root 1122 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/scripts/getBioCPkgNames.R
--rw-r--r-- root/root 6808 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/scripts/query.packages.R
--rw-r--r-- root/root 5365 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/scripts/getBioC.R
--rw-r--r-- root/root 774 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/scripts/esetTesting.R
--rw-r--r-- root/root 2008 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/scripts/makeExpressionSetPackage.R
-drwxr-xr-x root/root 0 2011-08-04 00:31 ./usr/lib/R/site-library/Biobase/html/
--rw-r--r-- root/root 51239 2011-08-04 00:31 ./usr/lib/R/site-library/Biobase/html/00Index.html
--rw-r--r-- root/root 1179 2011-08-04 00:31 ./usr/lib/R/site-library/Biobase/html/R.css
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+-rw-r--r-- root/root 6194 2011-11-02 07:27 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/raw/exprs.tab
+-rw-r--r-- root/root 423 2011-11-02 07:27 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/raw/varMetadata.tab
+drwxr-xr-x root/root 0 2011-11-02 07:27 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/2.0/
+-rw-r--r-- root/root 110 2011-11-02 07:27 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/2.0/VersionsNull.Rda
+-rw-r--r-- root/root 105 2011-11-02 07:27 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/2.0/Versions.Rda
+-rw-r--r-- root/root 4822 2011-11-02 07:27 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/2.0/ExpressionSet.Rda
+-rw-r--r-- root/root 183 2011-11-02 07:27 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/2.0/VersionedBiobase.Rda
+-rw-r--r-- root/root 227 2011-11-02 07:27 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/2.0/aggregator.Rda
+-rw-r--r-- root/root 998 2011-11-02 07:27 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/2.0/phenoData.Rda
+-rw-r--r-- root/root 4705 2011-11-02 07:27 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/2.0/exprSet.Rda
+-rw-r--r-- root/root 143 2011-11-02 07:27 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/2.0/Versioned.Rda
+-rw-r--r-- root/root 609 2011-11-02 07:27 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/2.0/SnpSet.Rda
+-rw-r--r-- root/root 555 2011-11-02 07:27 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/2.0/MultiSet.Rda
+-rw-r--r-- root/root 1014 2011-11-02 07:27 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/2.0/AnnotatedDataFrame.Rda
+-rw-r--r-- root/root 146 2011-11-02 07:27 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/2.0/container.Rda
+-rw-r--r-- root/root 795 2011-11-02 07:27 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/2.0/MIAME.Rda
+-rw-r--r-- root/root 113 2011-11-02 07:27 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/2.0/ScalarCharacter.Rda
+drwxr-xr-x root/root 0 2011-11-02 07:27 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/1.8/
+-rw-r--r-- root/root 4678 2011-11-02 07:27 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/1.8/ExpressionSet.Rda
+-rw-r--r-- root/root 943 2011-11-02 07:27 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/1.8/phenoData.Rda
+-rw-r--r-- root/root 4588 2011-11-02 07:27 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/1.8/exprSet.Rda
+-rw-r--r-- root/root 939 2011-11-02 07:27 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/1.8/AnnotatedDataFrame.Rda
+-rw-r--r-- root/root 741 2011-11-02 07:27 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/1.8/MIAME.Rda
+drwxr-xr-x root/root 0 2011-11-02 07:27 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/
+-rw-r--r-- root/root 112 2011-11-02 07:27 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/VersionsNull.Rda
+-rw-r--r-- root/root 105 2011-11-02 07:27 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/Versions.Rda
+-rw-r--r-- root/root 5537 2011-11-02 07:27 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/ExpressionSet.Rda
+-rw-r--r-- root/root 183 2011-11-02 07:27 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/VersionedBiobase.Rda
+-rw-r--r-- root/root 231 2011-11-02 07:27 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/aggregator.Rda
+-rw-r--r-- root/root 802 2011-11-02 07:27 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/NChannelSet.Rda
+-rw-r--r-- root/root 62219 2011-11-02 07:27 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/sample.exprSet.1.rda
+-rw-r--r-- root/root 524 2011-11-02 07:27 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/SWPD.rda
+-rw-r--r-- root/root 25005 2011-11-02 07:27 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/sample.eSet.rda
+-rw-r--r-- root/root 4704 2011-11-02 07:27 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/exprSet.Rda
+-rw-r--r-- root/root 143 2011-11-02 07:27 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/Versioned.Rda
+-rw-r--r-- root/root 62201 2011-11-02 07:27 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/eset.rda
+-rw-r--r-- root/root 76485 2011-11-02 07:27 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/bbsym.rda
+-rw-r--r-- root/root 1235 2011-11-02 07:27 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/SnpSet.Rda
+-rw-r--r-- root/root 1166 2011-11-02 07:27 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/MultiSet.Rda
+-rw-r--r-- root/root 1016 2011-11-02 07:27 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/AnnotatedDataFrame.Rda
+-rw-r--r-- root/root 92336 2011-11-02 07:27 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/sample.exprSet.rda
+-rw-r--r-- root/root 167662 2011-11-02 07:27 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/golubMergeSub.rda
+-rw-r--r-- root/root 95238 2011-11-02 07:27 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/swrep.rda
+-rw-r--r-- root/root 146 2011-11-02 07:27 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/container.Rda
+-rw-r--r-- root/root 795 2011-11-02 07:27 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/MIAME.Rda
+-rw-r--r-- root/root 113 2011-11-02 07:27 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/ScalarCharacter.Rda
+-rw-r--r-- root/root 951 2011-11-02 07:27 ./usr/lib/R/site-library/Biobase/UnitTests/cache_test.R
+-rw-r--r-- root/root 477 2011-11-02 07:27 ./usr/lib/R/site-library/Biobase/UnitTests/runalltests.R
+-rw-r--r-- root/root 580 2011-11-02 07:27 ./usr/lib/R/site-library/Biobase/UnitTests/SnpSet_test.R
+-rw-r--r-- root/root 8317 2011-11-02 07:27 ./usr/lib/R/site-library/Biobase/UnitTests/NChannelSet_test.R
+-rw-r--r-- root/root 6194 2011-11-02 07:27 ./usr/lib/R/site-library/Biobase/UnitTests/ExpressionSet_test.R
+drwxr-xr-x root/root 0 2011-11-02 07:27 ./usr/lib/R/site-library/Biobase/Code/
+drwxr-xr-x root/root 0 2011-11-02 07:27 ./usr/lib/R/site-library/Biobase/Code/R/
+-rw-r--r-- root/root 91 2011-11-02 07:27 ./usr/lib/R/site-library/Biobase/Code/R/get at PKGNAME@.R
+-rw-r--r-- root/root 201 2011-11-02 07:27 ./usr/lib/R/site-library/Biobase/Code/DESCRIPTION
+drwxr-xr-x root/root 0 2011-11-02 07:27 ./usr/lib/R/site-library/Biobase/Code/man/
+-rw-r--r-- root/root 487 2011-11-02 07:27 ./usr/lib/R/site-library/Biobase/Code/man/@PKGNAME at .Rd
+-rw-r--r-- root/root 350 2011-11-02 07:27 ./usr/lib/R/site-library/Biobase/Code/man/get at PKGNAME@.Rd
+drwxr-xr-x root/root 0 2011-11-02 07:27 ./usr/lib/R/site-library/Biobase/data/
+-rw-r--r-- root/root 73240 2011-11-02 07:27 ./usr/lib/R/site-library/Biobase/data/sample.ExpressionSet.rda
+-rw-r--r-- root/root 2032 2011-11-02 07:27 ./usr/lib/R/site-library/Biobase/data/reporter.rda
+-rw-r--r-- root/root 501 2011-11-02 07:27 ./usr/lib/R/site-library/Biobase/data/geneCov.R
+-rw-r--r-- root/root 18025 2011-11-02 07:27 ./usr/lib/R/site-library/Biobase/data/seD.rda
+-rw-r--r-- root/root 19920 2011-11-02 07:27 ./usr/lib/R/site-library/Biobase/data/sample.MultiSet.rda
+-rw-r--r-- root/root 115 2011-11-02 07:27 ./usr/lib/R/site-library/Biobase/data/sample.exprSet.R
+-rw-r--r-- root/root 125627 2011-11-02 07:27 ./usr/lib/R/site-library/Biobase/data/geneData.R
+-rw-r--r-- root/root 1556 2011-11-02 07:27 ./usr/lib/R/site-library/Biobase/data/aaMap.R
+-rw-r--r-- root/root 267752 2011-11-02 07:27 ./usr/lib/R/site-library/Biobase/data/SW.rda
+-rw-r--r-- root/root 435 2011-11-02 07:27 ./usr/lib/R/site-library/Biobase/data/geneCovariate.rda
+-rw-r--r-- root/root 107 2011-11-02 07:27 ./usr/lib/R/site-library/Biobase/data/sample.eSet.R
+-rw-r--r-- root/root 117 2011-11-02 07:27 ./usr/lib/R/site-library/Biobase/data/sample.exprSet.1.R
+-rw-r--r-- root/root 516 2011-11-02 07:27 ./usr/lib/R/site-library/Biobase/testClass.R
+-rw-r--r-- root/root 3988 2011-11-02 07:26 ./usr/lib/R/site-library/Biobase/NEWS
+-rw-r--r-- root/root 1264 2011-11-02 07:26 ./usr/lib/R/site-library/Biobase/DESCRIPTION
+drwxr-xr-x root/root 0 2011-11-02 07:28 ./usr/lib/R/site-library/Biobase/Meta/
+-rw-r--r-- root/root 1445 2011-11-02 07:28 ./usr/lib/R/site-library/Biobase/Meta/nsInfo.rds
+-rw-r--r-- root/root 475 2011-11-02 07:28 ./usr/lib/R/site-library/Biobase/Meta/vignette.rds
+-rw-r--r-- root/root 3554 2011-11-02 07:27 ./usr/lib/R/site-library/Biobase/Meta/links.rds
+-rw-r--r-- root/root 5810 2011-11-02 07:27 ./usr/lib/R/site-library/Biobase/Meta/hsearch.rds
+-rw-r--r-- root/root 1001 2011-11-02 07:26 ./usr/lib/R/site-library/Biobase/Meta/package.rds
+-rw-r--r-- root/root 323 2011-11-02 07:28 ./usr/lib/R/site-library/Biobase/Meta/data.rds
+-rw-r--r-- root/root 5798 2011-11-02 07:27 ./usr/lib/R/site-library/Biobase/Meta/Rd.rds
+drwxr-xr-x root/root 0 2011-11-02 07:27 ./usr/lib/R/site-library/Biobase/extdata/
+-rw-r--r-- root/root 715 2011-11-02 07:27 ./usr/lib/R/site-library/Biobase/extdata/pData.txt
+-rw-r--r-- root/root 109039 2011-11-02 07:27 ./usr/lib/R/site-library/Biobase/extdata/exprsData.txt
+drwxr-xr-x root/root 0 2011-11-02 07:28 ./usr/lib/R/site-library/Biobase/libs/
+-rw-r--r-- root/root 25868 2011-11-02 07:28 ./usr/lib/R/site-library/Biobase/libs/Biobase.so
+drwxr-xr-x root/root 0 2011-11-02 07:27 ./usr/lib/R/site-library/Biobase/ExpressionSet/
+-rw-r--r-- root/root 212 2011-11-02 07:27 ./usr/lib/R/site-library/Biobase/ExpressionSet/DESCRIPTION
+drwxr-xr-x root/root 0 2011-11-02 07:27 ./usr/lib/R/site-library/Biobase/ExpressionSet/man/
+-rw-r--r-- root/root 180 2011-11-02 07:27 ./usr/lib/R/site-library/Biobase/ExpressionSet/man/@PKGNAME at .Rd
+drwxr-xr-x root/root 0 2011-11-02 07:27 ./usr/lib/R/site-library/Biobase/scripts/
+-rw-r--r-- root/root 2008 2011-11-02 07:27 ./usr/lib/R/site-library/Biobase/scripts/makeExpressionSetPackage.R
+-rw-r--r-- root/root 1213 2011-11-02 07:27 ./usr/lib/R/site-library/Biobase/scripts/getBioCHelp
+-rw-r--r-- root/root 6808 2011-11-02 07:27 ./usr/lib/R/site-library/Biobase/scripts/query.packages.R
+-rw-r--r-- root/root 5365 2011-11-02 07:27 ./usr/lib/R/site-library/Biobase/scripts/getBioC.R
+-rw-r--r-- root/root 1122 2011-11-02 07:27 ./usr/lib/R/site-library/Biobase/scripts/getBioCPkgNames.R
+-rw-r--r-- root/root 774 2011-11-02 07:27 ./usr/lib/R/site-library/Biobase/scripts/esetTesting.R
+-rw-r--r-- root/root 3234 2011-11-02 07:26 ./usr/lib/R/site-library/Biobase/NAMESPACE
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -1977,9 +1863,32 @@ drwxr-xr-x root/root 0 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase
Built successfully
────────────────────────────────────────────────────────────────────────────────
-Purging /var/lib/schroot/mount/sid-mipsel-sbuild-4967957a-d166-4db3-bea7-f133e9169010/build/buildd-r-bioc-biobase_2.12.2-1-mipsel-VAOhJw
-Not removing build depends: cloned chroot in use
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Post Build │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+Purging /var/lib/schroot/mount/sid-mipsel-sbuild-2714e5a6-fcfe-40d5-9114-951eeb2038f1/build/buildd-r-bioc-biobase_2.14.0-1-mipsel-e8fesc
+Not cleaning session: cloned chroot in use
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Summary │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+Architecture: mipsel
+Build-Space: 9144
+Build-Time: 158
+Distribution: sid
+Install-Time: 246
+Job: r-bioc-biobase_2.14.0-1
+Package: r-bioc-biobase
+Package-Time: 520
+Source-Version: 2.14.0-1
+Space: 9144
+Status: successful
+Version: 2.14.0-1
────────────────────────────────────────────────────────────────────────────────
-Finished at 20110804-0032
-Build needed 00:08:31, 10096k disc space
+Finished at 20111102-0728
+Build needed 00:08:40, 9144k disc space
+Signature with key 'F6EC30D8' requested:
diff --git a/mipsel.log b/mipsel.log
index 5033dd1..d5e79a5 100644
--- a/mipsel.log
+++ b/mipsel.log
@@ -1,64 +1,68 @@
-From buildd at phrixos.ayous.org Thu Aug 04 00:32:24 2011
-Return-path: <buildd at phrixos.ayous.org>
-Received: from phrixos.ayous.org ([2001:a60:f006:deb:223:9eff:fe00:f7c]
- helo=alius.ayous.org)
+From buildd at eysler.debian.org Wed Nov 02 07:28:56 2011
+Return-path: <buildd at eysler.debian.org>
+Received: from kokkonen.debian.org ([2001:41b8:202:deb:1a1a:0:52c3:4b61])
+ from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
+ CN=kokkonen.debian.org,
+ EMAIL=hostmaster at kokkonen.debian.org (verified)
by grieg.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
- (Exim 4.72) (envelope-from <buildd at phrixos.ayous.org>)
- id 1QolrJ-00057F-2N
- for logs at buildd.debian.org; Thu, 04 Aug 2011 00:32:24 +0000
-Received: from buildd by phrixos.ayous.org with local (Exim 4.72)
- (envelope-from <buildd at phrixos.ayous.org>)
- id 1QolrF-0007Mg-Ku; Thu, 04 Aug 2011 00:32:17 +0000
-Date: Thu, 04 Aug 2011 00:32:17 +0000
-Message-Id: <E1QolrF-0007Mg-Ku at phrixos.ayous.org>
-From: buildd on phrixos <buildd at phrixos.ayous.org>
-To: aba+buildd_phrixos at not.so.argh.org,logs at buildd.debian.org
-Subject: Log for successful build of r-bioc-biobase_2.12.2-1 on mipsel
+ (Exim 4.72) (envelope-from <buildd at eysler.debian.org>)
+ id 1RLVFo-0004rV-2O
+ for logs at buildd.debian.org; Wed, 02 Nov 2011 07:28:56 +0000
+Received: from eysler.debian.org ([2001:858:2:2:1a1a:0:563b:7698])
+ from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
+ CN=eysler.debian.org, EMAIL=hostmaster at eysler.debian.org (verified)
+ by kokkonen.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
+ (Exim 4.72) (envelope-from <buildd at eysler.debian.org>)
+ id 1RLVFn-0000Wg-2m
+ for logs at buildd.debian.org; Wed, 02 Nov 2011 07:28:55 +0000
+Received: from buildd by eysler.debian.org with local (Exim 4.72)
+ (envelope-from <buildd at eysler.debian.org>) id 1RLVFs-0007O4-6i
+ for logs at buildd.debian.org; Wed, 02 Nov 2011 07:29:00 +0000
+Date: Wed, 02 Nov 2011 07:29:00 +0000
+Message-Id: <E1RLVFs-0007O4-6i at eysler.debian.org>
+From: buildd on eysler <buildd at eysler.debian.org>
+To: logs at buildd.debian.org
+Subject: Log for successful build of r-bioc-biobase_2.14.0-1 on mipsel
(dist=sid)
Content-Type: text/plain; charset=UTF-8
Content-Transfer-Encoding: 8bit
Delivered-To: logs at buildd.debian.org
-sbuild (Debian sbuild) 0.60.0 (23 Feb 2010) on phrixos.ayous.org
+sbuild (Debian sbuild) 0.61.0 (23 Feb 2011) on eysler.debian.org
╔══════════════════════════════════════════════════════════════════════════════╗
-║ r-bioc-biobase 2.12.2-1 (mipsel) 04 Aug 2011 00:23 ║
+║ r-bioc-biobase 2.14.0-1 (mipsel) 02 Nov 2011 07:20 ║
╚══════════════════════════════════════════════════════════════════════════════╝
Package: r-bioc-biobase
-Version: 2.12.2-1
+Version: 2.14.0-1
+Source Version: 2.14.0-1
Architecture: mipsel
-Chroot Build Dir: /var/lib/schroot/mount/sid-mipsel-sbuild-4967957a-d166-4db3-bea7-f133e9169010/build/buildd-r-bioc-biobase_2.12.2-1-mipsel-VAOhJw
-Start Time: 20110804-0023
-Ign http://incoming.debian.org unstable InRelease
+Get:1 http://ftp.at.debian.org unstable InRelease [146 kB]
+Get:2 http://incoming.debian.org unstable InRelease [146 kB]
+Get:3 http://ftp.at.debian.org unstable/main Sources [5884 kB]
Ign http://incoming.debian.org InRelease
-Ign http://mirror.ayous.org unstable InRelease
-Get:1 http://incoming.debian.org unstable Release.gpg [836 B]
-Get:2 http://mirror.ayous.org unstable Release.gpg [836 B]
-Get:3 http://mirror.ayous.org unstable Release [145 kB]
Get:4 http://incoming.debian.org Release.gpg [836 B]
-Get:5 http://incoming.debian.org unstable Release [145 kB]
-Ign http://mirror.ayous.org unstable/contrib TranslationIndex
-Get:6 http://mirror.ayous.org unstable/main TranslationIndex [2045 B]
-Get:7 http://mirror.ayous.org unstable/main Sources [6812 kB]
-Get:8 http://incoming.debian.org Release [1604 B]
+Get:5 http://incoming.debian.org Release [1604 B]
+Get:6 http://incoming.debian.org unstable/main Sources [5884 kB]
+Get:7 http://ftp.at.debian.org unstable/contrib Sources [56.9 kB]
+Get:8 http://ftp.at.debian.org unstable/non-free Sources [104 kB]
+Get:9 http://ftp.at.debian.org unstable/main mipsel Packages [7609 kB]
+Get:10 http://ftp.at.debian.org unstable/contrib mipsel Packages [56.1 kB]
+Ign http://ftp.at.debian.org unstable/contrib TranslationIndex
+Get:11 http://ftp.at.debian.org unstable/main TranslationIndex [2045 B]
+Ign http://ftp.at.debian.org unstable/contrib Translation-en
+Get:12 http://incoming.debian.org unstable/contrib Sources [56.9 kB]
+Get:13 http://incoming.debian.org unstable/non-free Sources [104 kB]
+Get:14 http://incoming.debian.org unstable/main mipsel Packages [7609 kB]
+Get:15 http://incoming.debian.org unstable/contrib mipsel Packages [56.1 kB]
Ign http://incoming.debian.org unstable/contrib TranslationIndex
-Get:9 http://incoming.debian.org unstable/main TranslationIndex [2045 B]
-Get:10 http://incoming.debian.org unstable/main Sources [6812 kB]
-Get:11 http://mirror.ayous.org unstable/contrib Sources [60.4 kB]
-Get:12 http://mirror.ayous.org unstable/non-free Sources [115 kB]
-Get:13 http://incoming.debian.org unstable/contrib Sources [60.4 kB]
-Get:14 http://incoming.debian.org unstable/non-free Sources [115 kB]
-Get:15 http://mirror.ayous.org unstable/main mipsel Packages [9675 kB]
-Get:16 http://incoming.debian.org unstable/main mipsel Packages [9675 kB]
-Get:17 http://incoming.debian.org unstable/contrib mipsel Packages [65.3 kB]
-Get:18 http://incoming.debian.org Sources [35.4 kB]
-Get:19 http://incoming.debian.org Packages [370 kB]
+Get:16 http://incoming.debian.org unstable/main TranslationIndex [2045 B]
+Get:17 http://incoming.debian.org Sources [51.8 kB]
+Get:18 http://incoming.debian.org Packages [356 kB]
Ign http://incoming.debian.org Translation-en
Ign http://incoming.debian.org unstable/contrib Translation-en
-Get:20 http://mirror.ayous.org unstable/contrib mipsel Packages [65.3 kB]
-Ign http://mirror.ayous.org unstable/contrib Translation-en
-Fetched 34.2 MB in 34s (1004 kB/s)
+Fetched 28.1 MB in 1min 14s (377 kB/s)
Reading package lists...
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -79,60 +83,106 @@ Building dependency tree...
Reading state information...
NOTICE: 'r-bioc-biobase' packaging is maintained in the 'Git' version control system at:
git://git.debian.org/git/debian-med/r-bioc-biobase.git
-Need to get 2229 kB of source archives.
-Get:1 http://incoming.debian.org/buildd-unstable/ r-bioc-biobase 2.12.2-1 (dsc) [1944 B]
-Get:2 http://incoming.debian.org/buildd-unstable/ r-bioc-biobase 2.12.2-1 (tar) [2222 kB]
-Get:3 http://incoming.debian.org/buildd-unstable/ r-bioc-biobase 2.12.2-1 (diff) [5417 B]
-Fetched 2229 kB in 6s (349 kB/s)
+Need to get 1934 kB of source archives.
+Get:1 http://incoming.debian.org/buildd-unstable/ r-bioc-biobase 2.14.0-1 (dsc) [2004 B]
+Get:2 http://incoming.debian.org/buildd-unstable/ r-bioc-biobase 2.14.0-1 (tar) [1926 kB]
+Get:3 http://incoming.debian.org/buildd-unstable/ r-bioc-biobase 2.14.0-1 (diff) [5645 B]
+Fetched 1934 kB in 1s (1098 kB/s)
Download complete and in download only mode
Check arch
──────────
-** Using build dependencies supplied by package:
-Build-Depends: cdbs, debhelper (>= 8), r-base-dev
┌──────────────────────────────────────────────────────────────────────────────┐
-│ Install build dependencies (internal resolver) │
+│ Install core build dependencies (internal resolver) │
└──────────────────────────────────────────────────────────────────────────────┘
-Checking for already installed source dependencies...
+Build-Depends: build-essential, fakeroot
+Checking for already installed dependencies...
+build-essential: already installed (11.5)
+fakeroot: already installed (1.18.1-1)
+Checking for dependency conflicts...
+Installing positive dependencies:
+Reading package lists...
+Building dependency tree...
+Reading state information...
+0 upgraded, 0 newly installed, 0 to remove and 24 not upgraded.
+Removing negative dependencies:
+Reading package lists...
+Building dependency tree...
+Reading state information...
+0 upgraded, 0 newly installed, 0 to remove and 24 not upgraded.
+Checking correctness of dependencies...
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Install r-bioc-biobase build dependencies (internal resolver) │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+Build-Depends: base-files, base-passwd, bash, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, ncurses-base, ncurses-bin, perl-base, sed, login, sysvinit-utils, sysvinit, tar, bsdutils, mount, util-linux, libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), cdbs, debhelper (>= 8), r-base-dev (>= 2.10)
+Checking for already installed dependencies...
+base-files: already installed (6.5)
+base-passwd: already installed (3.5.23)
+bash: already installed (4.1-3)
+coreutils: already installed (8.13-3)
+dash: already installed (0.5.7-2)
+debianutils: already installed (4.0.4)
+diffutils: already installed (1:3.0-1)
+dpkg: already installed (1.16.1.1)
+e2fsprogs: already installed (1.42~WIP-2011-10-09-1)
+findutils: already installed (4.4.2-1+b1)
+grep: already installed (2.9-2)
+gzip: already installed (1.4-1)
+hostname: already installed (3.06)
+ncurses-base: already installed (5.9-2)
+ncurses-bin: already installed (5.9-2)
+perl-base: already installed (5.12.4-6)
+sed: already installed (4.2.1-9)
+login: already installed (1:4.1.4.2+svn3283-3)
+sysvinit-utils: already installed (2.88dsf-13.12)
+sysvinit: already installed (2.88dsf-13.12)
+tar: already installed (1.26-2)
+bsdutils: already installed (1:2.19.1-5)
+mount: already installed (2.19.1-5)
+util-linux: already installed (2.19.1-5)
+libc6-dev: already installed (2.13-21)
+gcc: already installed (4:4.6.1-3 >= 4:4.4.3 is satisfied)
+g++: already installed (4:4.6.1-3 >= 4:4.4.3 is satisfied)
+make: already installed (3.81-8.1)
+dpkg-dev: already installed (1.16.1.1 >= 1.13.5 is satisfied)
cdbs: missing
debhelper: missing
-Using default version 8.9.3
+Using default version 8.9.8
r-base-dev: missing
-Checking for source dependency conflicts...
+Using default version 2.14.0-1
+Checking for dependency conflicts...
Installing positive dependencies: cdbs debhelper r-base-dev
Reading package lists...
Building dependency tree...
Reading state information...
The following extra packages will be installed:
- bsdmainutils cpp cpp-4.4 cpp-4.6 dpatch file fontconfig fontconfig-config
- g++-4.4 g++-4.6 gcc gcc-4.4 gcc-4.4-base gcc-4.6 gcc-4.6-base gettext
- gettext-base gfortran gfortran-4.6 groff-base html2text intltool-debian
- libblas-dev libblas3gf libbz2-dev libcairo2 libcroco3 libdatrie1 libexpat1
- libfontconfig1 libfreetype6 libgcc1 libgfortran3 libglib2.0-0 libgomp1
- libice6 libjpeg62 libjpeg8 libjpeg8-dev liblapack-dev liblapack3gf libmagic1
- libncurses5-dev libpango1.0-0 libpaper-utils libpaper1 libpcre3 libpcre3-dev
- libpcrecpp0 libpipeline1 libpixman-1-0 libpng12-0 libpng12-dev
- libreadline-dev libreadline6-dev libsm6 libstdc++6 libstdc++6-4.4-dev
- libstdc++6-4.6-dev libthai-data libthai0 libtiff4 libunistring0 libx11-6
- libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6
- libxft2 libxml2 libxrender1 libxss1 libxt6 man-db po-debconf r-base-core
- tcl8.5 tk8.5 ttf-dejavu-core ucf unzip x11-common xdg-utils zip zlib1g-dev
+ bsdmainutils cpp-4.6 dpatch file fontconfig fontconfig-config g++-4.6
+ gcc-4.6 gcc-4.6-base gettext gettext-base gfortran gfortran-4.6 groff-base
+ html2text intltool-debian libblas-dev libblas3gf libbz2-dev libcairo2
+ libcroco3 libdatrie1 libexpat1 libfontconfig1 libfreetype6 libgcc1
+ libgfortran3 libglib2.0-0 libgomp1 libice6 libjpeg8 libjpeg8-dev
+ liblapack-dev liblapack3gf liblzma5 libmagic1 libncurses5-dev libpango1.0-0
+ libpaper-utils libpaper1 libpcre3 libpcre3-dev libpcrecpp0 libpipeline1
+ libpixman-1-0 libpng12-0 libpng12-dev libreadline-dev libreadline6-dev
+ libsm6 libstdc++6 libstdc++6-4.6-dev libthai-data libthai0 libtiff4
+ libtinfo-dev libunistring0 libx11-6 libx11-data libxau6 libxcb-render0
+ libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxrender1 libxss1
+ libxt6 man-db po-debconf r-base-core tcl8.5 tk8.5 ttf-dejavu-core ucf unzip
+ x11-common xdg-utils zip zlib1g-dev
Suggested packages:
- wamerican wordlist whois vacation devscripts cpp-doc gcc-4.4-locales
- gcc-4.6-locales dh-make curl defoma g++-4.4-multilib gcc-4.4-doc
- libstdc++6-4.4-dbg g++-4.6-multilib gcc-4.6-doc libstdc++6-4.6-dbg
- gcc-multilib manpages-dev autoconf automake1.9 libtool flex bison gdb
- gcc-doc gcc-4.4-multilib libmudflap0-4.4-dev libgcc1-dbg libgomp1-dbg
- libmudflap0-dbg libppl-c2 libppl7 gcc-4.6-multilib libmudflap0-4.6-dev
- libquadmath-dbg gettext-doc gfortran-multilib gfortran-doc
- gfortran-4.6-multilib gfortran-4.6-doc libgfortran3-dbg groff ncurses-doc
- ttf-baekmuk ttf-arphic-gbsn00lp ttf-arphic-bsmi00lp ttf-arphic-gkai00mp
- ttf-arphic-bkai00mp libstdc++6-4.4-doc libstdc++6-4.6-doc less www-browser
- libmail-box-perl r-doc-info r-doc-pdf r-mathlib r-base-html tclreadline
- gvfs-bin
+ wamerican wordlist whois vacation devscripts gcc-4.6-locales dh-make curl
+ defoma g++-4.6-multilib gcc-4.6-doc libstdc++6-4.6-dbg gcc-4.6-multilib
+ libmudflap0-4.6-dev libgcc1-dbg libgomp1-dbg libquadmath-dbg libmudflap0-dbg
+ gettext-doc gfortran-multilib gfortran-doc gfortran-4.6-multilib
+ gfortran-4.6-doc libgfortran3-dbg groff ncurses-doc ttf-baekmuk
+ ttf-arphic-gbsn00lp ttf-arphic-bsmi00lp ttf-arphic-gkai00mp
+ ttf-arphic-bkai00mp libstdc++6-4.6-doc less www-browser libmail-box-perl
+ r-doc-info r-doc-pdf r-mathlib r-base-html tclreadline gvfs-bin
Recommended packages:
autotools-dev patchutils autopoint libglib2.0-data shared-mime-info
x-ttcidfont-conf xml-core libmail-sendmail-perl r-recommended r-doc-html
@@ -141,348 +191,333 @@ The following NEW packages will be installed:
bsdmainutils cdbs debhelper dpatch file fontconfig fontconfig-config gettext
gettext-base gfortran gfortran-4.6 groff-base html2text intltool-debian
libblas-dev libblas3gf libbz2-dev libcairo2 libcroco3 libdatrie1 libexpat1
- libfontconfig1 libfreetype6 libgfortran3 libglib2.0-0 libice6 libjpeg62
- libjpeg8 libjpeg8-dev liblapack-dev liblapack3gf libmagic1 libncurses5-dev
+ libfontconfig1 libfreetype6 libgfortran3 libglib2.0-0 libice6 libjpeg8
+ libjpeg8-dev liblapack-dev liblapack3gf liblzma5 libmagic1 libncurses5-dev
libpango1.0-0 libpaper-utils libpaper1 libpcre3 libpcre3-dev libpcrecpp0
libpipeline1 libpixman-1-0 libpng12-0 libpng12-dev libreadline-dev
- libreadline6-dev libsm6 libthai-data libthai0 libtiff4 libunistring0
- libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6
- libxext6 libxft2 libxml2 libxrender1 libxss1 libxt6 man-db po-debconf
- r-base-core r-base-dev tcl8.5 tk8.5 ttf-dejavu-core ucf unzip x11-common
- xdg-utils zip zlib1g-dev
+ libreadline6-dev libsm6 libthai-data libthai0 libtiff4 libtinfo-dev
+ libunistring0 libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0
+ libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxrender1 libxss1 libxt6 man-db
+ po-debconf r-base-core r-base-dev tcl8.5 tk8.5 ttf-dejavu-core ucf unzip
+ x11-common xdg-utils zip zlib1g-dev
The following packages will be upgraded:
- cpp cpp-4.4 cpp-4.6 g++-4.4 g++-4.6 gcc gcc-4.4 gcc-4.4-base gcc-4.6
- gcc-4.6-base libgcc1 libgomp1 libstdc++6 libstdc++6-4.4-dev
+ cpp-4.6 g++-4.6 gcc-4.6 gcc-4.6-base libgcc1 libgomp1 libstdc++6
libstdc++6-4.6-dev
-15 upgraded, 76 newly installed, 0 to remove and 46 not upgraded.
-Need to get 78.2 MB of archives.
-After this operation, 129 MB of additional disk space will be used.
-Get:1 http://mirror.ayous.org/debian/ unstable/main libgomp1 mipsel 4.6.1-5 [26.2 kB]
-Get:2 http://mirror.ayous.org/debian/ unstable/main g++-4.4 mipsel 4.4.6-7 [4991 kB]
-Get:3 http://mirror.ayous.org/debian/ unstable/main libstdc++6-4.4-dev mipsel 4.4.6-7 [1559 kB]
-Get:4 http://mirror.ayous.org/debian/ unstable/main cpp-4.4 mipsel 4.4.6-7 [3400 kB]
-Get:5 http://mirror.ayous.org/debian/ unstable/main gcc-4.4-base mipsel 4.4.6-7 [125 kB]
-Get:6 http://mirror.ayous.org/debian/ unstable/main gcc-4.4 mipsel 4.4.6-7 [612 kB]
-Get:7 http://mirror.ayous.org/debian/ unstable/main gcc-4.6-base mipsel 4.6.1-5 [134 kB]
-Get:8 http://mirror.ayous.org/debian/ unstable/main libgcc1 mipsel 1:4.6.1-5 [68.4 kB]
-Get:9 http://mirror.ayous.org/debian/ unstable/main cpp-4.6 mipsel 4.6.1-5 [3752 kB]
-Get:10 http://mirror.ayous.org/debian/ unstable/main libstdc++6-4.6-dev mipsel 4.6.1-5 [1704 kB]
-Get:11 http://mirror.ayous.org/debian/ unstable/main g++-4.6 mipsel 4.6.1-5 [6150 kB]
-Get:12 http://mirror.ayous.org/debian/ unstable/main gcc-4.6 mipsel 4.6.1-5 [4065 kB]
-Get:13 http://mirror.ayous.org/debian/ unstable/main libstdc++6 mipsel 4.6.1-5 [301 kB]
-Get:14 http://mirror.ayous.org/debian/ unstable/main libpipeline1 mipsel 1.2.0-3 [35.7 kB]
-Get:15 http://mirror.ayous.org/debian/ unstable/main libdatrie1 mipsel 0.2.4-3 [27.1 kB]
-Get:16 http://mirror.ayous.org/debian/ unstable/main libexpat1 mipsel 2.0.1-7 [134 kB]
-Get:17 http://mirror.ayous.org/debian/ unstable/main libfreetype6 mipsel 2.4.4-2 [397 kB]
-Get:18 http://mirror.ayous.org/debian/ unstable/main ucf all 3.0025+nmu2 [70.6 kB]
-Get:19 http://mirror.ayous.org/debian/ unstable/main ttf-dejavu-core all 2.33-1 [1550 kB]
-Get:20 http://mirror.ayous.org/debian/ unstable/main fontconfig-config all 2.8.0-3 [221 kB]
-Get:21 http://mirror.ayous.org/debian/ unstable/main libfontconfig1 mipsel 2.8.0-3 [285 kB]
-Get:22 http://mirror.ayous.org/debian/ unstable/main libgfortran3 mipsel 4.6.1-5 [230 kB]
-Get:23 http://mirror.ayous.org/debian/ unstable/main x11-common all 1:7.6+7 [275 kB]
-Get:24 http://mirror.ayous.org/debian/ unstable/main libice6 mipsel 2:1.0.7-2 [49.9 kB]
-Get:25 http://mirror.ayous.org/debian/ unstable/main libpixman-1-0 mipsel 0.22.2-1 [338 kB]
-Get:26 http://mirror.ayous.org/debian/ unstable/main libpng12-0 mipsel 1.2.46-3 [184 kB]
-Get:27 http://mirror.ayous.org/debian/ unstable/main libxau6 mipsel 1:1.0.6-3 [16.6 kB]
-Get:28 http://mirror.ayous.org/debian/ unstable/main libxdmcp6 mipsel 1:1.1.0-3 [22.2 kB]
-Get:29 http://mirror.ayous.org/debian/ unstable/main libxcb1 mipsel 1.7-3 [37.7 kB]
-Get:30 http://mirror.ayous.org/debian/ unstable/main libx11-data all 2:1.4.4-1 [183 kB]
-Get:31 http://mirror.ayous.org/debian/ unstable/main libx11-6 mipsel 2:1.4.4-1 [858 kB]
-Get:32 http://mirror.ayous.org/debian/ unstable/main libxcb-render0 mipsel 1.7-3 [14.5 kB]
-Get:33 http://mirror.ayous.org/debian/ unstable/main libxcb-shm0 mipsel 1.7-3 [9366 B]
-Get:34 http://mirror.ayous.org/debian/ unstable/main libxrender1 mipsel 1:0.9.6-2 [30.2 kB]
-Get:35 http://mirror.ayous.org/debian/ unstable/main libcairo2 mipsel 1.10.2-6.1 [954 kB]
-Get:36 http://mirror.ayous.org/debian/ unstable/main libpcre3 mipsel 8.12-3 [262 kB]
-Get:37 http://mirror.ayous.org/debian/ unstable/main libglib2.0-0 mipsel 2.28.6-1 [1503 kB]
-Get:38 http://mirror.ayous.org/debian/ unstable/main libthai-data all 0.1.15-2 [201 kB]
-Get:39 http://mirror.ayous.org/debian/ unstable/main libthai0 mipsel 0.1.15-2 [41.6 kB]
-Get:40 http://mirror.ayous.org/debian/ unstable/main libxft2 mipsel 2.2.0-3 [56.8 kB]
-Get:41 http://mirror.ayous.org/debian/ unstable/main fontconfig mipsel 2.8.0-3 [334 kB]
-Get:42 http://mirror.ayous.org/debian/ unstable/main libpango1.0-0 mipsel 1.28.4-2 [418 kB]
-Get:43 http://mirror.ayous.org/debian/ unstable/main libsm6 mipsel 2:1.2.0-2 [28.1 kB]
-Get:44 http://mirror.ayous.org/debian/ unstable/main libxext6 mipsel 2:1.3.0-3 [48.8 kB]
-Get:45 http://mirror.ayous.org/debian/ unstable/main libxt6 mipsel 1:1.1.1-2 [189 kB]
-Get:46 http://mirror.ayous.org/debian/ unstable/main bsdmainutils mipsel 8.2.3 [208 kB]
-Get:47 http://mirror.ayous.org/debian/ unstable/main groff-base mipsel 1.21-6 [1142 kB]
-Get:48 http://mirror.ayous.org/debian/ unstable/main man-db mipsel 2.6.0.2-2 [986 kB]
-Get:49 http://mirror.ayous.org/debian/ unstable/main libmagic1 mipsel 5.04-5+b1 [238 kB]
-Get:50 http://mirror.ayous.org/debian/ unstable/main file mipsel 5.04-5+b1 [49.9 kB]
-Get:51 http://mirror.ayous.org/debian/ unstable/main gettext-base mipsel 0.18.1.1-3 [152 kB]
-Get:52 http://mirror.ayous.org/debian/ unstable/main libxml2 mipsel 2.7.8.dfsg-4 [858 kB]
-Get:53 http://mirror.ayous.org/debian/ unstable/main html2text mipsel 1.3.2a-15 [103 kB]
-Get:54 http://mirror.ayous.org/debian/ unstable/main libcroco3 mipsel 0.6.2-1 [110 kB]
-Get:55 http://mirror.ayous.org/debian/ unstable/main libunistring0 mipsel 0.9.3-4 [411 kB]
-Get:56 http://mirror.ayous.org/debian/ unstable/main gettext mipsel 0.18.1.1-3 [2023 kB]
-Get:57 http://mirror.ayous.org/debian/ unstable/main intltool-debian all 0.35.0+20060710.1 [30.8 kB]
-Get:58 http://mirror.ayous.org/debian/ unstable/main po-debconf all 1.0.16+nmu1 [223 kB]
-Get:59 http://mirror.ayous.org/debian/ unstable/main debhelper all 8.9.3 [561 kB]
-Get:60 http://mirror.ayous.org/debian/ unstable/main cdbs all 0.4.96 [75.8 kB]
-Get:61 http://mirror.ayous.org/debian/ unstable/main cpp mipsel 4:4.6.1-2 [15.9 kB]
-Get:62 http://mirror.ayous.org/debian/ unstable/main dpatch all 2.0.31 [92.3 kB]
-Get:63 http://mirror.ayous.org/debian/ unstable/main gcc mipsel 4:4.6.1-2 [5026 B]
-Get:64 http://mirror.ayous.org/debian/ unstable/main gfortran-4.6 mipsel 4.6.1-5 [4381 kB]
-Get:65 http://mirror.ayous.org/debian/ unstable/main gfortran mipsel 4:4.6.1-2 [1130 B]
-Get:66 http://mirror.ayous.org/debian/ unstable/main libblas3gf mipsel 1.2-8 [210 kB]
-Get:67 http://mirror.ayous.org/debian/ unstable/main libblas-dev mipsel 1.2-8 [256 kB]
-Get:68 http://mirror.ayous.org/debian/ unstable/main libbz2-dev mipsel 1.0.5-6 [38.1 kB]
-Get:69 http://mirror.ayous.org/debian/ unstable/main libjpeg62 mipsel 6b1-2 [93.7 kB]
-Get:70 http://mirror.ayous.org/debian/ unstable/main libjpeg8 mipsel 8c-2 [145 kB]
-Get:71 http://mirror.ayous.org/debian/ unstable/main libjpeg8-dev mipsel 8c-2 [256 kB]
-Get:72 http://mirror.ayous.org/debian/ unstable/main liblapack3gf mipsel 3.3.0-4 [4572 kB]
-Get:73 http://mirror.ayous.org/debian/ unstable/main liblapack-dev mipsel 3.3.0-4 [5190 kB]
-Get:74 http://mirror.ayous.org/debian/ unstable/main libncurses5-dev mipsel 5.9-1 [506 kB]
-Get:75 http://mirror.ayous.org/debian/ unstable/main libpaper1 mipsel 1.1.24+nmu1 [21.2 kB]
-Get:76 http://mirror.ayous.org/debian/ unstable/main libpaper-utils mipsel 1.1.24+nmu1 [18.2 kB]
-Get:77 http://mirror.ayous.org/debian/ unstable/main libpcrecpp0 mipsel 8.12-3 [113 kB]
-Get:78 http://mirror.ayous.org/debian/ unstable/main libpcre3-dev mipsel 8.12-3 [315 kB]
-Get:79 http://mirror.ayous.org/debian/ unstable/main zlib1g-dev mipsel 1:1.2.3.4.dfsg-3 [192 kB]
-Get:80 http://mirror.ayous.org/debian/ unstable/main libpng12-dev mipsel 1.2.46-3 [275 kB]
-Get:81 http://mirror.ayous.org/debian/ unstable/main libreadline6-dev mipsel 6.2-2 [270 kB]
-Get:82 http://mirror.ayous.org/debian/ unstable/main libreadline-dev mipsel 6.2-2 [882 B]
-Get:83 http://mirror.ayous.org/debian/ unstable/main libtiff4 mipsel 3.9.5-1 [191 kB]
-Get:84 http://mirror.ayous.org/debian/ unstable/main libxss1 mipsel 1:1.2.1-1 [16.4 kB]
-Get:85 http://mirror.ayous.org/debian/ unstable/main zip mipsel 3.0-4 [334 kB]
-Get:86 http://mirror.ayous.org/debian/ unstable/main unzip mipsel 6.0-5 [189 kB]
-Get:87 http://mirror.ayous.org/debian/ unstable/main xdg-utils all 1.1.0~rc1-2 [70.2 kB]
-Get:88 http://mirror.ayous.org/debian/ unstable/main tcl8.5 mipsel 8.5.10-1 [1604 kB]
-Get:89 http://mirror.ayous.org/debian/ unstable/main tk8.5 mipsel 8.5.10-1 [1162 kB]
-Get:90 http://mirror.ayous.org/debian/ unstable/main r-base-core mipsel 2.13.1-1 [14.6 MB]
-Get:91 http://mirror.ayous.org/debian/ unstable/main r-base-dev all 2.13.1-1 [3490 B]
+8 upgraded, 77 newly installed, 0 to remove and 16 not upgraded.
+Need to get 71.0 MB of archives.
+After this operation, 123 MB of additional disk space will be used.
+Get:1 http://ftp.at.debian.org/debian/ unstable/main libgomp1 mipsel 4.6.2-2 [26.2 kB]
+Get:2 http://ftp.at.debian.org/debian/ unstable/main gcc-4.6-base mipsel 4.6.2-2 [136 kB]
+Get:3 http://ftp.at.debian.org/debian/ unstable/main libgcc1 mipsel 1:4.6.2-2 [68.3 kB]
+Get:4 http://ftp.at.debian.org/debian/ unstable/main cpp-4.6 mipsel 4.6.2-2 [3779 kB]
+Get:5 http://ftp.at.debian.org/debian/ unstable/main libstdc++6-4.6-dev mipsel 4.6.2-2 [1669 kB]
+Get:6 http://ftp.at.debian.org/debian/ unstable/main g++-4.6 mipsel 4.6.2-2 [6159 kB]
+Get:7 http://ftp.at.debian.org/debian/ unstable/main gcc-4.6 mipsel 4.6.2-2 [4038 kB]
+Get:8 http://ftp.at.debian.org/debian/ unstable/main libstdc++6 mipsel 4.6.2-2 [295 kB]
+Get:9 http://ftp.at.debian.org/debian/ unstable/main libpipeline1 mipsel 1.2.0-4 [35.2 kB]
+Get:10 http://ftp.at.debian.org/debian/ unstable/main liblzma5 mipsel 5.1.1alpha+20110809-3 [204 kB]
+Get:11 http://ftp.at.debian.org/debian/ unstable/main libpcre3 mipsel 8.12-4 [227 kB]
+Get:12 http://ftp.at.debian.org/debian/ unstable/main libglib2.0-0 mipsel 2.28.8-1 [1561 kB]
+Get:13 http://ftp.at.debian.org/debian/ unstable/main libxml2 mipsel 2.7.8.dfsg-5 [858 kB]
+Get:14 http://ftp.at.debian.org/debian/ unstable/main libcroco3 mipsel 0.6.2-2 [103 kB]
+Get:15 http://ftp.at.debian.org/debian/ unstable/main libdatrie1 mipsel 0.2.4-3 [27.1 kB]
+Get:16 http://ftp.at.debian.org/debian/ unstable/main libexpat1 mipsel 2.0.1-7.1 [141 kB]
+Get:17 http://ftp.at.debian.org/debian/ unstable/main libfreetype6 mipsel 2.4.7-2 [422 kB]
+Get:18 http://ftp.at.debian.org/debian/ unstable/main ucf all 3.0025+nmu2 [70.6 kB]
+Get:19 http://ftp.at.debian.org/debian/ unstable/main ttf-dejavu-core all 2.33-2 [1552 kB]
+Get:20 http://ftp.at.debian.org/debian/ unstable/main fontconfig-config all 2.8.0-3 [221 kB]
+Get:21 http://ftp.at.debian.org/debian/ unstable/main libfontconfig1 mipsel 2.8.0-3 [285 kB]
+Get:22 http://ftp.at.debian.org/debian/ unstable/main libgfortran3 mipsel 4.6.2-2 [230 kB]
+Get:23 http://ftp.at.debian.org/debian/ unstable/main x11-common all 1:7.6+9 [276 kB]
+Get:24 http://ftp.at.debian.org/debian/ unstable/main libice6 mipsel 2:1.0.7-2 [49.9 kB]
+Get:25 http://ftp.at.debian.org/debian/ unstable/main libpixman-1-0 mipsel 0.23.8-1 [363 kB]
+Get:26 http://ftp.at.debian.org/debian/ unstable/main libpng12-0 mipsel 1.2.46-3 [184 kB]
+Get:27 http://ftp.at.debian.org/debian/ unstable/main libxau6 mipsel 1:1.0.6-3 [16.6 kB]
+Get:28 http://ftp.at.debian.org/debian/ unstable/main libxdmcp6 mipsel 1:1.1.0-3 [22.2 kB]
+Get:29 http://ftp.at.debian.org/debian/ unstable/main libxcb1 mipsel 1.7-3 [37.7 kB]
+Get:30 http://ftp.at.debian.org/debian/ unstable/main libx11-data all 2:1.4.4-2 [183 kB]
+Get:31 http://ftp.at.debian.org/debian/ unstable/main libx11-6 mipsel 2:1.4.4-2 [858 kB]
+Get:32 http://ftp.at.debian.org/debian/ unstable/main libxcb-render0 mipsel 1.7-3 [14.5 kB]
+Get:33 http://ftp.at.debian.org/debian/ unstable/main libxcb-shm0 mipsel 1.7-3 [9366 B]
+Get:34 http://ftp.at.debian.org/debian/ unstable/main libxrender1 mipsel 1:0.9.6-2 [30.2 kB]
+Get:35 http://ftp.at.debian.org/debian/ unstable/main libcairo2 mipsel 1.10.2-6.1 [954 kB]
+Get:36 http://ftp.at.debian.org/debian/ unstable/main libthai-data all 0.1.15-2 [201 kB]
+Get:37 http://ftp.at.debian.org/debian/ unstable/main libthai0 mipsel 0.1.15-2 [41.6 kB]
+Get:38 http://ftp.at.debian.org/debian/ unstable/main libxft2 mipsel 2.2.0-3 [56.8 kB]
+Get:39 http://ftp.at.debian.org/debian/ unstable/main fontconfig mipsel 2.8.0-3 [334 kB]
+Get:40 http://ftp.at.debian.org/debian/ unstable/main libpango1.0-0 mipsel 1.29.4-2 [434 kB]
+Get:41 http://ftp.at.debian.org/debian/ unstable/main libpcrecpp0 mipsel 8.12-4 [112 kB]
+Get:42 http://ftp.at.debian.org/debian/ unstable/main libsm6 mipsel 2:1.2.0-2 [28.1 kB]
+Get:43 http://ftp.at.debian.org/debian/ unstable/main libjpeg8 mipsel 8c-2 [145 kB]
+Get:44 http://ftp.at.debian.org/debian/ unstable/main libtiff4 mipsel 3.9.5-2 [191 kB]
+Get:45 http://ftp.at.debian.org/debian/ unstable/main libunistring0 mipsel 0.9.3-5 [407 kB]
+Get:46 http://ftp.at.debian.org/debian/ unstable/main libxext6 mipsel 2:1.3.0-3 [48.8 kB]
+Get:47 http://ftp.at.debian.org/debian/ unstable/main libxss1 mipsel 1:1.2.1-2 [16.5 kB]
+Get:48 http://ftp.at.debian.org/debian/ unstable/main libxt6 mipsel 1:1.1.1-2 [189 kB]
+Get:49 http://ftp.at.debian.org/debian/ unstable/main bsdmainutils mipsel 8.2.3 [208 kB]
+Get:50 http://ftp.at.debian.org/debian/ unstable/main groff-base mipsel 1.21-6 [1142 kB]
+Get:51 http://ftp.at.debian.org/debian/ unstable/main man-db mipsel 2.6.0.2-2 [986 kB]
+Get:52 http://ftp.at.debian.org/debian/ unstable/main libmagic1 mipsel 5.09-2 [247 kB]
+Get:53 http://ftp.at.debian.org/debian/ unstable/main file mipsel 5.09-2 [52.0 kB]
+Get:54 http://ftp.at.debian.org/debian/ unstable/main gettext-base mipsel 0.18.1.1-5 [133 kB]
+Get:55 http://ftp.at.debian.org/debian/ unstable/main cdbs all 0.4.99 [77.1 kB]
+Get:56 http://ftp.at.debian.org/debian/ unstable/main html2text mipsel 1.3.2a-15 [103 kB]
+Get:57 http://ftp.at.debian.org/debian/ unstable/main gettext mipsel 0.18.1.1-5 [2008 kB]
+Get:58 http://ftp.at.debian.org/debian/ unstable/main intltool-debian all 0.35.0+20060710.1 [30.8 kB]
+Get:59 http://ftp.at.debian.org/debian/ unstable/main po-debconf all 1.0.16+nmu1 [223 kB]
+Get:60 http://ftp.at.debian.org/debian/ unstable/main debhelper all 8.9.8 [552 kB]
+Get:61 http://ftp.at.debian.org/debian/ unstable/main dpatch all 2.0.33 [95.9 kB]
+Get:62 http://ftp.at.debian.org/debian/ unstable/main gfortran-4.6 mipsel 4.6.2-2 [4379 kB]
+Get:63 http://ftp.at.debian.org/debian/ unstable/main gfortran mipsel 4:4.6.1-3 [1134 B]
+Get:64 http://ftp.at.debian.org/debian/ unstable/main libblas3gf mipsel 1.2.20110419-2 [203 kB]
+Get:65 http://ftp.at.debian.org/debian/ unstable/main libblas-dev mipsel 1.2.20110419-2 [244 kB]
+Get:66 http://ftp.at.debian.org/debian/ unstable/main libbz2-dev mipsel 1.0.5-7 [37.9 kB]
+Get:67 http://ftp.at.debian.org/debian/ unstable/main libjpeg8-dev mipsel 8c-2 [256 kB]
+Get:68 http://ftp.at.debian.org/debian/ unstable/main liblapack3gf mipsel 3.3.1-1 [4277 kB]
+Get:69 http://ftp.at.debian.org/debian/ unstable/main liblapack-dev mipsel 3.3.1-1 [4906 kB]
+Get:70 http://ftp.at.debian.org/debian/ unstable/main libtinfo-dev mipsel 5.9-2 [70.2 kB]
+Get:71 http://ftp.at.debian.org/debian/ unstable/main libncurses5-dev mipsel 5.9-2 [435 kB]
+Get:72 http://ftp.at.debian.org/debian/ unstable/main libpaper1 mipsel 1.1.24+nmu1 [21.2 kB]
+Get:73 http://ftp.at.debian.org/debian/ unstable/main libpaper-utils mipsel 1.1.24+nmu1 [18.2 kB]
+Get:74 http://ftp.at.debian.org/debian/ unstable/main libpcre3-dev mipsel 8.12-4 [316 kB]
+Get:75 http://ftp.at.debian.org/debian/ unstable/main zlib1g-dev mipsel 1:1.2.3.4.dfsg-3 [192 kB]
+Get:76 http://ftp.at.debian.org/debian/ unstable/main libpng12-dev mipsel 1.2.46-3 [275 kB]
+Get:77 http://ftp.at.debian.org/debian/ unstable/main libreadline6-dev mipsel 6.2-7 [270 kB]
+Get:78 http://ftp.at.debian.org/debian/ unstable/main libreadline-dev mipsel 6.2-7 [888 B]
+Get:79 http://ftp.at.debian.org/debian/ unstable/main zip mipsel 3.0-4 [334 kB]
+Get:80 http://ftp.at.debian.org/debian/ unstable/main unzip mipsel 6.0-5 [189 kB]
+Get:81 http://ftp.at.debian.org/debian/ unstable/main xdg-utils all 1.1.0~rc1-2 [70.2 kB]
+Get:82 http://ftp.at.debian.org/debian/ unstable/main tcl8.5 mipsel 8.5.10-1 [1604 kB]
+Get:83 http://ftp.at.debian.org/debian/ unstable/main tk8.5 mipsel 8.5.10-1 [1162 kB]
+Get:84 http://ftp.at.debian.org/debian/ unstable/main r-base-core mipsel 2.14.0-1 [18.6 MB]
+Get:85 http://ftp.at.debian.org/debian/ unstable/main r-base-dev all 2.14.0-1 [3488 B]
debconf: delaying package configuration, since apt-utils is not installed
-Fetched 78.2 MB in 14s (5520 kB/s)
-(Reading database ... 11454 files and directories currently installed.)
-Preparing to replace libgomp1 4.6.0-13 (using .../libgomp1_4.6.1-5_mipsel.deb) ...
+Fetched 71.0 MB in 15s (4486 kB/s)
+(Reading database ... 10699 files and directories currently installed.)
+Preparing to replace libgomp1 4.6.1-15 (using .../libgomp1_4.6.2-2_mipsel.deb) ...
Unpacking replacement libgomp1 ...
-Preparing to replace g++-4.4 4.4.6-3 (using .../g++-4.4_4.4.6-7_mipsel.deb) ...
-Unpacking replacement g++-4.4 ...
-Preparing to replace libstdc++6-4.4-dev 4.4.6-3 (using .../libstdc++6-4.4-dev_4.4.6-7_mipsel.deb) ...
-Unpacking replacement libstdc++6-4.4-dev ...
-Preparing to replace cpp-4.4 4.4.6-3 (using .../cpp-4.4_4.4.6-7_mipsel.deb) ...
-Unpacking replacement cpp-4.4 ...
-Preparing to replace gcc-4.4-base 4.4.6-3 (using .../gcc-4.4-base_4.4.6-7_mipsel.deb) ...
-Unpacking replacement gcc-4.4-base ...
-Preparing to replace gcc-4.4 4.4.6-3 (using .../gcc-4.4_4.4.6-7_mipsel.deb) ...
-Unpacking replacement gcc-4.4 ...
-Preparing to replace gcc-4.6-base 4.6.0-13 (using .../gcc-4.6-base_4.6.1-5_mipsel.deb) ...
+Preparing to replace gcc-4.6-base 4.6.1-15 (using .../gcc-4.6-base_4.6.2-2_mipsel.deb) ...
Unpacking replacement gcc-4.6-base ...
-Setting up gcc-4.6-base (4.6.1-5) ...
-(Reading database ... 11458 files and directories currently installed.)
-Preparing to replace libgcc1 1:4.6.0-13 (using .../libgcc1_1%3a4.6.1-5_mipsel.deb) ...
+Setting up gcc-4.6-base (4.6.2-2) ...
+(Reading database ... 10700 files and directories currently installed.)
+Preparing to replace libgcc1 1:4.6.1-15 (using .../libgcc1_1%3a4.6.2-2_mipsel.deb) ...
Unpacking replacement libgcc1 ...
-Setting up libgcc1 (1:4.6.1-5) ...
-(Reading database ... 11458 files and directories currently installed.)
-Preparing to replace cpp-4.6 4.6.0-13 (using .../cpp-4.6_4.6.1-5_mipsel.deb) ...
+Setting up libgcc1 (1:4.6.2-2) ...
+(Reading database ... 10700 files and directories currently installed.)
+Preparing to replace cpp-4.6 4.6.1-15 (using .../cpp-4.6_4.6.2-2_mipsel.deb) ...
Unpacking replacement cpp-4.6 ...
-Preparing to replace libstdc++6-4.6-dev 4.6.0-13 (using .../libstdc++6-4.6-dev_4.6.1-5_mipsel.deb) ...
+Preparing to replace libstdc++6-4.6-dev 4.6.1-15 (using .../libstdc++6-4.6-dev_4.6.2-2_mipsel.deb) ...
Unpacking replacement libstdc++6-4.6-dev ...
-Preparing to replace g++-4.6 4.6.0-13 (using .../g++-4.6_4.6.1-5_mipsel.deb) ...
+Preparing to replace g++-4.6 4.6.1-15 (using .../g++-4.6_4.6.2-2_mipsel.deb) ...
Unpacking replacement g++-4.6 ...
-Preparing to replace gcc-4.6 4.6.0-13 (using .../gcc-4.6_4.6.1-5_mipsel.deb) ...
+Preparing to replace gcc-4.6 4.6.1-15 (using .../gcc-4.6_4.6.2-2_mipsel.deb) ...
Unpacking replacement gcc-4.6 ...
-Preparing to replace libstdc++6 4.6.0-13 (using .../libstdc++6_4.6.1-5_mipsel.deb) ...
+Preparing to replace libstdc++6 4.6.1-15 (using .../libstdc++6_4.6.2-2_mipsel.deb) ...
Unpacking replacement libstdc++6 ...
-Setting up libstdc++6 (4.6.1-5) ...
-Selecting previously deselected package libpipeline1.
-(Reading database ... 11468 files and directories currently installed.)
-Unpacking libpipeline1 (from .../libpipeline1_1.2.0-3_mipsel.deb) ...
-Selecting previously deselected package libdatrie1.
+Setting up libstdc++6 (4.6.2-2) ...
+Selecting previously unselected package libpipeline1.
+(Reading database ... 10700 files and directories currently installed.)
+Unpacking libpipeline1 (from .../libpipeline1_1.2.0-4_mipsel.deb) ...
+Selecting previously unselected package liblzma5.
+Unpacking liblzma5 (from .../liblzma5_5.1.1alpha+20110809-3_mipsel.deb) ...
+Selecting previously unselected package libpcre3.
+Unpacking libpcre3 (from .../libpcre3_8.12-4_mipsel.deb) ...
+Selecting previously unselected package libglib2.0-0.
+Unpacking libglib2.0-0 (from .../libglib2.0-0_2.28.8-1_mipsel.deb) ...
+Selecting previously unselected package libxml2.
+Unpacking libxml2 (from .../libxml2_2.7.8.dfsg-5_mipsel.deb) ...
+Selecting previously unselected package libcroco3.
+Unpacking libcroco3 (from .../libcroco3_0.6.2-2_mipsel.deb) ...
+Selecting previously unselected package libdatrie1.
Unpacking libdatrie1 (from .../libdatrie1_0.2.4-3_mipsel.deb) ...
-Selecting previously deselected package libexpat1.
-Unpacking libexpat1 (from .../libexpat1_2.0.1-7_mipsel.deb) ...
-Selecting previously deselected package libfreetype6.
-Unpacking libfreetype6 (from .../libfreetype6_2.4.4-2_mipsel.deb) ...
-Selecting previously deselected package ucf.
+Selecting previously unselected package libexpat1.
+Unpacking libexpat1 (from .../libexpat1_2.0.1-7.1_mipsel.deb) ...
+Selecting previously unselected package libfreetype6.
+Unpacking libfreetype6 (from .../libfreetype6_2.4.7-2_mipsel.deb) ...
+Selecting previously unselected package ucf.
Unpacking ucf (from .../ucf_3.0025+nmu2_all.deb) ...
Moving old data out of the way
-Selecting previously deselected package ttf-dejavu-core.
-Unpacking ttf-dejavu-core (from .../ttf-dejavu-core_2.33-1_all.deb) ...
-Selecting previously deselected package fontconfig-config.
+Selecting previously unselected package ttf-dejavu-core.
+Unpacking ttf-dejavu-core (from .../ttf-dejavu-core_2.33-2_all.deb) ...
+Selecting previously unselected package fontconfig-config.
Unpacking fontconfig-config (from .../fontconfig-config_2.8.0-3_all.deb) ...
-Selecting previously deselected package libfontconfig1.
+Selecting previously unselected package libfontconfig1.
Unpacking libfontconfig1 (from .../libfontconfig1_2.8.0-3_mipsel.deb) ...
-Selecting previously deselected package libgfortran3.
-Unpacking libgfortran3 (from .../libgfortran3_4.6.1-5_mipsel.deb) ...
-Selecting previously deselected package x11-common.
-Unpacking x11-common (from .../x11-common_1%3a7.6+7_all.deb) ...
-Selecting previously deselected package libice6.
+Selecting previously unselected package libgfortran3.
+Unpacking libgfortran3 (from .../libgfortran3_4.6.2-2_mipsel.deb) ...
+Selecting previously unselected package x11-common.
+Unpacking x11-common (from .../x11-common_1%3a7.6+9_all.deb) ...
+Selecting previously unselected package libice6.
Unpacking libice6 (from .../libice6_2%3a1.0.7-2_mipsel.deb) ...
-Selecting previously deselected package libpixman-1-0.
-Unpacking libpixman-1-0 (from .../libpixman-1-0_0.22.2-1_mipsel.deb) ...
-Selecting previously deselected package libpng12-0.
+Selecting previously unselected package libpixman-1-0.
+Unpacking libpixman-1-0 (from .../libpixman-1-0_0.23.8-1_mipsel.deb) ...
+Selecting previously unselected package libpng12-0.
Unpacking libpng12-0 (from .../libpng12-0_1.2.46-3_mipsel.deb) ...
-Selecting previously deselected package libxau6.
+Selecting previously unselected package libxau6.
Unpacking libxau6 (from .../libxau6_1%3a1.0.6-3_mipsel.deb) ...
-Selecting previously deselected package libxdmcp6.
+Selecting previously unselected package libxdmcp6.
Unpacking libxdmcp6 (from .../libxdmcp6_1%3a1.1.0-3_mipsel.deb) ...
-Selecting previously deselected package libxcb1.
+Selecting previously unselected package libxcb1.
Unpacking libxcb1 (from .../libxcb1_1.7-3_mipsel.deb) ...
-Selecting previously deselected package libx11-data.
-Unpacking libx11-data (from .../libx11-data_2%3a1.4.4-1_all.deb) ...
-Selecting previously deselected package libx11-6.
-Unpacking libx11-6 (from .../libx11-6_2%3a1.4.4-1_mipsel.deb) ...
-Selecting previously deselected package libxcb-render0.
+Selecting previously unselected package libx11-data.
+Unpacking libx11-data (from .../libx11-data_2%3a1.4.4-2_all.deb) ...
+Selecting previously unselected package libx11-6.
+Unpacking libx11-6 (from .../libx11-6_2%3a1.4.4-2_mipsel.deb) ...
+Selecting previously unselected package libxcb-render0.
Unpacking libxcb-render0 (from .../libxcb-render0_1.7-3_mipsel.deb) ...
-Selecting previously deselected package libxcb-shm0.
+Selecting previously unselected package libxcb-shm0.
Unpacking libxcb-shm0 (from .../libxcb-shm0_1.7-3_mipsel.deb) ...
-Selecting previously deselected package libxrender1.
+Selecting previously unselected package libxrender1.
Unpacking libxrender1 (from .../libxrender1_1%3a0.9.6-2_mipsel.deb) ...
-Selecting previously deselected package libcairo2.
+Selecting previously unselected package libcairo2.
Unpacking libcairo2 (from .../libcairo2_1.10.2-6.1_mipsel.deb) ...
-Selecting previously deselected package libpcre3.
-Unpacking libpcre3 (from .../libpcre3_8.12-3_mipsel.deb) ...
-Selecting previously deselected package libglib2.0-0.
-Unpacking libglib2.0-0 (from .../libglib2.0-0_2.28.6-1_mipsel.deb) ...
-Selecting previously deselected package libthai-data.
+Selecting previously unselected package libthai-data.
Unpacking libthai-data (from .../libthai-data_0.1.15-2_all.deb) ...
-Selecting previously deselected package libthai0.
+Selecting previously unselected package libthai0.
Unpacking libthai0 (from .../libthai0_0.1.15-2_mipsel.deb) ...
-Selecting previously deselected package libxft2.
+Selecting previously unselected package libxft2.
Unpacking libxft2 (from .../libxft2_2.2.0-3_mipsel.deb) ...
-Selecting previously deselected package fontconfig.
+Selecting previously unselected package fontconfig.
Unpacking fontconfig (from .../fontconfig_2.8.0-3_mipsel.deb) ...
-Selecting previously deselected package libpango1.0-0.
-Unpacking libpango1.0-0 (from .../libpango1.0-0_1.28.4-2_mipsel.deb) ...
-Selecting previously deselected package libsm6.
+Selecting previously unselected package libpango1.0-0.
+Unpacking libpango1.0-0 (from .../libpango1.0-0_1.29.4-2_mipsel.deb) ...
+Selecting previously unselected package libpcrecpp0.
+Unpacking libpcrecpp0 (from .../libpcrecpp0_8.12-4_mipsel.deb) ...
+Selecting previously unselected package libsm6.
Unpacking libsm6 (from .../libsm6_2%3a1.2.0-2_mipsel.deb) ...
-Selecting previously deselected package libxext6.
+Selecting previously unselected package libjpeg8.
+Unpacking libjpeg8 (from .../libjpeg8_8c-2_mipsel.deb) ...
+Selecting previously unselected package libtiff4.
+Unpacking libtiff4 (from .../libtiff4_3.9.5-2_mipsel.deb) ...
+Selecting previously unselected package libunistring0.
+Unpacking libunistring0 (from .../libunistring0_0.9.3-5_mipsel.deb) ...
+Selecting previously unselected package libxext6.
Unpacking libxext6 (from .../libxext6_2%3a1.3.0-3_mipsel.deb) ...
-Selecting previously deselected package libxt6.
+Selecting previously unselected package libxss1.
+Unpacking libxss1 (from .../libxss1_1%3a1.2.1-2_mipsel.deb) ...
+Selecting previously unselected package libxt6.
Unpacking libxt6 (from .../libxt6_1%3a1.1.1-2_mipsel.deb) ...
-Selecting previously deselected package bsdmainutils.
+Selecting previously unselected package bsdmainutils.
Unpacking bsdmainutils (from .../bsdmainutils_8.2.3_mipsel.deb) ...
-Selecting previously deselected package groff-base.
+Selecting previously unselected package groff-base.
Unpacking groff-base (from .../groff-base_1.21-6_mipsel.deb) ...
-Selecting previously deselected package man-db.
+Selecting previously unselected package man-db.
Unpacking man-db (from .../man-db_2.6.0.2-2_mipsel.deb) ...
-Selecting previously deselected package libmagic1.
-Unpacking libmagic1 (from .../libmagic1_5.04-5+b1_mipsel.deb) ...
-Selecting previously deselected package file.
-Unpacking file (from .../file_5.04-5+b1_mipsel.deb) ...
-Selecting previously deselected package gettext-base.
-Unpacking gettext-base (from .../gettext-base_0.18.1.1-3_mipsel.deb) ...
-Selecting previously deselected package libxml2.
-Unpacking libxml2 (from .../libxml2_2.7.8.dfsg-4_mipsel.deb) ...
-Selecting previously deselected package html2text.
+Selecting previously unselected package libmagic1.
+Unpacking libmagic1 (from .../libmagic1_5.09-2_mipsel.deb) ...
+Selecting previously unselected package file.
+Unpacking file (from .../file_5.09-2_mipsel.deb) ...
+Selecting previously unselected package gettext-base.
+Unpacking gettext-base (from .../gettext-base_0.18.1.1-5_mipsel.deb) ...
+Selecting previously unselected package cdbs.
+Unpacking cdbs (from .../archives/cdbs_0.4.99_all.deb) ...
+Selecting previously unselected package html2text.
Unpacking html2text (from .../html2text_1.3.2a-15_mipsel.deb) ...
-Selecting previously deselected package libcroco3.
-Unpacking libcroco3 (from .../libcroco3_0.6.2-1_mipsel.deb) ...
-Selecting previously deselected package libunistring0.
-Unpacking libunistring0 (from .../libunistring0_0.9.3-4_mipsel.deb) ...
-Selecting previously deselected package gettext.
-Unpacking gettext (from .../gettext_0.18.1.1-3_mipsel.deb) ...
-Selecting previously deselected package intltool-debian.
+Selecting previously unselected package gettext.
+Unpacking gettext (from .../gettext_0.18.1.1-5_mipsel.deb) ...
+Selecting previously unselected package intltool-debian.
Unpacking intltool-debian (from .../intltool-debian_0.35.0+20060710.1_all.deb) ...
-Selecting previously deselected package po-debconf.
+Selecting previously unselected package po-debconf.
Unpacking po-debconf (from .../po-debconf_1.0.16+nmu1_all.deb) ...
-Selecting previously deselected package debhelper.
-Unpacking debhelper (from .../debhelper_8.9.3_all.deb) ...
-Selecting previously deselected package cdbs.
-Unpacking cdbs (from .../archives/cdbs_0.4.96_all.deb) ...
-Preparing to replace cpp 4:4.6.0-5 (using .../cpp_4%3a4.6.1-2_mipsel.deb) ...
-Unpacking replacement cpp ...
-Selecting previously deselected package dpatch.
-Unpacking dpatch (from .../archives/dpatch_2.0.31_all.deb) ...
-Preparing to replace gcc 4:4.6.0-5 (using .../gcc_4%3a4.6.1-2_mipsel.deb) ...
-Removing old gcc doc directory.
-Unpacking replacement gcc ...
-Selecting previously deselected package gfortran-4.6.
-Unpacking gfortran-4.6 (from .../gfortran-4.6_4.6.1-5_mipsel.deb) ...
-Selecting previously deselected package gfortran.
-Unpacking gfortran (from .../gfortran_4%3a4.6.1-2_mipsel.deb) ...
-Selecting previously deselected package libblas3gf.
-Unpacking libblas3gf (from .../libblas3gf_1.2-8_mipsel.deb) ...
-Selecting previously deselected package libblas-dev.
-Unpacking libblas-dev (from .../libblas-dev_1.2-8_mipsel.deb) ...
-Selecting previously deselected package libbz2-dev.
-Unpacking libbz2-dev (from .../libbz2-dev_1.0.5-6_mipsel.deb) ...
-Selecting previously deselected package libjpeg62.
-Unpacking libjpeg62 (from .../libjpeg62_6b1-2_mipsel.deb) ...
-Selecting previously deselected package libjpeg8.
-Unpacking libjpeg8 (from .../libjpeg8_8c-2_mipsel.deb) ...
-Selecting previously deselected package libjpeg8-dev.
+Selecting previously unselected package debhelper.
+Unpacking debhelper (from .../debhelper_8.9.8_all.deb) ...
+Selecting previously unselected package dpatch.
+Unpacking dpatch (from .../archives/dpatch_2.0.33_all.deb) ...
+Selecting previously unselected package gfortran-4.6.
+Unpacking gfortran-4.6 (from .../gfortran-4.6_4.6.2-2_mipsel.deb) ...
+Selecting previously unselected package gfortran.
+Unpacking gfortran (from .../gfortran_4%3a4.6.1-3_mipsel.deb) ...
+Selecting previously unselected package libblas3gf.
+Unpacking libblas3gf (from .../libblas3gf_1.2.20110419-2_mipsel.deb) ...
+Selecting previously unselected package libblas-dev.
+Unpacking libblas-dev (from .../libblas-dev_1.2.20110419-2_mipsel.deb) ...
+Selecting previously unselected package libbz2-dev.
+Unpacking libbz2-dev (from .../libbz2-dev_1.0.5-7_mipsel.deb) ...
+Selecting previously unselected package libjpeg8-dev.
Unpacking libjpeg8-dev (from .../libjpeg8-dev_8c-2_mipsel.deb) ...
-Selecting previously deselected package liblapack3gf.
-Unpacking liblapack3gf (from .../liblapack3gf_3.3.0-4_mipsel.deb) ...
-Selecting previously deselected package liblapack-dev.
-Unpacking liblapack-dev (from .../liblapack-dev_3.3.0-4_mipsel.deb) ...
-Selecting previously deselected package libncurses5-dev.
-Unpacking libncurses5-dev (from .../libncurses5-dev_5.9-1_mipsel.deb) ...
-Selecting previously deselected package libpaper1.
+Selecting previously unselected package liblapack3gf.
+Unpacking liblapack3gf (from .../liblapack3gf_3.3.1-1_mipsel.deb) ...
+Selecting previously unselected package liblapack-dev.
+Unpacking liblapack-dev (from .../liblapack-dev_3.3.1-1_mipsel.deb) ...
+Selecting previously unselected package libtinfo-dev.
+Unpacking libtinfo-dev (from .../libtinfo-dev_5.9-2_mipsel.deb) ...
+Selecting previously unselected package libncurses5-dev.
+Unpacking libncurses5-dev (from .../libncurses5-dev_5.9-2_mipsel.deb) ...
+Selecting previously unselected package libpaper1.
Unpacking libpaper1 (from .../libpaper1_1.1.24+nmu1_mipsel.deb) ...
-Selecting previously deselected package libpaper-utils.
+Selecting previously unselected package libpaper-utils.
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-Selecting previously deselected package libpcrecpp0.
-Unpacking libpcrecpp0 (from .../libpcrecpp0_8.12-3_mipsel.deb) ...
-Selecting previously deselected package libpcre3-dev.
-Unpacking libpcre3-dev (from .../libpcre3-dev_8.12-3_mipsel.deb) ...
-Selecting previously deselected package zlib1g-dev.
+Selecting previously unselected package libpcre3-dev.
+Unpacking libpcre3-dev (from .../libpcre3-dev_8.12-4_mipsel.deb) ...
+Selecting previously unselected package zlib1g-dev.
Unpacking zlib1g-dev (from .../zlib1g-dev_1%3a1.2.3.4.dfsg-3_mipsel.deb) ...
-Selecting previously deselected package libpng12-dev.
+Selecting previously unselected package libpng12-dev.
Unpacking libpng12-dev (from .../libpng12-dev_1.2.46-3_mipsel.deb) ...
-Selecting previously deselected package libreadline6-dev.
-Unpacking libreadline6-dev (from .../libreadline6-dev_6.2-2_mipsel.deb) ...
-Selecting previously deselected package libreadline-dev.
-Unpacking libreadline-dev (from .../libreadline-dev_6.2-2_mipsel.deb) ...
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-Selecting previously deselected package libxss1.
-Unpacking libxss1 (from .../libxss1_1%3a1.2.1-1_mipsel.deb) ...
-Selecting previously deselected package zip.
+Selecting previously unselected package libreadline6-dev.
+Unpacking libreadline6-dev (from .../libreadline6-dev_6.2-7_mipsel.deb) ...
+Selecting previously unselected package libreadline-dev.
+Unpacking libreadline-dev (from .../libreadline-dev_6.2-7_mipsel.deb) ...
+Selecting previously unselected package zip.
Unpacking zip (from .../archives/zip_3.0-4_mipsel.deb) ...
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+Selecting previously unselected package unzip.
Unpacking unzip (from .../unzip_6.0-5_mipsel.deb) ...
-Selecting previously deselected package xdg-utils.
+Selecting previously unselected package xdg-utils.
Unpacking xdg-utils (from .../xdg-utils_1.1.0~rc1-2_all.deb) ...
-Selecting previously deselected package tcl8.5.
+Selecting previously unselected package tcl8.5.
Unpacking tcl8.5 (from .../tcl8.5_8.5.10-1_mipsel.deb) ...
-Selecting previously deselected package tk8.5.
+Selecting previously unselected package tk8.5.
Unpacking tk8.5 (from .../tk8.5_8.5.10-1_mipsel.deb) ...
-Selecting previously deselected package r-base-core.
-Unpacking r-base-core (from .../r-base-core_2.13.1-1_mipsel.deb) ...
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-Unpacking r-base-dev (from .../r-base-dev_2.13.1-1_all.deb) ...
-Setting up libgomp1 (4.6.1-5) ...
-Setting up gcc-4.4-base (4.4.6-7) ...
-Setting up cpp-4.4 (4.4.6-7) ...
-Setting up gcc-4.4 (4.4.6-7) ...
-Setting up cpp-4.6 (4.6.1-5) ...
-Setting up gcc-4.6 (4.6.1-5) ...
-Setting up libpipeline1 (1.2.0-3) ...
+Selecting previously unselected package r-base-core.
+Unpacking r-base-core (from .../r-base-core_2.14.0-1_mipsel.deb) ...
+Selecting previously unselected package r-base-dev.
+Unpacking r-base-dev (from .../r-base-dev_2.14.0-1_all.deb) ...
+Setting up libgomp1 (4.6.2-2) ...
+Setting up cpp-4.6 (4.6.2-2) ...
+Setting up gcc-4.6 (4.6.2-2) ...
+Setting up libpipeline1 (1.2.0-4) ...
+Setting up liblzma5 (5.1.1alpha+20110809-3) ...
+Setting up libpcre3 (8.12-4) ...
+Setting up libglib2.0-0 (2.28.8-1) ...
+No schema files found: doing nothing.
+Setting up libxml2 (2.7.8.dfsg-5) ...
+Setting up libcroco3 (0.6.2-2) ...
Setting up libdatrie1 (0.2.4-3) ...
-Setting up libexpat1 (2.0.1-7) ...
-Setting up libfreetype6 (2.4.4-2) ...
+Setting up libexpat1 (2.0.1-7.1) ...
+Setting up libfreetype6 (2.4.7-2) ...
Setting up ucf (3.0025+nmu2) ...
-Setting up ttf-dejavu-core (2.33-1) ...
+Setting up ttf-dejavu-core (2.33-2) ...
Setting up fontconfig-config (2.8.0-3) ...
Setting up libfontconfig1 (2.8.0-3) ...
-Setting up libgfortran3 (4.6.1-5) ...
-Setting up x11-common (1:7.6+7) ...
+Setting up libgfortran3 (4.6.2-2) ...
+Setting up x11-common (1:7.6+9) ...
All runlevel operations denied by policy
invoke-rc.d: policy-rc.d denied execution of start.
Setting up libice6 (2:1.0.7-2) ...
-Setting up libpixman-1-0 (0.22.2-1) ...
+Setting up libpixman-1-0 (0.23.8-1) ...
Setting up libpng12-0 (1.2.46-3) ...
Setting up libxau6 (1:1.0.6-3) ...
Setting up libxdmcp6 (1:1.1.0-3) ...
Setting up libxcb1 (1.7-3) ...
-Setting up libx11-data (2:1.4.4-1) ...
-Setting up libx11-6 (2:1.4.4-1) ...
+Setting up libx11-data (2:1.4.4-2) ...
+Setting up libx11-6 (2:1.4.4-2) ...
Setting up libxcb-render0 (1.7-3) ...
Setting up libxcb-shm0 (1.7-3) ...
Setting up libxrender1 (1:0.9.6-2) ...
Setting up libcairo2 (1.10.2-6.1) ...
-Setting up libpcre3 (8.12-3) ...
-Setting up libglib2.0-0 (2.28.6-1) ...
-No schema files found: doing nothing.
Setting up libthai-data (0.1.15-2) ...
Setting up libthai0 (0.1.15-2) ...
Setting up libxft2 (2.2.0-3) ...
Setting up fontconfig (2.8.0-3) ...
Cleaning up old fontconfig caches... done.
Regenerating fonts cache... done.
-Setting up libpango1.0-0 (1.28.4-2) ...
+Setting up libpango1.0-0 (1.29.4-2) ...
+Setting up libpcrecpp0 (8.12-4) ...
Setting up libsm6 (2:1.2.0-2) ...
+Setting up libjpeg8 (8c-2) ...
+Setting up libtiff4 (3.9.5-2) ...
+Setting up libunistring0 (0.9.3-5) ...
Setting up libxext6 (2:1.3.0-3) ...
+Setting up libxss1 (1:1.2.1-2) ...
Setting up libxt6 (1:1.1.1-2) ...
Setting up bsdmainutils (8.2.3) ...
update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode.
@@ -490,49 +525,40 @@ update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in
Setting up groff-base (1.21-6) ...
Setting up man-db (2.6.0.2-2) ...
Building database of manual pages ...
-Setting up libmagic1 (5.04-5+b1) ...
-Setting up file (5.04-5+b1) ...
-Setting up gettext-base (0.18.1.1-3) ...
-Setting up libxml2 (2.7.8.dfsg-4) ...
+Setting up libmagic1 (5.09-2) ...
+Setting up file (5.09-2) ...
+Setting up gettext-base (0.18.1.1-5) ...
+Setting up cdbs (0.4.99) ...
Setting up html2text (1.3.2a-15) ...
-Setting up libcroco3 (0.6.2-1) ...
-Setting up libunistring0 (0.9.3-4) ...
-Setting up gettext (0.18.1.1-3) ...
+Setting up gettext (0.18.1.1-5) ...
Setting up intltool-debian (0.35.0+20060710.1) ...
Setting up po-debconf (1.0.16+nmu1) ...
-Setting up debhelper (8.9.3) ...
-Setting up cdbs (0.4.96) ...
-Setting up cpp (4:4.6.1-2) ...
-Setting up dpatch (2.0.31) ...
-Setting up gcc (4:4.6.1-2) ...
-Setting up gfortran-4.6 (4.6.1-5) ...
-Setting up gfortran (4:4.6.1-2) ...
+Setting up debhelper (8.9.8) ...
+Setting up dpatch (2.0.33) ...
+Setting up gfortran-4.6 (4.6.2-2) ...
+Setting up gfortran (4:4.6.1-3) ...
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode.
-Setting up libblas3gf (1.2-8) ...
+Setting up libblas3gf (1.2.20110419-2) ...
update-alternatives: using /usr/lib/libblas/libblas.so.3gf to provide /usr/lib/libblas.so.3gf (libblas.so.3gf) in auto mode.
-Setting up libblas-dev (1.2-8) ...
+Setting up libblas-dev (1.2.20110419-2) ...
update-alternatives: using /usr/lib/libblas/libblas.so to provide /usr/lib/libblas.so (libblas.so) in auto mode.
-Setting up libbz2-dev (1.0.5-6) ...
-Setting up libjpeg62 (6b1-2) ...
-Setting up libjpeg8 (8c-2) ...
+Setting up libbz2-dev (1.0.5-7) ...
Setting up libjpeg8-dev (8c-2) ...
-Setting up liblapack3gf (3.3.0-4) ...
+Setting up liblapack3gf (3.3.1-1) ...
update-alternatives: using /usr/lib/lapack/liblapack.so.3gf to provide /usr/lib/liblapack.so.3gf (liblapack.so.3gf) in auto mode.
-Setting up liblapack-dev (3.3.0-4) ...
+Setting up liblapack-dev (3.3.1-1) ...
update-alternatives: using /usr/lib/lapack/liblapack.so to provide /usr/lib/liblapack.so (liblapack.so) in auto mode.
-Setting up libncurses5-dev (5.9-1) ...
+Setting up libtinfo-dev (5.9-2) ...
+Setting up libncurses5-dev (5.9-2) ...
Setting up libpaper1 (1.1.24+nmu1) ...
Creating config file /etc/papersize with new version
Setting up libpaper-utils (1.1.24+nmu1) ...
-Setting up libpcrecpp0 (8.12-3) ...
-Setting up libpcre3-dev (8.12-3) ...
+Setting up libpcre3-dev (8.12-4) ...
Setting up zlib1g-dev (1:1.2.3.4.dfsg-3) ...
Setting up libpng12-dev (1.2.46-3) ...
-Setting up libreadline6-dev (6.2-2) ...
-Setting up libreadline-dev (6.2-2) ...
-Setting up libtiff4 (3.9.5-1) ...
-Setting up libxss1 (1:1.2.1-1) ...
+Setting up libreadline6-dev (6.2-7) ...
+Setting up libreadline-dev (6.2-7) ...
Setting up zip (3.0-4) ...
Setting up unzip (6.0-5) ...
Setting up xdg-utils (1.1.0~rc1-2) ...
@@ -540,20 +566,22 @@ Setting up tcl8.5 (8.5.10-1) ...
update-alternatives: using /usr/bin/tclsh8.5 to provide /usr/bin/tclsh (tclsh) in auto mode.
Setting up tk8.5 (8.5.10-1) ...
update-alternatives: using /usr/bin/wish8.5 to provide /usr/bin/wish (wish) in auto mode.
-Setting up r-base-core (2.13.1-1) ...
+Setting up r-base-core (2.14.0-1) ...
Setting R_PAPERSIZE_USER default to 'a4'
Creating config file /etc/R/Renviron with new version
-Setting up r-base-dev (2.13.1-1) ...
-Setting up g++-4.4 (4.4.6-7) ...
-Setting up libstdc++6-4.6-dev (4.6.1-5) ...
-Setting up libstdc++6-4.4-dev (4.4.6-7) ...
-Setting up g++-4.6 (4.6.1-5) ...
+Setting up r-base-dev (2.14.0-1) ...
+Setting up libstdc++6-4.6-dev (4.6.2-2) ...
+Setting up g++-4.6 (4.6.2-2) ...
Removing negative dependencies:
-Checking correctness of source dependencies...
-Kernel: Linux 2.6.36-rc6-loongson-2f mipsel (mips64)
-Toolchain package versions: libc6-dev_2.13-7 dpkg-dev_1.16.0.3 linux-libc-dev_2.6.39-2 gcc-4.6_4.6.1-5 g++-4.6_4.6.1-5 binutils_2.21.52.20110606-2 libstdc++6-4.6-dev_4.6.1-5 libstdc++6_4.6.1-5
-Package versions: apt_0.8.14.1 base-files_6.4 base-passwd_3.5.22 bash_4.1-3 binutils_2.21.52.20110606-2 bsdmainutils_8.2.3 bsdutils_1:2.17.2-9.1 build-essential_11.5 bzip2_1.0.5-6 cdbs_0.4.96 coreutils_8.5-1 cpp_4:4.6.1-2 cpp-4.4_4.4.6-7 cpp-4.6_4.6.1-5 dash_0.5.5.1-7.4 debconf_1.5.39 debconf-english_1.5.38 debfoster_2.7-1.1 debhelper_8.9.3 debian-archive-keyring_2010.08.28 debianutils_4.0.2 diffutils_1:3.0-1 dpatch_2.0.31 dpkg_1.16.0.3 dpkg-dev_1.16.0.3 e2fslibs_1.41.12-4 e2fsprogs_1.41.12-4 fakeroot_1.16-1 file_5.04-5+b1 findutils_4.4.2-1+b1 fontconfig_2.8.0-3 fontconfig-config_2.8.0-3 g++_4:4.6.0-5 g++-4.4_4.4.6-7 g++-4.6_4.6.1-5 gcc_4:4.6.1-2 gcc-4.4_4.4.6-7 gcc-4.4-base_4.4.6-7 gcc-4.5-base_4.5.3-1 gcc-4.6_4.6.1-5 gcc-4.6-base_4.6.1-5 gettext_0.18.1.1-3 gettext-base_0.18.1.1-3 gfortran_4:4.6.1-2 gfortran-4.6_4.6.1-5 gnupg_1.4.11-3 gpgv_1.4.11-3 grep_2.8-2 groff-base_1.21-6 gzip_1.3.12-9 hostname_3.06 html2text_1.3.2a-15 initscripts_2.88dsf-13.10 insserv_1.14.0-2.1 intltool-debian_0.35.0+20060710.1 libacl1_2.2.49-5 libattr1_1:2.4.44-3 libblas-dev_1.2-8 libblas3gf_1.2-8 libblkid1_2.17.2-9.1 libbz2-1.0_1.0.5-6 libbz2-dev_1.0.5-6 libc-bin_2.13-7 libc-dev-bin_2.13-7 libc6_2.13-7 libc6-dev_2.13-7 libcairo2_1.10.2-6.1 libcloog-ppl0_0.15.9-3 libcomerr2_1.41.12-4 libcroco3_0.6.2-1 libdatrie1_0.2.4-3 libdb4.7_4.7.25-20 libdb4.8_4.8.30-8 libdb5.1_5.1.25-10 libdpkg-perl_1.16.0.3 libexpat1_2.0.1-7 libfontconfig1_2.8.0-3 libfreetype6_2.4.4-2 libgc1c2_1:7.1-8 libgcc1_1:4.6.1-5 libgdbm3_1.8.3-9 libgfortran3_4.6.1-5 libglib2.0-0_2.28.6-1 libgmp10_2:5.0.1+dfsg-7 libgmp3c2_2:4.3.2+dfsg-2 libgmpxx4ldbl_2:5.0.1+dfsg-7 libgomp1_4.6.1-5 libice6_2:1.0.7-2 libjpeg62_6b1-2 libjpeg8_8c-2 libjpeg8-dev_8c-2 liblapack-dev_3.3.0-4 liblapack3gf_3.3.0-4 liblzma2_5.0.0-2 libmagic1_5.04-5+b1 libmpc2_0.9-3 libmpfr1ldbl_2.4.2-3 libmpfr4_3.0.1-3 libncurses5_5.9-1 libncurses5-dev_5.9-1 libpam-modules_1.1.3-1 libpam-runtime_1.1.3-1 libpam0g_1.1.3-1 libpango1.0-0_1.28.4-2 libpaper-utils_1.1.24+nmu1 libpaper1_1.1.24+nmu1 libpcre3_8.12-3 libpcre3-dev_8.12-3 libpcrecpp0_8.12-3 libpipeline1_1.2.0-3 libpixman-1-0_0.22.2-1 libpng12-0_1.2.46-3 libpng12-dev_1.2.46-3 libppl-c4_0.11.2-3 libppl9_0.11.2-3 libpwl5_0.11.2-3 libreadline-dev_6.2-2 libreadline6_6.2-2 libreadline6-dev_6.2-2 libselinux1_2.0.98-1+b1 libsepol1_2.0.42-1 libslang2_2.2.4-2 libsm6_2:1.2.0-2 libss2_1.41.12-4 libstdc++6_4.6.1-5 libstdc++6-4.4-dev_4.4.6-7 libstdc++6-4.6-dev_4.6.1-5 libthai-data_0.1.15-2 libthai0_0.1.15-2 libtiff4_3.9.5-1 libtimedate-perl_1.2000-1 libunistring0_0.9.3-4 libusb-0.1-4_2:0.1.12-17 libuuid1_2.17.2-9.1 libx11-6_2:1.4.4-1 libx11-data_2:1.4.4-1 libxau6_1:1.0.6-3 libxcb-render0_1.7-3 libxcb-shm0_1.7-3 libxcb1_1.7-3 libxdmcp6_1:1.1.0-3 libxext6_2:1.3.0-3 libxft2_2.2.0-3 libxml2_2.7.8.dfsg-4 libxrender1_1:0.9.6-2 libxss1_1:1.2.1-1 libxt6_1:1.1.1-2 linux-libc-dev_2.6.39-2 login_1:4.1.4.2+svn3283-3 lsb-base_3.2-27 lzma_4.43-14 make_3.81-8.1 man-db_2.6.0.2-2 mawk_1.3.3-15 mount_2.17.2-9.1 multiarch-support_2.13-7 ncurses-base_5.9-1 ncurses-bin_5.9-1 passwd_1:4.1.4.2+svn3283-3 patch_2.6.1-2 perl_5.12.3-7+b1 perl-base_5.12.3-7+b1 perl-modules_5.12.3-7 po-debconf_1.0.16+nmu1 r-base-core_2.13.1-1 r-base-dev_2.13.1-1 readline-common_6.2-2 sed_4.2.1-9 sensible-utils_0.0.6 sudo_1.7.4p6-1 sysv-rc_2.88dsf-13.10 sysvinit_2.88dsf-13.10 sysvinit-utils_2.88dsf-13.10 tar_1.25-3 tcl8.5_8.5.10-1 tk8.5_8.5.10-1 ttf-dejavu-core_2.33-1 tzdata_2011g-1 ucf_3.0025+nmu2 unzip_6.0-5 util-linux_2.17.2-9.1 x11-common_1:7.6+7 xdg-utils_1.1.0~rc1-2 xz-utils_5.0.0-2 zip_3.0-4 zlib1g_1:1.2.3.4.dfsg-3 zlib1g-dev_1:1.2.3.4.dfsg-3
+Reading package lists...
+Building dependency tree...
+Reading state information...
+0 upgraded, 0 newly installed, 0 to remove and 16 not upgraded.
+Checking correctness of dependencies...
+Kernel: Linux 2.6.39-3-loongson-2e mipsel (mips64)
+Toolchain package versions: binutils_2.21.90.20111004-2 dpkg-dev_1.16.1.1 g++-4.6_4.6.2-2 gcc-4.6_4.6.2-2 libc6-dev_2.13-21 libstdc++6_4.6.2-2 libstdc++6-4.6-dev_4.6.2-2 linux-libc-dev_3.0.0-5
+Package versions: apt_0.8.15.9 base-files_6.5 base-passwd_3.5.23 bash_4.1-3 binutils_2.21.90.20111004-2 bsdmainutils_8.2.3 bsdutils_1:2.19.1-5 build-essential_11.5 bzip2_1.0.5-7 cdbs_0.4.99 coreutils_8.13-3 cpp_4:4.6.1-3 cpp-4.6_4.6.2-2 dash_0.5.7-2 debconf_1.5.41 debconf-i18n_1.5.41 debfoster_2.7-1.1 debhelper_8.9.8 debian-archive-keyring_2010.08.28 debianutils_4.0.4 diffutils_1:3.0-1 dpatch_2.0.33 dpkg_1.16.1.1 dpkg-dev_1.16.1.1 e2fslibs_1.42~WIP-2011-10-09-1 e2fsprogs_1.42~WIP-2011-10-09-1 fakeroot_1.18.1-1 file_5.09-2 findutils_4.4.2-1+b1 fontconfig_2.8.0-3 fontconfig-config_2.8.0-3 g++_4:4.6.1-3 g++-4.6_4.6.2-2 gcc_4:4.6.1-3 gcc-4.4-base_4.4.6-11 gcc-4.5-base_4.5.3-9 gcc-4.6_4.6.2-2 gcc-4.6-base_4.6.2-2 gettext_0.18.1.1-5 gettext-base_0.18.1.1-5 gfortran_4:4.6.1-3 gfortran-4.6_4.6.2-2 gnupg_1.4.11-3 gpgv_1.4.11-3 grep_2.9-2 groff-base_1.21-6 gzip_1.4-1 hostname_3.06 html2text_1.3.2a-15 initscripts_2.88dsf-13.12 insserv_1.14.0-2.1 intltool-debian_0.35.0+20060710.1 libacl1_2.2.51-3 libattr1_1:2.4.46-3 libblas-dev_1.2.20110419-2 libblas3gf_1.2.20110419-2 libblkid1_2.19.1-5 libbz2-1.0_1.0.5-7 libbz2-dev_1.0.5-7 libc-bin_2.13-21 libc-dev-bin_2.13-21 libc6_2.13-21 libc6-dev_2.13-21 libcairo2_1.10.2-6.1 libcomerr2_1.42~WIP-2011-10-09-1 libcroco3_0.6.2-2 libdatrie1_0.2.4-3 libdb5.1_5.1.25-11 libdpkg-perl_1.16.1.1 libexpat1_2.0.1-7.1 libfontconfig1_2.8.0-3 libfreetype6_2.4.7-2 libgc1c2_1:7.1-8 libgcc1_1:4.6.2-2 libgdbm3_1.8.3-10 libgfortran3_4.6.2-2 libglib2.0-0_2.28.8-1 libgmp10_2:5.0.2+dfsg-1 libgomp1_4.6.2-2 libice6_2:1.0.7-2 libjpeg8_8c-2 libjpeg8-dev_8c-2 liblapack-dev_3.3.1-1 liblapack3gf_3.3.1-1 liblocale-gettext-perl_1.05-7 liblzma2_5.1.1alpha+20110809-2 liblzma5_5.1.1alpha+20110809-3 libmagic1_5.09-2 libmount1_2.19.1-5 libmpc2_0.9-4 libmpfr4_3.1.0-2 libncurses5_5.9-2 libncurses5-dev_5.9-2 libpam-modules_1.1.3-4 libpam-modules-bin_1.1.3-4 libpam-runtime_1.1.3-4 libpam0g_1.1.3-4 libpango1.0-0_1.29.4-2 libpaper-utils_1.1.24+nmu1 libpaper1_1.1.24+nmu1 libpcre3_8.12-4 libpcre3-dev_8.12-4 libpcrecpp0_8.12-4 libpipeline1_1.2.0-4 libpixman-1-0_0.23.8-1 libpng12-0_1.2.46-3 libpng12-dev_1.2.46-3 libreadline-dev_6.2-7 libreadline6_6.2-7 libreadline6-dev_6.2-7 libselinux1_2.1.0-1 libsepol1_2.1.0-1.1 libslang2_2.2.4-3 libsm6_2:1.2.0-2 libss2_1.42~WIP-2011-10-09-1 libstdc++6_4.6.2-2 libstdc++6-4.6-dev_4.6.2-2 libtext-charwidth-perl_0.04-7 libtext-iconv-perl_1.7-4 libtext-wrapi18n-perl_0.06-7 libthai-data_0.1.15-2 libthai0_0.1.15-2 libtiff4_3.9.5-2 libtimedate-perl_1.2000-1 libtinfo-dev_5.9-2 libtinfo5_5.9-2 libunistring0_0.9.3-5 libusb-0.1-4_2:0.1.12-19 libuuid1_2.19.1-5 libx11-6_2:1.4.4-2 libx11-data_2:1.4.4-2 libxau6_1:1.0.6-3 libxcb-render0_1.7-3 libxcb-shm0_1.7-3 libxcb1_1.7-3 libxdmcp6_1:1.1.0-3 libxext6_2:1.3.0-3 libxft2_2.2.0-3 libxml2_2.7.8.dfsg-5 libxrender1_1:0.9.6-2 libxss1_1:1.2.1-2 libxt6_1:1.1.1-2 linux-libc-dev_3.0.0-5 login_1:4.1.4.2+svn3283-3 lsb-base_3.2-28 make_3.81-8.1 man-db_2.6.0.2-2 mawk_1.3.3-15 mount_2.19.1-5 multiarch-support_2.13-21 ncurses-base_5.9-2 ncurses-bin_5.9-2 passwd_1:4.1.4.2+svn3283-3 patch_2.6.1-2 perl_5.12.4-6 perl-base_5.12.4-6 perl-modules_5.12.4-6 po-debconf_1.0.16+nmu1 r-base-core_2.14.0-1 r-base-dev_2.14.0-1 readline-common_6.2-7 sed_4.2.1-9 sensible-utils_0.0.6 sudo_1.8.2-2 sysv-rc_2.88dsf-13.12 sysvinit_2.88dsf-13.12 sysvinit-utils_2.88dsf-13.12 tar_1.26-2 tcl8.5_8.5.10-1 tk8.5_8.5.10-1 ttf-dejavu-core_2.33-2 tzdata_2011l-1 ucf_3.0025+nmu2 unzip_6.0-5 util-linux_2.19.1-5 x11-common_1:7.6+9 xdg-utils_1.1.0~rc1-2 xz-utils_5.1.1alpha+20110809-2 zip_3.0-4 zlib1g_1:1.2.3.4.dfsg-3 zlib1g-dev_1:1.2.3.4.dfsg-3
┌──────────────────────────────────────────────────────────────────────────────┐
│ Build │
@@ -564,12 +592,12 @@ Unpack source
─────────────
gpgv: keyblock resource `/home/buildd/.gnupg/trustedkeys.gpg': file open error
-gpgv: Signature made Thu Aug 4 00:12:34 2011 UTC using RSA key ID 2295D502
+gpgv: Signature made Wed Nov 2 05:31:37 2011 UTC using RSA key ID 2295D502
gpgv: Can't check signature: public key not found
-dpkg-source: warning: failed to verify signature on ./r-bioc-biobase_2.12.2-1.dsc
-dpkg-source: info: extracting r-bioc-biobase in r-bioc-biobase-2.12.2
-dpkg-source: info: unpacking r-bioc-biobase_2.12.2.orig.tar.gz
-dpkg-source: info: applying r-bioc-biobase_2.12.2-1.diff.gz
+dpkg-source: warning: failed to verify signature on ./r-bioc-biobase_2.14.0-1.dsc
+dpkg-source: info: extracting r-bioc-biobase in r-bioc-biobase-2.14.0
+dpkg-source: info: unpacking r-bioc-biobase_2.14.0.orig.tar.gz
+dpkg-source: info: applying r-bioc-biobase_2.14.0-1.diff.gz
Check disc space
────────────────
@@ -578,24 +606,19 @@ Check disc space
dpkg-buildpackage
─────────────────
-dpkg-buildpackage: export CFLAGS from dpkg-buildflags (origin: vendor): -g -O2
-dpkg-buildpackage: export CPPFLAGS from dpkg-buildflags (origin: vendor):
-dpkg-buildpackage: export CXXFLAGS from dpkg-buildflags (origin: vendor): -g -O2
-dpkg-buildpackage: export FFLAGS from dpkg-buildflags (origin: vendor): -g -O2
-dpkg-buildpackage: export LDFLAGS from dpkg-buildflags (origin: vendor):
dpkg-buildpackage: source package r-bioc-biobase
-dpkg-buildpackage: source version 2.12.2-1
- dpkg-source --before-build r-bioc-biobase-2.12.2
+dpkg-buildpackage: source version 2.14.0-1
+ dpkg-source --before-build r-bioc-biobase-2.14.0
dpkg-buildpackage: host architecture mipsel
- /usr/bin/fakeroot debian/rules clean
+ fakeroot debian/rules clean
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
test -x debian/rules
dh_testroot
/usr/bin/make -f debian/rules reverse-config
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
-make[1]: Entering directory `/build/buildd-r-bioc-biobase_2.12.2-1-mipsel-VAOhJw/r-bioc-biobase-2.12.2'
+make[1]: Entering directory `/build/buildd-r-bioc-biobase_2.14.0-1-mipsel-e8fesc/r-bioc-biobase-2.14.0'
make[1]: Nothing to be done for `reverse-config'.
-make[1]: Leaving directory `/build/buildd-r-bioc-biobase_2.12.2-1-mipsel-VAOhJw/r-bioc-biobase-2.12.2'
+make[1]: Leaving directory `/build/buildd-r-bioc-biobase_2.14.0-1-mipsel-e8fesc/r-bioc-biobase-2.14.0'
if [ "reverse-patches" = "reverse-patches" ]; then rm -f debian/stamp-patched; fi
patches:
if [ "reverse-patches" != "reverse-patches" ]; then touch debian/stamp-patched; fi
@@ -615,11 +638,12 @@ rm -f config.log config.status
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
test -x debian/rules
mkdir -p "."
+/usr/share/cdbs/1/rules/buildcore.mk:109: WARNING: DEB_DH_BUILDDEB_ARGS is a deprecated variable
/usr/bin/make -f debian/rules reverse-config
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
-make[1]: Entering directory `/build/buildd-r-bioc-biobase_2.12.2-1-mipsel-VAOhJw/r-bioc-biobase-2.12.2'
+make[1]: Entering directory `/build/buildd-r-bioc-biobase_2.14.0-1-mipsel-e8fesc/r-bioc-biobase-2.14.0'
make[1]: Nothing to be done for `reverse-config'.
-make[1]: Leaving directory `/build/buildd-r-bioc-biobase_2.12.2-1-mipsel-VAOhJw/r-bioc-biobase-2.12.2'
+make[1]: Leaving directory `/build/buildd-r-bioc-biobase_2.14.0-1-mipsel-e8fesc/r-bioc-biobase-2.14.0'
if [ "debian/stamp-patched" = "reverse-patches" ]; then rm -f debian/stamp-patched; fi
patches:
if [ "debian/stamp-patched" != "reverse-patches" ]; then touch debian/stamp-patched; fi
@@ -627,39 +651,40 @@ if [ "debian/stamp-patched" != "reverse-patches" ] ; then \
/usr/bin/make -f debian/rules update-config ; \
fi
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
-make[1]: Entering directory `/build/buildd-r-bioc-biobase_2.12.2-1-mipsel-VAOhJw/r-bioc-biobase-2.12.2'
+make[1]: Entering directory `/build/buildd-r-bioc-biobase_2.14.0-1-mipsel-e8fesc/r-bioc-biobase-2.14.0'
make[1]: Nothing to be done for `update-config'.
-make[1]: Leaving directory `/build/buildd-r-bioc-biobase_2.12.2-1-mipsel-VAOhJw/r-bioc-biobase-2.12.2'
- /usr/bin/fakeroot debian/rules binary-arch
+make[1]: Leaving directory `/build/buildd-r-bioc-biobase_2.14.0-1-mipsel-e8fesc/r-bioc-biobase-2.14.0'
+ fakeroot debian/rules binary-arch
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
test -x debian/rules
dh_testroot
dh_prep
dh_installdirs -A
mkdir -p "."
+/usr/share/cdbs/1/rules/buildcore.mk:109: WARNING: DEB_DH_BUILDDEB_ARGS is a deprecated variable
dh_installdirs usr/lib/R/site-library
if test -f /usr/bin/xvfb-run; then \
xvfb-run -a \
- R CMD INSTALL -l /build/buildd-r-bioc-biobase_2.12.2-1-mipsel-VAOhJw/r-bioc-biobase-2.12.2/debian/r-bioc-biobase/usr/lib/R/site-library --clean \
+ R CMD INSTALL -l /build/buildd-r-bioc-biobase_2.14.0-1-mipsel-e8fesc/r-bioc-biobase-2.14.0/debian/r-bioc-biobase/usr/lib/R/site-library --clean \
. ; \
else \
- R CMD INSTALL -l /build/buildd-r-bioc-biobase_2.12.2-1-mipsel-VAOhJw/r-bioc-biobase-2.12.2/debian/r-bioc-biobase/usr/lib/R/site-library \
+ R CMD INSTALL -l /build/buildd-r-bioc-biobase_2.14.0-1-mipsel-e8fesc/r-bioc-biobase-2.14.0/debian/r-bioc-biobase/usr/lib/R/site-library \
--clean . ;\
fi
* installing *source* package 'Biobase' ...
** libs
-make[1]: Entering directory `/build/buildd-r-bioc-biobase_2.12.2-1-mipsel-VAOhJw/r-bioc-biobase-2.12.2/src'
-gcc -I/usr/share/R/include -fpic -std=gnu99 -g0 -g -c Rinit.c -o Rinit.o
-gcc -I/usr/share/R/include -fpic -std=gnu99 -g0 -g -c anyMissing.c -o anyMissing.o
-gcc -I/usr/share/R/include -fpic -std=gnu99 -g0 -g -c envir.c -o envir.o
-gcc -I/usr/share/R/include -fpic -std=gnu99 -g0 -g -c matchpt.c -o matchpt.o
-gcc -I/usr/share/R/include -fpic -std=gnu99 -g0 -g -c rowMedians.c -o rowMedians.o
-gcc -I/usr/share/R/include -fpic -std=gnu99 -g0 -g -c sublist_extract.c -o sublist_extract.o
-gcc -shared -o Biobase.so Rinit.o anyMissing.o envir.o matchpt.o rowMedians.o sublist_extract.o -L/usr/lib/R/lib -lR
-make[1]: Leaving directory `/build/buildd-r-bioc-biobase_2.12.2-1-mipsel-VAOhJw/r-bioc-biobase-2.12.2/src'
-make[1]: Entering directory `/build/buildd-r-bioc-biobase_2.12.2-1-mipsel-VAOhJw/r-bioc-biobase-2.12.2/src'
-make[1]: Leaving directory `/build/buildd-r-bioc-biobase_2.12.2-1-mipsel-VAOhJw/r-bioc-biobase-2.12.2/src'
-installing to /build/buildd-r-bioc-biobase_2.12.2-1-mipsel-VAOhJw/r-bioc-biobase-2.12.2/debian/r-bioc-biobase/usr/lib/R/site-library/Biobase/libs
+make[1]: Entering directory `/build/buildd-r-bioc-biobase_2.14.0-1-mipsel-e8fesc/r-bioc-biobase-2.14.0/src'
+gcc -std=gnu99 -I/usr/share/R/include -fpic -g0 -g -c Rinit.c -o Rinit.o
+gcc -std=gnu99 -I/usr/share/R/include -fpic -g0 -g -c anyMissing.c -o anyMissing.o
+gcc -std=gnu99 -I/usr/share/R/include -fpic -g0 -g -c envir.c -o envir.o
+gcc -std=gnu99 -I/usr/share/R/include -fpic -g0 -g -c matchpt.c -o matchpt.o
+gcc -std=gnu99 -I/usr/share/R/include -fpic -g0 -g -c rowMedians.c -o rowMedians.o
+gcc -std=gnu99 -I/usr/share/R/include -fpic -g0 -g -c sublist_extract.c -o sublist_extract.o
+gcc -std=gnu99 -shared -o Biobase.so Rinit.o anyMissing.o envir.o matchpt.o rowMedians.o sublist_extract.o -L/usr/lib/R/lib -lR
+make[1]: Leaving directory `/build/buildd-r-bioc-biobase_2.14.0-1-mipsel-e8fesc/r-bioc-biobase-2.14.0/src'
+make[1]: Entering directory `/build/buildd-r-bioc-biobase_2.14.0-1-mipsel-e8fesc/r-bioc-biobase-2.14.0/src'
+make[1]: Leaving directory `/build/buildd-r-bioc-biobase_2.14.0-1-mipsel-e8fesc/r-bioc-biobase-2.14.0/src'
+installing to /build/buildd-r-bioc-biobase_2.14.0-1-mipsel-e8fesc/r-bioc-biobase-2.14.0/debian/r-bioc-biobase/usr/lib/R/site-library/Biobase/libs
** R
** data
** inst
@@ -667,20 +692,27 @@ installing to /build/buildd-r-bioc-biobase_2.12.2-1-mipsel-VAOhJw/r-bioc-biobase
** help
*** installing help indices
** building package indices ...
+*** tangling vignette sources ...
+ 'BiobaseDevelopment.Rnw'
+ 'Bioconductor.Rnw'
+ 'ExpressionSetIntroduction.Rnw'
+ 'HowTo.Rnw'
+ 'Qviews.Rnw'
+ 'esApply.Rnw'
** testing if installed package can be loaded
* DONE (Biobase)
-rm -vf /build/buildd-r-bioc-biobase_2.12.2-1-mipsel-VAOhJw/r-bioc-biobase-2.12.2/debian/r-bioc-biobase/usr/lib/R/site-library/R.css \
- /build/buildd-r-bioc-biobase_2.12.2-1-mipsel-VAOhJw/r-bioc-biobase-2.12.2/debian/r-bioc-biobase/usr/lib/R/site-library/Biobase/COPYING \
- /build/buildd-r-bioc-biobase_2.12.2-1-mipsel-VAOhJw/r-bioc-biobase-2.12.2/debian/r-bioc-biobase/usr/lib/R/site-library/Biobase/LICENSE.txt
+rm -vf /build/buildd-r-bioc-biobase_2.14.0-1-mipsel-e8fesc/r-bioc-biobase-2.14.0/debian/r-bioc-biobase/usr/lib/R/site-library/R.css \
+ /build/buildd-r-bioc-biobase_2.14.0-1-mipsel-e8fesc/r-bioc-biobase-2.14.0/debian/r-bioc-biobase/usr/lib/R/site-library/Biobase/COPYING \
+ /build/buildd-r-bioc-biobase_2.14.0-1-mipsel-e8fesc/r-bioc-biobase-2.14.0/debian/r-bioc-biobase/usr/lib/R/site-library/Biobase/LICENSE.txt
if test -f debian/overrides; then \
- install -d /build/buildd-r-bioc-biobase_2.12.2-1-mipsel-VAOhJw/r-bioc-biobase-2.12.2/debian/r-bioc-biobase/usr/share/lintian/overrides ; \
+ install -d /build/buildd-r-bioc-biobase_2.14.0-1-mipsel-e8fesc/r-bioc-biobase-2.14.0/debian/r-bioc-biobase/usr/share/lintian/overrides ; \
install -m 0644 debian/overrides \
- /build/buildd-r-bioc-biobase_2.12.2-1-mipsel-VAOhJw/r-bioc-biobase-2.12.2/debian/r-bioc-biobase/usr/share/lintian/overrides/r-bioc-biobase; \
+ /build/buildd-r-bioc-biobase_2.14.0-1-mipsel-e8fesc/r-bioc-biobase-2.14.0/debian/r-bioc-biobase/usr/share/lintian/overrides/r-bioc-biobase; \
fi
Adding cdbs dependencies to debian/r-bioc-biobase.substvars
dh_installdirs -pr-bioc-biobase
-echo "R:Depends=r-base-core (>= 2.13.1~)" >> debian/r-bioc-biobase.substvars
+echo "R:Depends=r-base-core (>= 2.14.0~)" >> debian/r-bioc-biobase.substvars
dh_installdocs -pr-bioc-biobase ./NEWS
dh_installexamples -pr-bioc-biobase
dh_installman -pr-bioc-biobase
@@ -711,58 +743,62 @@ dh_perl -pr-bioc-biobase
dh_shlibdeps -pr-bioc-biobase
dh_gencontrol -pr-bioc-biobase
dh_md5sums -pr-bioc-biobase
-dh_builddeb -pr-bioc-biobase
-dpkg-deb: building package `r-bioc-biobase' in `../r-bioc-biobase_2.12.2-1_mipsel.deb'.
- dpkg-genchanges -B -mmipsel Build Daemon (phrixos) <buildd_mipsel-phrixos at buildd.debian.org> >../r-bioc-biobase_2.12.2-1_mipsel.changes
+dh_builddeb -pr-bioc-biobase -- -Z xz
+dpkg-deb: building package `r-bioc-biobase' in `../r-bioc-biobase_2.14.0-1_mipsel.deb'.
+ dpkg-genchanges -B -mmipsel Build Daemon (eysler) <buildd_mipsel-eysler at buildd.debian.org> >../r-bioc-biobase_2.14.0-1_mipsel.changes
dpkg-genchanges: arch-specific upload - not including arch-independent packages
dpkg-genchanges: binary-only upload - not including any source code
- dpkg-source --after-build r-bioc-biobase-2.12.2
+ dpkg-source --after-build r-bioc-biobase-2.14.0
dpkg-buildpackage: binary only upload (no source included)
────────────────────────────────────────────────────────────────────────────────
-Build finished at 20110804-0032
+Build finished at 20111102-0728
-r-bioc-biobase_2.12.2-1_mipsel.changes:
+r-bioc-biobase_2.14.0-1_mipsel.changes:
Format: 1.8
-Date: Thu, 04 Aug 2011 08:58:03 +0900
+Date: Wed, 02 Nov 2011 13:52:04 +0900
Source: r-bioc-biobase
Binary: r-bioc-biobase
Architecture: mipsel
-Version: 2.12.2-1
+Version: 2.14.0-1
Distribution: sid
Urgency: low
-Maintainer: mipsel Build Daemon (phrixos) <buildd_mipsel-phrixos at buildd.debian.org>
+Maintainer: mipsel Build Daemon (eysler) <buildd_mipsel-eysler at buildd.debian.org>
Changed-By: Charles Plessy <plessy at debian.org>
Description:
r-bioc-biobase - base functions for Bioconductor
Changes:
- r-bioc-biobase (2.12.2-1) unstable; urgency=low
+ r-bioc-biobase (2.14.0-1) unstable; urgency=low
.
- * New upstream release.
+ [cb6b786] Bioconductor release 2.9.
+ [d70e490] Build-Depend on R >= 2.10 according to DESCRIPTION.
+ [ae99e35] Include 7 digits of the commit id in the changelog entry.
+ [33b5d47] Compress binary package with xz.
Checksums-Sha1:
- 35a20f1b3fb456af6fa404e7df43a21134ee9327 2666380 r-bioc-biobase_2.12.2-1_mipsel.deb
+ b90e1367ad9d9e026cf333720cff56ec8cad68d9 2313674 r-bioc-biobase_2.14.0-1_mipsel.deb
Checksums-Sha256:
- 134c329de1330c32f09ad5abb8a6b5d766e97260cd2c021adf683487ca084977 2666380 r-bioc-biobase_2.12.2-1_mipsel.deb
+ 189e8fffecbd2e34dac3e184755c25c118c9c1291435443dc333ef0cb4bfd13f 2313674 r-bioc-biobase_2.14.0-1_mipsel.deb
Files:
- dbe3267a3ec803560c37c8f83bfec3b3 2666380 gnu-r optional r-bioc-biobase_2.12.2-1_mipsel.deb
+ e6ce649f7f89264a19c8dcffec78c8ed 2313674 gnu-r optional r-bioc-biobase_2.14.0-1_mipsel.deb
┌──────────────────────────────────────────────────────────────────────────────┐
│ Package contents │
└──────────────────────────────────────────────────────────────────────────────┘
-r-bioc-biobase_2.12.2-1_mipsel.deb
+r-bioc-biobase_2.14.0-1_mipsel.deb
──────────────────────────────────
new debian package, version 2.0.
- size 2666380 bytes: control archive= 4946 bytes.
- 1188 bytes, 25 lines control
+ size 2313674 bytes: control archive= 4961 bytes.
+ 1218 bytes, 26 lines control
13314 bytes, 141 lines md5sums
Package: r-bioc-biobase
- Version: 2.12.2-1
+ Version: 2.14.0-1
Architecture: mipsel
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
- Installed-Size: 3804
- Depends: libc6 (>= 2.2), r-base-core (>= 2.13.1~)
+ Installed-Size: 3074
+ Pre-Depends: dpkg (>= 1.15.6)
+ Depends: libc6 (>= 2.2), r-base-core (>= 2.14.0~)
Section: gnu-r
Priority: optional
Homepage: http://www.bioconductor.org
@@ -783,177 +819,177 @@ r-bioc-biobase_2.12.2-1_mipsel.deb
unofficial auto-generated Bioconductor packages for Debian and Ubuntu systems,
that are prepared by members of the Debian Med team.
-drwxr-xr-x root/root 0 2011-08-04 00:31 ./
-drwxr-xr-x root/root 0 2011-08-04 00:31 ./usr/
-drwxr-xr-x root/root 0 2011-08-04 00:31 ./usr/share/
-drwxr-xr-x root/root 0 2011-08-04 00:31 ./usr/share/doc/
-drwxr-xr-x root/root 0 2011-08-04 00:31 ./usr/share/doc/r-bioc-biobase/
--rw-r--r-- root/root 1380 2011-07-01 16:14 ./usr/share/doc/r-bioc-biobase/NEWS.gz
--rw-r--r-- root/root 392 2011-08-04 00:29 ./usr/share/doc/r-bioc-biobase/README.Debian
--rw-r--r-- root/root 10574 2011-08-04 00:29 ./usr/share/doc/r-bioc-biobase/copyright
--rw-r--r-- root/root 203 2011-08-04 00:29 ./usr/share/doc/r-bioc-biobase/changelog.Debian.gz
-drwxr-xr-x root/root 0 2011-08-04 00:29 ./usr/lib/
-drwxr-xr-x root/root 0 2011-08-04 00:29 ./usr/lib/R/
-drwxr-xr-x root/root 0 2011-08-04 00:31 ./usr/lib/R/site-library/
-drwxr-xr-x root/root 0 2011-08-04 00:31 ./usr/lib/R/site-library/Biobase/
--rw-r--r-- root/root 1266 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/DESCRIPTION
-drwxr-xr-x root/root 0 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/ExpressionSet/
--rw-r--r-- root/root 212 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/ExpressionSet/DESCRIPTION
-drwxr-xr-x root/root 0 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/ExpressionSet/man/
--rw-r--r-- root/root 180 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/ExpressionSet/man/@PKGNAME at .Rd
--rw-r--r-- root/root 6600 2011-08-04 00:31 ./usr/lib/R/site-library/Biobase/INDEX
-drwxr-xr-x root/root 0 2011-08-04 00:31 ./usr/lib/R/site-library/Biobase/help/
--rw-r--r-- root/root 3321 2011-08-04 00:31 ./usr/lib/R/site-library/Biobase/help/aliases.rds
--rw-r--r-- root/root 242376 2011-08-04 00:31 ./usr/lib/R/site-library/Biobase/help/Biobase.rdb
--rw-r--r-- root/root 853 2011-08-04 00:31 ./usr/lib/R/site-library/Biobase/help/paths.rds
--rw-r--r-- root/root 14396 2011-08-04 00:31 ./usr/lib/R/site-library/Biobase/help/AnIndex
--rw-r--r-- root/root 1998 2011-08-04 00:31 ./usr/lib/R/site-library/Biobase/help/Biobase.rdx
--rw-r--r-- root/root 650 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/CITATION
--rw-r--r-- root/root 516 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/testClass.R
-drwxr-xr-x root/root 0 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/R/
--rw-r--r-- root/root 384 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/R/Biobase
--rw-r--r-- root/root 363978 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/R/Biobase.rdb
--rw-r--r-- root/root 8703 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/R/Biobase.rdx
-drwxr-xr-x root/root 0 2011-08-04 00:31 ./usr/lib/R/site-library/Biobase/libs/
--rw-r--r-- root/root 25868 2011-08-04 00:31 ./usr/lib/R/site-library/Biobase/libs/Biobase.so
-drwxr-xr-x root/root 0 2011-08-04 00:31 ./usr/lib/R/site-library/Biobase/doc/
--rw-r--r-- root/root 18067 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/doc/ExpressionSetIntroduction.Rnw
--rw-r--r-- root/root 5030 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/doc/Qviews.Rnw
--rw-r--r-- root/root 220 2011-08-04 00:31 ./usr/lib/R/site-library/Biobase/doc/Bioconductor.R
--rw-r--r-- root/root 110288 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/doc/esApply.pdf
--rw-r--r-- root/root 8004 2011-08-04 00:31 ./usr/lib/R/site-library/Biobase/doc/BiobaseDevelopment.R
--rw-r--r-- root/root 3048 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/doc/HowTo.Rnw
--rw-r--r-- root/root 267601 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/doc/BiobaseDevelopment.pdf
--rw-r--r-- root/root 3727 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/doc/esApply.Rnw
--rw-r--r-- root/root 6656 2011-08-04 00:31 ./usr/lib/R/site-library/Biobase/doc/ExpressionSetIntroduction.R
--rw-r--r-- root/root 3067 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/doc/Bioconductor.Rnw
--rw-r--r-- root/root 79071 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/doc/Qviews.pdf
--rw-r--r-- root/root 197875 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/doc/ExpressionSetIntroduction.pdf
--rw-r--r-- root/root 60322 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/doc/HowTo.pdf
--rw-r--r-- root/root 76653 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/doc/Bioconductor.pdf
-drwxr-xr-x root/root 0 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/doc/legacy/
--rw-r--r-- root/root 13630 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/doc/legacy/Biobase.Rnw
--rw-r--r-- root/root 206 2011-08-04 00:31 ./usr/lib/R/site-library/Biobase/doc/HowTo.R
--rw-r--r-- root/root 28377 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/doc/BiobaseDevelopment.Rnw
--rw-r--r-- root/root 1426 2011-08-04 00:31 ./usr/lib/R/site-library/Biobase/doc/index.html
--rw-r--r-- root/root 3987 2011-08-04 00:31 ./usr/lib/R/site-library/Biobase/doc/Qviews.R
--rw-r--r-- root/root 1591 2011-08-04 00:31 ./usr/lib/R/site-library/Biobase/doc/esApply.R
--rw-r--r-- root/root 3988 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/NEWS
-drwxr-xr-x root/root 0 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/scripts/
--rw-r--r-- root/root 1213 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/scripts/getBioCHelp
--rw-r--r-- root/root 1122 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/scripts/getBioCPkgNames.R
--rw-r--r-- root/root 6808 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/scripts/query.packages.R
--rw-r--r-- root/root 5365 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/scripts/getBioC.R
--rw-r--r-- root/root 774 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/scripts/esetTesting.R
--rw-r--r-- root/root 2008 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/scripts/makeExpressionSetPackage.R
-drwxr-xr-x root/root 0 2011-08-04 00:31 ./usr/lib/R/site-library/Biobase/html/
--rw-r--r-- root/root 51239 2011-08-04 00:31 ./usr/lib/R/site-library/Biobase/html/00Index.html
--rw-r--r-- root/root 1179 2011-08-04 00:31 ./usr/lib/R/site-library/Biobase/html/R.css
-drwxr-xr-x root/root 0 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/UnitTests/
--rw-r--r-- root/root 580 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/UnitTests/SnpSet_test.R
--rw-r--r-- root/root 8317 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/UnitTests/NChannelSet_test.R
--rw-r--r-- root/root 20153 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/UnitTests/EsetSubclasses_test.R
--rw-r--r-- root/root 1257 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/UnitTests/utilities.R
--rw-r--r-- root/root 477 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/UnitTests/runalltests.R
--rw-r--r-- root/root 1515 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/UnitTests/matrix_test.R
--rw-r--r-- root/root 6194 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/UnitTests/ExpressionSet_test.R
--rw-r--r-- root/root 180 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/UnitTests/checkClass_test.R
--rw-r--r-- root/root 10497 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/UnitTests/AnnotatedDataFrame_test.R
--rw-r--r-- root/root 2040 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/UnitTests/unsaveSetSlot_test.R
--rw-r--r-- root/root 2096 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/UnitTests/esApply_test.R
--rw-r--r-- root/root 951 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/UnitTests/cache_test.R
--rw-r--r-- root/root 403 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/UnitTests/copyEnv_test.R
--rw-r--r-- root/root 629 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/UnitTests/DataClasses_test.R
--rw-r--r-- root/root 8167 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/UnitTests/UpdateObject_test.R
--rw-r--r-- root/root 2035 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/UnitTests/AssayData_test.R
--rw-r--r-- root/root 1907 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/UnitTests/subListExtract_test.R
--rw-r--r-- root/root 286 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/UnitTests/Makefile
-drwxr-xr-x root/root 0 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/
-drwxr-xr-x root/root 0 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/
--rw-r--r-- root/root 231 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/aggregator.Rda
--rw-r--r-- root/root 62219 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/sample.exprSet.1.rda
--rw-r--r-- root/root 802 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/NChannelSet.Rda
--rw-r--r-- root/root 105 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/Versions.Rda
--rw-r--r-- root/root 25005 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/sample.eSet.rda
--rw-r--r-- root/root 1166 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/MultiSet.Rda
--rw-r--r-- root/root 143 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/Versioned.Rda
--rw-r--r-- root/root 5537 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/ExpressionSet.Rda
--rw-r--r-- root/root 183 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/VersionedBiobase.Rda
--rw-r--r-- root/root 524 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/SWPD.rda
--rw-r--r-- root/root 167662 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/golubMergeSub.rda
--rw-r--r-- root/root 146 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/container.Rda
--rw-r--r-- root/root 62201 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/eset.rda
--rw-r--r-- root/root 1016 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/AnnotatedDataFrame.Rda
--rw-r--r-- root/root 4704 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/exprSet.Rda
--rw-r--r-- root/root 795 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/MIAME.Rda
--rw-r--r-- root/root 1235 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/SnpSet.Rda
--rw-r--r-- root/root 113 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/ScalarCharacter.Rda
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+-rw-r--r-- root/root 62201 2011-11-02 07:27 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/eset.rda
+-rw-r--r-- root/root 76485 2011-11-02 07:27 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/bbsym.rda
+-rw-r--r-- root/root 1235 2011-11-02 07:27 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/SnpSet.Rda
+-rw-r--r-- root/root 1166 2011-11-02 07:27 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/MultiSet.Rda
+-rw-r--r-- root/root 1016 2011-11-02 07:27 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/AnnotatedDataFrame.Rda
+-rw-r--r-- root/root 92336 2011-11-02 07:27 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/sample.exprSet.rda
+-rw-r--r-- root/root 167662 2011-11-02 07:27 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/golubMergeSub.rda
+-rw-r--r-- root/root 95238 2011-11-02 07:27 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/swrep.rda
+-rw-r--r-- root/root 146 2011-11-02 07:27 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/container.Rda
+-rw-r--r-- root/root 795 2011-11-02 07:27 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/MIAME.Rda
+-rw-r--r-- root/root 113 2011-11-02 07:27 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/ScalarCharacter.Rda
+-rw-r--r-- root/root 951 2011-11-02 07:27 ./usr/lib/R/site-library/Biobase/UnitTests/cache_test.R
+-rw-r--r-- root/root 477 2011-11-02 07:27 ./usr/lib/R/site-library/Biobase/UnitTests/runalltests.R
+-rw-r--r-- root/root 580 2011-11-02 07:27 ./usr/lib/R/site-library/Biobase/UnitTests/SnpSet_test.R
+-rw-r--r-- root/root 8317 2011-11-02 07:27 ./usr/lib/R/site-library/Biobase/UnitTests/NChannelSet_test.R
+-rw-r--r-- root/root 6194 2011-11-02 07:27 ./usr/lib/R/site-library/Biobase/UnitTests/ExpressionSet_test.R
+drwxr-xr-x root/root 0 2011-11-02 07:27 ./usr/lib/R/site-library/Biobase/Code/
+drwxr-xr-x root/root 0 2011-11-02 07:27 ./usr/lib/R/site-library/Biobase/Code/R/
+-rw-r--r-- root/root 91 2011-11-02 07:27 ./usr/lib/R/site-library/Biobase/Code/R/get at PKGNAME@.R
+-rw-r--r-- root/root 201 2011-11-02 07:27 ./usr/lib/R/site-library/Biobase/Code/DESCRIPTION
+drwxr-xr-x root/root 0 2011-11-02 07:27 ./usr/lib/R/site-library/Biobase/Code/man/
+-rw-r--r-- root/root 487 2011-11-02 07:27 ./usr/lib/R/site-library/Biobase/Code/man/@PKGNAME at .Rd
+-rw-r--r-- root/root 350 2011-11-02 07:27 ./usr/lib/R/site-library/Biobase/Code/man/get at PKGNAME@.Rd
+drwxr-xr-x root/root 0 2011-11-02 07:27 ./usr/lib/R/site-library/Biobase/data/
+-rw-r--r-- root/root 73240 2011-11-02 07:27 ./usr/lib/R/site-library/Biobase/data/sample.ExpressionSet.rda
+-rw-r--r-- root/root 2032 2011-11-02 07:27 ./usr/lib/R/site-library/Biobase/data/reporter.rda
+-rw-r--r-- root/root 501 2011-11-02 07:27 ./usr/lib/R/site-library/Biobase/data/geneCov.R
+-rw-r--r-- root/root 18025 2011-11-02 07:27 ./usr/lib/R/site-library/Biobase/data/seD.rda
+-rw-r--r-- root/root 19920 2011-11-02 07:27 ./usr/lib/R/site-library/Biobase/data/sample.MultiSet.rda
+-rw-r--r-- root/root 115 2011-11-02 07:27 ./usr/lib/R/site-library/Biobase/data/sample.exprSet.R
+-rw-r--r-- root/root 125627 2011-11-02 07:27 ./usr/lib/R/site-library/Biobase/data/geneData.R
+-rw-r--r-- root/root 1556 2011-11-02 07:27 ./usr/lib/R/site-library/Biobase/data/aaMap.R
+-rw-r--r-- root/root 267752 2011-11-02 07:27 ./usr/lib/R/site-library/Biobase/data/SW.rda
+-rw-r--r-- root/root 435 2011-11-02 07:27 ./usr/lib/R/site-library/Biobase/data/geneCovariate.rda
+-rw-r--r-- root/root 107 2011-11-02 07:27 ./usr/lib/R/site-library/Biobase/data/sample.eSet.R
+-rw-r--r-- root/root 117 2011-11-02 07:27 ./usr/lib/R/site-library/Biobase/data/sample.exprSet.1.R
+-rw-r--r-- root/root 516 2011-11-02 07:27 ./usr/lib/R/site-library/Biobase/testClass.R
+-rw-r--r-- root/root 3988 2011-11-02 07:26 ./usr/lib/R/site-library/Biobase/NEWS
+-rw-r--r-- root/root 1264 2011-11-02 07:26 ./usr/lib/R/site-library/Biobase/DESCRIPTION
+drwxr-xr-x root/root 0 2011-11-02 07:28 ./usr/lib/R/site-library/Biobase/Meta/
+-rw-r--r-- root/root 1445 2011-11-02 07:28 ./usr/lib/R/site-library/Biobase/Meta/nsInfo.rds
+-rw-r--r-- root/root 475 2011-11-02 07:28 ./usr/lib/R/site-library/Biobase/Meta/vignette.rds
+-rw-r--r-- root/root 3554 2011-11-02 07:27 ./usr/lib/R/site-library/Biobase/Meta/links.rds
+-rw-r--r-- root/root 5810 2011-11-02 07:27 ./usr/lib/R/site-library/Biobase/Meta/hsearch.rds
+-rw-r--r-- root/root 1001 2011-11-02 07:26 ./usr/lib/R/site-library/Biobase/Meta/package.rds
+-rw-r--r-- root/root 323 2011-11-02 07:28 ./usr/lib/R/site-library/Biobase/Meta/data.rds
+-rw-r--r-- root/root 5798 2011-11-02 07:27 ./usr/lib/R/site-library/Biobase/Meta/Rd.rds
+drwxr-xr-x root/root 0 2011-11-02 07:27 ./usr/lib/R/site-library/Biobase/extdata/
+-rw-r--r-- root/root 715 2011-11-02 07:27 ./usr/lib/R/site-library/Biobase/extdata/pData.txt
+-rw-r--r-- root/root 109039 2011-11-02 07:27 ./usr/lib/R/site-library/Biobase/extdata/exprsData.txt
+drwxr-xr-x root/root 0 2011-11-02 07:28 ./usr/lib/R/site-library/Biobase/libs/
+-rw-r--r-- root/root 25868 2011-11-02 07:28 ./usr/lib/R/site-library/Biobase/libs/Biobase.so
+drwxr-xr-x root/root 0 2011-11-02 07:27 ./usr/lib/R/site-library/Biobase/ExpressionSet/
+-rw-r--r-- root/root 212 2011-11-02 07:27 ./usr/lib/R/site-library/Biobase/ExpressionSet/DESCRIPTION
+drwxr-xr-x root/root 0 2011-11-02 07:27 ./usr/lib/R/site-library/Biobase/ExpressionSet/man/
+-rw-r--r-- root/root 180 2011-11-02 07:27 ./usr/lib/R/site-library/Biobase/ExpressionSet/man/@PKGNAME at .Rd
+drwxr-xr-x root/root 0 2011-11-02 07:27 ./usr/lib/R/site-library/Biobase/scripts/
+-rw-r--r-- root/root 2008 2011-11-02 07:27 ./usr/lib/R/site-library/Biobase/scripts/makeExpressionSetPackage.R
+-rw-r--r-- root/root 1213 2011-11-02 07:27 ./usr/lib/R/site-library/Biobase/scripts/getBioCHelp
+-rw-r--r-- root/root 6808 2011-11-02 07:27 ./usr/lib/R/site-library/Biobase/scripts/query.packages.R
+-rw-r--r-- root/root 5365 2011-11-02 07:27 ./usr/lib/R/site-library/Biobase/scripts/getBioC.R
+-rw-r--r-- root/root 1122 2011-11-02 07:27 ./usr/lib/R/site-library/Biobase/scripts/getBioCPkgNames.R
+-rw-r--r-- root/root 774 2011-11-02 07:27 ./usr/lib/R/site-library/Biobase/scripts/esetTesting.R
+-rw-r--r-- root/root 3234 2011-11-02 07:26 ./usr/lib/R/site-library/Biobase/NAMESPACE
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -962,9 +998,32 @@ drwxr-xr-x root/root 0 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase
Built successfully
────────────────────────────────────────────────────────────────────────────────
-Purging /var/lib/schroot/mount/sid-mipsel-sbuild-4967957a-d166-4db3-bea7-f133e9169010/build/buildd-r-bioc-biobase_2.12.2-1-mipsel-VAOhJw
-Not removing build depends: cloned chroot in use
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Post Build │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+Purging /var/lib/schroot/mount/sid-mipsel-sbuild-2714e5a6-fcfe-40d5-9114-951eeb2038f1/build/buildd-r-bioc-biobase_2.14.0-1-mipsel-e8fesc
+Not cleaning session: cloned chroot in use
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Summary │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+Architecture: mipsel
+Build-Space: 9144
+Build-Time: 158
+Distribution: sid
+Install-Time: 246
+Job: r-bioc-biobase_2.14.0-1
+Package: r-bioc-biobase
+Package-Time: 520
+Source-Version: 2.14.0-1
+Space: 9144
+Status: successful
+Version: 2.14.0-1
────────────────────────────────────────────────────────────────────────────────
-Finished at 20110804-0032
-Build needed 00:08:31, 10096k disc space
+Finished at 20111102-0728
+Build needed 00:08:40, 9144k disc space
+Signature with key 'F6EC30D8' requested:
diff --git a/powerpc.log b/powerpc.log
index d085410..cb7a033 100644
--- a/powerpc.log
+++ b/powerpc.log
@@ -1,29 +1,29 @@
-From buildd at praetorius.debian.org Thu Aug 04 00:28:38 2011
+From buildd at praetorius.debian.org Wed Nov 02 07:17:55 2011
Return-path: <buildd at praetorius.debian.org>
-Received: from merikanto.debian.org ([2001:858:2:2:216:35ff:fec4:a49a])
+Received: from kokkonen.debian.org ([2001:41b8:202:deb:1a1a:0:52c3:4b61])
from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
- CN=merikanto.debian.org,
- EMAIL=hostmaster at merikanto.debian.org (verified)
+ CN=kokkonen.debian.org,
+ EMAIL=hostmaster at kokkonen.debian.org (verified)
by grieg.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
(Exim 4.72) (envelope-from <buildd at praetorius.debian.org>)
- id 1Qolni-0004U6-6S
- for logs at buildd.debian.org; Thu, 04 Aug 2011 00:28:38 +0000
+ id 1RLV58-000397-TY
+ for logs at buildd.debian.org; Wed, 02 Nov 2011 07:17:55 +0000
Received: from [2001:6b0:e:2a18:214:5eff:fe97:268a]
(helo=praetorius.debian.org)
from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
CN=praetorius.debian.org,
EMAIL=hostmaster at praetorius.debian.org (verified)
- by merikanto.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
+ by kokkonen.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
(Exim 4.72) (envelope-from <buildd at praetorius.debian.org>)
- id 1Qolng-0000Jk-PA; Thu, 04 Aug 2011 00:28:37 +0000
+ id 1RLV57-0008QA-Ul; Wed, 02 Nov 2011 07:17:54 +0000
Received: from buildd by praetorius.debian.org with local (Exim 4.72)
(envelope-from <buildd at praetorius.debian.org>)
- id 1Qolnf-0002jl-T1; Thu, 04 Aug 2011 00:28:35 +0000
-Date: Thu, 04 Aug 2011 00:28:35 +0000
-Message-Id: <E1Qolnf-0002jl-T1 at praetorius.debian.org>
+ id 1RLV57-0000y7-8f; Wed, 02 Nov 2011 07:17:53 +0000
+Date: Wed, 02 Nov 2011 07:17:53 +0000
+Message-Id: <E1RLV57-0000y7-8f at praetorius.debian.org>
From: buildd on praetorius <buildd at praetorius.debian.org>
To: wouter at debian.org,logs at buildd.debian.org
-Subject: Log for successful build of r-bioc-biobase_2.12.2-1 on powerpc
+Subject: Log for successful build of r-bioc-biobase_2.14.0-1 on powerpc
(dist=sid)
Content-Type: text/plain; charset=UTF-8
Content-Transfer-Encoding: 8bit
@@ -32,38 +32,38 @@ Delivered-To: logs at buildd.debian.org
sbuild (Debian sbuild) 0.61.0 (23 Feb 2011) on praetorius.debian.org
╔══════════════════════════════════════════════════════════════════════════════╗
-║ r-bioc-biobase 2.12.2-1 (powerpc) 04 Aug 2011 00:24 ║
+║ r-bioc-biobase 2.14.0-1 (powerpc) 02 Nov 2011 07:14 ║
╚══════════════════════════════════════════════════════════════════════════════╝
Package: r-bioc-biobase
-Version: 2.12.2-1
-Source Version: 2.12.2-1
+Version: 2.14.0-1
+Source Version: 2.14.0-1
Architecture: powerpc
Get:1 http://ftp.se.debian.org unstable InRelease [146 kB]
-Get:2 http://ftp.se.debian.org unstable/main Sources [5403 kB]
+Get:2 http://ftp.se.debian.org unstable/main Sources [5884 kB]
Get:3 http://incoming.debian.org unstable InRelease [146 kB]
-Get:4 http://ftp.se.debian.org unstable/contrib Sources [51.3 kB]
-Get:5 http://ftp.se.debian.org unstable/non-free Sources [96.3 kB]
-Get:6 http://ftp.se.debian.org unstable/main powerpc Packages [7469 kB]
-Get:7 http://ftp.se.debian.org unstable/contrib powerpc Packages [53.3 kB]
+Get:4 http://ftp.se.debian.org unstable/contrib Sources [56.9 kB]
+Get:5 http://ftp.se.debian.org unstable/non-free Sources [104 kB]
+Get:6 http://ftp.se.debian.org unstable/main powerpc Packages [7705 kB]
+Ign http://incoming.debian.org InRelease
+Get:7 http://ftp.se.debian.org unstable/contrib powerpc Packages [55.5 kB]
Ign http://ftp.se.debian.org unstable/contrib TranslationIndex
Get:8 http://ftp.se.debian.org unstable/main TranslationIndex [2045 B]
Ign http://ftp.se.debian.org unstable/contrib Translation-en
-Ign http://incoming.debian.org InRelease
Get:9 http://incoming.debian.org Release.gpg [836 B]
-Get:10 http://incoming.debian.org unstable/main Sources [5403 kB]
-Get:11 http://incoming.debian.org unstable/contrib Sources [51.3 kB]
-Get:12 http://incoming.debian.org unstable/non-free Sources [96.3 kB]
-Get:13 http://incoming.debian.org unstable/main powerpc Packages [7469 kB]
-Get:14 http://incoming.debian.org unstable/contrib powerpc Packages [53.3 kB]
+Get:10 http://incoming.debian.org unstable/main Sources [5884 kB]
+Get:11 http://incoming.debian.org unstable/contrib Sources [56.9 kB]
+Get:12 http://incoming.debian.org unstable/non-free Sources [104 kB]
+Get:13 http://incoming.debian.org unstable/main powerpc Packages [7705 kB]
+Get:14 http://incoming.debian.org unstable/contrib powerpc Packages [55.5 kB]
Ign http://incoming.debian.org unstable/contrib TranslationIndex
Get:15 http://incoming.debian.org unstable/main TranslationIndex [2045 B]
Get:16 http://incoming.debian.org Release [1604 B]
-Get:17 http://incoming.debian.org Sources [30.7 kB]
-Get:18 http://incoming.debian.org Packages [218 kB]
+Get:17 http://incoming.debian.org Sources [51.4 kB]
+Get:18 http://incoming.debian.org Packages [354 kB]
Ign http://incoming.debian.org unstable/contrib Translation-en
Ign http://incoming.debian.org Translation-en
-Fetched 26.7 MB in 16s (1663 kB/s)
+Fetched 28.3 MB in 13s (2053 kB/s)
Reading package lists...
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -84,11 +84,11 @@ Building dependency tree...
Reading state information...
NOTICE: 'r-bioc-biobase' packaging is maintained in the 'Git' version control system at:
git://git.debian.org/git/debian-med/r-bioc-biobase.git
-Need to get 2229 kB of source archives.
-Get:1 http://incoming.debian.org/buildd-unstable/ r-bioc-biobase 2.12.2-1 (dsc) [1944 B]
-Get:2 http://incoming.debian.org/buildd-unstable/ r-bioc-biobase 2.12.2-1 (tar) [2222 kB]
-Get:3 http://incoming.debian.org/buildd-unstable/ r-bioc-biobase 2.12.2-1 (diff) [5417 B]
-Fetched 2229 kB in 2s (1025 kB/s)
+Need to get 1934 kB of source archives.
+Get:1 http://incoming.debian.org/buildd-unstable/ r-bioc-biobase 2.14.0-1 (dsc) [2004 B]
+Get:2 http://incoming.debian.org/buildd-unstable/ r-bioc-biobase 2.14.0-1 (tar) [1926 kB]
+Get:3 http://incoming.debian.org/buildd-unstable/ r-bioc-biobase 2.14.0-1 (diff) [5645 B]
+Fetched 1934 kB in 2s (943 kB/s)
Download complete and in download only mode
Check arch
@@ -102,87 +102,85 @@ Check arch
Build-Depends: build-essential, fakeroot
Checking for already installed dependencies...
build-essential: already installed (11.5)
-fakeroot: already installed (1.16-1)
+fakeroot: already installed (1.18.1-1)
Checking for dependency conflicts...
Installing positive dependencies:
Reading package lists...
Building dependency tree...
Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 30 not upgraded.
+0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
Removing negative dependencies:
Reading package lists...
Building dependency tree...
Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 30 not upgraded.
+0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
Checking correctness of dependencies...
┌──────────────────────────────────────────────────────────────────────────────┐
│ Install r-bioc-biobase build dependencies (internal resolver) │
└──────────────────────────────────────────────────────────────────────────────┘
-Build-Depends: base-files, base-passwd, bash, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, ncurses-base, ncurses-bin, perl-base, sed, login, sysvinit-utils, sysvinit, tar, bsdutils, mount, util-linux, libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), cdbs, debhelper (>= 8), r-base-dev
+Build-Depends: base-files, base-passwd, bash, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, ncurses-base, ncurses-bin, perl-base, sed, login, sysvinit-utils, sysvinit, tar, bsdutils, mount, util-linux, libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), cdbs, debhelper (>= 8), r-base-dev (>= 2.10)
Checking for already installed dependencies...
-base-files: already installed (6.4)
+base-files: already installed (6.5)
base-passwd: already installed (3.5.23)
bash: already installed (4.1-3)
-coreutils: already installed (8.5-1)
-dash: already installed (0.5.5.1-7.4)
-debianutils: already installed (4.0.2)
-diffutils: already installed (1:3.0-1)
-dpkg: already installed (1.16.0.3)
-e2fsprogs: already installed (1.42~WIP-2011-07-02-1)
+coreutils: already installed (8.13-3)
+dash: already installed (0.5.7-2)
+debianutils: already installed (4.0.4)
+diffutils: already installed (1:3.2-1)
+dpkg: already installed (1.16.1.1)
+e2fsprogs: already installed (1.42~WIP-2011-10-16-1)
findutils: already installed (4.4.2-1+b1)
-grep: already installed (2.9-1)
+grep: already installed (2.9-2)
gzip: already installed (1.4-1)
hostname: already installed (3.06)
-ncurses-base: already installed (5.9-1)
-ncurses-bin: already installed (5.9-1)
-perl-base: already installed (5.12.4-1)
+ncurses-base: already installed (5.9-2)
+ncurses-bin: already installed (5.9-2)
+perl-base: already installed (5.12.4-6)
sed: already installed (4.2.1-9)
login: already installed (1:4.1.4.2+svn3283-3)
-sysvinit-utils: already installed (2.88dsf-13.11)
-sysvinit: already installed (2.88dsf-13.11)
-tar: already installed (1.25-3)
-bsdutils: already installed (1:2.19.1-4)
-mount: already installed (2.19.1-4)
-util-linux: already installed (2.19.1-4)
-libc6-dev: already installed (2.13-10)
-gcc: already installed (4:4.6.1-2 >= 4:4.4.3 is satisfied)
-g++: already installed (4:4.6.1-2 >= 4:4.4.3 is satisfied)
+sysvinit-utils: already installed (2.88dsf-13.12)
+sysvinit: already installed (2.88dsf-13.12)
+tar: already installed (1.26-2)
+bsdutils: already installed (1:2.19.1-5)
+mount: already installed (2.19.1-5)
+util-linux: already installed (2.19.1-5)
+libc6-dev: already installed (2.13-21)
+gcc: already installed (4:4.6.1-3 >= 4:4.4.3 is satisfied)
+g++: already installed (4:4.6.1-3 >= 4:4.4.3 is satisfied)
make: already installed (3.81-8.1)
-dpkg-dev: already installed (1.16.0.3 >= 1.13.5 is satisfied)
+dpkg-dev: already installed (1.16.1.1 >= 1.13.5 is satisfied)
cdbs: missing
debhelper: missing
-Using default version 8.9.3
+Using default version 8.9.8
r-base-dev: missing
+Using default version 2.14.0-1
Checking for dependency conflicts...
Installing positive dependencies: cdbs debhelper r-base-dev
Reading package lists...
Building dependency tree...
Reading state information...
The following extra packages will be installed:
- bsdmainutils cpp-4.6 dpatch file fontconfig fontconfig-config g++-4.6
- gcc-4.6 gcc-4.6-base gettext gettext-base gfortran gfortran-4.6 groff-base
- html2text intltool-debian libblas-dev libblas3gf libbz2-dev libcairo2
- libcroco3 libdatrie1 libexpat1 libfontconfig1 libfreetype6 libgcc1
- libgfortran3 libglib2.0-0 libgomp1 libice6 libjpeg62 libjpeg8 libjpeg8-dev
- liblapack-dev liblapack3gf libmagic1 libncurses5-dev libpango1.0-0
- libpaper-utils libpaper1 libpcre3 libpcre3-dev libpcrecpp0 libpipeline1
- libpixman-1-0 libpng12-0 libpng12-dev libreadline-dev libreadline6-dev
- libsm6 libstdc++6 libstdc++6-4.6-dev libthai-data libthai0 libtiff4
+ bsdmainutils dpatch file fontconfig fontconfig-config gettext gettext-base
+ gfortran gfortran-4.6 groff-base html2text intltool-debian libblas-dev
+ libblas3gf libbz2-dev libcairo2 libcroco3 libdatrie1 libexpat1
+ libfontconfig1 libfreetype6 libgfortran3 libglib2.0-0 libice6 libjpeg8
+ libjpeg8-dev liblapack-dev liblapack3gf libmagic1 libncurses5-dev
+ libpango1.0-0 libpaper-utils libpaper1 libpcre3 libpcre3-dev libpcrecpp0
+ libpipeline1 libpixman-1-0 libpng12-0 libpng12-dev libreadline-dev
+ libreadline6-dev libsm6 libthai-data libthai0 libtiff4 libtinfo-dev
libunistring0 libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0
libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxrender1 libxss1 libxt6 man-db
po-debconf r-base-core tcl8.5 tk8.5 ttf-dejavu-core ucf unzip x11-common
xdg-utils zip zlib1g-dev
Suggested packages:
- wamerican wordlist whois vacation devscripts gcc-4.6-locales dh-make curl
- defoma g++-4.6-multilib gcc-4.6-doc libstdc++6-4.6-dbg gcc-4.6-multilib
- libmudflap0-4.6-dev libgcc1-dbg libgomp1-dbg libquadmath-dbg libmudflap0-dbg
- binutils-gold gettext-doc gfortran-multilib gfortran-doc
- gfortran-4.6-multilib gfortran-4.6-doc libgfortran3-dbg groff ncurses-doc
- ttf-baekmuk ttf-arphic-gbsn00lp ttf-arphic-bsmi00lp ttf-arphic-gkai00mp
- ttf-arphic-bkai00mp libstdc++6-4.6-doc less www-browser libmail-box-perl
- r-doc-info r-doc-pdf r-mathlib r-base-html tclreadline gvfs-bin
+ wamerican wordlist whois vacation devscripts dh-make curl defoma gettext-doc
+ gfortran-multilib gfortran-doc gfortran-4.6-multilib gfortran-4.6-doc
+ libgfortran3-dbg groff ncurses-doc ttf-baekmuk ttf-arphic-gbsn00lp
+ ttf-arphic-bsmi00lp ttf-arphic-gkai00mp ttf-arphic-bkai00mp less www-browser
+ libmail-box-perl r-doc-info r-doc-pdf r-mathlib r-base-html tclreadline
+ gvfs-bin
Recommended packages:
autotools-dev patchutils autopoint libglib2.0-data shared-mime-info
x-ttcidfont-conf xml-core libmail-sendmail-perl r-recommended r-doc-html
@@ -191,296 +189,265 @@ The following NEW packages will be installed:
bsdmainutils cdbs debhelper dpatch file fontconfig fontconfig-config gettext
gettext-base gfortran gfortran-4.6 groff-base html2text intltool-debian
libblas-dev libblas3gf libbz2-dev libcairo2 libcroco3 libdatrie1 libexpat1
- libfontconfig1 libfreetype6 libgfortran3 libglib2.0-0 libice6 libjpeg62
- libjpeg8 libjpeg8-dev liblapack-dev liblapack3gf libmagic1 libncurses5-dev
+ libfontconfig1 libfreetype6 libgfortran3 libglib2.0-0 libice6 libjpeg8
+ libjpeg8-dev liblapack-dev liblapack3gf libmagic1 libncurses5-dev
libpango1.0-0 libpaper-utils libpaper1 libpcre3 libpcre3-dev libpcrecpp0
libpipeline1 libpixman-1-0 libpng12-0 libpng12-dev libreadline-dev
- libreadline6-dev libsm6 libthai-data libthai0 libtiff4 libunistring0
- libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6
- libxext6 libxft2 libxml2 libxrender1 libxss1 libxt6 man-db po-debconf
- r-base-core r-base-dev tcl8.5 tk8.5 ttf-dejavu-core ucf unzip x11-common
- xdg-utils zip zlib1g-dev
-The following packages will be upgraded:
- cpp-4.6 g++-4.6 gcc-4.6 gcc-4.6-base libgcc1 libgomp1 libstdc++6
- libstdc++6-4.6-dev
-8 upgraded, 76 newly installed, 0 to remove and 22 not upgraded.
-Need to get 69.5 MB of archives.
-After this operation, 122 MB of additional disk space will be used.
-Get:1 http://ftp.se.debian.org/debian/ unstable/main libgomp1 powerpc 4.6.1-5 [26.3 kB]
-Get:2 http://ftp.se.debian.org/debian/ unstable/main gcc-4.6-base powerpc 4.6.1-5 [134 kB]
-Get:3 http://ftp.se.debian.org/debian/ unstable/main libgcc1 powerpc 1:4.6.1-5 [43.1 kB]
-Get:4 http://ftp.se.debian.org/debian/ unstable/main cpp-4.6 powerpc 4.6.1-5 [4579 kB]
-Get:5 http://ftp.se.debian.org/debian/ unstable/main libstdc++6-4.6-dev powerpc 4.6.1-5 [1691 kB]
-Get:6 http://ftp.se.debian.org/debian/ unstable/main g++-4.6 powerpc 4.6.1-5 [6641 kB]
-Get:7 http://ftp.se.debian.org/debian/ unstable/main gcc-4.6 powerpc 4.6.1-5 [4964 kB]
-Get:8 http://ftp.se.debian.org/debian/ unstable/main libstdc++6 powerpc 4.6.1-5 [378 kB]
-Get:9 http://ftp.se.debian.org/debian/ unstable/main libpipeline1 powerpc 1.2.0-3 [37.2 kB]
-Get:10 http://ftp.se.debian.org/debian/ unstable/main libdatrie1 powerpc 0.2.4-3 [26.5 kB]
-Get:11 http://ftp.se.debian.org/debian/ unstable/main libexpat1 powerpc 2.0.1-7 [139 kB]
-Get:12 http://ftp.se.debian.org/debian/ unstable/main libfreetype6 powerpc 2.4.4-2 [395 kB]
-Get:13 http://ftp.se.debian.org/debian/ unstable/main ucf all 3.0025+nmu2 [70.6 kB]
-Get:14 http://ftp.se.debian.org/debian/ unstable/main ttf-dejavu-core all 2.33-1 [1550 kB]
-Get:15 http://ftp.se.debian.org/debian/ unstable/main fontconfig-config all 2.8.0-3 [221 kB]
-Get:16 http://ftp.se.debian.org/debian/ unstable/main libfontconfig1 powerpc 2.8.0-3 [280 kB]
-Get:17 http://ftp.se.debian.org/debian/ unstable/main libgfortran3 powerpc 4.6.1-5 [281 kB]
-Get:18 http://ftp.se.debian.org/debian/ unstable/main x11-common all 1:7.6+7 [275 kB]
-Get:19 http://ftp.se.debian.org/debian/ unstable/main libice6 powerpc 2:1.0.7-2 [53.0 kB]
-Get:20 http://ftp.se.debian.org/debian/ unstable/main libpixman-1-0 powerpc 0.22.2-1 [342 kB]
-Get:21 http://ftp.se.debian.org/debian/ unstable/main libpng12-0 powerpc 1.2.46-3 [184 kB]
-Get:22 http://ftp.se.debian.org/debian/ unstable/main libxau6 powerpc 1:1.0.6-3 [16.8 kB]
-Get:23 http://ftp.se.debian.org/debian/ unstable/main libxdmcp6 powerpc 1:1.1.0-3 [22.8 kB]
-Get:24 http://ftp.se.debian.org/debian/ unstable/main libxcb1 powerpc 1.7-3 [41.1 kB]
-Get:25 http://ftp.se.debian.org/debian/ unstable/main libx11-data all 2:1.4.4-1 [183 kB]
-Get:26 http://ftp.se.debian.org/debian/ unstable/main libx11-6 powerpc 2:1.4.4-1 [868 kB]
-Get:27 http://ftp.se.debian.org/debian/ unstable/main libxcb-render0 powerpc 1.7-3 [15.4 kB]
-Get:28 http://ftp.se.debian.org/debian/ unstable/main libxcb-shm0 powerpc 1.7-3 [9456 B]
-Get:29 http://ftp.se.debian.org/debian/ unstable/main libxrender1 powerpc 1:0.9.6-2 [30.7 kB]
-Get:30 http://ftp.se.debian.org/debian/ unstable/main libcairo2 powerpc 1.10.2-6.1 [937 kB]
-Get:31 http://ftp.se.debian.org/debian/ unstable/main libpcre3 powerpc 8.12-3 [258 kB]
-Get:32 http://ftp.se.debian.org/debian/ unstable/main libglib2.0-0 powerpc 2.28.6-1 [1611 kB]
-Get:33 http://ftp.se.debian.org/debian/ unstable/main libthai-data all 0.1.15-2 [201 kB]
-Get:34 http://ftp.se.debian.org/debian/ unstable/main libthai0 powerpc 0.1.15-2 [41.8 kB]
-Get:35 http://ftp.se.debian.org/debian/ unstable/main libxft2 powerpc 2.2.0-3 [57.6 kB]
-Get:36 http://ftp.se.debian.org/debian/ unstable/main fontconfig powerpc 2.8.0-3 [334 kB]
-Get:37 http://ftp.se.debian.org/debian/ unstable/main libpango1.0-0 powerpc 1.28.4-2 [427 kB]
-Get:38 http://ftp.se.debian.org/debian/ unstable/main libsm6 powerpc 2:1.2.0-2 [28.6 kB]
-Get:39 http://ftp.se.debian.org/debian/ unstable/main libxext6 powerpc 2:1.3.0-3 [49.3 kB]
-Get:40 http://ftp.se.debian.org/debian/ unstable/main libxt6 powerpc 1:1.1.1-2 [191 kB]
-Get:41 http://ftp.se.debian.org/debian/ unstable/main bsdmainutils powerpc 8.2.3 [207 kB]
-Get:42 http://ftp.se.debian.org/debian/ unstable/main groff-base powerpc 1.21-6 [1179 kB]
-Get:43 http://ftp.se.debian.org/debian/ unstable/main man-db powerpc 2.6.0.2-2 [1013 kB]
-Get:44 http://ftp.se.debian.org/debian/ unstable/main libmagic1 powerpc 5.04-5+b1 [240 kB]
-Get:45 http://ftp.se.debian.org/debian/ unstable/main file powerpc 5.04-5+b1 [49.9 kB]
-Get:46 http://ftp.se.debian.org/debian/ unstable/main gettext-base powerpc 0.18.1.1-3 [141 kB]
-Get:47 http://ftp.se.debian.org/debian/ unstable/main libxml2 powerpc 2.7.8.dfsg-4 [837 kB]
-Get:48 http://ftp.se.debian.org/debian/ unstable/main html2text powerpc 1.3.2a-15 [105 kB]
-Get:49 http://ftp.se.debian.org/debian/ unstable/main libcroco3 powerpc 0.6.2-1 [128 kB]
-Get:50 http://ftp.se.debian.org/debian/ unstable/main libunistring0 powerpc 0.9.3-4 [422 kB]
-Get:51 http://ftp.se.debian.org/debian/ unstable/main gettext powerpc 0.18.1.1-3 [2046 kB]
-Get:52 http://ftp.se.debian.org/debian/ unstable/main intltool-debian all 0.35.0+20060710.1 [30.8 kB]
-Get:53 http://ftp.se.debian.org/debian/ unstable/main po-debconf all 1.0.16+nmu1 [223 kB]
-Get:54 http://ftp.se.debian.org/debian/ unstable/main debhelper all 8.9.3 [561 kB]
-Get:55 http://ftp.se.debian.org/debian/ unstable/main cdbs all 0.4.96 [75.8 kB]
-Get:56 http://ftp.se.debian.org/debian/ unstable/main dpatch all 2.0.31 [92.3 kB]
-Get:57 http://ftp.se.debian.org/debian/ unstable/main gfortran-4.6 powerpc 4.6.1-5 [5260 kB]
-Get:58 http://ftp.se.debian.org/debian/ unstable/main gfortran powerpc 4:4.6.1-2 [1134 B]
-Get:59 http://ftp.se.debian.org/debian/ unstable/main libblas3gf powerpc 1.2-8 [195 kB]
-Get:60 http://ftp.se.debian.org/debian/ unstable/main libblas-dev powerpc 1.2-8 [215 kB]
-Get:61 http://ftp.se.debian.org/debian/ unstable/main libbz2-dev powerpc 1.0.5-6 [38.5 kB]
-Get:62 http://ftp.se.debian.org/debian/ unstable/main libjpeg62 powerpc 6b1-2 [90.6 kB]
-Get:63 http://ftp.se.debian.org/debian/ unstable/main libjpeg8 powerpc 8c-2 [129 kB]
-Get:64 http://ftp.se.debian.org/debian/ unstable/main libjpeg8-dev powerpc 8c-2 [234 kB]
-Get:65 http://ftp.se.debian.org/debian/ unstable/main liblapack3gf powerpc 3.3.0-4 [3908 kB]
-Get:66 http://ftp.se.debian.org/debian/ unstable/main liblapack-dev powerpc 3.3.0-4 [4189 kB]
-Get:67 http://ftp.se.debian.org/debian/ unstable/main libncurses5-dev powerpc 5.9-1 [489 kB]
-Get:68 http://ftp.se.debian.org/debian/ unstable/main libpaper1 powerpc 1.1.24+nmu1 [21.5 kB]
-Get:69 http://ftp.se.debian.org/debian/ unstable/main libpaper-utils powerpc 1.1.24+nmu1 [18.0 kB]
-Get:70 http://ftp.se.debian.org/debian/ unstable/main libpcrecpp0 powerpc 8.12-3 [114 kB]
-Get:71 http://ftp.se.debian.org/debian/ unstable/main libpcre3-dev powerpc 8.12-3 [315 kB]
-Get:72 http://ftp.se.debian.org/debian/ unstable/main zlib1g-dev powerpc 1:1.2.3.4.dfsg-3 [190 kB]
-Get:73 http://ftp.se.debian.org/debian/ unstable/main libpng12-dev powerpc 1.2.46-3 [265 kB]
-Get:74 http://ftp.se.debian.org/debian/ unstable/main libreadline6-dev powerpc 6.2-2 [258 kB]
-Get:75 http://ftp.se.debian.org/debian/ unstable/main libreadline-dev powerpc 6.2-2 [882 B]
-Get:76 http://ftp.se.debian.org/debian/ unstable/main libtiff4 powerpc 3.9.5-1 [200 kB]
-Get:77 http://ftp.se.debian.org/debian/ unstable/main libxss1 powerpc 1:1.2.1-1 [16.5 kB]
-Get:78 http://ftp.se.debian.org/debian/ unstable/main zip powerpc 3.0-4 [340 kB]
-Get:79 http://ftp.se.debian.org/debian/ unstable/main unzip powerpc 6.0-5 [188 kB]
-Get:80 http://ftp.se.debian.org/debian/ unstable/main xdg-utils all 1.1.0~rc1-2 [70.2 kB]
-Get:81 http://ftp.se.debian.org/debian/ unstable/main tcl8.5 powerpc 8.5.10-1 [1627 kB]
-Get:82 http://ftp.se.debian.org/debian/ unstable/main tk8.5 powerpc 8.5.10-1 [1166 kB]
-Get:83 http://ftp.se.debian.org/debian/ unstable/main r-base-core powerpc 2.13.1-1 [15.0 MB]
-Get:84 http://ftp.se.debian.org/debian/ unstable/main r-base-dev all 2.13.1-1 [3490 B]
+ libreadline6-dev libsm6 libthai-data libthai0 libtiff4 libtinfo-dev
+ libunistring0 libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0
+ libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxrender1 libxss1 libxt6 man-db
+ po-debconf r-base-core r-base-dev tcl8.5 tk8.5 ttf-dejavu-core ucf unzip
+ x11-common xdg-utils zip zlib1g-dev
+0 upgraded, 76 newly installed, 0 to remove and 0 not upgraded.
+Need to get 55.1 MB of archives.
+After this operation, 119 MB of additional disk space will be used.
+Get:1 http://ftp.se.debian.org/debian/ unstable/main libpipeline1 powerpc 1.2.0-4 [37.2 kB]
+Get:2 http://ftp.se.debian.org/debian/ unstable/main libpcre3 powerpc 8.12-4 [222 kB]
+Get:3 http://ftp.se.debian.org/debian/ unstable/main libglib2.0-0 powerpc 2.28.8-1 [1609 kB]
+Get:4 http://ftp.se.debian.org/debian/ unstable/main libxml2 powerpc 2.7.8.dfsg-5 [837 kB]
+Get:5 http://ftp.se.debian.org/debian/ unstable/main libcroco3 powerpc 0.6.2-2 [114 kB]
+Get:6 http://ftp.se.debian.org/debian/ unstable/main libdatrie1 powerpc 0.2.4-3 [26.5 kB]
+Get:7 http://ftp.se.debian.org/debian/ unstable/main libexpat1 powerpc 2.0.1-7.1 [138 kB]
+Get:8 http://ftp.se.debian.org/debian/ unstable/main libfreetype6 powerpc 2.4.7-2 [420 kB]
+Get:9 http://ftp.se.debian.org/debian/ unstable/main ucf all 3.0025+nmu2 [70.6 kB]
+Get:10 http://ftp.se.debian.org/debian/ unstable/main ttf-dejavu-core all 2.33-2 [1552 kB]
+Get:11 http://ftp.se.debian.org/debian/ unstable/main fontconfig-config all 2.8.0-3 [221 kB]
+Get:12 http://ftp.se.debian.org/debian/ unstable/main libfontconfig1 powerpc 2.8.0-3 [280 kB]
+Get:13 http://ftp.se.debian.org/debian/ unstable/main libgfortran3 powerpc 4.6.2-3 [281 kB]
+Get:14 http://ftp.se.debian.org/debian/ unstable/main x11-common all 1:7.6+9 [276 kB]
+Get:15 http://ftp.se.debian.org/debian/ unstable/main libice6 powerpc 2:1.0.7-2 [53.0 kB]
+Get:16 http://ftp.se.debian.org/debian/ unstable/main libpixman-1-0 powerpc 0.22.2-1 [342 kB]
+Get:17 http://ftp.se.debian.org/debian/ unstable/main libpng12-0 powerpc 1.2.46-3 [184 kB]
+Get:18 http://ftp.se.debian.org/debian/ unstable/main libxau6 powerpc 1:1.0.6-3 [16.8 kB]
+Get:19 http://ftp.se.debian.org/debian/ unstable/main libxdmcp6 powerpc 1:1.1.0-3 [22.8 kB]
+Get:20 http://ftp.se.debian.org/debian/ unstable/main libxcb1 powerpc 1.7-3 [41.1 kB]
+Get:21 http://ftp.se.debian.org/debian/ unstable/main libx11-data all 2:1.4.4-2 [183 kB]
+Get:22 http://ftp.se.debian.org/debian/ unstable/main libx11-6 powerpc 2:1.4.4-2 [868 kB]
+Get:23 http://ftp.se.debian.org/debian/ unstable/main libxcb-render0 powerpc 1.7-3 [15.4 kB]
+Get:24 http://ftp.se.debian.org/debian/ unstable/main libxcb-shm0 powerpc 1.7-3 [9456 B]
+Get:25 http://ftp.se.debian.org/debian/ unstable/main libxrender1 powerpc 1:0.9.6-2 [30.7 kB]
+Get:26 http://ftp.se.debian.org/debian/ unstable/main libcairo2 powerpc 1.10.2-6.1 [937 kB]
+Get:27 http://ftp.se.debian.org/debian/ unstable/main libthai-data all 0.1.15-2 [201 kB]
+Get:28 http://ftp.se.debian.org/debian/ unstable/main libthai0 powerpc 0.1.15-2 [41.8 kB]
+Get:29 http://ftp.se.debian.org/debian/ unstable/main libxft2 powerpc 2.2.0-3 [57.6 kB]
+Get:30 http://ftp.se.debian.org/debian/ unstable/main fontconfig powerpc 2.8.0-3 [334 kB]
+Get:31 http://ftp.se.debian.org/debian/ unstable/main libpango1.0-0 powerpc 1.29.4-2 [447 kB]
+Get:32 http://ftp.se.debian.org/debian/ unstable/main libpcrecpp0 powerpc 8.12-4 [113 kB]
+Get:33 http://ftp.se.debian.org/debian/ unstable/main libsm6 powerpc 2:1.2.0-2 [28.6 kB]
+Get:34 http://ftp.se.debian.org/debian/ unstable/main libjpeg8 powerpc 8c-2 [129 kB]
+Get:35 http://ftp.se.debian.org/debian/ unstable/main libtiff4 powerpc 3.9.5-2 [199 kB]
+Get:36 http://ftp.se.debian.org/debian/ unstable/main libunistring0 powerpc 0.9.3-5 [421 kB]
+Get:37 http://ftp.se.debian.org/debian/ unstable/main libxext6 powerpc 2:1.3.0-3 [49.3 kB]
+Get:38 http://ftp.se.debian.org/debian/ unstable/main libxss1 powerpc 1:1.2.1-2 [16.5 kB]
+Get:39 http://ftp.se.debian.org/debian/ unstable/main libxt6 powerpc 1:1.1.1-2 [191 kB]
+Get:40 http://ftp.se.debian.org/debian/ unstable/main bsdmainutils powerpc 8.2.3 [207 kB]
+Get:41 http://ftp.se.debian.org/debian/ unstable/main groff-base powerpc 1.21-6 [1179 kB]
+Get:42 http://ftp.se.debian.org/debian/ unstable/main man-db powerpc 2.6.0.2-2 [1013 kB]
+Get:43 http://ftp.se.debian.org/debian/ unstable/main libmagic1 powerpc 5.09-2 [253 kB]
+Get:44 http://ftp.se.debian.org/debian/ unstable/main file powerpc 5.09-2 [52.0 kB]
+Get:45 http://ftp.se.debian.org/debian/ unstable/main gettext-base powerpc 0.18.1.1-5 [132 kB]
+Get:46 http://ftp.se.debian.org/debian/ unstable/main cdbs all 0.4.99 [77.1 kB]
+Get:47 http://ftp.se.debian.org/debian/ unstable/main html2text powerpc 1.3.2a-15 [105 kB]
+Get:48 http://ftp.se.debian.org/debian/ unstable/main gettext powerpc 0.18.1.1-5 [2036 kB]
+Get:49 http://ftp.se.debian.org/debian/ unstable/main intltool-debian all 0.35.0+20060710.1 [30.8 kB]
+Get:50 http://ftp.se.debian.org/debian/ unstable/main po-debconf all 1.0.16+nmu1 [223 kB]
+Get:51 http://ftp.se.debian.org/debian/ unstable/main debhelper all 8.9.8 [552 kB]
+Get:52 http://ftp.se.debian.org/debian/ unstable/main dpatch all 2.0.33 [95.9 kB]
+Get:53 http://ftp.se.debian.org/debian/ unstable/main gfortran-4.6 powerpc 4.6.2-3 [5264 kB]
+Get:54 http://ftp.se.debian.org/debian/ unstable/main gfortran powerpc 4:4.6.1-3 [1134 B]
+Get:55 http://ftp.se.debian.org/debian/ unstable/main libblas3gf powerpc 1.2.20110419-2 [192 kB]
+Get:56 http://ftp.se.debian.org/debian/ unstable/main libblas-dev powerpc 1.2.20110419-2 [206 kB]
+Get:57 http://ftp.se.debian.org/debian/ unstable/main libbz2-dev powerpc 1.0.5-7 [34.3 kB]
+Get:58 http://ftp.se.debian.org/debian/ unstable/main libjpeg8-dev powerpc 8c-2 [234 kB]
+Get:59 http://ftp.se.debian.org/debian/ unstable/main liblapack3gf powerpc 3.3.1-1 [3956 kB]
+Get:60 http://ftp.se.debian.org/debian/ unstable/main liblapack-dev powerpc 3.3.1-1 [4261 kB]
+Get:61 http://ftp.se.debian.org/debian/ unstable/main libtinfo-dev powerpc 5.9-2 [74.1 kB]
+Get:62 http://ftp.se.debian.org/debian/ unstable/main libncurses5-dev powerpc 5.9-2 [422 kB]
+Get:63 http://ftp.se.debian.org/debian/ unstable/main libpaper1 powerpc 1.1.24+nmu1 [21.5 kB]
+Get:64 http://ftp.se.debian.org/debian/ unstable/main libpaper-utils powerpc 1.1.24+nmu1 [18.0 kB]
+Get:65 http://ftp.se.debian.org/debian/ unstable/main libpcre3-dev powerpc 8.12-4 [313 kB]
+Get:66 http://ftp.se.debian.org/debian/ unstable/main zlib1g-dev powerpc 1:1.2.3.4.dfsg-3 [190 kB]
+Get:67 http://ftp.se.debian.org/debian/ unstable/main libpng12-dev powerpc 1.2.46-3 [265 kB]
+Get:68 http://ftp.se.debian.org/debian/ unstable/main libreadline6-dev powerpc 6.2-7 [258 kB]
+Get:69 http://ftp.se.debian.org/debian/ unstable/main libreadline-dev powerpc 6.2-7 [892 B]
+Get:70 http://ftp.se.debian.org/debian/ unstable/main zip powerpc 3.0-4 [340 kB]
+Get:71 http://ftp.se.debian.org/debian/ unstable/main unzip powerpc 6.0-5 [188 kB]
+Get:72 http://ftp.se.debian.org/debian/ unstable/main xdg-utils all 1.1.0~rc1-2 [70.2 kB]
+Get:73 http://ftp.se.debian.org/debian/ unstable/main tcl8.5 powerpc 8.5.10-1 [1627 kB]
+Get:74 http://ftp.se.debian.org/debian/ unstable/main tk8.5 powerpc 8.5.10-1 [1166 kB]
+Get:75 http://ftp.se.debian.org/debian/ unstable/main r-base-core powerpc 2.14.0-1 [19.0 MB]
+Get:76 http://ftp.se.debian.org/debian/ unstable/main r-base-dev all 2.14.0-1 [3488 B]
debconf: delaying package configuration, since apt-utils is not installed
-Fetched 69.5 MB in 5s (12.3 MB/s)
-(Reading database ... 10791 files and directories currently installed.)
-Preparing to replace libgomp1 4.6.1-4 (using .../libgomp1_4.6.1-5_powerpc.deb) ...
-Unpacking replacement libgomp1 ...
-Preparing to replace gcc-4.6-base 4.6.1-4 (using .../gcc-4.6-base_4.6.1-5_powerpc.deb) ...
-Unpacking replacement gcc-4.6-base ...
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-Setting up libgomp1 (4.6.1-5) ...
-Setting up cpp-4.6 (4.6.1-5) ...
-Setting up gcc-4.6 (4.6.1-5) ...
-Setting up libpipeline1 (1.2.0-3) ...
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+Setting up libpipeline1 (1.2.0-4) ...
+Setting up libpcre3 (8.12-4) ...
+Setting up libglib2.0-0 (2.28.8-1) ...
+No schema files found: doing nothing.
+Setting up libxml2 (2.7.8.dfsg-5) ...
+Setting up libcroco3 (0.6.2-2) ...
Setting up libdatrie1 (0.2.4-3) ...
-Setting up libexpat1 (2.0.1-7) ...
-Setting up libfreetype6 (2.4.4-2) ...
+Setting up libexpat1 (2.0.1-7.1) ...
+Setting up libfreetype6 (2.4.7-2) ...
Setting up ucf (3.0025+nmu2) ...
-Setting up ttf-dejavu-core (2.33-1) ...
+Setting up ttf-dejavu-core (2.33-2) ...
Setting up fontconfig-config (2.8.0-3) ...
Setting up libfontconfig1 (2.8.0-3) ...
-Setting up libgfortran3 (4.6.1-5) ...
-Setting up x11-common (1:7.6+7) ...
+Setting up libgfortran3 (4.6.2-3) ...
+Setting up x11-common (1:7.6+9) ...
All runlevel operations denied by policy
invoke-rc.d: policy-rc.d denied execution of start.
Setting up libice6 (2:1.0.7-2) ...
@@ -489,24 +456,26 @@ Setting up libpng12-0 (1.2.46-3) ...
Setting up libxau6 (1:1.0.6-3) ...
Setting up libxdmcp6 (1:1.1.0-3) ...
Setting up libxcb1 (1.7-3) ...
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-Setting up libx11-6 (2:1.4.4-1) ...
+Setting up libx11-data (2:1.4.4-2) ...
+Setting up libx11-6 (2:1.4.4-2) ...
Setting up libxcb-render0 (1.7-3) ...
Setting up libxcb-shm0 (1.7-3) ...
Setting up libxrender1 (1:0.9.6-2) ...
Setting up libcairo2 (1.10.2-6.1) ...
-Setting up libpcre3 (8.12-3) ...
-Setting up libglib2.0-0 (2.28.6-1) ...
-No schema files found: doing nothing.
Setting up libthai-data (0.1.15-2) ...
Setting up libthai0 (0.1.15-2) ...
Setting up libxft2 (2.2.0-3) ...
Setting up fontconfig (2.8.0-3) ...
Cleaning up old fontconfig caches... done.
Regenerating fonts cache... done.
-Setting up libpango1.0-0 (1.28.4-2) ...
+Setting up libpango1.0-0 (1.29.4-2) ...
+Setting up libpcrecpp0 (8.12-4) ...
Setting up libsm6 (2:1.2.0-2) ...
+Setting up libjpeg8 (8c-2) ...
+Setting up libtiff4 (3.9.5-2) ...
+Setting up libunistring0 (0.9.3-5) ...
Setting up libxext6 (2:1.3.0-3) ...
+Setting up libxss1 (1:1.2.1-2) ...
Setting up libxt6 (1:1.1.1-2) ...
Setting up bsdmainutils (8.2.3) ...
update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode.
@@ -514,47 +483,40 @@ update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in
Setting up groff-base (1.21-6) ...
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Building database of manual pages ...
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+Setting up libmagic1 (5.09-2) ...
+Setting up file (5.09-2) ...
+Setting up gettext-base (0.18.1.1-5) ...
+Setting up cdbs (0.4.99) ...
Setting up html2text (1.3.2a-15) ...
-Setting up libcroco3 (0.6.2-1) ...
-Setting up libunistring0 (0.9.3-4) ...
-Setting up gettext (0.18.1.1-3) ...
+Setting up gettext (0.18.1.1-5) ...
Setting up intltool-debian (0.35.0+20060710.1) ...
Setting up po-debconf (1.0.16+nmu1) ...
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-Setting up cdbs (0.4.96) ...
-Setting up dpatch (2.0.31) ...
-Setting up gfortran-4.6 (4.6.1-5) ...
-Setting up gfortran (4:4.6.1-2) ...
+Setting up debhelper (8.9.8) ...
+Setting up dpatch (2.0.33) ...
+Setting up gfortran-4.6 (4.6.2-3) ...
+Setting up gfortran (4:4.6.1-3) ...
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode.
-Setting up libblas3gf (1.2-8) ...
+Setting up libblas3gf (1.2.20110419-2) ...
update-alternatives: using /usr/lib/libblas/libblas.so.3gf to provide /usr/lib/libblas.so.3gf (libblas.so.3gf) in auto mode.
-Setting up libblas-dev (1.2-8) ...
+Setting up libblas-dev (1.2.20110419-2) ...
update-alternatives: using /usr/lib/libblas/libblas.so to provide /usr/lib/libblas.so (libblas.so) in auto mode.
-Setting up libbz2-dev (1.0.5-6) ...
-Setting up libjpeg62 (6b1-2) ...
-Setting up libjpeg8 (8c-2) ...
+Setting up libbz2-dev (1.0.5-7) ...
Setting up libjpeg8-dev (8c-2) ...
-Setting up liblapack3gf (3.3.0-4) ...
+Setting up liblapack3gf (3.3.1-1) ...
update-alternatives: using /usr/lib/lapack/liblapack.so.3gf to provide /usr/lib/liblapack.so.3gf (liblapack.so.3gf) in auto mode.
-Setting up liblapack-dev (3.3.0-4) ...
+Setting up liblapack-dev (3.3.1-1) ...
update-alternatives: using /usr/lib/lapack/liblapack.so to provide /usr/lib/liblapack.so (liblapack.so) in auto mode.
-Setting up libncurses5-dev (5.9-1) ...
+Setting up libtinfo-dev (5.9-2) ...
+Setting up libncurses5-dev (5.9-2) ...
Setting up libpaper1 (1.1.24+nmu1) ...
Creating config file /etc/papersize with new version
Setting up libpaper-utils (1.1.24+nmu1) ...
-Setting up libpcrecpp0 (8.12-3) ...
-Setting up libpcre3-dev (8.12-3) ...
+Setting up libpcre3-dev (8.12-4) ...
Setting up zlib1g-dev (1:1.2.3.4.dfsg-3) ...
Setting up libpng12-dev (1.2.46-3) ...
-Setting up libreadline6-dev (6.2-2) ...
-Setting up libreadline-dev (6.2-2) ...
-Setting up libtiff4 (3.9.5-1) ...
-Setting up libxss1 (1:1.2.1-1) ...
+Setting up libreadline6-dev (6.2-7) ...
+Setting up libreadline-dev (6.2-7) ...
Setting up zip (3.0-4) ...
Setting up unzip (6.0-5) ...
Setting up xdg-utils (1.1.0~rc1-2) ...
@@ -562,22 +524,20 @@ Setting up tcl8.5 (8.5.10-1) ...
update-alternatives: using /usr/bin/tclsh8.5 to provide /usr/bin/tclsh (tclsh) in auto mode.
Setting up tk8.5 (8.5.10-1) ...
update-alternatives: using /usr/bin/wish8.5 to provide /usr/bin/wish (wish) in auto mode.
-Setting up r-base-core (2.13.1-1) ...
+Setting up r-base-core (2.14.0-1) ...
Setting R_PAPERSIZE_USER default to 'a4'
Creating config file /etc/R/Renviron with new version
-Setting up r-base-dev (2.13.1-1) ...
-Setting up libstdc++6-4.6-dev (4.6.1-5) ...
-Setting up g++-4.6 (4.6.1-5) ...
+Setting up r-base-dev (2.14.0-1) ...
Removing negative dependencies:
Reading package lists...
Building dependency tree...
Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 22 not upgraded.
+0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
Checking correctness of dependencies...
Kernel: Linux 2.6.32-5-powerpc64 powerpc (ppc64)
-Toolchain package versions: binutils_2.21.52.20110707-1 dpkg-dev_1.16.0.3 g++-4.6_4.6.1-5 gcc-4.6_4.6.1-5 libc6-dev_2.13-10 libstdc++6_4.6.1-5 libstdc++6-4.6-dev_4.6.1-5 linux-libc-dev_2.6.39-3
-Package versions: apt_0.8.15.2 base-files_6.4 base-passwd_3.5.23 bash_4.1-3 binutils_2.21.52.20110707-1 bsdmainutils_8.2.3 bsdutils_1:2.19.1-4 build-essential_11.5 bzip2_1.0.5-6 cdbs_0.4.96 coreutils_8.5-1 cpp_4:4.6.1-2 cpp-4.6_4.6.1-5 dash_0.5.5.1-7.4 debconf_1.5.40 debconf-i18n_1.5.40 debfoster_2.7-1.1 debhelper_8.9.3 debian-archive-keyring_2010.08.28 debianutils_4.0.2 diffutils_1:3.0-1 dpatch_2.0.31 dpkg_1.16.0.3 dpkg-dev_1.16.0.3 e2fslibs_1.42~WIP-2011-07-02-1 e2fsprogs_1.42~WIP-2011-07-02-1 fakeroot_1.16-1 file_5.04-5+b1 findutils_4.4.2-1+b1 fontconfig_2.8.0-3 fontconfig-config_2.8.0-3 g++_4:4.6.1-2 g++-4.6_4.6.1-5 gcc_4:4.6.1-2 gcc-4.4-base_4.4.6-6 gcc-4.5-base_4.5.3-3 gcc-4.6_4.6.1-5 gcc-4.6-base_4.6.1-5 gettext_0.18.1.1-3 gettext-base_0.18.1.1-3 gfortran_4:4.6.1-2 gfortran-4.6_4.6.1-5 gnupg_1.4.11-3 gpgv_1.4.11-3 grep_2.9-1 groff-base_1.21-6 gzip_1.4-1 hostname_3.06 html2text_1.3.2a-15 initscripts_2.88dsf-13.11 insserv_1.14.0-2.1 intltool-debian_0.35.0+20060710.1 libacl1_2.2.51-3 libattr1_1:2.4.46-3 libblas-dev_1.2-8 libblas3gf_1.2-8 libblkid1_2.19.1-4 libbz2-1.0_1.0.5-6 libbz2-dev_1.0.5-6 libc-bin_2.13-10 libc-dev-bin_2.13-10 libc6_2.13-10 libc6-dev_2.13-10 libcairo2_1.10.2-6.1 libcloog-ppl0_0.15.9-3 libcomerr2_1.42~WIP-2011-07-02-1 libcroco3_0.6.2-1 libdatrie1_0.2.4-3 libdb5.1_5.1.25-10 libdpkg-perl_1.16.0.3 libexpat1_2.0.1-7 libfontconfig1_2.8.0-3 libfreetype6_2.4.4-2 libgc1c2_1:7.1-8 libgcc1_1:4.6.1-5 libgdbm3_1.8.3-10 libgfortran3_4.6.1-5 libglib2.0-0_2.28.6-1 libgmp10_2:5.0.1+dfsg-7 libgmpxx4ldbl_2:5.0.1+dfsg-7 libgomp1_4.6.1-5 libice6_2:1.0.7-2 libjpeg62_6b1-2 libjpeg8_8c-2 libjpeg8-dev_8c-2 liblapack-dev_3.3.0-4 liblapack3gf_3.3.0-4 liblocale-gettext-perl_1.05-7 liblzma2_5.0.0-2 libmagic1_5.04-5+b1 libmount1_2.19.1-4 libmpc2_0.9-3 libmpfr4_3.0.1-5 libncurses5_5.9-1 libncurses5-dev_5.9-1 libpam-modules_1.1.3-2 libpam-modules-bin_1.1.3-2 libpam-runtime_1.1.3-2 libpam0g_1.1.3-2 libpango1.0-0_1.28.4-2 libpaper-utils_1.1.24+nmu1 libpaper1_1.1.24+nmu1 libpcre3_8.12-3 libpcre3-dev_8.12-3 libpcrecpp0_8.12-3 libpipeline1_1.2.0-3 libpixman-1-0_0.22.2-1 libpng12-0_1.2.46-3 libpng12-dev_1.2.46-3 libppl-c4_0.11.2-4 libppl9_0.11.2-4 libpwl5_0.11.2-4 libreadline-dev_6.2-2 libreadline6_6.2-2 libreadline6-dev_6.2-2 libselinux1_2.0.98-1.1 libsepol1_2.0.42-1 libslang2_2.2.4-2 libsm6_2:1.2.0-2 libss2_1.42~WIP-2011-07-02-1 libstdc++6_4.6.1-5 libstdc++6-4.6-dev_4.6.1-5 libtext-charwidth-perl_0.04-7 libtext-iconv-perl_1.7-4 libtext-wrapi18n-perl_0.06-7 libthai-data_0.1.15-2 libthai0_0.1.15-2 libtiff4_3.9.5-1 libtimedate-perl_1.2000-1 libunistring0_0.9.3-4 libusb-0.1-4_2:0.1.12-18 libuuid1_2.19.1-4 libx11-6_2:1.4.4-1 libx11-data_2:1.4.4-1 libxau6_1:1.0.6-3 libxcb-render0_1.7-3 libxcb-shm0_1.7-3 libxcb1_1.7-3 libxdmcp6_1:1.1.0-3 libxext6_2:1.3.0-3 libxft2_2.2.0-3 libxml2_2.7.8.dfsg-4 libxrender1_1:0.9.6-2 libxss1_1:1.2.1-1 libxt6_1:1.1.1-2 linux-libc-dev_2.6.39-3 login_1:4.1.4.2+svn3283-3 lsb-base_3.2-27 make_3.81-8.1 man-db_2.6.0.2-2 mawk_1.3.3-15 mount_2.19.1-4 multiarch-support_2.13-10 ncurses-base_5.9-1 ncurses-bin_5.9-1 passwd_1:4.1.4.2+svn3283-3 patch_2.6.1-2 perl_5.12.4-1 perl-base_5.12.4-1 perl-modules_5.12.4-1 po-debconf_1.0.16+nmu1 r-base-core_2.13.1-1 r-base-dev_2.13.1-1 readline-common_6.2-2 sed_4.2.1-9 sensible-utils_0.0.6 sudo_1.7.4p6-1 sysv-rc_2.88dsf-13.11 sysvinit_2.88dsf-13.11 sysvinit-utils_2.88dsf-13.11 tar_1.25-3 tcl8.5_8.5.10-1 tk8.5_8.5.10-1 ttf-dejavu-core_2.33-1 tzdata_2011h-3 ucf_3.0025+nmu2 unzip_6.0-5 util-linux_2.19.1-4 x11-common_1:7.6+7 xdg-utils_1.1.0~rc1-2 xz-utils_5.0.0-2 zip_3.0-4 zlib1g_1:1.2.3.4.dfsg-3 zlib1g-dev_1:1.2.3.4.dfsg-3
+Toolchain package versions: binutils_2.21.90.20111025-1 dpkg-dev_1.16.1.1 g++-4.6_4.6.2-3 gcc-4.6_4.6.2-3 libc6-dev_2.13-21 libstdc++6_4.6.2-3 libstdc++6-4.6-dev_4.6.2-3 linux-libc-dev_3.0.0-5
+Package versions: apt_0.8.15.9 base-files_6.5 base-passwd_3.5.23 bash_4.1-3 binutils_2.21.90.20111025-1 bsdmainutils_8.2.3 bsdutils_1:2.19.1-5 build-essential_11.5 bzip2_1.0.5-7 cdbs_0.4.99 coreutils_8.13-3 cpp_4:4.6.1-3 cpp-4.6_4.6.2-3 dash_0.5.7-2 debconf_1.5.41 debconf-i18n_1.5.41 debfoster_2.7-1.1 debhelper_8.9.8 debian-archive-keyring_2010.08.28 debianutils_4.0.4 diffutils_1:3.2-1 dpatch_2.0.33 dpkg_1.16.1.1 dpkg-dev_1.16.1.1 e2fslibs_1.42~WIP-2011-10-16-1 e2fsprogs_1.42~WIP-2011-10-16-1 fakeroot_1.18.1-1 file_5.09-2 findutils_4.4.2-1+b1 fontconfig_2.8.0-3 fontconfig-config_2.8.0-3 g++_4:4.6.1-3 g++-4.6_4.6.2-3 gcc_4:4.6.1-3 gcc-4.4-base_4.4.6-11 gcc-4.5-base_4.5.3-9 gcc-4.6_4.6.2-3 gcc-4.6-base_4.6.2-3 gettext_0.18.1.1-5 gettext-base_0.18.1.1-5 gfortran_4:4.6.1-3 gfortran-4.6_4.6.2-3 gnupg_1.4.11-3 gpgv_1.4.11-3 grep_2.9-2 groff-base_1.21-6 gzip_1.4-1 hostname_3.06 html2text_1.3.2a-15 initscripts_2.88dsf-13.12 insserv_1.14.0-2.1 intltool-debian_0.35.0+20060710.1 libacl1_2.2.51-3 libattr1_1:2.4.46-3 libblas-dev_1.2.20110419-2 libblas3gf_1.2.20110419-2 libblkid1_2.19.1-5 libbz2-1.0_1.0.5-7 libbz2-dev_1.0.5-7 libc-bin_2.13-21 libc-dev-bin_2.13-21 libc6_2.13-21 libc6-dev_2.13-21 libcairo2_1.10.2-6.1 libcomerr2_1.42~WIP-2011-10-16-1 libcroco3_0.6.2-2 libdatrie1_0.2.4-3 libdb5.1_5.1.25-11 libdpkg-perl_1.16.1.1 libexpat1_2.0.1-7.1 libfontconfig1_2.8.0-3 libfreetype6_2.4.7-2 libgc1c2_1:7.1-8 libgcc1_1:4.6.2-3 libgdbm3_1.8.3-10 libgfortran3_4.6.2-3 libglib2.0-0_2.28.8-1 libgmp10_2:5.0.2+dfsg-2 libgomp1_4.6.2-3 libice6_2:1.0.7-2 libjpeg8_8c-2 libjpeg8-dev_8c-2 liblapack-dev_3.3.1-1 liblapack3gf_3.3.1-1 liblocale-gettext-perl_1.05-7 liblzma2_5.1.1alpha+20110809-2 liblzma5_5.1.1alpha+20110809-3 libmagic1_5.09-2 libmount1_2.19.1-5 libmpc2_0.9-4 libmpfr4_3.1.0-2 libncurses5_5.9-2 libncurses5-dev_5.9-2 libpam-modules_1.1.3-5 libpam-modules-bin_1.1.3-5 libpam-runtime_1.1.3-5 libpam0g_1.1.3-5 libpango1.0-0_1.29.4-2 libpaper-utils_1.1.24+nmu1 libpaper1_1.1.24+nmu1 libpcre3_8.12-4 libpcre3-dev_8.12-4 libpcrecpp0_8.12-4 libpipeline1_1.2.0-4 libpixman-1-0_0.22.2-1 libpng12-0_1.2.46-3 libpng12-dev_1.2.46-3 libreadline-dev_6.2-7 libreadline6_6.2-7 libreadline6-dev_6.2-7 libselinux1_2.1.0-4 libsepol1_2.1.0-1.1 libslang2_2.2.4-3 libsm6_2:1.2.0-2 libss2_1.42~WIP-2011-10-16-1 libstdc++6_4.6.2-3 libstdc++6-4.6-dev_4.6.2-3 libtext-charwidth-perl_0.04-7 libtext-iconv-perl_1.7-4 libtext-wrapi18n-perl_0.06-7 libthai-data_0.1.15-2 libthai0_0.1.15-2 libtiff4_3.9.5-2 libtimedate-perl_1.2000-1 libtinfo-dev_5.9-2 libtinfo5_5.9-2 libunistring0_0.9.3-5 libusb-0.1-4_2:0.1.12-19 libuuid1_2.19.1-5 libx11-6_2:1.4.4-2 libx11-data_2:1.4.4-2 libxau6_1:1.0.6-3 libxcb-render0_1.7-3 libxcb-shm0_1.7-3 libxcb1_1.7-3 libxdmcp6_1:1.1.0-3 libxext6_2:1.3.0-3 libxft2_2.2.0-3 libxml2_2.7.8.dfsg-5 libxrender1_1:0.9.6-2 libxss1_1:1.2.1-2 libxt6_1:1.1.1-2 linux-libc-dev_3.0.0-5 login_1:4.1.4.2+svn3283-3 lsb-base_3.2-28 make_3.81-8.1 man-db_2.6.0.2-2 mawk_1.3.3-16 mount_2.19.1-5 multiarch-support_2.13-21 ncurses-base_5.9-2 ncurses-bin_5.9-2 passwd_1:4.1.4.2+svn3283-3 patch_2.6.1-2 perl_5.12.4-6 perl-base_5.12.4-6 perl-modules_5.12.4-6 po-debconf_1.0.16+nmu1 r-base-core_2.14.0-1 r-base-dev_2.14.0-1 readline-common_6.2-7 sed_4.2.1-9 sensible-utils_0.0.6 sudo_1.8.3p1-1 sysv-rc_2.88dsf-13.12 sysvinit_2.88dsf-13.12 sysvinit-utils_2.88dsf-13.12 tar_1.26-2 tcl8.5_8.5.10-1 tk8.5_8.5.10-1 ttf-dejavu-core_2.33-2 tzdata_2011n-1 ucf_3.0025+nmu2 unzip_6.0-5 util-linux_2.19.1-5 x11-common_1:7.6+9 xdg-utils_1.1.0~rc1-2 xz-utils_5.1.1alpha+20110809-3 zip_3.0-4 zlib1g_1:1.2.3.4.dfsg-3 zlib1g-dev_1:1.2.3.4.dfsg-3
┌──────────────────────────────────────────────────────────────────────────────┐
│ Build │
@@ -588,12 +548,12 @@ Unpack source
─────────────
gpgv: keyblock resource `/home/buildd/.gnupg/trustedkeys.gpg': file open error
-gpgv: Signature made Thu Aug 4 00:12:34 2011 UTC using RSA key ID 2295D502
+gpgv: Signature made Wed Nov 2 05:31:37 2011 UTC using RSA key ID 2295D502
gpgv: Can't check signature: public key not found
-dpkg-source: warning: failed to verify signature on ./r-bioc-biobase_2.12.2-1.dsc
-dpkg-source: info: extracting r-bioc-biobase in r-bioc-biobase-2.12.2
-dpkg-source: info: unpacking r-bioc-biobase_2.12.2.orig.tar.gz
-dpkg-source: info: applying r-bioc-biobase_2.12.2-1.diff.gz
+dpkg-source: warning: failed to verify signature on ./r-bioc-biobase_2.14.0-1.dsc
+dpkg-source: info: extracting r-bioc-biobase in r-bioc-biobase-2.14.0
+dpkg-source: info: unpacking r-bioc-biobase_2.14.0.orig.tar.gz
+dpkg-source: info: applying r-bioc-biobase_2.14.0-1.diff.gz
Check disc space
────────────────
@@ -602,14 +562,9 @@ Check disc space
dpkg-buildpackage
─────────────────
-dpkg-buildpackage: export CFLAGS from dpkg-buildflags (origin: vendor): -g -O2
-dpkg-buildpackage: export CPPFLAGS from dpkg-buildflags (origin: vendor):
-dpkg-buildpackage: export CXXFLAGS from dpkg-buildflags (origin: vendor): -g -O2
-dpkg-buildpackage: export FFLAGS from dpkg-buildflags (origin: vendor): -g -O2
-dpkg-buildpackage: export LDFLAGS from dpkg-buildflags (origin: vendor):
dpkg-buildpackage: source package r-bioc-biobase
-dpkg-buildpackage: source version 2.12.2-1
- dpkg-source --before-build r-bioc-biobase-2.12.2
+dpkg-buildpackage: source version 2.14.0-1
+ dpkg-source --before-build r-bioc-biobase-2.14.0
dpkg-buildpackage: host architecture powerpc
fakeroot debian/rules clean
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
@@ -617,9 +572,9 @@ test -x debian/rules
dh_testroot
/usr/bin/make -f debian/rules reverse-config
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
-make[1]: Entering directory `/build/buildd-r-bioc-biobase_2.12.2-1-powerpc-yjJauj/r-bioc-biobase-2.12.2'
+make[1]: Entering directory `/build/buildd-r-bioc-biobase_2.14.0-1-powerpc-2BK5S9/r-bioc-biobase-2.14.0'
make[1]: Nothing to be done for `reverse-config'.
-make[1]: Leaving directory `/build/buildd-r-bioc-biobase_2.12.2-1-powerpc-yjJauj/r-bioc-biobase-2.12.2'
+make[1]: Leaving directory `/build/buildd-r-bioc-biobase_2.14.0-1-powerpc-2BK5S9/r-bioc-biobase-2.14.0'
if [ "reverse-patches" = "reverse-patches" ]; then rm -f debian/stamp-patched; fi
patches:
if [ "reverse-patches" != "reverse-patches" ]; then touch debian/stamp-patched; fi
@@ -639,21 +594,22 @@ rm -f config.log config.status
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
test -x debian/rules
mkdir -p "."
+/usr/share/cdbs/1/rules/buildcore.mk:109: WARNING: DEB_DH_BUILDDEB_ARGS is a deprecated variable
/usr/bin/make -f debian/rules reverse-config
-/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) insteadmake[1]: Entering directory `/build/buildd-r-bioc-biobase_2.12.2-1-powerpc-yjJauj/r-bioc-biobase-2.12.2'
-
+/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
+make[1]: Entering directory `/build/buildd-r-bioc-biobase_2.14.0-1-powerpc-2BK5S9/r-bioc-biobase-2.14.0'
make[1]: Nothing to be done for `reverse-config'.
-make[1]: Leaving directory `/build/buildd-r-bioc-biobase_2.12.2-1-powerpc-yjJauj/r-bioc-biobase-2.12.2'
+make[1]: Leaving directory `/build/buildd-r-bioc-biobase_2.14.0-1-powerpc-2BK5S9/r-bioc-biobase-2.14.0'
if [ "debian/stamp-patched" = "reverse-patches" ]; then rm -f debian/stamp-patched; fi
patches:
if [ "debian/stamp-patched" != "reverse-patches" ]; then touch debian/stamp-patched; fi
if [ "debian/stamp-patched" != "reverse-patches" ] ; then \
/usr/bin/make -f debian/rules update-config ; \
fi
-/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) insteadmake[1]: Entering directory `/build/buildd-r-bioc-biobase_2.12.2-1-powerpc-yjJauj/r-bioc-biobase-2.12.2'
-
+/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
+make[1]: Entering directory `/build/buildd-r-bioc-biobase_2.14.0-1-powerpc-2BK5S9/r-bioc-biobase-2.14.0'
make[1]: Nothing to be done for `update-config'.
-make[1]: Leaving directory `/build/buildd-r-bioc-biobase_2.12.2-1-powerpc-yjJauj/r-bioc-biobase-2.12.2'
+make[1]: Leaving directory `/build/buildd-r-bioc-biobase_2.14.0-1-powerpc-2BK5S9/r-bioc-biobase-2.14.0'
fakeroot debian/rules binary-arch
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
test -x debian/rules
@@ -661,29 +617,30 @@ dh_testroot
dh_prep
dh_installdirs -A
mkdir -p "."
+/usr/share/cdbs/1/rules/buildcore.mk:109: WARNING: DEB_DH_BUILDDEB_ARGS is a deprecated variable
dh_installdirs usr/lib/R/site-library
if test -f /usr/bin/xvfb-run; then \
xvfb-run -a \
- R CMD INSTALL -l /build/buildd-r-bioc-biobase_2.12.2-1-powerpc-yjJauj/r-bioc-biobase-2.12.2/debian/r-bioc-biobase/usr/lib/R/site-library --clean \
+ R CMD INSTALL -l /build/buildd-r-bioc-biobase_2.14.0-1-powerpc-2BK5S9/r-bioc-biobase-2.14.0/debian/r-bioc-biobase/usr/lib/R/site-library --clean \
. ; \
else \
- R CMD INSTALL -l /build/buildd-r-bioc-biobase_2.12.2-1-powerpc-yjJauj/r-bioc-biobase-2.12.2/debian/r-bioc-biobase/usr/lib/R/site-library \
+ R CMD INSTALL -l /build/buildd-r-bioc-biobase_2.14.0-1-powerpc-2BK5S9/r-bioc-biobase-2.14.0/debian/r-bioc-biobase/usr/lib/R/site-library \
--clean . ;\
fi
* installing *source* package 'Biobase' ...
** libs
-make[1]: Entering directory `/build/buildd-r-bioc-biobase_2.12.2-1-powerpc-yjJauj/r-bioc-biobase-2.12.2/src'
-gcc -I/usr/share/R/include -fpic -std=gnu99 -O3 -pipe -g -c Rinit.c -o Rinit.o
-gcc -I/usr/share/R/include -fpic -std=gnu99 -O3 -pipe -g -c anyMissing.c -o anyMissing.o
-gcc -I/usr/share/R/include -fpic -std=gnu99 -O3 -pipe -g -c envir.c -o envir.o
-gcc -I/usr/share/R/include -fpic -std=gnu99 -O3 -pipe -g -c matchpt.c -o matchpt.o
-gcc -I/usr/share/R/include -fpic -std=gnu99 -O3 -pipe -g -c rowMedians.c -o rowMedians.o
-gcc -I/usr/share/R/include -fpic -std=gnu99 -O3 -pipe -g -c sublist_extract.c -o sublist_extract.o
-gcc -shared -o Biobase.so Rinit.o anyMissing.o envir.o matchpt.o rowMedians.o sublist_extract.o -L/usr/lib/R/lib -lR
-make[1]: Leaving directory `/build/buildd-r-bioc-biobase_2.12.2-1-powerpc-yjJauj/r-bioc-biobase-2.12.2/src'
-make[1]: Entering directory `/build/buildd-r-bioc-biobase_2.12.2-1-powerpc-yjJauj/r-bioc-biobase-2.12.2/src'
-make[1]: Leaving directory `/build/buildd-r-bioc-biobase_2.12.2-1-powerpc-yjJauj/r-bioc-biobase-2.12.2/src'
-installing to /build/buildd-r-bioc-biobase_2.12.2-1-powerpc-yjJauj/r-bioc-biobase-2.12.2/debian/r-bioc-biobase/usr/lib/R/site-library/Biobase/libs
+make[1]: Entering directory `/build/buildd-r-bioc-biobase_2.14.0-1-powerpc-2BK5S9/r-bioc-biobase-2.14.0/src'
+gcc -std=gnu99 -I/usr/share/R/include -fpic -O3 -pipe -g -c Rinit.c -o Rinit.o
+gcc -std=gnu99 -I/usr/share/R/include -fpic -O3 -pipe -g -c anyMissing.c -o anyMissing.o
+gcc -std=gnu99 -I/usr/share/R/include -fpic -O3 -pipe -g -c envir.c -o envir.o
+gcc -std=gnu99 -I/usr/share/R/include -fpic -O3 -pipe -g -c matchpt.c -o matchpt.o
+gcc -std=gnu99 -I/usr/share/R/include -fpic -O3 -pipe -g -c rowMedians.c -o rowMedians.o
+gcc -std=gnu99 -I/usr/share/R/include -fpic -O3 -pipe -g -c sublist_extract.c -o sublist_extract.o
+gcc -std=gnu99 -shared -o Biobase.so Rinit.o anyMissing.o envir.o matchpt.o rowMedians.o sublist_extract.o -L/usr/lib/R/lib -lR
+make[1]: Leaving directory `/build/buildd-r-bioc-biobase_2.14.0-1-powerpc-2BK5S9/r-bioc-biobase-2.14.0/src'
+make[1]: Entering directory `/build/buildd-r-bioc-biobase_2.14.0-1-powerpc-2BK5S9/r-bioc-biobase-2.14.0/src'
+make[1]: Leaving directory `/build/buildd-r-bioc-biobase_2.14.0-1-powerpc-2BK5S9/r-bioc-biobase-2.14.0/src'
+installing to /build/buildd-r-bioc-biobase_2.14.0-1-powerpc-2BK5S9/r-bioc-biobase-2.14.0/debian/r-bioc-biobase/usr/lib/R/site-library/Biobase/libs
** R
** data
** inst
@@ -691,20 +648,27 @@ installing to /build/buildd-r-bioc-biobase_2.12.2-1-powerpc-yjJauj/r-bioc-biobas
** help
*** installing help indices
** building package indices ...
+*** tangling vignette sources ...
+ 'BiobaseDevelopment.Rnw'
+ 'Bioconductor.Rnw'
+ 'ExpressionSetIntroduction.Rnw'
+ 'HowTo.Rnw'
+ 'Qviews.Rnw'
+ 'esApply.Rnw'
** testing if installed package can be loaded
* DONE (Biobase)
-rm -vf /build/buildd-r-bioc-biobase_2.12.2-1-powerpc-yjJauj/r-bioc-biobase-2.12.2/debian/r-bioc-biobase/usr/lib/R/site-library/R.css \
- /build/buildd-r-bioc-biobase_2.12.2-1-powerpc-yjJauj/r-bioc-biobase-2.12.2/debian/r-bioc-biobase/usr/lib/R/site-library/Biobase/COPYING \
- /build/buildd-r-bioc-biobase_2.12.2-1-powerpc-yjJauj/r-bioc-biobase-2.12.2/debian/r-bioc-biobase/usr/lib/R/site-library/Biobase/LICENSE.txt
+rm -vf /build/buildd-r-bioc-biobase_2.14.0-1-powerpc-2BK5S9/r-bioc-biobase-2.14.0/debian/r-bioc-biobase/usr/lib/R/site-library/R.css \
+ /build/buildd-r-bioc-biobase_2.14.0-1-powerpc-2BK5S9/r-bioc-biobase-2.14.0/debian/r-bioc-biobase/usr/lib/R/site-library/Biobase/COPYING \
+ /build/buildd-r-bioc-biobase_2.14.0-1-powerpc-2BK5S9/r-bioc-biobase-2.14.0/debian/r-bioc-biobase/usr/lib/R/site-library/Biobase/LICENSE.txt
if test -f debian/overrides; then \
- install -d /build/buildd-r-bioc-biobase_2.12.2-1-powerpc-yjJauj/r-bioc-biobase-2.12.2/debian/r-bioc-biobase/usr/share/lintian/overrides ; \
+ install -d /build/buildd-r-bioc-biobase_2.14.0-1-powerpc-2BK5S9/r-bioc-biobase-2.14.0/debian/r-bioc-biobase/usr/share/lintian/overrides ; \
install -m 0644 debian/overrides \
- /build/buildd-r-bioc-biobase_2.12.2-1-powerpc-yjJauj/r-bioc-biobase-2.12.2/debian/r-bioc-biobase/usr/share/lintian/overrides/r-bioc-biobase; \
+ /build/buildd-r-bioc-biobase_2.14.0-1-powerpc-2BK5S9/r-bioc-biobase-2.14.0/debian/r-bioc-biobase/usr/share/lintian/overrides/r-bioc-biobase; \
fi
Adding cdbs dependencies to debian/r-bioc-biobase.substvars
dh_installdirs -pr-bioc-biobase
-echo "R:Depends=r-base-core (>= 2.13.1~)" >> debian/r-bioc-biobase.substvars
+echo "R:Depends=r-base-core (>= 2.14.0~)" >> debian/r-bioc-biobase.substvars
dh_installdocs -pr-bioc-biobase ./NEWS
dh_installexamples -pr-bioc-biobase
dh_installman -pr-bioc-biobase
@@ -735,23 +699,23 @@ dh_perl -pr-bioc-biobase
dh_shlibdeps -pr-bioc-biobase
dh_gencontrol -pr-bioc-biobase
dh_md5sums -pr-bioc-biobase
-dh_builddeb -pr-bioc-biobase
-dpkg-deb: building package `r-bioc-biobase' in `../r-bioc-biobase_2.12.2-1_powerpc.deb'.
- dpkg-genchanges -B -mpowerpc Build Daemon (praetorius) <buildd_powerpc-praetorius at buildd.debian.org> >../r-bioc-biobase_2.12.2-1_powerpc.changes
+dh_builddeb -pr-bioc-biobase -- -Z xz
+dpkg-deb: building package `r-bioc-biobase' in `../r-bioc-biobase_2.14.0-1_powerpc.deb'.
+ dpkg-genchanges -B -mpowerpc Build Daemon (praetorius) <buildd_powerpc-praetorius at buildd.debian.org> >../r-bioc-biobase_2.14.0-1_powerpc.changes
dpkg-genchanges: arch-specific upload - not including arch-independent packages
dpkg-genchanges: binary-only upload - not including any source code
- dpkg-source --after-build r-bioc-biobase-2.12.2
+ dpkg-source --after-build r-bioc-biobase-2.14.0
dpkg-buildpackage: binary only upload (no source included)
────────────────────────────────────────────────────────────────────────────────
-Build finished at 20110804-0028
+Build finished at 20111102-0717
-r-bioc-biobase_2.12.2-1_powerpc.changes:
+r-bioc-biobase_2.14.0-1_powerpc.changes:
Format: 1.8
-Date: Thu, 04 Aug 2011 08:58:03 +0900
+Date: Wed, 02 Nov 2011 13:52:04 +0900
Source: r-bioc-biobase
Binary: r-bioc-biobase
Architecture: powerpc
-Version: 2.12.2-1
+Version: 2.14.0-1
Distribution: sid
Urgency: low
Maintainer: powerpc Build Daemon (praetorius) <buildd_powerpc-praetorius at buildd.debian.org>
@@ -759,34 +723,38 @@ Changed-By: Charles Plessy <plessy at debian.org>
Description:
r-bioc-biobase - base functions for Bioconductor
Changes:
- r-bioc-biobase (2.12.2-1) unstable; urgency=low
+ r-bioc-biobase (2.14.0-1) unstable; urgency=low
.
- * New upstream release.
+ [cb6b786] Bioconductor release 2.9.
+ [d70e490] Build-Depend on R >= 2.10 according to DESCRIPTION.
+ [ae99e35] Include 7 digits of the commit id in the changelog entry.
+ [33b5d47] Compress binary package with xz.
Checksums-Sha1:
- 8a7ff691de43f52b7aa010bde2e62756e5fbc5da 2666098 r-bioc-biobase_2.12.2-1_powerpc.deb
+ 0b852c72faafa2ae198b8ed6ce73feb23009fe2f 2315824 r-bioc-biobase_2.14.0-1_powerpc.deb
Checksums-Sha256:
- c4cbe9462af177854cfd86bd0f4fcdc9d58a5c0970954da439195529593444b9 2666098 r-bioc-biobase_2.12.2-1_powerpc.deb
+ e1df4a6747447b024fb4260c1dcff704597ced9bc2ec4773569255743acc8e34 2315824 r-bioc-biobase_2.14.0-1_powerpc.deb
Files:
- 975d06eb474c89171bb07ead07923c0e 2666098 gnu-r optional r-bioc-biobase_2.12.2-1_powerpc.deb
+ beb44cd1724ead006622cbee9a14b8ae 2315824 gnu-r optional r-bioc-biobase_2.14.0-1_powerpc.deb
┌──────────────────────────────────────────────────────────────────────────────┐
│ Package contents │
└──────────────────────────────────────────────────────────────────────────────┘
-r-bioc-biobase_2.12.2-1_powerpc.deb
+r-bioc-biobase_2.14.0-1_powerpc.deb
───────────────────────────────────
new debian package, version 2.0.
- size 2666098 bytes: control archive= 4943 bytes.
- 1189 bytes, 25 lines control
+ size 2315824 bytes: control archive= 4952 bytes.
+ 1219 bytes, 26 lines control
13314 bytes, 141 lines md5sums
Package: r-bioc-biobase
- Version: 2.12.2-1
+ Version: 2.14.0-1
Architecture: powerpc
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
- Installed-Size: 3796
- Depends: libc6 (>= 2.3), r-base-core (>= 2.13.1~)
+ Installed-Size: 3068
+ Pre-Depends: dpkg (>= 1.15.6)
+ Depends: libc6 (>= 2.3), r-base-core (>= 2.14.0~)
Section: gnu-r
Priority: optional
Homepage: http://www.bioconductor.org
@@ -807,177 +775,177 @@ r-bioc-biobase_2.12.2-1_powerpc.deb
unofficial auto-generated Bioconductor packages for Debian and Ubuntu systems,
that are prepared by members of the Debian Med team.
-drwxr-xr-x root/root 0 2011-08-04 00:28 ./
-drwxr-xr-x root/root 0 2011-08-04 00:28 ./usr/
-drwxr-xr-x root/root 0 2011-08-04 00:28 ./usr/lib/
-drwxr-xr-x root/root 0 2011-08-04 00:28 ./usr/lib/R/
-drwxr-xr-x root/root 0 2011-08-04 00:28 ./usr/lib/R/site-library/
-drwxr-xr-x root/root 0 2011-08-04 00:28 ./usr/lib/R/site-library/Biobase/
-drwxr-xr-x root/root 0 2011-08-04 00:28 ./usr/lib/R/site-library/Biobase/scripts/
--rw-r--r-- root/root 2008 2011-08-04 00:28 ./usr/lib/R/site-library/Biobase/scripts/makeExpressionSetPackage.R
--rw-r--r-- root/root 774 2011-08-04 00:28 ./usr/lib/R/site-library/Biobase/scripts/esetTesting.R
--rw-r--r-- root/root 1213 2011-08-04 00:28 ./usr/lib/R/site-library/Biobase/scripts/getBioCHelp
--rw-r--r-- root/root 6808 2011-08-04 00:28 ./usr/lib/R/site-library/Biobase/scripts/query.packages.R
--rw-r--r-- root/root 1122 2011-08-04 00:28 ./usr/lib/R/site-library/Biobase/scripts/getBioCPkgNames.R
--rw-r--r-- root/root 5365 2011-08-04 00:28 ./usr/lib/R/site-library/Biobase/scripts/getBioC.R
-drwxr-xr-x root/root 0 2011-08-04 00:28 ./usr/lib/R/site-library/Biobase/extdata/
--rw-r--r-- root/root 109039 2011-08-04 00:28 ./usr/lib/R/site-library/Biobase/extdata/exprsData.txt
--rw-r--r-- root/root 715 2011-08-04 00:28 ./usr/lib/R/site-library/Biobase/extdata/pData.txt
-drwxr-xr-x root/root 0 2011-08-04 00:28 ./usr/lib/R/site-library/Biobase/libs/
--rw-r--r-- root/root 19272 2011-08-04 00:28 ./usr/lib/R/site-library/Biobase/libs/Biobase.so
-drwxr-xr-x root/root 0 2011-08-04 00:28 ./usr/lib/R/site-library/Biobase/Code/
-drwxr-xr-x root/root 0 2011-08-04 00:28 ./usr/lib/R/site-library/Biobase/Code/man/
--rw-r--r-- root/root 350 2011-08-04 00:28 ./usr/lib/R/site-library/Biobase/Code/man/get at PKGNAME@.Rd
--rw-r--r-- root/root 487 2011-08-04 00:28 ./usr/lib/R/site-library/Biobase/Code/man/@PKGNAME at .Rd
-drwxr-xr-x root/root 0 2011-08-04 00:28 ./usr/lib/R/site-library/Biobase/Code/R/
--rw-r--r-- root/root 91 2011-08-04 00:28 ./usr/lib/R/site-library/Biobase/Code/R/get at PKGNAME@.R
--rw-r--r-- root/root 201 2011-08-04 00:28 ./usr/lib/R/site-library/Biobase/Code/DESCRIPTION
--rw-r--r-- root/root 650 2011-08-04 00:28 ./usr/lib/R/site-library/Biobase/CITATION
-drwxr-xr-x root/root 0 2011-08-04 00:28 ./usr/lib/R/site-library/Biobase/Meta/
--rw-r--r-- root/root 5637 2011-08-04 00:28 ./usr/lib/R/site-library/Biobase/Meta/Rd.rds
--rw-r--r-- root/root 475 2011-08-04 00:28 ./usr/lib/R/site-library/Biobase/Meta/vignette.rds
--rw-r--r-- root/root 1029 2011-08-04 00:28 ./usr/lib/R/site-library/Biobase/Meta/package.rds
--rw-r--r-- root/root 5633 2011-08-04 00:28 ./usr/lib/R/site-library/Biobase/Meta/hsearch.rds
--rw-r--r-- root/root 324 2011-08-04 00:28 ./usr/lib/R/site-library/Biobase/Meta/data.rds
--rw-r--r-- root/root 3431 2011-08-04 00:28 ./usr/lib/R/site-library/Biobase/Meta/links.rds
--rw-r--r-- root/root 1359 2011-08-04 00:28 ./usr/lib/R/site-library/Biobase/Meta/nsInfo.rds
--rw-r--r-- root/root 6600 2011-08-04 00:28 ./usr/lib/R/site-library/Biobase/INDEX
--rw-r--r-- root/root 2870 2011-08-04 00:28 ./usr/lib/R/site-library/Biobase/NAMESPACE
-drwxr-xr-x root/root 0 2011-08-04 00:28 ./usr/lib/R/site-library/Biobase/help/
--rw-r--r-- root/root 1990 2011-08-04 00:28 ./usr/lib/R/site-library/Biobase/help/Biobase.rdx
--rw-r--r-- root/root 242554 2011-08-04 00:28 ./usr/lib/R/site-library/Biobase/help/Biobase.rdb
--rw-r--r-- root/root 3321 2011-08-04 00:28 ./usr/lib/R/site-library/Biobase/help/aliases.rds
--rw-r--r-- root/root 854 2011-08-04 00:28 ./usr/lib/R/site-library/Biobase/help/paths.rds
--rw-r--r-- root/root 14396 2011-08-04 00:28 ./usr/lib/R/site-library/Biobase/help/AnIndex
-drwxr-xr-x root/root 0 2011-08-04 00:28 ./usr/lib/R/site-library/Biobase/html/
--rw-r--r-- root/root 51239 2011-08-04 00:28 ./usr/lib/R/site-library/Biobase/html/00Index.html
--rw-r--r-- root/root 1179 2011-08-04 00:28 ./usr/lib/R/site-library/Biobase/html/R.css
--rw-r--r-- root/root 3988 2011-08-04 00:28 ./usr/lib/R/site-library/Biobase/NEWS
-drwxr-xr-x root/root 0 2011-08-04 00:28 ./usr/lib/R/site-library/Biobase/data/
--rw-r--r-- root/root 345999 2011-08-04 00:28 ./usr/lib/R/site-library/Biobase/data/SW.rda
--rw-r--r-- root/root 501 2011-08-04 00:28 ./usr/lib/R/site-library/Biobase/data/geneCov.R
--rw-r--r-- root/root 117 2011-08-04 00:28 ./usr/lib/R/site-library/Biobase/data/sample.exprSet.1.R
--rw-r--r-- root/root 277973 2011-08-04 00:28 ./usr/lib/R/site-library/Biobase/data/sample.ExpressionSet.rda
--rw-r--r-- root/root 28463 2011-08-04 00:28 ./usr/lib/R/site-library/Biobase/data/seD.rda
--rw-r--r-- root/root 1556 2011-08-04 00:28 ./usr/lib/R/site-library/Biobase/data/aaMap.R
--rw-r--r-- root/root 25217 2011-08-04 00:28 ./usr/lib/R/site-library/Biobase/data/sample.MultiSet.rda
--rw-r--r-- root/root 115 2011-08-04 00:28 ./usr/lib/R/site-library/Biobase/data/sample.exprSet.R
--rw-r--r-- root/root 2032 2011-08-04 00:28 ./usr/lib/R/site-library/Biobase/data/reporter.rda
--rw-r--r-- root/root 107 2011-08-04 00:28 ./usr/lib/R/site-library/Biobase/data/sample.eSet.R
--rw-r--r-- root/root 125627 2011-08-04 00:28 ./usr/lib/R/site-library/Biobase/data/geneData.R
--rw-r--r-- root/root 435 2011-08-04 00:28 ./usr/lib/R/site-library/Biobase/data/geneCovariate.rda
--rw-r--r-- root/root 516 2011-08-04 00:28 ./usr/lib/R/site-library/Biobase/testClass.R
-drwxr-xr-x root/root 0 2011-08-04 00:28 ./usr/lib/R/site-library/Biobase/doc/
--rw-r--r-- root/root 3067 2011-08-04 00:28 ./usr/lib/R/site-library/Biobase/doc/Bioconductor.Rnw
--rw-r--r-- root/root 3987 2011-08-04 00:28 ./usr/lib/R/site-library/Biobase/doc/Qviews.R
--rw-r--r-- root/root 8004 2011-08-04 00:28 ./usr/lib/R/site-library/Biobase/doc/BiobaseDevelopment.R
--rw-r--r-- root/root 76653 2011-08-04 00:28 ./usr/lib/R/site-library/Biobase/doc/Bioconductor.pdf
--rw-r--r-- root/root 3727 2011-08-04 00:28 ./usr/lib/R/site-library/Biobase/doc/esApply.Rnw
--rw-r--r-- root/root 18067 2011-08-04 00:28 ./usr/lib/R/site-library/Biobase/doc/ExpressionSetIntroduction.Rnw
--rw-r--r-- root/root 3048 2011-08-04 00:28 ./usr/lib/R/site-library/Biobase/doc/HowTo.Rnw
--rw-r--r-- root/root 28377 2011-08-04 00:28 ./usr/lib/R/site-library/Biobase/doc/BiobaseDevelopment.Rnw
--rw-r--r-- root/root 79071 2011-08-04 00:28 ./usr/lib/R/site-library/Biobase/doc/Qviews.pdf
--rw-r--r-- root/root 206 2011-08-04 00:28 ./usr/lib/R/site-library/Biobase/doc/HowTo.R
--rw-r--r-- root/root 267601 2011-08-04 00:28 ./usr/lib/R/site-library/Biobase/doc/BiobaseDevelopment.pdf
--rw-r--r-- root/root 220 2011-08-04 00:28 ./usr/lib/R/site-library/Biobase/doc/Bioconductor.R
--rw-r--r-- root/root 60322 2011-08-04 00:28 ./usr/lib/R/site-library/Biobase/doc/HowTo.pdf
--rw-r--r-- root/root 110288 2011-08-04 00:28 ./usr/lib/R/site-library/Biobase/doc/esApply.pdf
-drwxr-xr-x root/root 0 2011-08-04 00:28 ./usr/lib/R/site-library/Biobase/doc/legacy/
--rw-r--r-- root/root 13630 2011-08-04 00:28 ./usr/lib/R/site-library/Biobase/doc/legacy/Biobase.Rnw
--rw-r--r-- root/root 6656 2011-08-04 00:28 ./usr/lib/R/site-library/Biobase/doc/ExpressionSetIntroduction.R
--rw-r--r-- root/root 5030 2011-08-04 00:28 ./usr/lib/R/site-library/Biobase/doc/Qviews.Rnw
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+drwxr-xr-x root/root 0 2011-11-02 07:17 ./usr/lib/R/site-library/Biobase/UnitTests/
+-rw-r--r-- root/root 10497 2011-11-02 07:17 ./usr/lib/R/site-library/Biobase/UnitTests/AnnotatedDataFrame_test.R
+-rw-r--r-- root/root 318 2011-11-02 07:17 ./usr/lib/R/site-library/Biobase/UnitTests/Makefile
+-rw-r--r-- root/root 180 2011-11-02 07:17 ./usr/lib/R/site-library/Biobase/UnitTests/checkClass_test.R
+-rw-r--r-- root/root 2096 2011-11-02 07:17 ./usr/lib/R/site-library/Biobase/UnitTests/esApply_test.R
+drwxr-xr-x root/root 0 2011-11-02 07:17 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/
+drwxr-xr-x root/root 0 2011-11-02 07:17 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/2.0/
+-rw-r--r-- root/root 183 2011-11-02 07:17 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/2.0/VersionedBiobase.Rda
+-rw-r--r-- root/root 609 2011-11-02 07:17 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/2.0/SnpSet.Rda
+-rw-r--r-- root/root 555 2011-11-02 07:17 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/2.0/MultiSet.Rda
+-rw-r--r-- root/root 4822 2011-11-02 07:17 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/2.0/ExpressionSet.Rda
+-rw-r--r-- root/root 105 2011-11-02 07:17 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/2.0/Versions.Rda
+-rw-r--r-- root/root 113 2011-11-02 07:17 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/2.0/ScalarCharacter.Rda
+-rw-r--r-- root/root 146 2011-11-02 07:17 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/2.0/container.Rda
+-rw-r--r-- root/root 998 2011-11-02 07:17 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/2.0/phenoData.Rda
+-rw-r--r-- root/root 143 2011-11-02 07:17 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/2.0/Versioned.Rda
+-rw-r--r-- root/root 1014 2011-11-02 07:17 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/2.0/AnnotatedDataFrame.Rda
+-rw-r--r-- root/root 227 2011-11-02 07:17 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/2.0/aggregator.Rda
+-rw-r--r-- root/root 795 2011-11-02 07:17 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/2.0/MIAME.Rda
+-rw-r--r-- root/root 110 2011-11-02 07:17 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/2.0/VersionsNull.Rda
+-rw-r--r-- root/root 4705 2011-11-02 07:17 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/2.0/exprSet.Rda
+drwxr-xr-x root/root 0 2011-11-02 07:17 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/
+-rw-r--r-- root/root 183 2011-11-02 07:17 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/VersionedBiobase.Rda
+-rw-r--r-- root/root 1235 2011-11-02 07:17 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/SnpSet.Rda
+-rw-r--r-- root/root 167662 2011-11-02 07:17 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/golubMergeSub.rda
+-rw-r--r-- root/root 1166 2011-11-02 07:17 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/MultiSet.Rda
+-rw-r--r-- root/root 524 2011-11-02 07:17 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/SWPD.rda
+-rw-r--r-- root/root 5537 2011-11-02 07:17 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/ExpressionSet.Rda
+-rw-r--r-- root/root 105 2011-11-02 07:17 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/Versions.Rda
+-rw-r--r-- root/root 113 2011-11-02 07:17 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/ScalarCharacter.Rda
+-rw-r--r-- root/root 146 2011-11-02 07:17 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/container.Rda
+-rw-r--r-- root/root 62219 2011-11-02 07:17 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/sample.exprSet.1.rda
+-rw-r--r-- root/root 802 2011-11-02 07:17 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/NChannelSet.Rda
+-rw-r--r-- root/root 95238 2011-11-02 07:17 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/swrep.rda
+-rw-r--r-- root/root 143 2011-11-02 07:17 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/Versioned.Rda
+-rw-r--r-- root/root 62201 2011-11-02 07:17 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/eset.rda
+-rw-r--r-- root/root 92336 2011-11-02 07:17 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/sample.exprSet.rda
+-rw-r--r-- root/root 1016 2011-11-02 07:17 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/AnnotatedDataFrame.Rda
+-rw-r--r-- root/root 231 2011-11-02 07:17 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/aggregator.Rda
+-rw-r--r-- root/root 795 2011-11-02 07:17 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/MIAME.Rda
+-rw-r--r-- root/root 25005 2011-11-02 07:17 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/sample.eSet.rda
+-rw-r--r-- root/root 112 2011-11-02 07:17 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/VersionsNull.Rda
+-rw-r--r-- root/root 4704 2011-11-02 07:17 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/exprSet.Rda
+-rw-r--r-- root/root 76485 2011-11-02 07:17 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/bbsym.rda
+drwxr-xr-x root/root 0 2011-11-02 07:17 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/raw/
+-rw-r--r-- root/root 423 2011-11-02 07:17 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/raw/varMetadata.tab
+-rw-r--r-- root/root 6194 2011-11-02 07:17 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/raw/exprs.tab
+-rw-r--r-- root/root 705 2011-11-02 07:17 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/raw/pData.tab
+drwxr-xr-x root/root 0 2011-11-02 07:17 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/1.8/
+-rw-r--r-- root/root 4678 2011-11-02 07:17 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/1.8/ExpressionSet.Rda
+-rw-r--r-- root/root 943 2011-11-02 07:17 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/1.8/phenoData.Rda
+-rw-r--r-- root/root 939 2011-11-02 07:17 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/1.8/AnnotatedDataFrame.Rda
+-rw-r--r-- root/root 741 2011-11-02 07:17 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/1.8/MIAME.Rda
+-rw-r--r-- root/root 4588 2011-11-02 07:17 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/1.8/exprSet.Rda
+-rw-r--r-- root/root 2035 2011-11-02 07:17 ./usr/lib/R/site-library/Biobase/UnitTests/AssayData_test.R
+-rw-r--r-- root/root 2522 2011-11-02 07:17 ./usr/lib/R/site-library/Biobase/UnitTests/combine_test.R
+-rwxr-xr-x root/root 39 2011-11-02 07:17 ./usr/lib/R/site-library/Biobase/UnitTests/runall.sh
+-rw-r--r-- root/root 477 2011-11-02 07:17 ./usr/lib/R/site-library/Biobase/UnitTests/runalltests.R
+-rwxr-xr-x root/root 213 2011-11-02 07:17 ./usr/lib/R/site-library/Biobase/UnitTests/runfile.sh
+-rw-r--r-- root/root 951 2011-11-02 07:17 ./usr/lib/R/site-library/Biobase/UnitTests/cache_test.R
+-rw-r--r-- root/root 1907 2011-11-02 07:17 ./usr/lib/R/site-library/Biobase/UnitTests/subListExtract_test.R
+-rw-r--r-- root/root 4598 2011-11-02 07:17 ./usr/lib/R/site-library/Biobase/UnitTests/data.frame_test.R
+-rw-r--r-- root/root 1257 2011-11-02 07:17 ./usr/lib/R/site-library/Biobase/UnitTests/utilities.R
+-rw-r--r-- root/root 5015 2011-11-02 07:17 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_test.R
+-rw-r--r-- root/root 580 2011-11-02 07:17 ./usr/lib/R/site-library/Biobase/UnitTests/SnpSet_test.R
+-rw-r--r-- root/root 8167 2011-11-02 07:17 ./usr/lib/R/site-library/Biobase/UnitTests/UpdateObject_test.R
+-rw-r--r-- root/root 1515 2011-11-02 07:17 ./usr/lib/R/site-library/Biobase/UnitTests/matrix_test.R
+-rw-r--r-- root/root 2040 2011-11-02 07:17 ./usr/lib/R/site-library/Biobase/UnitTests/unsaveSetSlot_test.R
+-rw-r--r-- root/root 629 2011-11-02 07:17 ./usr/lib/R/site-library/Biobase/UnitTests/DataClasses_test.R
+-rw-r--r-- root/root 8317 2011-11-02 07:17 ./usr/lib/R/site-library/Biobase/UnitTests/NChannelSet_test.R
+-rw-r--r-- root/root 6194 2011-11-02 07:17 ./usr/lib/R/site-library/Biobase/UnitTests/ExpressionSet_test.R
+-rw-r--r-- root/root 20153 2011-11-02 07:17 ./usr/lib/R/site-library/Biobase/UnitTests/EsetSubclasses_test.R
+-rw-r--r-- root/root 403 2011-11-02 07:17 ./usr/lib/R/site-library/Biobase/UnitTests/copyEnv_test.R
+drwxr-xr-x root/root 0 2011-11-02 07:17 ./usr/lib/R/site-library/Biobase/ExpressionSet/
+drwxr-xr-x root/root 0 2011-11-02 07:17 ./usr/lib/R/site-library/Biobase/ExpressionSet/man/
+-rw-r--r-- root/root 180 2011-11-02 07:17 ./usr/lib/R/site-library/Biobase/ExpressionSet/man/@PKGNAME at .Rd
+-rw-r--r-- root/root 212 2011-11-02 07:17 ./usr/lib/R/site-library/Biobase/ExpressionSet/DESCRIPTION
+drwxr-xr-x root/root 0 2011-11-02 07:17 ./usr/share/
+drwxr-xr-x root/root 0 2011-11-02 07:17 ./usr/share/doc/
+drwxr-xr-x root/root 0 2011-11-02 07:17 ./usr/share/doc/r-bioc-biobase/
+-rw-r--r-- root/root 392 2011-11-02 07:17 ./usr/share/doc/r-bioc-biobase/README.Debian
+-rw-r--r-- root/root 380 2011-11-02 07:17 ./usr/share/doc/r-bioc-biobase/changelog.Debian.gz
+-rw-r--r-- root/root 10574 2011-11-02 07:17 ./usr/share/doc/r-bioc-biobase/copyright
+-rw-r--r-- root/root 1380 2011-10-31 23:32 ./usr/share/doc/r-bioc-biobase/NEWS.gz
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -991,7 +959,7 @@ Built successfully
│ Post Build │
└──────────────────────────────────────────────────────────────────────────────┘
-Purging /var/lib/schroot/mount/sid-powerpc-sbuild-06da03bc-0e16-4d8a-9e0a-c1b32a8b315d/build/buildd-r-bioc-biobase_2.12.2-1-powerpc-yjJauj
+Purging /var/lib/schroot/mount/sid-powerpc-sbuild-f4a79004-7092-4ac6-876c-4dae3d887d40/build/buildd-r-bioc-biobase_2.14.0-1-powerpc-2BK5S9
Not cleaning session: cloned chroot in use
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -999,18 +967,18 @@ Not cleaning session: cloned chroot in use
└──────────────────────────────────────────────────────────────────────────────┘
Architecture: powerpc
-Build-Space: 10088
-Build-Time: 33
+Build-Space: 9140
+Build-Time: 31
Distribution: sid
-Install-Time: 154
-Job: r-bioc-biobase_2.12.2-1
+Install-Time: 137
+Job: r-bioc-biobase_2.14.0-1
Package: r-bioc-biobase
-Package-Time: 221
-Source-Version: 2.12.2-1
-Space: 10088
+Package-Time: 202
+Source-Version: 2.14.0-1
+Space: 9140
Status: successful
-Version: 2.12.2-1
+Version: 2.14.0-1
────────────────────────────────────────────────────────────────────────────────
-Finished at 20110804-0028
-Build needed 00:03:41, 10088k disc space
+Finished at 20111102-0717
+Build needed 00:03:22, 9140k disc space
diff --git a/s390.log b/s390.log
index 3a0a97e..9d2d69a 100644
--- a/s390.log
+++ b/s390.log
@@ -1,4 +1,4 @@
-From buildd at zandonai.debian.org Thu Aug 04 00:26:52 2011
+From buildd at zandonai.debian.org Wed Nov 02 05:59:32 2011
Return-path: <buildd at zandonai.debian.org>
Received: from kokkonen.debian.org ([2001:41b8:202:deb:1a1a:0:52c3:4b61])
from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
@@ -6,64 +6,64 @@ Received: from kokkonen.debian.org ([2001:41b8:202:deb:1a1a:0:52c3:4b61])
EMAIL=hostmaster at kokkonen.debian.org (verified)
by grieg.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
(Exim 4.72) (envelope-from <buildd at zandonai.debian.org>)
- id 1Qolm0-0004Ls-9u
- for logs at buildd.debian.org; Thu, 04 Aug 2011 00:26:52 +0000
+ id 1RLTrI-0006qt-JG
+ for logs at buildd.debian.org; Wed, 02 Nov 2011 05:59:32 +0000
Received: from zandonai.debian.org ([80.245.147.46])
from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
CN=zandonai.debian.org,
EMAIL=hostmaster at zandonai.debian.org (verified)
by kokkonen.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
(Exim 4.72) (envelope-from <buildd at zandonai.debian.org>)
- id 1Qollz-0004It-Ah; Thu, 04 Aug 2011 00:26:51 +0000
+ id 1RLTrH-0004MY-Lt; Wed, 02 Nov 2011 05:59:31 +0000
Received: from buildd by zandonai.debian.org with local (Exim 4.72)
(envelope-from <buildd at zandonai.debian.org>)
- id 1Qolly-0005fY-NK; Thu, 04 Aug 2011 00:26:50 +0000
-Message-Id: <E1Qolly-0005fY-NK at zandonai.debian.org>
+ id 1RLTrH-0005ol-Bd; Wed, 02 Nov 2011 05:59:31 +0000
+Message-Id: <E1RLTrH-0005ol-Bd at zandonai.debian.org>
MIME-Version: 1.0
Content-Transfer-Encoding: binary
X-Mailer: MIME::Lite 3.027 (F2.77; B3.08; Q3.08)
-Date: Thu, 4 Aug 2011 00:26:50 +0000
+Date: Wed, 2 Nov 2011 05:59:31 +0000
From: buildd on zandonai <buildd at zandonai.debian.org>
To: phil+buildd at philkern.de,logs at buildd.debian.org
-Subject: Log for successful build of r-bioc-biobase_2.12.2-1 on s390 (dist=sid)
+Subject: Log for successful build of r-bioc-biobase_2.14.0-1 on s390 (dist=sid)
Key-Id: 2D941D26
Delivered-To: logs at buildd.debian.org
sbuild (Debian sbuild) 0.61.0 (23 Feb 2011) on zandonai.debian.org
╔══════════════════════════════════════════════════════════════════════════════╗
-║ r-bioc-biobase 2.12.2-1 (s390) 04 Aug 2011 00:24 ║
+║ r-bioc-biobase 2.14.0-1 (s390) 02 Nov 2011 05:57 ║
╚══════════════════════════════════════════════════════════════════════════════╝
Package: r-bioc-biobase
-Version: 2.12.2-1
-Source Version: 2.12.2-1
+Version: 2.14.0-1
+Source Version: 2.14.0-1
Architecture: s390
Get:1 http://ftp.de.debian.org unstable InRelease [146 kB]
-Get:2 http://incoming.debian.org unstable InRelease [146 kB]
-Get:3 http://ftp.de.debian.org unstable/main Sources [5403 kB]
+Get:2 http://ftp.de.debian.org unstable/main Sources [5884 kB]
+Get:3 http://incoming.debian.org unstable InRelease [146 kB]
Ign http://incoming.debian.org InRelease
Get:4 http://incoming.debian.org Release.gpg [836 B]
-Get:5 http://incoming.debian.org unstable/main Sources [5403 kB]
-Get:6 http://ftp.de.debian.org unstable/contrib Sources [51.3 kB]
-Get:7 http://ftp.de.debian.org unstable/non-free Sources [96.3 kB]
-Get:8 http://ftp.de.debian.org unstable/main s390 Packages [7377 kB]
-Get:9 http://ftp.de.debian.org unstable/contrib s390 Packages [52.4 kB]
+Get:5 http://incoming.debian.org unstable/main Sources [5884 kB]
+Get:6 http://ftp.de.debian.org unstable/contrib Sources [56.9 kB]
+Get:7 http://ftp.de.debian.org unstable/non-free Sources [104 kB]
+Get:8 http://ftp.de.debian.org unstable/main s390 Packages [7614 kB]
+Get:9 http://ftp.de.debian.org unstable/contrib s390 Packages [54.5 kB]
Ign http://ftp.de.debian.org unstable/contrib TranslationIndex
Get:10 http://ftp.de.debian.org unstable/main TranslationIndex [2045 B]
Ign http://ftp.de.debian.org unstable/contrib Translation-en
-Get:11 http://incoming.debian.org unstable/contrib Sources [51.3 kB]
-Get:12 http://incoming.debian.org unstable/non-free Sources [96.3 kB]
-Get:13 http://incoming.debian.org unstable/main s390 Packages [7377 kB]
-Get:14 http://incoming.debian.org unstable/contrib s390 Packages [52.4 kB]
+Get:11 http://incoming.debian.org unstable/contrib Sources [56.9 kB]
+Get:12 http://incoming.debian.org unstable/non-free Sources [104 kB]
+Get:13 http://incoming.debian.org unstable/main s390 Packages [7614 kB]
+Get:14 http://incoming.debian.org unstable/contrib s390 Packages [54.5 kB]
Ign http://incoming.debian.org unstable/contrib TranslationIndex
Get:15 http://incoming.debian.org unstable/main TranslationIndex [2045 B]
Get:16 http://incoming.debian.org Release [1604 B]
-Get:17 http://incoming.debian.org Sources [30.7 kB]
-Get:18 http://incoming.debian.org Packages [218 kB]
+Get:17 http://incoming.debian.org Sources [49.2 kB]
+Get:18 http://incoming.debian.org Packages [352 kB]
Ign http://incoming.debian.org unstable/contrib Translation-en
Ign http://incoming.debian.org Translation-en
-Fetched 26.5 MB in 24s (1094 kB/s)
+Fetched 28.1 MB in 29s (968 kB/s)
Reading package lists...
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -84,11 +84,11 @@ Building dependency tree...
Reading state information...
NOTICE: 'r-bioc-biobase' packaging is maintained in the 'Git' version control system at:
git://git.debian.org/git/debian-med/r-bioc-biobase.git
-Need to get 2229 kB of source archives.
-Get:1 http://incoming.debian.org/buildd-unstable/ r-bioc-biobase 2.12.2-1 (dsc) [1944 B]
-Get:2 http://incoming.debian.org/buildd-unstable/ r-bioc-biobase 2.12.2-1 (tar) [2222 kB]
-Get:3 http://incoming.debian.org/buildd-unstable/ r-bioc-biobase 2.12.2-1 (diff) [5417 B]
-Fetched 2229 kB in 4s (544 kB/s)
+Need to get 1934 kB of source archives.
+Get:1 http://incoming.debian.org/buildd-unstable/ r-bioc-biobase 2.14.0-1 (dsc) [2004 B]
+Get:2 http://incoming.debian.org/buildd-unstable/ r-bioc-biobase 2.14.0-1 (tar) [1926 kB]
+Get:3 http://incoming.debian.org/buildd-unstable/ r-bioc-biobase 2.14.0-1 (diff) [5645 B]
+Fetched 1934 kB in 4s (402 kB/s)
Download complete and in download only mode
Check arch
@@ -102,84 +102,88 @@ Check arch
Build-Depends: build-essential, fakeroot
Checking for already installed dependencies...
build-essential: already installed (11.5)
-fakeroot: already installed (1.16-1)
+fakeroot: already installed (1.18.1-1)
Checking for dependency conflicts...
Installing positive dependencies:
Reading package lists...
Building dependency tree...
Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 12 not upgraded.
+0 upgraded, 0 newly installed, 0 to remove and 40 not upgraded.
Removing negative dependencies:
Reading package lists...
Building dependency tree...
Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 12 not upgraded.
+0 upgraded, 0 newly installed, 0 to remove and 40 not upgraded.
Checking correctness of dependencies...
┌──────────────────────────────────────────────────────────────────────────────┐
│ Install r-bioc-biobase build dependencies (internal resolver) │
└──────────────────────────────────────────────────────────────────────────────┘
-Build-Depends: base-files, base-passwd, bash, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, ncurses-base, ncurses-bin, perl-base, sed, login, sysvinit-utils, sysvinit, tar, bsdutils, mount, util-linux, libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), cdbs, debhelper (>= 8), r-base-dev
+Build-Depends: base-files, base-passwd, bash, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, ncurses-base, ncurses-bin, perl-base, sed, login, sysvinit-utils, sysvinit, tar, bsdutils, mount, util-linux, libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), cdbs, debhelper (>= 8), r-base-dev (>= 2.10)
Checking for already installed dependencies...
base-files: already installed (6.5)
base-passwd: already installed (3.5.23)
bash: already installed (4.1-3)
-coreutils: already installed (8.5-1)
-dash: already installed (0.5.5.1-7.4)
-debianutils: already installed (4.0.2)
+coreutils: already installed (8.13-3)
+dash: already installed (0.5.7-2)
+debianutils: already installed (4.0.3)
diffutils: already installed (1:3.0-1)
-dpkg: already installed (1.16.0.3)
-e2fsprogs: already installed (1.42~WIP-2011-07-02-1)
+dpkg: already installed (1.16.1)
+e2fsprogs: already installed (1.42~WIP-2011-10-05-2)
findutils: already installed (4.4.2-1+b1)
-grep: already installed (2.9-1)
+grep: already installed (2.9-2)
gzip: already installed (1.4-1)
hostname: already installed (3.06)
-ncurses-base: already installed (5.9-1)
-ncurses-bin: already installed (5.9-1)
-perl-base: already installed (5.12.4-2)
+ncurses-base: already installed (5.9-2)
+ncurses-bin: already installed (5.9-2)
+perl-base: already installed (5.12.4-5)
sed: already installed (4.2.1-9)
login: already installed (1:4.1.4.2+svn3283-3)
sysvinit-utils: already installed (2.88dsf-13.11)
sysvinit: already installed (2.88dsf-13.11)
-tar: already installed (1.25-3)
-bsdutils: already installed (1:2.19.1-4)
-mount: already installed (2.19.1-4)
-util-linux: already installed (2.19.1-4)
-libc6-dev: already installed (2.13-11)
-gcc: already installed (4:4.6.1-2 >= 4:4.4.3 is satisfied)
-g++: already installed (4:4.6.1-2 >= 4:4.4.3 is satisfied)
+tar: already installed (1.26-2)
+bsdutils: already installed (1:2.19.1-5)
+mount: already installed (2.19.1-5)
+util-linux: already installed (2.19.1-5)
+libc6-dev: already installed (2.13-21)
+gcc: already installed (4:4.6.1-3 >= 4:4.4.3 is satisfied)
+g++: already installed (4:4.6.1-3 >= 4:4.4.3 is satisfied)
make: already installed (3.81-8.1)
-dpkg-dev: already installed (1.16.0.3 >= 1.13.5 is satisfied)
+dpkg-dev: already installed (1.16.1 >= 1.13.5 is satisfied)
cdbs: missing
debhelper: missing
-Using default version 8.9.3
+Using default version 8.9.8
r-base-dev: missing
+Using default version 2.14.0-1
Checking for dependency conflicts...
Installing positive dependencies: cdbs debhelper r-base-dev
Reading package lists...
Building dependency tree...
Reading state information...
The following extra packages will be installed:
- bsdmainutils dpatch file fontconfig fontconfig-config gettext gettext-base
- gfortran gfortran-4.6 groff-base html2text intltool-debian libblas-dev
- libblas3gf libbz2-dev libcairo2 libcroco3 libdatrie1 libexpat1
- libfontconfig1 libfreetype6 libgfortran3 libglib2.0-0 libice6 libjpeg62
- libjpeg8 libjpeg8-dev liblapack-dev liblapack3gf libmagic1 libncurses5-dev
- libpango1.0-0 libpaper-utils libpaper1 libpcre3 libpcre3-dev libpcrecpp0
- libpipeline1 libpixman-1-0 libpng12-0 libpng12-dev libreadline-dev
- libreadline6-dev libsm6 libthai-data libthai0 libtiff4 libunistring0
- libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6
- libxext6 libxft2 libxml2 libxrender1 libxss1 libxt6 man-db po-debconf
- r-base-core tcl8.5 tk8.5 ttf-dejavu-core ucf unzip x11-common xdg-utils zip
- zlib1g-dev
+ bsdmainutils cpp-4.6 dpatch file fontconfig fontconfig-config g++-4.6
+ gcc-4.6 gcc-4.6-base gettext gettext-base gfortran gfortran-4.6 groff-base
+ html2text intltool-debian libblas-dev libblas3gf libbz2-dev libcairo2
+ libcroco3 libdatrie1 libexpat1 libfontconfig1 libfreetype6 libgcc1
+ libgfortran3 libglib2.0-0 libgomp1 libice6 libjpeg8 libjpeg8-dev
+ liblapack-dev liblapack3gf liblzma5 libmagic1 libncurses5-dev libpango1.0-0
+ libpaper-utils libpaper1 libpcre3 libpcre3-dev libpcrecpp0 libpipeline1
+ libpixman-1-0 libpng12-0 libpng12-dev libreadline-dev libreadline6
+ libreadline6-dev libsm6 libstdc++6 libstdc++6-4.6-dev libthai-data libthai0
+ libtiff4 libtinfo-dev libunistring0 libx11-6 libx11-data libxau6
+ libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2
+ libxrender1 libxss1 libxt6 man-db po-debconf r-base-core tcl8.5 tk8.5
+ ttf-dejavu-core ucf unzip x11-common xdg-utils zip zlib1g-dev
Suggested packages:
- wamerican wordlist whois vacation devscripts dh-make curl defoma gettext-doc
- gfortran-multilib gfortran-doc gfortran-4.6-multilib gfortran-4.6-doc
- libgfortran3-dbg groff ncurses-doc ttf-baekmuk ttf-arphic-gbsn00lp
- ttf-arphic-bsmi00lp ttf-arphic-gkai00mp ttf-arphic-bkai00mp less www-browser
- libmail-box-perl r-doc-info r-doc-pdf r-mathlib r-base-html tclreadline
- gvfs-bin
+ wamerican wordlist whois vacation devscripts gcc-4.6-locales dh-make curl
+ defoma g++-4.6-multilib gcc-4.6-doc libstdc++6-4.6-dbg gcc-4.6-multilib
+ libmudflap0-4.6-dev libgcc1-dbg libgomp1-dbg libquadmath-dbg libmudflap0-dbg
+ gettext-doc gfortran-multilib gfortran-doc gfortran-4.6-multilib
+ gfortran-4.6-doc libgfortran3-dbg groff ncurses-doc ttf-baekmuk
+ ttf-arphic-gbsn00lp ttf-arphic-bsmi00lp ttf-arphic-gkai00mp
+ ttf-arphic-bkai00mp libstdc++6-4.6-doc less www-browser libmail-box-perl
+ r-doc-info r-doc-pdf r-mathlib r-base-html tclreadline gvfs-bin
Recommended packages:
autotools-dev patchutils autopoint libglib2.0-data shared-mime-info
x-ttcidfont-conf xml-core libmail-sendmail-perl r-recommended r-doc-html
@@ -188,286 +192,338 @@ The following NEW packages will be installed:
bsdmainutils cdbs debhelper dpatch file fontconfig fontconfig-config gettext
gettext-base gfortran gfortran-4.6 groff-base html2text intltool-debian
libblas-dev libblas3gf libbz2-dev libcairo2 libcroco3 libdatrie1 libexpat1
- libfontconfig1 libfreetype6 libgfortran3 libglib2.0-0 libice6 libjpeg62
- libjpeg8 libjpeg8-dev liblapack-dev liblapack3gf libmagic1 libncurses5-dev
+ libfontconfig1 libfreetype6 libgfortran3 libglib2.0-0 libice6 libjpeg8
+ libjpeg8-dev liblapack-dev liblapack3gf liblzma5 libmagic1 libncurses5-dev
libpango1.0-0 libpaper-utils libpaper1 libpcre3 libpcre3-dev libpcrecpp0
libpipeline1 libpixman-1-0 libpng12-0 libpng12-dev libreadline-dev
- libreadline6-dev libsm6 libthai-data libthai0 libtiff4 libunistring0
- libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6
- libxext6 libxft2 libxml2 libxrender1 libxss1 libxt6 man-db po-debconf
- r-base-core r-base-dev tcl8.5 tk8.5 ttf-dejavu-core ucf unzip x11-common
- xdg-utils zip zlib1g-dev
-0 upgraded, 76 newly installed, 0 to remove and 12 not upgraded.
-Need to get 46.1 MB of archives.
-After this operation, 118 MB of additional disk space will be used.
-Get:1 http://ftp.de.debian.org/debian/ unstable/main libpipeline1 s390 1.2.0-3 [39.0 kB]
-Get:2 http://ftp.de.debian.org/debian/ unstable/main libdatrie1 s390 0.2.4-3 [28.5 kB]
-Get:3 http://ftp.de.debian.org/debian/ unstable/main libexpat1 s390 2.0.1-7 [137 kB]
-Get:4 http://ftp.de.debian.org/debian/ unstable/main libfreetype6 s390 2.4.4-2 [412 kB]
-Get:5 http://ftp.de.debian.org/debian/ unstable/main ucf all 3.0025+nmu2 [70.6 kB]
-Get:6 http://ftp.de.debian.org/debian/ unstable/main ttf-dejavu-core all 2.33-1 [1550 kB]
-Get:7 http://ftp.de.debian.org/debian/ unstable/main fontconfig-config all 2.8.0-3 [221 kB]
-Get:8 http://ftp.de.debian.org/debian/ unstable/main libfontconfig1 s390 2.8.0-3 [286 kB]
-Get:9 http://ftp.de.debian.org/debian/ unstable/main libgfortran3 s390 4.6.1-5 [297 kB]
-Get:10 http://ftp.de.debian.org/debian/ unstable/main x11-common all 1:7.6+7 [275 kB]
-Get:11 http://ftp.de.debian.org/debian/ unstable/main libice6 s390 2:1.0.7-2 [57.1 kB]
-Get:12 http://ftp.de.debian.org/debian/ unstable/main libpixman-1-0 s390 0.22.2-1 [353 kB]
-Get:13 http://ftp.de.debian.org/debian/ unstable/main libpng12-0 s390 1.2.46-3 [191 kB]
-Get:14 http://ftp.de.debian.org/debian/ unstable/main libxau6 s390 1:1.0.6-3 [17.0 kB]
-Get:15 http://ftp.de.debian.org/debian/ unstable/main libxdmcp6 s390 1:1.1.0-3 [23.7 kB]
-Get:16 http://ftp.de.debian.org/debian/ unstable/main libxcb1 s390 1.7-3 [48.4 kB]
-Get:17 http://ftp.de.debian.org/debian/ unstable/main libx11-data all 2:1.4.4-1 [183 kB]
-Get:18 http://ftp.de.debian.org/debian/ unstable/main libx11-6 s390 2:1.4.4-1 [892 kB]
-Get:19 http://ftp.de.debian.org/debian/ unstable/main libxcb-render0 s390 1.7-3 [17.0 kB]
-Get:20 http://ftp.de.debian.org/debian/ unstable/main libxcb-shm0 s390 1.7-3 [9680 B]
-Get:21 http://ftp.de.debian.org/debian/ unstable/main libxrender1 s390 1:0.9.6-2 [31.2 kB]
-Get:22 http://ftp.de.debian.org/debian/ unstable/main libcairo2 s390 1.10.2-6.1 [956 kB]
-Get:23 http://ftp.de.debian.org/debian/ unstable/main libpcre3 s390 8.12-3 [262 kB]
-Get:24 http://ftp.de.debian.org/debian/ unstable/main libglib2.0-0 s390 2.28.6-1 [1639 kB]
-Get:25 http://ftp.de.debian.org/debian/ unstable/main libthai-data all 0.1.15-2 [201 kB]
-Get:26 http://ftp.de.debian.org/debian/ unstable/main libthai0 s390 0.1.15-2 [44.0 kB]
-Get:27 http://ftp.de.debian.org/debian/ unstable/main libxft2 s390 2.2.0-3 [60.3 kB]
-Get:28 http://ftp.de.debian.org/debian/ unstable/main fontconfig s390 2.8.0-3 [335 kB]
-Get:29 http://ftp.de.debian.org/debian/ unstable/main libpango1.0-0 s390 1.28.4-2 [447 kB]
-Get:30 http://ftp.de.debian.org/debian/ unstable/main libsm6 s390 2:1.2.0-2 [30.3 kB]
-Get:31 http://ftp.de.debian.org/debian/ unstable/main libxext6 s390 2:1.3.0-3 [52.3 kB]
-Get:32 http://ftp.de.debian.org/debian/ unstable/main libxt6 s390 1:1.1.1-2 [206 kB]
-Get:33 http://ftp.de.debian.org/debian/ unstable/main bsdmainutils s390 8.2.3 [209 kB]
-Get:34 http://ftp.de.debian.org/debian/ unstable/main groff-base s390 1.21-6 [1156 kB]
-Get:35 http://ftp.de.debian.org/debian/ unstable/main man-db s390 2.6.0.2-2 [1029 kB]
-Get:36 http://ftp.de.debian.org/debian/ unstable/main libmagic1 s390 5.04-5+b1 [243 kB]
-Get:37 http://ftp.de.debian.org/debian/ unstable/main file s390 5.04-5+b1 [50.1 kB]
-Get:38 http://ftp.de.debian.org/debian/ unstable/main gettext-base s390 0.18.1.1-3 [142 kB]
-Get:39 http://ftp.de.debian.org/debian/ unstable/main libxml2 s390 2.7.8.dfsg-4 [879 kB]
-Get:40 http://ftp.de.debian.org/debian/ unstable/main html2text s390 1.3.2a-15 [101 kB]
-Get:41 http://ftp.de.debian.org/debian/ unstable/main libcroco3 s390 0.6.2-1 [128 kB]
-Get:42 http://ftp.de.debian.org/debian/ unstable/main libunistring0 s390 0.9.3-4 [431 kB]
-Get:43 http://ftp.de.debian.org/debian/ unstable/main gettext s390 0.18.1.1-3 [2068 kB]
-Get:44 http://ftp.de.debian.org/debian/ unstable/main intltool-debian all 0.35.0+20060710.1 [30.8 kB]
-Get:45 http://ftp.de.debian.org/debian/ unstable/main po-debconf all 1.0.16+nmu1 [223 kB]
-Get:46 http://ftp.de.debian.org/debian/ unstable/main debhelper all 8.9.3 [561 kB]
-Get:47 http://ftp.de.debian.org/debian/ unstable/main cdbs all 0.4.96 [75.8 kB]
-Get:48 http://ftp.de.debian.org/debian/ unstable/main dpatch all 2.0.31 [92.3 kB]
-Get:49 http://ftp.de.debian.org/debian/ unstable/main gfortran-4.6 s390 4.6.1-5 [4512 kB]
-Get:50 http://ftp.de.debian.org/debian/ unstable/main gfortran s390 4:4.6.1-2 [1126 B]
-Get:51 http://ftp.de.debian.org/debian/ unstable/main libblas3gf s390 1.2-8 [192 kB]
-Get:52 http://ftp.de.debian.org/debian/ unstable/main libblas-dev s390 1.2-8 [206 kB]
-Get:53 http://ftp.de.debian.org/debian/ unstable/main libbz2-dev s390 1.0.5-6 [36.9 kB]
-Get:54 http://ftp.de.debian.org/debian/ unstable/main libjpeg62 s390 6b1-2 [96.1 kB]
-Get:55 http://ftp.de.debian.org/debian/ unstable/main libjpeg8 s390 8c-2 [139 kB]
-Get:56 http://ftp.de.debian.org/debian/ unstable/main libjpeg8-dev s390 8c-2 [241 kB]
-Get:57 http://ftp.de.debian.org/debian/ unstable/main liblapack3gf s390 3.3.0-4 [1661 kB]
-Get:58 http://ftp.de.debian.org/debian/ unstable/main liblapack-dev s390 3.3.0-4 [1859 kB]
-Get:59 http://ftp.de.debian.org/debian/ unstable/main libncurses5-dev s390 5.9-1 [504 kB]
-Get:60 http://ftp.de.debian.org/debian/ unstable/main libpaper1 s390 1.1.24+nmu1 [21.9 kB]
-Get:61 http://ftp.de.debian.org/debian/ unstable/main libpaper-utils s390 1.1.24+nmu1 [18.4 kB]
-Get:62 http://ftp.de.debian.org/debian/ unstable/main libpcrecpp0 s390 8.12-3 [113 kB]
-Get:63 http://ftp.de.debian.org/debian/ unstable/main libpcre3-dev s390 8.12-3 [308 kB]
-Get:64 http://ftp.de.debian.org/debian/ unstable/main zlib1g-dev s390 1:1.2.3.4.dfsg-3 [193 kB]
-Get:65 http://ftp.de.debian.org/debian/ unstable/main libpng12-dev s390 1.2.46-3 [268 kB]
-Get:66 http://ftp.de.debian.org/debian/ unstable/main libreadline6-dev s390 6.2-2 [257 kB]
-Get:67 http://ftp.de.debian.org/debian/ unstable/main libreadline-dev s390 6.2-2 [878 B]
-Get:68 http://ftp.de.debian.org/debian/ unstable/main libtiff4 s390 3.9.5-1 [206 kB]
-Get:69 http://ftp.de.debian.org/debian/ unstable/main libxss1 s390 1:1.2.1-1 [16.5 kB]
-Get:70 http://ftp.de.debian.org/debian/ unstable/main zip s390 3.0-4 [347 kB]
-Get:71 http://ftp.de.debian.org/debian/ unstable/main unzip s390 6.0-5 [195 kB]
-Get:72 http://ftp.de.debian.org/debian/ unstable/main xdg-utils all 1.1.0~rc1-2 [70.2 kB]
-Get:73 http://ftp.de.debian.org/debian/ unstable/main tcl8.5 s390 8.5.10-1 [1651 kB]
-Get:74 http://ftp.de.debian.org/debian/ unstable/main tk8.5 s390 8.5.10-1 [1198 kB]
-Get:75 http://ftp.de.debian.org/debian/ unstable/main r-base-core s390 2.13.1-1 [15.0 MB]
-Get:76 http://ftp.de.debian.org/debian/ unstable/main r-base-dev all 2.13.1-1 [3490 B]
+ libreadline6-dev libsm6 libthai-data libthai0 libtiff4 libtinfo-dev
+ libunistring0 libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0
+ libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxrender1 libxss1 libxt6 man-db
+ po-debconf r-base-core r-base-dev tcl8.5 tk8.5 ttf-dejavu-core ucf unzip
+ x11-common xdg-utils zip zlib1g-dev
+The following packages will be upgraded:
+ cpp-4.6 g++-4.6 gcc-4.6 gcc-4.6-base libgcc1 libgomp1 libreadline6
+ libstdc++6 libstdc++6-4.6-dev
+9 upgraded, 77 newly installed, 0 to remove and 31 not upgraded.
+Need to get 66.8 MB of archives.
+After this operation, 115 MB of additional disk space will be used.
+Get:1 http://ftp.de.debian.org/debian/ unstable/main libreadline6 s390 6.2-7 [174 kB]
+Get:2 http://ftp.de.debian.org/debian/ unstable/main libgomp1 s390 4.6.2-3 [30.4 kB]
+Get:3 http://ftp.de.debian.org/debian/ unstable/main gcc-4.6-base s390 4.6.2-3 [137 kB]
+Get:4 http://ftp.de.debian.org/debian/ unstable/main libgcc1 s390 1:4.6.2-3 [31.2 kB]
+Get:5 http://ftp.de.debian.org/debian/ unstable/main cpp-4.6 s390 4.6.2-3 [3851 kB]
+Get:6 http://ftp.de.debian.org/debian/ unstable/main libstdc++6-4.6-dev s390 4.6.2-3 [1675 kB]
+Get:7 http://ftp.de.debian.org/debian/ unstable/main g++-4.6 s390 4.6.2-3 [5885 kB]
+Get:8 http://ftp.de.debian.org/debian/ unstable/main gcc-4.6 s390 4.6.2-3 [4159 kB]
+Get:9 http://ftp.de.debian.org/debian/ unstable/main libstdc++6 s390 4.6.2-3 [361 kB]
+Get:10 http://ftp.de.debian.org/debian/ unstable/main libpipeline1 s390 1.2.0-4 [38.9 kB]
+Get:11 http://ftp.de.debian.org/debian/ unstable/main liblzma5 s390 5.1.1alpha+20110809-3 [208 kB]
+Get:12 http://ftp.de.debian.org/debian/ unstable/main libpcre3 s390 8.12-4 [228 kB]
+Get:13 http://ftp.de.debian.org/debian/ unstable/main libglib2.0-0 s390 2.28.8-1 [1681 kB]
+Get:14 http://ftp.de.debian.org/debian/ unstable/main libxml2 s390 2.7.8.dfsg-5 [879 kB]
+Get:15 http://ftp.de.debian.org/debian/ unstable/main libcroco3 s390 0.6.2-2 [122 kB]
+Get:16 http://ftp.de.debian.org/debian/ unstable/main libdatrie1 s390 0.2.4-3 [28.5 kB]
+Get:17 http://ftp.de.debian.org/debian/ unstable/main libexpat1 s390 2.0.1-7.1 [137 kB]
+Get:18 http://ftp.de.debian.org/debian/ unstable/main libfreetype6 s390 2.4.7-2 [436 kB]
+Get:19 http://ftp.de.debian.org/debian/ unstable/main ucf all 3.0025+nmu2 [70.6 kB]
+Get:20 http://ftp.de.debian.org/debian/ unstable/main ttf-dejavu-core all 2.33-2 [1552 kB]
+Get:21 http://ftp.de.debian.org/debian/ unstable/main fontconfig-config all 2.8.0-3 [221 kB]
+Get:22 http://ftp.de.debian.org/debian/ unstable/main libfontconfig1 s390 2.8.0-3 [286 kB]
+Get:23 http://ftp.de.debian.org/debian/ unstable/main libgfortran3 s390 4.6.2-3 [296 kB]
+Get:24 http://ftp.de.debian.org/debian/ unstable/main x11-common all 1:7.6+9 [276 kB]
+Get:25 http://ftp.de.debian.org/debian/ unstable/main libice6 s390 2:1.0.7-2 [57.1 kB]
+Get:26 http://ftp.de.debian.org/debian/ unstable/main libpixman-1-0 s390 0.23.8-1 [378 kB]
+Get:27 http://ftp.de.debian.org/debian/ unstable/main libpng12-0 s390 1.2.46-3 [191 kB]
+Get:28 http://ftp.de.debian.org/debian/ unstable/main libxau6 s390 1:1.0.6-3 [17.0 kB]
+Get:29 http://ftp.de.debian.org/debian/ unstable/main libxdmcp6 s390 1:1.1.0-3 [23.7 kB]
+Get:30 http://ftp.de.debian.org/debian/ unstable/main libxcb1 s390 1.7-3 [48.4 kB]
+Get:31 http://ftp.de.debian.org/debian/ unstable/main libx11-data all 2:1.4.4-2 [183 kB]
+Get:32 http://ftp.de.debian.org/debian/ unstable/main libx11-6 s390 2:1.4.4-2 [892 kB]
+Get:33 http://ftp.de.debian.org/debian/ unstable/main libxcb-render0 s390 1.7-3 [17.0 kB]
+Get:34 http://ftp.de.debian.org/debian/ unstable/main libxcb-shm0 s390 1.7-3 [9680 B]
+Get:35 http://ftp.de.debian.org/debian/ unstable/main libxrender1 s390 1:0.9.6-2 [31.2 kB]
+Get:36 http://ftp.de.debian.org/debian/ unstable/main libcairo2 s390 1.10.2-6.1 [956 kB]
+Get:37 http://ftp.de.debian.org/debian/ unstable/main libthai-data all 0.1.15-2 [201 kB]
+Get:38 http://ftp.de.debian.org/debian/ unstable/main libthai0 s390 0.1.15-2 [44.0 kB]
+Get:39 http://ftp.de.debian.org/debian/ unstable/main libxft2 s390 2.2.0-3 [60.3 kB]
+Get:40 http://ftp.de.debian.org/debian/ unstable/main fontconfig s390 2.8.0-3 [335 kB]
+Get:41 http://ftp.de.debian.org/debian/ unstable/main libpango1.0-0 s390 1.29.4-2 [465 kB]
+Get:42 http://ftp.de.debian.org/debian/ unstable/main libpcrecpp0 s390 8.12-4 [114 kB]
+Get:43 http://ftp.de.debian.org/debian/ unstable/main libsm6 s390 2:1.2.0-2 [30.3 kB]
+Get:44 http://ftp.de.debian.org/debian/ unstable/main libjpeg8 s390 8c-2 [139 kB]
+Get:45 http://ftp.de.debian.org/debian/ unstable/main libtiff4 s390 3.9.5-2 [209 kB]
+Get:46 http://ftp.de.debian.org/debian/ unstable/main libunistring0 s390 0.9.3-5 [433 kB]
+Get:47 http://ftp.de.debian.org/debian/ unstable/main libxext6 s390 2:1.3.0-3 [52.3 kB]
+Get:48 http://ftp.de.debian.org/debian/ unstable/main libxss1 s390 1:1.2.1-2 [16.8 kB]
+Get:49 http://ftp.de.debian.org/debian/ unstable/main libxt6 s390 1:1.1.1-2 [206 kB]
+Get:50 http://ftp.de.debian.org/debian/ unstable/main bsdmainutils s390 8.2.3 [209 kB]
+Get:51 http://ftp.de.debian.org/debian/ unstable/main groff-base s390 1.21-6 [1156 kB]
+Get:52 http://ftp.de.debian.org/debian/ unstable/main man-db s390 2.6.0.2-2 [1029 kB]
+Get:53 http://ftp.de.debian.org/debian/ unstable/main libmagic1 s390 5.09-2 [257 kB]
+Get:54 http://ftp.de.debian.org/debian/ unstable/main file s390 5.09-2 [52.6 kB]
+Get:55 http://ftp.de.debian.org/debian/ unstable/main gettext-base s390 0.18.1.1-5 [143 kB]
+Get:56 http://ftp.de.debian.org/debian/ unstable/main cdbs all 0.4.99 [77.1 kB]
+Get:57 http://ftp.de.debian.org/debian/ unstable/main html2text s390 1.3.2a-15 [101 kB]
+Get:58 http://ftp.de.debian.org/debian/ unstable/main gettext s390 0.18.1.1-5 [2073 kB]
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+Get:60 http://ftp.de.debian.org/debian/ unstable/main po-debconf all 1.0.16+nmu1 [223 kB]
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+Get:62 http://ftp.de.debian.org/debian/ unstable/main dpatch all 2.0.33 [95.9 kB]
+Get:63 http://ftp.de.debian.org/debian/ unstable/main gfortran-4.6 s390 4.6.2-3 [4515 kB]
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+Get:65 http://ftp.de.debian.org/debian/ unstable/main libblas3gf s390 1.2.20110419-2 [191 kB]
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+Get:69 http://ftp.de.debian.org/debian/ unstable/main liblapack3gf s390 3.3.1-1 [1720 kB]
+Get:70 http://ftp.de.debian.org/debian/ unstable/main liblapack-dev s390 3.3.1-1 [1920 kB]
+Get:71 http://ftp.de.debian.org/debian/ unstable/main libtinfo-dev s390 5.9-2 [83.3 kB]
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+Get:73 http://ftp.de.debian.org/debian/ unstable/main libpaper1 s390 1.1.24+nmu1 [21.9 kB]
+Get:74 http://ftp.de.debian.org/debian/ unstable/main libpaper-utils s390 1.1.24+nmu1 [18.4 kB]
+Get:75 http://ftp.de.debian.org/debian/ unstable/main libpcre3-dev s390 8.12-4 [308 kB]
+Get:76 http://ftp.de.debian.org/debian/ unstable/main zlib1g-dev s390 1:1.2.3.4.dfsg-3 [193 kB]
+Get:77 http://ftp.de.debian.org/debian/ unstable/main libpng12-dev s390 1.2.46-3 [268 kB]
+Get:78 http://ftp.de.debian.org/debian/ unstable/main libreadline6-dev s390 6.2-7 [258 kB]
+Get:79 http://ftp.de.debian.org/debian/ unstable/main libreadline-dev s390 6.2-7 [886 B]
+Get:80 http://ftp.de.debian.org/debian/ unstable/main zip s390 3.0-4 [347 kB]
+Get:81 http://ftp.de.debian.org/debian/ unstable/main unzip s390 6.0-5 [195 kB]
+Get:82 http://ftp.de.debian.org/debian/ unstable/main xdg-utils all 1.1.0~rc1-2 [70.2 kB]
+Get:83 http://ftp.de.debian.org/debian/ unstable/main tcl8.5 s390 8.5.10-1 [1651 kB]
+Get:84 http://ftp.de.debian.org/debian/ unstable/main tk8.5 s390 8.5.10-1 [1198 kB]
+Get:85 http://ftp.de.debian.org/debian/ unstable/main r-base-core s390 2.14.0-1 [19.1 MB]
+Get:86 http://ftp.de.debian.org/debian/ unstable/main r-base-dev all 2.14.0-1 [3488 B]
debconf: delaying package configuration, since apt-utils is not installed
-Fetched 46.1 MB in 13s (3507 kB/s)
-Selecting previously deselected package libpipeline1.
-(Reading database ... 10583 files and directories currently installed.)
-Unpacking libpipeline1 (from .../libpipeline1_1.2.0-3_s390.deb) ...
-Selecting previously deselected package libdatrie1.
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+(Reading database ... 10631 files and directories currently installed.)
+Preparing to replace libreadline6 6.2-6 (using .../libreadline6_6.2-7_s390.deb) ...
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+(Reading database ... 10631 files and directories currently installed.)
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+Unpacking replacement gcc-4.6-base ...
+Setting up gcc-4.6-base (4.6.2-3) ...
+(Reading database ... 10632 files and directories currently installed.)
+Preparing to replace libgcc1 1:4.6.1-13 (using .../libgcc1_1%3a4.6.2-3_s390.deb) ...
+Unpacking replacement libgcc1 ...
+Setting up libgcc1 (1:4.6.2-3) ...
+(Reading database ... 10632 files and directories currently installed.)
+Preparing to replace cpp-4.6 4.6.1-13 (using .../cpp-4.6_4.6.2-3_s390.deb) ...
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+Unpacking replacement libstdc++6-4.6-dev ...
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+Unpacking replacement g++-4.6 ...
+Preparing to replace gcc-4.6 4.6.1-13 (using .../gcc-4.6_4.6.2-3_s390.deb) ...
+Unpacking replacement gcc-4.6 ...
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+(Reading database ... 10632 files and directories currently installed.)
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Unpacking libdatrie1 (from .../libdatrie1_0.2.4-3_s390.deb) ...
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-Selecting previously deselected package libfreetype6.
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-Selecting previously deselected package ucf.
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+Selecting previously unselected package ucf.
Unpacking ucf (from .../ucf_3.0025+nmu2_all.deb) ...
Moving old data out of the way
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-Unpacking ttf-dejavu-core (from .../ttf-dejavu-core_2.33-1_all.deb) ...
-Selecting previously deselected package fontconfig-config.
+Selecting previously unselected package ttf-dejavu-core.
+Unpacking ttf-dejavu-core (from .../ttf-dejavu-core_2.33-2_all.deb) ...
+Selecting previously unselected package fontconfig-config.
Unpacking fontconfig-config (from .../fontconfig-config_2.8.0-3_all.deb) ...
-Selecting previously deselected package libfontconfig1.
+Selecting previously unselected package libfontconfig1.
Unpacking libfontconfig1 (from .../libfontconfig1_2.8.0-3_s390.deb) ...
-Selecting previously deselected package libgfortran3.
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-Selecting previously deselected package x11-common.
-Unpacking x11-common (from .../x11-common_1%3a7.6+7_all.deb) ...
-Selecting previously deselected package libice6.
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+Selecting previously unselected package x11-common.
+Unpacking x11-common (from .../x11-common_1%3a7.6+9_all.deb) ...
+Selecting previously unselected package libice6.
Unpacking libice6 (from .../libice6_2%3a1.0.7-2_s390.deb) ...
-Selecting previously deselected package libpixman-1-0.
-Unpacking libpixman-1-0 (from .../libpixman-1-0_0.22.2-1_s390.deb) ...
-Selecting previously deselected package libpng12-0.
+Selecting previously unselected package libpixman-1-0.
+Unpacking libpixman-1-0 (from .../libpixman-1-0_0.23.8-1_s390.deb) ...
+Selecting previously unselected package libpng12-0.
Unpacking libpng12-0 (from .../libpng12-0_1.2.46-3_s390.deb) ...
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+Selecting previously unselected package libxau6.
Unpacking libxau6 (from .../libxau6_1%3a1.0.6-3_s390.deb) ...
-Selecting previously deselected package libxdmcp6.
+Selecting previously unselected package libxdmcp6.
Unpacking libxdmcp6 (from .../libxdmcp6_1%3a1.1.0-3_s390.deb) ...
-Selecting previously deselected package libxcb1.
+Selecting previously unselected package libxcb1.
Unpacking libxcb1 (from .../libxcb1_1.7-3_s390.deb) ...
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-Selecting previously deselected package libxcb-render0.
+Selecting previously unselected package libx11-data.
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+Selecting previously unselected package libxcb-render0.
Unpacking libxcb-render0 (from .../libxcb-render0_1.7-3_s390.deb) ...
-Selecting previously deselected package libxcb-shm0.
+Selecting previously unselected package libxcb-shm0.
Unpacking libxcb-shm0 (from .../libxcb-shm0_1.7-3_s390.deb) ...
-Selecting previously deselected package libxrender1.
+Selecting previously unselected package libxrender1.
Unpacking libxrender1 (from .../libxrender1_1%3a0.9.6-2_s390.deb) ...
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Unpacking libcairo2 (from .../libcairo2_1.10.2-6.1_s390.deb) ...
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-Unpacking libglib2.0-0 (from .../libglib2.0-0_2.28.6-1_s390.deb) ...
-Selecting previously deselected package libthai-data.
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Unpacking libthai-data (from .../libthai-data_0.1.15-2_all.deb) ...
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Unpacking libthai0 (from .../libthai0_0.1.15-2_s390.deb) ...
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Unpacking libxft2 (from .../libxft2_2.2.0-3_s390.deb) ...
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+Selecting previously unselected package fontconfig.
Unpacking fontconfig (from .../fontconfig_2.8.0-3_s390.deb) ...
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-Unpacking libpango1.0-0 (from .../libpango1.0-0_1.28.4-2_s390.deb) ...
-Selecting previously deselected package libsm6.
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Unpacking libsm6 (from .../libsm6_2%3a1.2.0-2_s390.deb) ...
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Unpacking libxext6 (from .../libxext6_2%3a1.3.0-3_s390.deb) ...
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Unpacking libxt6 (from .../libxt6_1%3a1.1.1-2_s390.deb) ...
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Unpacking bsdmainutils (from .../bsdmainutils_8.2.3_s390.deb) ...
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Unpacking groff-base (from .../groff-base_1.21-6_s390.deb) ...
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Unpacking man-db (from .../man-db_2.6.0.2-2_s390.deb) ...
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-Selecting previously deselected package html2text.
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Unpacking html2text (from .../html2text_1.3.2a-15_s390.deb) ...
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-Selecting previously deselected package intltool-debian.
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Unpacking intltool-debian (from .../intltool-debian_0.35.0+20060710.1_all.deb) ...
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Unpacking po-debconf (from .../po-debconf_1.0.16+nmu1_all.deb) ...
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-Selecting previously deselected package gfortran-4.6.
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-Selecting previously deselected package libblas3gf.
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-Selecting previously deselected package libbz2-dev.
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-Selecting previously deselected package libjpeg8.
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-Selecting previously deselected package libjpeg8-dev.
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+Selecting previously unselected package gfortran-4.6.
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+Selecting previously unselected package libbz2-dev.
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+Selecting previously unselected package libjpeg8-dev.
Unpacking libjpeg8-dev (from .../libjpeg8-dev_8c-2_s390.deb) ...
-Selecting previously deselected package liblapack3gf.
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-Selecting previously deselected package liblapack-dev.
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-Selecting previously deselected package libncurses5-dev.
-Unpacking libncurses5-dev (from .../libncurses5-dev_5.9-1_s390.deb) ...
-Selecting previously deselected package libpaper1.
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Unpacking libpaper1 (from .../libpaper1_1.1.24+nmu1_s390.deb) ...
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Unpacking libpaper-utils (from .../libpaper-utils_1.1.24+nmu1_s390.deb) ...
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Unpacking zlib1g-dev (from .../zlib1g-dev_1%3a1.2.3.4.dfsg-3_s390.deb) ...
-Selecting previously deselected package libpng12-dev.
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Unpacking libpng12-dev (from .../libpng12-dev_1.2.46-3_s390.deb) ...
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+Selecting previously unselected package libreadline-dev.
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Unpacking zip (from .../archives/zip_3.0-4_s390.deb) ...
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Unpacking unzip (from .../archives/unzip_6.0-5_s390.deb) ...
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Unpacking xdg-utils (from .../xdg-utils_1.1.0~rc1-2_all.deb) ...
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Unpacking tk8.5 (from .../tk8.5_8.5.10-1_s390.deb) ...
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-Setting up libpipeline1 (1.2.0-3) ...
+Selecting previously unselected package r-base-core.
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+Selecting previously unselected package r-base-dev.
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+Setting up libgomp1 (4.6.2-3) ...
+Setting up cpp-4.6 (4.6.2-3) ...
+Setting up gcc-4.6 (4.6.2-3) ...
+Setting up libpipeline1 (1.2.0-4) ...
+Setting up liblzma5 (5.1.1alpha+20110809-3) ...
+Setting up libpcre3 (8.12-4) ...
+Setting up libglib2.0-0 (2.28.8-1) ...
+No schema files found: doing nothing.
+Setting up libxml2 (2.7.8.dfsg-5) ...
+Setting up libcroco3 (0.6.2-2) ...
Setting up libdatrie1 (0.2.4-3) ...
-Setting up libexpat1 (2.0.1-7) ...
-Setting up libfreetype6 (2.4.4-2) ...
+Setting up libexpat1 (2.0.1-7.1) ...
+Setting up libfreetype6 (2.4.7-2) ...
Setting up ucf (3.0025+nmu2) ...
-Setting up ttf-dejavu-core (2.33-1) ...
+Setting up ttf-dejavu-core (2.33-2) ...
Setting up fontconfig-config (2.8.0-3) ...
Setting up libfontconfig1 (2.8.0-3) ...
-Setting up libgfortran3 (4.6.1-5) ...
-Setting up x11-common (1:7.6+7) ...
+Setting up libgfortran3 (4.6.2-3) ...
+Setting up x11-common (1:7.6+9) ...
All runlevel operations denied by policy
invoke-rc.d: policy-rc.d denied execution of start.
Setting up libice6 (2:1.0.7-2) ...
-Setting up libpixman-1-0 (0.22.2-1) ...
+Setting up libpixman-1-0 (0.23.8-1) ...
Setting up libpng12-0 (1.2.46-3) ...
Setting up libxau6 (1:1.0.6-3) ...
Setting up libxdmcp6 (1:1.1.0-3) ...
Setting up libxcb1 (1.7-3) ...
-Setting up libx11-data (2:1.4.4-1) ...
-Setting up libx11-6 (2:1.4.4-1) ...
+Setting up libx11-data (2:1.4.4-2) ...
+Setting up libx11-6 (2:1.4.4-2) ...
Setting up libxcb-render0 (1.7-3) ...
Setting up libxcb-shm0 (1.7-3) ...
Setting up libxrender1 (1:0.9.6-2) ...
Setting up libcairo2 (1.10.2-6.1) ...
-Setting up libpcre3 (8.12-3) ...
-Setting up libglib2.0-0 (2.28.6-1) ...
-No schema files found: doing nothing.
Setting up libthai-data (0.1.15-2) ...
Setting up libthai0 (0.1.15-2) ...
Setting up libxft2 (2.2.0-3) ...
Setting up fontconfig (2.8.0-3) ...
Cleaning up old fontconfig caches... done.
Regenerating fonts cache... done.
-Setting up libpango1.0-0 (1.28.4-2) ...
+Setting up libpango1.0-0 (1.29.4-2) ...
+Setting up libpcrecpp0 (8.12-4) ...
Setting up libsm6 (2:1.2.0-2) ...
+Setting up libjpeg8 (8c-2) ...
+Setting up libtiff4 (3.9.5-2) ...
+Setting up libunistring0 (0.9.3-5) ...
Setting up libxext6 (2:1.3.0-3) ...
+Setting up libxss1 (1:1.2.1-2) ...
Setting up libxt6 (1:1.1.1-2) ...
Setting up bsdmainutils (8.2.3) ...
update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode.
@@ -475,47 +531,40 @@ update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in
Setting up groff-base (1.21-6) ...
Setting up man-db (2.6.0.2-2) ...
Building database of manual pages ...
-Setting up libmagic1 (5.04-5+b1) ...
-Setting up file (5.04-5+b1) ...
-Setting up gettext-base (0.18.1.1-3) ...
-Setting up libxml2 (2.7.8.dfsg-4) ...
+Setting up libmagic1 (5.09-2) ...
+Setting up file (5.09-2) ...
+Setting up gettext-base (0.18.1.1-5) ...
+Setting up cdbs (0.4.99) ...
Setting up html2text (1.3.2a-15) ...
-Setting up libcroco3 (0.6.2-1) ...
-Setting up libunistring0 (0.9.3-4) ...
-Setting up gettext (0.18.1.1-3) ...
+Setting up gettext (0.18.1.1-5) ...
Setting up intltool-debian (0.35.0+20060710.1) ...
Setting up po-debconf (1.0.16+nmu1) ...
-Setting up debhelper (8.9.3) ...
-Setting up cdbs (0.4.96) ...
-Setting up dpatch (2.0.31) ...
-Setting up gfortran-4.6 (4.6.1-5) ...
-Setting up gfortran (4:4.6.1-2) ...
+Setting up debhelper (8.9.8) ...
+Setting up dpatch (2.0.33) ...
+Setting up gfortran-4.6 (4.6.2-3) ...
+Setting up gfortran (4:4.6.1-3) ...
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode.
-Setting up libblas3gf (1.2-8) ...
+Setting up libblas3gf (1.2.20110419-2) ...
update-alternatives: using /usr/lib/libblas/libblas.so.3gf to provide /usr/lib/libblas.so.3gf (libblas.so.3gf) in auto mode.
-Setting up libblas-dev (1.2-8) ...
+Setting up libblas-dev (1.2.20110419-2) ...
update-alternatives: using /usr/lib/libblas/libblas.so to provide /usr/lib/libblas.so (libblas.so) in auto mode.
-Setting up libbz2-dev (1.0.5-6) ...
-Setting up libjpeg62 (6b1-2) ...
-Setting up libjpeg8 (8c-2) ...
+Setting up libbz2-dev (1.0.5-7) ...
Setting up libjpeg8-dev (8c-2) ...
-Setting up liblapack3gf (3.3.0-4) ...
+Setting up liblapack3gf (3.3.1-1) ...
update-alternatives: using /usr/lib/lapack/liblapack.so.3gf to provide /usr/lib/liblapack.so.3gf (liblapack.so.3gf) in auto mode.
-Setting up liblapack-dev (3.3.0-4) ...
+Setting up liblapack-dev (3.3.1-1) ...
update-alternatives: using /usr/lib/lapack/liblapack.so to provide /usr/lib/liblapack.so (liblapack.so) in auto mode.
-Setting up libncurses5-dev (5.9-1) ...
+Setting up libtinfo-dev (5.9-2) ...
+Setting up libncurses5-dev (5.9-2) ...
Setting up libpaper1 (1.1.24+nmu1) ...
Creating config file /etc/papersize with new version
Setting up libpaper-utils (1.1.24+nmu1) ...
-Setting up libpcrecpp0 (8.12-3) ...
-Setting up libpcre3-dev (8.12-3) ...
+Setting up libpcre3-dev (8.12-4) ...
Setting up zlib1g-dev (1:1.2.3.4.dfsg-3) ...
Setting up libpng12-dev (1.2.46-3) ...
-Setting up libreadline6-dev (6.2-2) ...
-Setting up libreadline-dev (6.2-2) ...
-Setting up libtiff4 (3.9.5-1) ...
-Setting up libxss1 (1:1.2.1-1) ...
+Setting up libreadline6-dev (6.2-7) ...
+Setting up libreadline-dev (6.2-7) ...
Setting up zip (3.0-4) ...
Setting up unzip (6.0-5) ...
Setting up xdg-utils (1.1.0~rc1-2) ...
@@ -523,20 +572,22 @@ Setting up tcl8.5 (8.5.10-1) ...
update-alternatives: using /usr/bin/tclsh8.5 to provide /usr/bin/tclsh (tclsh) in auto mode.
Setting up tk8.5 (8.5.10-1) ...
update-alternatives: using /usr/bin/wish8.5 to provide /usr/bin/wish (wish) in auto mode.
-Setting up r-base-core (2.13.1-1) ...
+Setting up r-base-core (2.14.0-1) ...
Setting R_PAPERSIZE_USER default to 'a4'
Creating config file /etc/R/Renviron with new version
-Setting up r-base-dev (2.13.1-1) ...
+Setting up r-base-dev (2.14.0-1) ...
+Setting up libstdc++6-4.6-dev (4.6.2-3) ...
+Setting up g++-4.6 (4.6.2-3) ...
Removing negative dependencies:
Reading package lists...
Building dependency tree...
Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 12 not upgraded.
+0 upgraded, 0 newly installed, 0 to remove and 31 not upgraded.
Checking correctness of dependencies...
Kernel: Linux 2.6.32-5-s390x s390 (s390x)
-Toolchain package versions: binutils_2.21.53.20110720-1 dpkg-dev_1.16.0.3 g++-4.6_4.6.1-5 gcc-4.6_4.6.1-5 libc6-dev_2.13-11 libstdc++6_4.6.1-5 libstdc++6-4.6-dev_4.6.1-5 linux-libc-dev_3.0.0-1
-Package versions: apt_0.8.15.5 base-files_6.5 base-passwd_3.5.23 bash_4.1-3 binutils_2.21.53.20110720-1 bsdmainutils_8.2.3 bsdutils_1:2.19.1-4 build-essential_11.5 bzip2_1.0.5-6 cdbs_0.4.96 coreutils_8.5-1 cpp_4:4.6.1-2 cpp-4.6_4.6.1-5 dash_0.5.5.1-7.4 debconf_1.5.41 debconf-english_1.5.38 debfoster_2.7-1.1 debhelper_8.9.3 debian-archive-keyring_2010.08.28 debianutils_4.0.2 diffutils_1:3.0-1 dpatch_2.0.31 dpkg_1.16.0.3 dpkg-dev_1.16.0.3 e2fslibs_1.42~WIP-2011-07-02-1 e2fsprogs_1.42~WIP-2011-07-02-1 fakeroot_1.16-1 file_5.04-5+b1 findutils_4.4.2-1+b1 fontconfig_2.8.0-3 fontconfig-config_2.8.0-3 g++_4:4.6.1-2 g++-4.6_4.6.1-5 gcc_4:4.6.1-2 gcc-4.4-base_4.4.6-7 gcc-4.5-base_4.5.3-4 gcc-4.6_4.6.1-5 gcc-4.6-base_4.6.1-5 gettext_0.18.1.1-3 gettext-base_0.18.1.1-3 gfortran_4:4.6.1-2 gfortran-4.6_4.6.1-5 gnupg_1.4.11-3 gpgv_1.4.11-3 grep_2.9-1 groff-base_1.21-6 gzip_1.4-1 hostname_3.06 html2text_1.3.2a-15 initscripts_2.88dsf-13.11 insserv_1.14.0-2.1 intltool-debian_0.35.0+20060710.1 libacl1_2.2.51-3 libattr1_1:2.4.46-3 libblas-dev_1.2-8 libblas3gf_1.2-8 libblkid1_2.19.1-4 libbz2-1.0_1.0.5-6 libbz2-dev_1.0.5-6 libc-bin_2.13-11 libc-dev-bin_2.13-11 libc6_2.13-11 libc6-dev_2.13-11 libcairo2_1.10.2-6.1 libcloog-ppl0_0.15.9-3 libcomerr2_1.42~WIP-2011-07-02-1 libcroco3_0.6.2-1 libdatrie1_0.2.4-3 libdb5.1_5.1.25-11 libdpkg-perl_1.16.0.3 libexpat1_2.0.1-7 libfontconfig1_2.8.0-3 libfreetype6_2.4.4-2 libgc1c2_1:7.1-8 libgcc1_1:4.6.1-5 libgdbm3_1.8.3-10 libgfortran3_4.6.1-5 libglib2.0-0_2.28.6-1 libgmp10_2:5.0.1+dfsg-7 libgmpxx4ldbl_2:5.0.1+dfsg-7 libgomp1_4.6.1-5 libice6_2:1.0.7-2 libjpeg62_6b1-2 libjpeg8_8c-2 libjpeg8-dev_8c-2 liblapack-dev_3.3.0-4 liblapack3gf_3.3.0-4 liblzma2_5.0.0-2 libmagic1_5.04-5+b1 libmount1_2.19.1-4 libmpc2_0.9-3 libmpfr4_3.0.1-5 libncurses5_5.9-1 libncurses5-dev_5.9-1 libpam-modules_1.1.3-2 libpam-modules-bin_1.1.3-2 libpam-runtime_1.1.3-2 libpam0g_1.1.3-2 libpango1.0-0_1.28.4-2 libpaper-utils_1.1.24+nmu1 libpaper1_1.1.24+nmu1 libpcre3_8.12-3 libpcre3-dev_8.12-3 libpcrecpp0_8.12-3 libpipeline1_1.2.0-3 libpixman-1-0_0.22.2-1 libpng12-0_1.2.46-3 libpng12-dev_1.2.46-3 libppl-c4_0.11.2-4 libppl9_0.11.2-4 libpwl5_0.11.2-4 libreadline-dev_6.2-2 libreadline6_6.2-2 libreadline6-dev_6.2-2 libselinux1_2.0.98-1.1 libsepol1_2.0.42-1 libslang2_2.2.4-2 libsm6_2:1.2.0-2 libss2_1.42~WIP-2011-07-02-1 libstdc++6_4.6.1-5 libstdc++6-4.6-dev_4.6.1-5 libthai-data_0.1.15-2 libthai0_0.1.15-2 libtiff4_3.9.5-1 libtimedate-perl_1.2000-1 libunistring0_0.9.3-4 libusb-0.1-4_2:0.1.12-18 libuuid1_2.19.1-4 libx11-6_2:1.4.4-1 libx11-data_2:1.4.4-1 libxau6_1:1.0.6-3 libxcb-render0_1.7-3 libxcb-shm0_1.7-3 libxcb1_1.7-3 libxdmcp6_1:1.1.0-3 libxext6_2:1.3.0-3 libxft2_2.2.0-3 libxml2_2.7.8.dfsg-4 libxrender1_1:0.9.6-2 libxss1_1:1.2.1-1 libxt6_1:1.1.1-2 linux-libc-dev_3.0.0-1 login_1:4.1.4.2+svn3283-3 lsb-base_3.2-27 make_3.81-8.1 man-db_2.6.0.2-2 mawk_1.3.3-15 mount_2.19.1-4 multiarch-support_2.13-11 ncurses-base_5.9-1 ncurses-bin_5.9-1 passwd_1:4.1.4.2+svn3283-3 patch_2.6.1-2 perl_5.12.4-2 perl-base_5.12.4-2 perl-modules_5.12.4-2 po-debconf_1.0.16+nmu1 r-base-core_2.13.1-1 r-base-dev_2.13.1-1 readline-common_6.2-2 sed_4.2.1-9 sensible-utils_0.0.6 sudo_1.7.4p6-1 sysv-rc_2.88dsf-13.11 sysvinit_2.88dsf-13.11 sysvinit-utils_2.88dsf-13.11 tar_1.25-3 tcl8.5_8.5.10-1 tk8.5_8.5.10-1 ttf-dejavu-core_2.33-1 tzdata_2011h-3 ucf_3.0025+nmu2 unzip_6.0-5 util-linux_2.19.1-4 x11-common_1:7.6+7 xdg-utils_1.1.0~rc1-2 xz-utils_5.0.0-2 zip_3.0-4 zlib1g_1:1.2.3.4.dfsg-3 zlib1g-dev_1:1.2.3.4.dfsg-3
+Toolchain package versions: binutils_2.21.90.20111004-1 dpkg-dev_1.16.1 g++-4.6_4.6.2-3 gcc-4.6_4.6.2-3 libc6-dev_2.13-21 libstdc++6_4.6.2-3 libstdc++6-4.6-dev_4.6.2-3 linux-libc-dev_3.0.0-5
+Package versions: apt_0.8.15.8 base-files_6.5 base-passwd_3.5.23 bash_4.1-3 binutils_2.21.90.20111004-1 bsdmainutils_8.2.3 bsdutils_1:2.19.1-5 build-essential_11.5 bzip2_1.0.5-7 cdbs_0.4.99 coreutils_8.13-3 cpp_4:4.6.1-3 cpp-4.6_4.6.2-3 dash_0.5.7-2 debconf_1.5.41 debconf-i18n_1.5.41 debfoster_2.7-1.1 debhelper_8.9.8 debian-archive-keyring_2010.08.28 debianutils_4.0.3 diffutils_1:3.0-1 dpatch_2.0.33 dpkg_1.16.1 dpkg-dev_1.16.1 e2fslibs_1.42~WIP-2011-10-05-2 e2fsprogs_1.42~WIP-2011-10-05-2 fakeroot_1.18.1-1 file_5.09-2 findutils_4.4.2-1+b1 fontconfig_2.8.0-3 fontconfig-config_2.8.0-3 g++_4:4.6.1-3 g++-4.6_4.6.2-3 gcc_4:4.6.1-3 gcc-4.4-base_4.4.6-11 gcc-4.5-base_4.5.3-9 gcc-4.6_4.6.2-3 gcc-4.6-base_4.6.2-3 gettext_0.18.1.1-5 gettext-base_0.18.1.1-5 gfortran_4:4.6.1-3 gfortran-4.6_4.6.2-3 gnupg_1.4.11-3 gpgv_1.4.11-3 grep_2.9-2 groff-base_1.21-6 gzip_1.4-1 hostname_3.06 html2text_1.3.2a-15 initscripts_2.88dsf-13.11 insserv_1.14.0-2.1 intltool-debian_0.35.0+20060710.1 libacl1_2.2.51-3 libattr1_1:2.4.46-3 libblas-dev_1.2.20110419-2 libblas3gf_1.2.20110419-2 libblkid1_2.19.1-5 libbz2-1.0_1.0.5-7 libbz2-dev_1.0.5-7 libc-bin_2.13-21 libc-dev-bin_2.13-21 libc6_2.13-21 libc6-dev_2.13-21 libcairo2_1.10.2-6.1 libcomerr2_1.42~WIP-2011-10-05-2 libcroco3_0.6.2-2 libdatrie1_0.2.4-3 libdb5.1_5.1.25-11 libdpkg-perl_1.16.1 libexpat1_2.0.1-7.1 libfontconfig1_2.8.0-3 libfreetype6_2.4.7-2 libgc1c2_1:7.1-8 libgcc1_1:4.6.2-3 libgdbm3_1.8.3-10 libgfortran3_4.6.2-3 libglib2.0-0_2.28.8-1 libgmp10_2:5.0.2+dfsg-1 libgomp1_4.6.2-3 libice6_2:1.0.7-2 libjpeg8_8c-2 libjpeg8-dev_8c-2 liblapack-dev_3.3.1-1 liblapack3gf_3.3.1-1 liblocale-gettext-perl_1.05-7 liblzma2_5.1.1alpha+20110809-2 liblzma5_5.1.1alpha+20110809-3 libmagic1_5.09-2 libmount1_2.19.1-5 libmpc2_0.9-3 libmpfr4_3.1.0-1 libncurses5_5.9-2 libncurses5-dev_5.9-2 libpam-modules_1.1.3-4 libpam-modules-bin_1.1.3-4 libpam-runtime_1.1.3-4 libpam0g_1.1.3-4 libpango1.0-0_1.29.4-2 libpaper-utils_1.1.24+nmu1 libpaper1_1.1.24+nmu1 libpcre3_8.12-4 libpcre3-dev_8.12-4 libpcrecpp0_8.12-4 libpipeline1_1.2.0-4 libpixman-1-0_0.23.8-1 libpng12-0_1.2.46-3 libpng12-dev_1.2.46-3 libreadline-dev_6.2-7 libreadline6_6.2-7 libreadline6-dev_6.2-7 libselinux1_2.1.0-1 libsepol1_2.1.0-1.1 libslang2_2.2.4-3 libsm6_2:1.2.0-2 libss2_1.42~WIP-2011-10-05-2 libstdc++6_4.6.2-3 libstdc++6-4.6-dev_4.6.2-3 libtext-charwidth-perl_0.04-7 libtext-iconv-perl_1.7-4 libtext-wrapi18n-perl_0.06-7 libthai-data_0.1.15-2 libthai0_0.1.15-2 libtiff4_3.9.5-2 libtimedate-perl_1.2000-1 libtinfo-dev_5.9-2 libtinfo5_5.9-2 libunistring0_0.9.3-5 libusb-0.1-4_2:0.1.12-19 libuuid1_2.19.1-5 libx11-6_2:1.4.4-2 libx11-data_2:1.4.4-2 libxau6_1:1.0.6-3 libxcb-render0_1.7-3 libxcb-shm0_1.7-3 libxcb1_1.7-3 libxdmcp6_1:1.1.0-3 libxext6_2:1.3.0-3 libxft2_2.2.0-3 libxml2_2.7.8.dfsg-5 libxrender1_1:0.9.6-2 libxss1_1:1.2.1-2 libxt6_1:1.1.1-2 linux-libc-dev_3.0.0-5 login_1:4.1.4.2+svn3283-3 lsb-base_3.2-28 make_3.81-8.1 man-db_2.6.0.2-2 mawk_1.3.3-15 mount_2.19.1-5 multiarch-support_2.13-21 ncurses-base_5.9-2 ncurses-bin_5.9-2 passwd_1:4.1.4.2+svn3283-3 patch_2.6.1-2 perl_5.12.4-5 perl-base_5.12.4-5 perl-modules_5.12.4-5 po-debconf_1.0.16+nmu1 r-base-core_2.14.0-1 r-base-dev_2.14.0-1 readline-common_6.2-6 sed_4.2.1-9 sensible-utils_0.0.6 sudo_1.8.2-2 sysv-rc_2.88dsf-13.11 sysvinit_2.88dsf-13.11 sysvinit-utils_2.88dsf-13.11 tar_1.26-2 tcl8.5_8.5.10-1 tk8.5_8.5.10-1 ttf-dejavu-core_2.33-2 tzdata_2011k-1 ucf_3.0025+nmu2 unzip_6.0-5 util-linux_2.19.1-5 x11-common_1:7.6+9 xdg-utils_1.1.0~rc1-2 xz-utils_5.1.1alpha+20110809-2 zip_3.0-4 zlib1g_1:1.2.3.4.dfsg-3 zlib1g-dev_1:1.2.3.4.dfsg-3
┌──────────────────────────────────────────────────────────────────────────────┐
│ Build │
@@ -547,12 +598,12 @@ Unpack source
─────────────
gpgv: keyblock resource `/home/buildd/.gnupg/trustedkeys.gpg': file open error
-gpgv: Signature made Thu Aug 4 00:12:34 2011 UTC using RSA key ID 2295D502
+gpgv: Signature made Wed Nov 2 05:31:37 2011 UTC using RSA key ID 2295D502
gpgv: Can't check signature: public key not found
-dpkg-source: warning: failed to verify signature on ./r-bioc-biobase_2.12.2-1.dsc
-dpkg-source: info: extracting r-bioc-biobase in r-bioc-biobase-2.12.2
-dpkg-source: info: unpacking r-bioc-biobase_2.12.2.orig.tar.gz
-dpkg-source: info: applying r-bioc-biobase_2.12.2-1.diff.gz
+dpkg-source: warning: failed to verify signature on ./r-bioc-biobase_2.14.0-1.dsc
+dpkg-source: info: extracting r-bioc-biobase in r-bioc-biobase-2.14.0
+dpkg-source: info: unpacking r-bioc-biobase_2.14.0.orig.tar.gz
+dpkg-source: info: applying r-bioc-biobase_2.14.0-1.diff.gz
Check disc space
────────────────
@@ -561,14 +612,14 @@ Check disc space
dpkg-buildpackage
─────────────────
-dpkg-buildpackage: export CFLAGS from dpkg-buildflags (origin: vendor): -g -O2
-dpkg-buildpackage: export CPPFLAGS from dpkg-buildflags (origin: vendor):
-dpkg-buildpackage: export CXXFLAGS from dpkg-buildflags (origin: vendor): -g -O2
-dpkg-buildpackage: export FFLAGS from dpkg-buildflags (origin: vendor): -g -O2
-dpkg-buildpackage: export LDFLAGS from dpkg-buildflags (origin: vendor):
+dpkg-buildpackage: dpkg-buildflags (origin: vendor): CFLAGS = -g -O2 -fstack-protector --param=ssp-buffer-size=4 -D_FORTIFY_SOURCE=2 -Wformat -Wformat-security -Werror=format-security
+dpkg-buildpackage: dpkg-buildflags (origin: vendor): CPPFLAGS =
+dpkg-buildpackage: dpkg-buildflags (origin: vendor): CXXFLAGS = -g -O2 -fstack-protector --param=ssp-buffer-size=4 -D_FORTIFY_SOURCE=2 -Wformat -Wformat-security -Werror=format-security
+dpkg-buildpackage: dpkg-buildflags (origin: vendor): FFLAGS = -g -O2
+dpkg-buildpackage: dpkg-buildflags (origin: vendor): LDFLAGS = -Wl,-z,relro
dpkg-buildpackage: source package r-bioc-biobase
-dpkg-buildpackage: source version 2.12.2-1
- dpkg-source --before-build r-bioc-biobase-2.12.2
+dpkg-buildpackage: source version 2.14.0-1
+ dpkg-source --before-build r-bioc-biobase-2.14.0
dpkg-buildpackage: host architecture s390
fakeroot debian/rules clean
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
@@ -576,9 +627,9 @@ test -x debian/rules
dh_testroot
/usr/bin/make -f debian/rules reverse-config
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
-make[1]: Entering directory `/build/buildd-r-bioc-biobase_2.12.2-1-s390-bX2NUy/r-bioc-biobase-2.12.2'
+make[1]: Entering directory `/build/buildd-r-bioc-biobase_2.14.0-1-s390-OYpSsq/r-bioc-biobase-2.14.0'
make[1]: Nothing to be done for `reverse-config'.
-make[1]: Leaving directory `/build/buildd-r-bioc-biobase_2.12.2-1-s390-bX2NUy/r-bioc-biobase-2.12.2'
+make[1]: Leaving directory `/build/buildd-r-bioc-biobase_2.14.0-1-s390-OYpSsq/r-bioc-biobase-2.14.0'
if [ "reverse-patches" = "reverse-patches" ]; then rm -f debian/stamp-patched; fi
patches:
if [ "reverse-patches" != "reverse-patches" ]; then touch debian/stamp-patched; fi
@@ -598,21 +649,22 @@ rm -f config.log config.status
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
test -x debian/rules
mkdir -p "."
+/usr/share/cdbs/1/rules/buildcore.mk:109: WARNING: DEB_DH_BUILDDEB_ARGS is a deprecated variable
/usr/bin/make -f debian/rules reverse-config
-make[1]: Entering directory `/build/buildd-r-bioc-biobase_2.12.2-1-s390-bX2NUy/r-bioc-biobase-2.12.2'
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
+make[1]: Entering directory `/build/buildd-r-bioc-biobase_2.14.0-1-s390-OYpSsq/r-bioc-biobase-2.14.0'
make[1]: Nothing to be done for `reverse-config'.
-make[1]: Leaving directory `/build/buildd-r-bioc-biobase_2.12.2-1-s390-bX2NUy/r-bioc-biobase-2.12.2'
+make[1]: Leaving directory `/build/buildd-r-bioc-biobase_2.14.0-1-s390-OYpSsq/r-bioc-biobase-2.14.0'
if [ "debian/stamp-patched" = "reverse-patches" ]; then rm -f debian/stamp-patched; fi
patches:
if [ "debian/stamp-patched" != "reverse-patches" ]; then touch debian/stamp-patched; fi
if [ "debian/stamp-patched" != "reverse-patches" ] ; then \
/usr/bin/make -f debian/rules update-config ; \
fi
-make[1]: Entering directory `/build/buildd-r-bioc-biobase_2.12.2-1-s390-bX2NUy/r-bioc-biobase-2.12.2'
+make[1]: Entering directory `/build/buildd-r-bioc-biobase_2.14.0-1-s390-OYpSsq/r-bioc-biobase-2.14.0'
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
make[1]: Nothing to be done for `update-config'.
-make[1]: Leaving directory `/build/buildd-r-bioc-biobase_2.12.2-1-s390-bX2NUy/r-bioc-biobase-2.12.2'
+make[1]: Leaving directory `/build/buildd-r-bioc-biobase_2.14.0-1-s390-OYpSsq/r-bioc-biobase-2.14.0'
fakeroot debian/rules binary-arch
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
test -x debian/rules
@@ -620,29 +672,30 @@ dh_testroot
dh_prep
dh_installdirs -A
mkdir -p "."
+/usr/share/cdbs/1/rules/buildcore.mk:109: WARNING: DEB_DH_BUILDDEB_ARGS is a deprecated variable
dh_installdirs usr/lib/R/site-library
if test -f /usr/bin/xvfb-run; then \
xvfb-run -a \
- R CMD INSTALL -l /build/buildd-r-bioc-biobase_2.12.2-1-s390-bX2NUy/r-bioc-biobase-2.12.2/debian/r-bioc-biobase/usr/lib/R/site-library --clean \
+ R CMD INSTALL -l /build/buildd-r-bioc-biobase_2.14.0-1-s390-OYpSsq/r-bioc-biobase-2.14.0/debian/r-bioc-biobase/usr/lib/R/site-library --clean \
. ; \
else \
- R CMD INSTALL -l /build/buildd-r-bioc-biobase_2.12.2-1-s390-bX2NUy/r-bioc-biobase-2.12.2/debian/r-bioc-biobase/usr/lib/R/site-library \
+ R CMD INSTALL -l /build/buildd-r-bioc-biobase_2.14.0-1-s390-OYpSsq/r-bioc-biobase-2.14.0/debian/r-bioc-biobase/usr/lib/R/site-library \
--clean . ;\
fi
* installing *source* package 'Biobase' ...
** libs
-make[1]: Entering directory `/build/buildd-r-bioc-biobase_2.12.2-1-s390-bX2NUy/r-bioc-biobase-2.12.2/src'
-gcc -I/usr/share/R/include -fPIC -std=gnu99 -O3 -pipe -g -c Rinit.c -o Rinit.o
-gcc -I/usr/share/R/include -fPIC -std=gnu99 -O3 -pipe -g -c anyMissing.c -o anyMissing.o
-gcc -I/usr/share/R/include -fPIC -std=gnu99 -O3 -pipe -g -c envir.c -o envir.o
-gcc -I/usr/share/R/include -fPIC -std=gnu99 -O3 -pipe -g -c matchpt.c -o matchpt.o
-gcc -I/usr/share/R/include -fPIC -std=gnu99 -O3 -pipe -g -c rowMedians.c -o rowMedians.o
-gcc -I/usr/share/R/include -fPIC -std=gnu99 -O3 -pipe -g -c sublist_extract.c -o sublist_extract.o
-gcc -shared -o Biobase.so Rinit.o anyMissing.o envir.o matchpt.o rowMedians.o sublist_extract.o -L/usr/lib/R/lib -lR
-make[1]: Leaving directory `/build/buildd-r-bioc-biobase_2.12.2-1-s390-bX2NUy/r-bioc-biobase-2.12.2/src'
-make[1]: Entering directory `/build/buildd-r-bioc-biobase_2.12.2-1-s390-bX2NUy/r-bioc-biobase-2.12.2/src'
-make[1]: Leaving directory `/build/buildd-r-bioc-biobase_2.12.2-1-s390-bX2NUy/r-bioc-biobase-2.12.2/src'
-installing to /build/buildd-r-bioc-biobase_2.12.2-1-s390-bX2NUy/r-bioc-biobase-2.12.2/debian/r-bioc-biobase/usr/lib/R/site-library/Biobase/libs
+make[1]: Entering directory `/build/buildd-r-bioc-biobase_2.14.0-1-s390-OYpSsq/r-bioc-biobase-2.14.0/src'
+gcc -std=gnu99 -I/usr/share/R/include -fPIC -O3 -pipe -g -c Rinit.c -o Rinit.o
+gcc -std=gnu99 -I/usr/share/R/include -fPIC -O3 -pipe -g -c anyMissing.c -o anyMissing.o
+gcc -std=gnu99 -I/usr/share/R/include -fPIC -O3 -pipe -g -c envir.c -o envir.o
+gcc -std=gnu99 -I/usr/share/R/include -fPIC -O3 -pipe -g -c matchpt.c -o matchpt.o
+gcc -std=gnu99 -I/usr/share/R/include -fPIC -O3 -pipe -g -c rowMedians.c -o rowMedians.o
+gcc -std=gnu99 -I/usr/share/R/include -fPIC -O3 -pipe -g -c sublist_extract.c -o sublist_extract.o
+gcc -std=gnu99 -shared -o Biobase.so Rinit.o anyMissing.o envir.o matchpt.o rowMedians.o sublist_extract.o -L/usr/lib/R/lib -lR
+make[1]: Leaving directory `/build/buildd-r-bioc-biobase_2.14.0-1-s390-OYpSsq/r-bioc-biobase-2.14.0/src'
+make[1]: Entering directory `/build/buildd-r-bioc-biobase_2.14.0-1-s390-OYpSsq/r-bioc-biobase-2.14.0/src'
+make[1]: Leaving directory `/build/buildd-r-bioc-biobase_2.14.0-1-s390-OYpSsq/r-bioc-biobase-2.14.0/src'
+installing to /build/buildd-r-bioc-biobase_2.14.0-1-s390-OYpSsq/r-bioc-biobase-2.14.0/debian/r-bioc-biobase/usr/lib/R/site-library/Biobase/libs
** R
** data
** inst
@@ -650,20 +703,27 @@ installing to /build/buildd-r-bioc-biobase_2.12.2-1-s390-bX2NUy/r-bioc-biobase-2
** help
*** installing help indices
** building package indices ...
+*** tangling vignette sources ...
+ 'BiobaseDevelopment.Rnw'
+ 'Bioconductor.Rnw'
+ 'ExpressionSetIntroduction.Rnw'
+ 'HowTo.Rnw'
+ 'Qviews.Rnw'
+ 'esApply.Rnw'
** testing if installed package can be loaded
* DONE (Biobase)
-rm -vf /build/buildd-r-bioc-biobase_2.12.2-1-s390-bX2NUy/r-bioc-biobase-2.12.2/debian/r-bioc-biobase/usr/lib/R/site-library/R.css \
- /build/buildd-r-bioc-biobase_2.12.2-1-s390-bX2NUy/r-bioc-biobase-2.12.2/debian/r-bioc-biobase/usr/lib/R/site-library/Biobase/COPYING \
- /build/buildd-r-bioc-biobase_2.12.2-1-s390-bX2NUy/r-bioc-biobase-2.12.2/debian/r-bioc-biobase/usr/lib/R/site-library/Biobase/LICENSE.txt
+rm -vf /build/buildd-r-bioc-biobase_2.14.0-1-s390-OYpSsq/r-bioc-biobase-2.14.0/debian/r-bioc-biobase/usr/lib/R/site-library/R.css \
+ /build/buildd-r-bioc-biobase_2.14.0-1-s390-OYpSsq/r-bioc-biobase-2.14.0/debian/r-bioc-biobase/usr/lib/R/site-library/Biobase/COPYING \
+ /build/buildd-r-bioc-biobase_2.14.0-1-s390-OYpSsq/r-bioc-biobase-2.14.0/debian/r-bioc-biobase/usr/lib/R/site-library/Biobase/LICENSE.txt
if test -f debian/overrides; then \
- install -d /build/buildd-r-bioc-biobase_2.12.2-1-s390-bX2NUy/r-bioc-biobase-2.12.2/debian/r-bioc-biobase/usr/share/lintian/overrides ; \
+ install -d /build/buildd-r-bioc-biobase_2.14.0-1-s390-OYpSsq/r-bioc-biobase-2.14.0/debian/r-bioc-biobase/usr/share/lintian/overrides ; \
install -m 0644 debian/overrides \
- /build/buildd-r-bioc-biobase_2.12.2-1-s390-bX2NUy/r-bioc-biobase-2.12.2/debian/r-bioc-biobase/usr/share/lintian/overrides/r-bioc-biobase; \
+ /build/buildd-r-bioc-biobase_2.14.0-1-s390-OYpSsq/r-bioc-biobase-2.14.0/debian/r-bioc-biobase/usr/share/lintian/overrides/r-bioc-biobase; \
fi
Adding cdbs dependencies to debian/r-bioc-biobase.substvars
dh_installdirs -pr-bioc-biobase
-echo "R:Depends=r-base-core (>= 2.13.1~)" >> debian/r-bioc-biobase.substvars
+echo "R:Depends=r-base-core (>= 2.14.0~)" >> debian/r-bioc-biobase.substvars
dh_installdocs -pr-bioc-biobase ./NEWS
dh_installexamples -pr-bioc-biobase
dh_installman -pr-bioc-biobase
@@ -694,23 +754,23 @@ dh_perl -pr-bioc-biobase
dh_shlibdeps -pr-bioc-biobase
dh_gencontrol -pr-bioc-biobase
dh_md5sums -pr-bioc-biobase
-dh_builddeb -pr-bioc-biobase
-dpkg-deb: building package `r-bioc-biobase' in `../r-bioc-biobase_2.12.2-1_s390.deb'.
- dpkg-genchanges -B -ms390 Build Daemon (zandonai) <buildd_s390-zandonai at buildd.debian.org> >../r-bioc-biobase_2.12.2-1_s390.changes
+dh_builddeb -pr-bioc-biobase -- -Z xz
+dpkg-deb: building package `r-bioc-biobase' in `../r-bioc-biobase_2.14.0-1_s390.deb'.
+ dpkg-genchanges -B -ms390 Build Daemon (zandonai) <buildd_s390-zandonai at buildd.debian.org> >../r-bioc-biobase_2.14.0-1_s390.changes
dpkg-genchanges: arch-specific upload - not including arch-independent packages
dpkg-genchanges: binary-only upload - not including any source code
- dpkg-source --after-build r-bioc-biobase-2.12.2
+ dpkg-source --after-build r-bioc-biobase-2.14.0
dpkg-buildpackage: binary only upload (no source included)
────────────────────────────────────────────────────────────────────────────────
-Build finished at 20110804-0026
+Build finished at 20111102-0559
-r-bioc-biobase_2.12.2-1_s390.changes:
+r-bioc-biobase_2.14.0-1_s390.changes:
Format: 1.8
-Date: Thu, 04 Aug 2011 08:58:03 +0900
+Date: Wed, 02 Nov 2011 13:52:04 +0900
Source: r-bioc-biobase
Binary: r-bioc-biobase
Architecture: s390
-Version: 2.12.2-1
+Version: 2.14.0-1
Distribution: sid
Urgency: low
Maintainer: s390 Build Daemon (zandonai) <buildd_s390-zandonai at buildd.debian.org>
@@ -718,34 +778,38 @@ Changed-By: Charles Plessy <plessy at debian.org>
Description:
r-bioc-biobase - base functions for Bioconductor
Changes:
- r-bioc-biobase (2.12.2-1) unstable; urgency=low
+ r-bioc-biobase (2.14.0-1) unstable; urgency=low
.
- * New upstream release.
+ [cb6b786] Bioconductor release 2.9.
+ [d70e490] Build-Depend on R >= 2.10 according to DESCRIPTION.
+ [ae99e35] Include 7 digits of the commit id in the changelog entry.
+ [33b5d47] Compress binary package with xz.
Checksums-Sha1:
- c815157142aa48e22edcaa6bc2b6dbfdb20173f9 2666798 r-bioc-biobase_2.12.2-1_s390.deb
+ 0cdd5dd9c4263e010696bd70d3d72fc9d7a9758a 2316662 r-bioc-biobase_2.14.0-1_s390.deb
Checksums-Sha256:
- 579e773241d83d3e496463ea2bb5cea52ddcfb6270b7f2c22966b18fb1122901 2666798 r-bioc-biobase_2.12.2-1_s390.deb
+ 1bc86eaafe54ba282ae3547dacc6e8c8ed14d6cd17fe14385a7f30044624a47b 2316662 r-bioc-biobase_2.14.0-1_s390.deb
Files:
- 2af0eeac1d174f1cfe8b6154a1c3f1c9 2666798 gnu-r optional r-bioc-biobase_2.12.2-1_s390.deb
+ a11dd35dd194336605db185d31d9c826 2316662 gnu-r optional r-bioc-biobase_2.14.0-1_s390.deb
┌──────────────────────────────────────────────────────────────────────────────┐
│ Package contents │
└──────────────────────────────────────────────────────────────────────────────┘
-r-bioc-biobase_2.12.2-1_s390.deb
+r-bioc-biobase_2.14.0-1_s390.deb
────────────────────────────────
new debian package, version 2.0.
- size 2666798 bytes: control archive= 4937 bytes.
- 1186 bytes, 25 lines control
+ size 2316662 bytes: control archive= 4946 bytes.
+ 1216 bytes, 26 lines control
13314 bytes, 141 lines md5sums
Package: r-bioc-biobase
- Version: 2.12.2-1
+ Version: 2.14.0-1
Architecture: s390
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
- Installed-Size: 3800
- Depends: libc6 (>= 2.3), r-base-core (>= 2.13.1~)
+ Installed-Size: 3069
+ Pre-Depends: dpkg (>= 1.15.6)
+ Depends: libc6 (>= 2.3), r-base-core (>= 2.14.0~)
Section: gnu-r
Priority: optional
Homepage: http://www.bioconductor.org
@@ -766,177 +830,177 @@ r-bioc-biobase_2.12.2-1_s390.deb
unofficial auto-generated Bioconductor packages for Debian and Ubuntu systems,
that are prepared by members of the Debian Med team.
-drwxr-xr-x root/root 0 2011-08-04 00:26 ./
-drwxr-xr-x root/root 0 2011-08-04 00:26 ./usr/
-drwxr-xr-x root/root 0 2011-08-04 00:26 ./usr/lib/
-drwxr-xr-x root/root 0 2011-08-04 00:26 ./usr/lib/R/
-drwxr-xr-x root/root 0 2011-08-04 00:26 ./usr/lib/R/site-library/
-drwxr-xr-x root/root 0 2011-08-04 00:26 ./usr/lib/R/site-library/Biobase/
--rw-r--r-- root/root 6600 2011-08-04 00:26 ./usr/lib/R/site-library/Biobase/INDEX
-drwxr-xr-x root/root 0 2011-08-04 00:26 ./usr/lib/R/site-library/Biobase/R/
--rw-r--r-- root/root 8691 2011-08-04 00:26 ./usr/lib/R/site-library/Biobase/R/Biobase.rdx
--rw-r--r-- root/root 363975 2011-08-04 00:26 ./usr/lib/R/site-library/Biobase/R/Biobase.rdb
--rw-r--r-- root/root 384 2011-08-04 00:26 ./usr/lib/R/site-library/Biobase/R/Biobase
-drwxr-xr-x root/root 0 2011-08-04 00:26 ./usr/lib/R/site-library/Biobase/html/
--rw-r--r-- root/root 1179 2011-08-04 00:26 ./usr/lib/R/site-library/Biobase/html/R.css
--rw-r--r-- root/root 51239 2011-08-04 00:26 ./usr/lib/R/site-library/Biobase/html/00Index.html
-drwxr-xr-x root/root 0 2011-08-04 00:26 ./usr/lib/R/site-library/Biobase/libs/
--rw-r--r-- root/root 20688 2011-08-04 00:26 ./usr/lib/R/site-library/Biobase/libs/Biobase.so
-drwxr-xr-x root/root 0 2011-08-04 00:26 ./usr/lib/R/site-library/Biobase/scripts/
--rw-r--r-- root/root 5365 2011-08-04 00:26 ./usr/lib/R/site-library/Biobase/scripts/getBioC.R
--rw-r--r-- root/root 2008 2011-08-04 00:26 ./usr/lib/R/site-library/Biobase/scripts/makeExpressionSetPackage.R
--rw-r--r-- root/root 1213 2011-08-04 00:26 ./usr/lib/R/site-library/Biobase/scripts/getBioCHelp
--rw-r--r-- root/root 6808 2011-08-04 00:26 ./usr/lib/R/site-library/Biobase/scripts/query.packages.R
--rw-r--r-- root/root 774 2011-08-04 00:26 ./usr/lib/R/site-library/Biobase/scripts/esetTesting.R
--rw-r--r-- root/root 1122 2011-08-04 00:26 ./usr/lib/R/site-library/Biobase/scripts/getBioCPkgNames.R
--rw-r--r-- root/root 3988 2011-08-04 00:26 ./usr/lib/R/site-library/Biobase/NEWS
-drwxr-xr-x root/root 0 2011-08-04 00:26 ./usr/lib/R/site-library/Biobase/data/
--rw-r--r-- root/root 435 2011-08-04 00:26 ./usr/lib/R/site-library/Biobase/data/geneCovariate.rda
--rw-r--r-- root/root 125627 2011-08-04 00:26 ./usr/lib/R/site-library/Biobase/data/geneData.R
--rw-r--r-- root/root 501 2011-08-04 00:26 ./usr/lib/R/site-library/Biobase/data/geneCov.R
--rw-r--r-- root/root 345999 2011-08-04 00:26 ./usr/lib/R/site-library/Biobase/data/SW.rda
--rw-r--r-- root/root 2032 2011-08-04 00:26 ./usr/lib/R/site-library/Biobase/data/reporter.rda
--rw-r--r-- root/root 115 2011-08-04 00:26 ./usr/lib/R/site-library/Biobase/data/sample.exprSet.R
--rw-r--r-- root/root 25217 2011-08-04 00:26 ./usr/lib/R/site-library/Biobase/data/sample.MultiSet.rda
--rw-r--r-- root/root 277973 2011-08-04 00:26 ./usr/lib/R/site-library/Biobase/data/sample.ExpressionSet.rda
--rw-r--r-- root/root 1556 2011-08-04 00:26 ./usr/lib/R/site-library/Biobase/data/aaMap.R
--rw-r--r-- root/root 117 2011-08-04 00:26 ./usr/lib/R/site-library/Biobase/data/sample.exprSet.1.R
--rw-r--r-- root/root 107 2011-08-04 00:26 ./usr/lib/R/site-library/Biobase/data/sample.eSet.R
--rw-r--r-- root/root 28463 2011-08-04 00:26 ./usr/lib/R/site-library/Biobase/data/seD.rda
-drwxr-xr-x root/root 0 2011-08-04 00:26 ./usr/lib/R/site-library/Biobase/help/
--rw-r--r-- root/root 1996 2011-08-04 00:26 ./usr/lib/R/site-library/Biobase/help/Biobase.rdx
--rw-r--r-- root/root 242278 2011-08-04 00:26 ./usr/lib/R/site-library/Biobase/help/Biobase.rdb
--rw-r--r-- root/root 858 2011-08-04 00:26 ./usr/lib/R/site-library/Biobase/help/paths.rds
--rw-r--r-- root/root 3321 2011-08-04 00:26 ./usr/lib/R/site-library/Biobase/help/aliases.rds
--rw-r--r-- root/root 14396 2011-08-04 00:26 ./usr/lib/R/site-library/Biobase/help/AnIndex
-drwxr-xr-x root/root 0 2011-08-04 00:26 ./usr/lib/R/site-library/Biobase/UnitTests/
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+-rw-r--r-- root/root 183 2011-11-02 05:59 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/2.0/VersionedBiobase.Rda
+-rw-r--r-- root/root 998 2011-11-02 05:59 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/2.0/phenoData.Rda
+-rw-r--r-- root/root 227 2011-11-02 05:59 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/2.0/aggregator.Rda
+-rw-r--r-- root/root 4822 2011-11-02 05:59 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/2.0/ExpressionSet.Rda
+-rw-r--r-- root/root 105 2011-11-02 05:59 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/2.0/Versions.Rda
+-rw-r--r-- root/root 113 2011-11-02 05:59 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/2.0/ScalarCharacter.Rda
+-rw-r--r-- root/root 4705 2011-11-02 05:59 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/2.0/exprSet.Rda
+-rw-r--r-- root/root 555 2011-11-02 05:59 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/2.0/MultiSet.Rda
+-rw-r--r-- root/root 143 2011-11-02 05:59 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/2.0/Versioned.Rda
+-rw-r--r-- root/root 795 2011-11-02 05:59 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/2.0/MIAME.Rda
+-rw-r--r-- root/root 110 2011-11-02 05:59 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/2.0/VersionsNull.Rda
+-rw-r--r-- root/root 146 2011-11-02 05:59 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/2.0/container.Rda
+drwxr-xr-x root/root 0 2011-11-02 05:59 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/1.8/
+-rw-r--r-- root/root 939 2011-11-02 05:59 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/1.8/AnnotatedDataFrame.Rda
+-rw-r--r-- root/root 943 2011-11-02 05:59 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/1.8/phenoData.Rda
+-rw-r--r-- root/root 4678 2011-11-02 05:59 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/1.8/ExpressionSet.Rda
+-rw-r--r-- root/root 4588 2011-11-02 05:59 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/1.8/exprSet.Rda
+-rw-r--r-- root/root 741 2011-11-02 05:59 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/1.8/MIAME.Rda
+drwxr-xr-x root/root 0 2011-11-02 05:59 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/raw/
+-rw-r--r-- root/root 705 2011-11-02 05:59 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/raw/pData.tab
+-rw-r--r-- root/root 6194 2011-11-02 05:59 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/raw/exprs.tab
+-rw-r--r-- root/root 423 2011-11-02 05:59 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/raw/varMetadata.tab
+-rw-r--r-- root/root 403 2011-11-02 05:59 ./usr/lib/R/site-library/Biobase/UnitTests/copyEnv_test.R
+-rw-r--r-- root/root 1907 2011-11-02 05:59 ./usr/lib/R/site-library/Biobase/UnitTests/subListExtract_test.R
+-rwxr-xr-x root/root 213 2011-11-02 05:59 ./usr/lib/R/site-library/Biobase/UnitTests/runfile.sh
+-rw-r--r-- root/root 1515 2011-11-02 05:59 ./usr/lib/R/site-library/Biobase/UnitTests/matrix_test.R
+-rwxr-xr-x root/root 39 2011-11-02 05:59 ./usr/lib/R/site-library/Biobase/UnitTests/runall.sh
+-rw-r--r-- root/root 10497 2011-11-02 05:59 ./usr/lib/R/site-library/Biobase/UnitTests/AnnotatedDataFrame_test.R
+-rw-r--r-- root/root 2040 2011-11-02 05:59 ./usr/lib/R/site-library/Biobase/UnitTests/unsaveSetSlot_test.R
+-rw-r--r-- root/root 318 2011-11-02 05:59 ./usr/lib/R/site-library/Biobase/UnitTests/Makefile
+-rw-r--r-- root/root 8317 2011-11-02 05:59 ./usr/lib/R/site-library/Biobase/UnitTests/NChannelSet_test.R
+-rw-r--r-- root/root 2035 2011-11-02 05:59 ./usr/lib/R/site-library/Biobase/UnitTests/AssayData_test.R
+-rw-r--r-- root/root 4598 2011-11-02 05:59 ./usr/lib/R/site-library/Biobase/UnitTests/data.frame_test.R
+-rw-r--r-- root/root 1257 2011-11-02 05:59 ./usr/lib/R/site-library/Biobase/UnitTests/utilities.R
+-rw-r--r-- root/root 6194 2011-11-02 05:59 ./usr/lib/R/site-library/Biobase/UnitTests/ExpressionSet_test.R
+-rw-r--r-- root/root 951 2011-11-02 05:59 ./usr/lib/R/site-library/Biobase/UnitTests/cache_test.R
+-rw-r--r-- root/root 180 2011-11-02 05:59 ./usr/lib/R/site-library/Biobase/UnitTests/checkClass_test.R
+-rw-r--r-- root/root 2096 2011-11-02 05:59 ./usr/lib/R/site-library/Biobase/UnitTests/esApply_test.R
+-rw-r--r-- root/root 20153 2011-11-02 05:59 ./usr/lib/R/site-library/Biobase/UnitTests/EsetSubclasses_test.R
+-rw-r--r-- root/root 580 2011-11-02 05:59 ./usr/lib/R/site-library/Biobase/UnitTests/SnpSet_test.R
+-rw-r--r-- root/root 629 2011-11-02 05:59 ./usr/lib/R/site-library/Biobase/UnitTests/DataClasses_test.R
+-rw-r--r-- root/root 5015 2011-11-02 05:59 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_test.R
+-rw-r--r-- root/root 477 2011-11-02 05:59 ./usr/lib/R/site-library/Biobase/UnitTests/runalltests.R
+-rw-r--r-- root/root 3234 2011-11-02 05:59 ./usr/lib/R/site-library/Biobase/NAMESPACE
+drwxr-xr-x root/root 0 2011-11-02 05:59 ./usr/lib/R/site-library/Biobase/extdata/
+-rw-r--r-- root/root 715 2011-11-02 05:59 ./usr/lib/R/site-library/Biobase/extdata/pData.txt
+-rw-r--r-- root/root 109039 2011-11-02 05:59 ./usr/lib/R/site-library/Biobase/extdata/exprsData.txt
+drwxr-xr-x root/root 0 2011-11-02 05:59 ./usr/lib/R/site-library/Biobase/doc/
+-rw-r--r-- root/root 5030 2011-11-02 05:59 ./usr/lib/R/site-library/Biobase/doc/Qviews.Rnw
+-rw-r--r-- root/root 71355 2011-11-02 05:59 ./usr/lib/R/site-library/Biobase/doc/Bioconductor.pdf
+-rw-r--r-- root/root 6628 2011-11-02 05:59 ./usr/lib/R/site-library/Biobase/doc/ExpressionSetIntroduction.R
+-rw-r--r-- root/root 3987 2011-11-02 05:59 ./usr/lib/R/site-library/Biobase/doc/Qviews.R
+-rw-r--r-- root/root 72358 2011-11-02 05:59 ./usr/lib/R/site-library/Biobase/doc/Qviews.pdf
+-rw-r--r-- root/root 246002 2011-11-02 05:59 ./usr/lib/R/site-library/Biobase/doc/BiobaseDevelopment.pdf
+-rw-r--r-- root/root 56138 2011-11-02 05:59 ./usr/lib/R/site-library/Biobase/doc/HowTo.pdf
+-rw-r--r-- root/root 1591 2011-11-02 05:59 ./usr/lib/R/site-library/Biobase/doc/esApply.R
+-rw-r--r-- root/root 206 2011-11-02 05:59 ./usr/lib/R/site-library/Biobase/doc/HowTo.R
+-rw-r--r-- root/root 103681 2011-11-02 05:59 ./usr/lib/R/site-library/Biobase/doc/esApply.pdf
+-rw-r--r-- root/root 18062 2011-11-02 05:59 ./usr/lib/R/site-library/Biobase/doc/ExpressionSetIntroduction.Rnw
+-rw-r--r-- root/root 3727 2011-11-02 05:59 ./usr/lib/R/site-library/Biobase/doc/esApply.Rnw
+-rw-r--r-- root/root 220 2011-11-02 05:59 ./usr/lib/R/site-library/Biobase/doc/Bioconductor.R
+-rw-r--r-- root/root 3428 2011-11-02 05:59 ./usr/lib/R/site-library/Biobase/doc/index.html
+-rw-r--r-- root/root 3067 2011-11-02 05:59 ./usr/lib/R/site-library/Biobase/doc/Bioconductor.Rnw
+drwxr-xr-x root/root 0 2011-11-02 05:59 ./usr/lib/R/site-library/Biobase/doc/legacy/
+-rw-r--r-- root/root 13630 2011-11-02 05:59 ./usr/lib/R/site-library/Biobase/doc/legacy/Biobase.Rnw
+-rw-r--r-- root/root 180675 2011-11-02 05:59 ./usr/lib/R/site-library/Biobase/doc/ExpressionSetIntroduction.pdf
+-rw-r--r-- root/root 8004 2011-11-02 05:59 ./usr/lib/R/site-library/Biobase/doc/BiobaseDevelopment.R
+-rw-r--r-- root/root 28377 2011-11-02 05:59 ./usr/lib/R/site-library/Biobase/doc/BiobaseDevelopment.Rnw
+-rw-r--r-- root/root 3048 2011-11-02 05:59 ./usr/lib/R/site-library/Biobase/doc/HowTo.Rnw
+-rw-r--r-- root/root 1258 2011-11-02 05:59 ./usr/lib/R/site-library/Biobase/DESCRIPTION
+drwxr-xr-x root/root 0 2011-11-02 05:59 ./usr/lib/R/site-library/Biobase/Code/
+drwxr-xr-x root/root 0 2011-11-02 05:59 ./usr/lib/R/site-library/Biobase/Code/R/
+-rw-r--r-- root/root 91 2011-11-02 05:59 ./usr/lib/R/site-library/Biobase/Code/R/get at PKGNAME@.R
+drwxr-xr-x root/root 0 2011-11-02 05:59 ./usr/lib/R/site-library/Biobase/Code/man/
+-rw-r--r-- root/root 487 2011-11-02 05:59 ./usr/lib/R/site-library/Biobase/Code/man/@PKGNAME at .Rd
+-rw-r--r-- root/root 350 2011-11-02 05:59 ./usr/lib/R/site-library/Biobase/Code/man/get at PKGNAME@.Rd
+-rw-r--r-- root/root 201 2011-11-02 05:59 ./usr/lib/R/site-library/Biobase/Code/DESCRIPTION
+drwxr-xr-x root/root 0 2011-11-02 05:59 ./usr/lib/R/site-library/Biobase/Meta/
+-rw-r--r-- root/root 1445 2011-11-02 05:59 ./usr/lib/R/site-library/Biobase/Meta/nsInfo.rds
+-rw-r--r-- root/root 475 2011-11-02 05:59 ./usr/lib/R/site-library/Biobase/Meta/vignette.rds
+-rw-r--r-- root/root 5810 2011-11-02 05:59 ./usr/lib/R/site-library/Biobase/Meta/hsearch.rds
+-rw-r--r-- root/root 3554 2011-11-02 05:59 ./usr/lib/R/site-library/Biobase/Meta/links.rds
+-rw-r--r-- root/root 997 2011-11-02 05:59 ./usr/lib/R/site-library/Biobase/Meta/package.rds
+-rw-r--r-- root/root 323 2011-11-02 05:59 ./usr/lib/R/site-library/Biobase/Meta/data.rds
+-rw-r--r-- root/root 5798 2011-11-02 05:59 ./usr/lib/R/site-library/Biobase/Meta/Rd.rds
+-rw-r--r-- root/root 650 2011-11-02 05:59 ./usr/lib/R/site-library/Biobase/CITATION
+-rw-r--r-- root/root 516 2011-11-02 05:59 ./usr/lib/R/site-library/Biobase/testClass.R
+drwxr-xr-x root/root 0 2011-11-02 05:59 ./usr/lib/R/site-library/Biobase/ExpressionSet/
+drwxr-xr-x root/root 0 2011-11-02 05:59 ./usr/lib/R/site-library/Biobase/ExpressionSet/man/
+-rw-r--r-- root/root 180 2011-11-02 05:59 ./usr/lib/R/site-library/Biobase/ExpressionSet/man/@PKGNAME at .Rd
+-rw-r--r-- root/root 212 2011-11-02 05:59 ./usr/lib/R/site-library/Biobase/ExpressionSet/DESCRIPTION
+drwxr-xr-x root/root 0 2011-11-02 05:59 ./usr/share/
+drwxr-xr-x root/root 0 2011-11-02 05:59 ./usr/share/doc/
+drwxr-xr-x root/root 0 2011-11-02 05:59 ./usr/share/doc/r-bioc-biobase/
+-rw-r--r-- root/root 1380 2011-10-31 23:32 ./usr/share/doc/r-bioc-biobase/NEWS.gz
+-rw-r--r-- root/root 392 2011-11-02 05:59 ./usr/share/doc/r-bioc-biobase/README.Debian
+-rw-r--r-- root/root 380 2011-11-02 05:59 ./usr/share/doc/r-bioc-biobase/changelog.Debian.gz
+-rw-r--r-- root/root 10574 2011-11-02 05:59 ./usr/share/doc/r-bioc-biobase/copyright
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -950,7 +1014,7 @@ Built successfully
│ Post Build │
└──────────────────────────────────────────────────────────────────────────────┘
-Purging /var/lib/schroot/mount/sid-s390-sbuild-05799c4d-4d67-483d-abc5-acba85333ce8/build/buildd-r-bioc-biobase_2.12.2-1-s390-bX2NUy
+Purging /var/lib/schroot/mount/sid-s390-sbuild-a1094b7a-8321-4747-ad4d-e570c6b95361/build/buildd-r-bioc-biobase_2.14.0-1-s390-OYpSsq
Not cleaning session: cloned chroot in use
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -958,18 +1022,18 @@ Not cleaning session: cloned chroot in use
└──────────────────────────────────────────────────────────────────────────────┘
Architecture: s390
-Build-Space: 10096
-Build-Time: 20
+Build-Space: 9144
+Build-Time: 19
Distribution: sid
-Install-Time: 53
-Job: r-bioc-biobase_2.12.2-1
+Install-Time: 39
+Job: r-bioc-biobase_2.14.0-1
Package: r-bioc-biobase
-Package-Time: 108
-Source-Version: 2.12.2-1
-Space: 10096
+Package-Time: 105
+Source-Version: 2.14.0-1
+Space: 9144
Status: successful
-Version: 2.12.2-1
+Version: 2.14.0-1
────────────────────────────────────────────────────────────────────────────────
-Finished at 20110804-0026
-Build needed 00:01:48, 10096k disc space
+Finished at 20111102-0559
+Build needed 00:01:45, 9144k disc space
Signature with key '2D941D26' requested:
diff --git a/sparc.log b/sparc.log
index 867238c..660f8a5 100644
--- a/sparc.log
+++ b/sparc.log
@@ -1,4 +1,4 @@
-From buildd at schroeder.debian.org Thu Aug 04 00:32:04 2011
+From buildd at schroeder.debian.org Wed Nov 02 06:05:15 2011
Return-path: <buildd at schroeder.debian.org>
Received: from merikanto.debian.org ([2001:858:2:2:216:35ff:fec4:a49a])
from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
@@ -6,27 +6,27 @@ Received: from merikanto.debian.org ([2001:858:2:2:216:35ff:fec4:a49a])
EMAIL=hostmaster at merikanto.debian.org (verified)
by grieg.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
(Exim 4.72) (envelope-from <buildd at schroeder.debian.org>)
- id 1Qolr2-00050S-68
- for logs at buildd.debian.org; Thu, 04 Aug 2011 00:32:04 +0000
+ id 1RLTwp-0007e4-Pc
+ for logs at buildd.debian.org; Wed, 02 Nov 2011 06:05:15 +0000
Received: from schroeder.debian.org ([193.198.184.11])
from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
CN=schroeder.debian.org,
EMAIL=hostmaster at schroeder.debian.org (verified)
by merikanto.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
(Exim 4.72) (envelope-from <buildd at schroeder.debian.org>)
- id 1Qolr0-0000M4-Rn
- for logs at buildd.debian.org; Thu, 04 Aug 2011 00:32:03 +0000
+ id 1RLTwp-0007gN-8f
+ for logs at buildd.debian.org; Wed, 02 Nov 2011 06:05:15 +0000
Received: from buildd by schroeder.debian.org with local (Exim 4.72)
(envelope-from <buildd at schroeder.debian.org>)
- id 1Qolqx-00018T-LN; Thu, 04 Aug 2011 00:31:59 +0000
-Message-Id: <E1Qolqx-00018T-LN at schroeder.debian.org>
+ id 1RLTwn-0006yg-IO; Wed, 02 Nov 2011 06:05:13 +0000
+Message-Id: <E1RLTwn-0006yg-IO at schroeder.debian.org>
MIME-Version: 1.0
Content-Transfer-Encoding: binary
X-Mailer: MIME::Lite 3.027 (F2.77; B3.08; Q3.08)
-Date: Thu, 4 Aug 2011 00:31:59 +0000
+Date: Wed, 2 Nov 2011 06:05:13 +0000
From: buildd on schroeder <buildd at schroeder.debian.org>
To: logs at buildd.debian.org,buildd-admin at schroeder.debian.org
-Subject: Log for successful build of r-bioc-biobase_2.12.2-1 on sparc
+Subject: Log for successful build of r-bioc-biobase_2.14.0-1 on sparc
(dist=sid)
Key-Id: 7C392B18
Delivered-To: logs at buildd.debian.org
@@ -34,38 +34,38 @@ Delivered-To: logs at buildd.debian.org
sbuild (Debian sbuild) 0.61.0 (23 Feb 2011) on schroeder.debian.org
╔══════════════════════════════════════════════════════════════════════════════╗
-║ r-bioc-biobase 2.12.2-1 (sparc) 04 Aug 2011 00:26 ║
+║ r-bioc-biobase 2.14.0-1 (sparc) 02 Nov 2011 05:59 ║
╚══════════════════════════════════════════════════════════════════════════════╝
Package: r-bioc-biobase
-Version: 2.12.2-1
-Source Version: 2.12.2-1
+Version: 2.14.0-1
+Source Version: 2.14.0-1
Architecture: sparc
-Get:1 http://ftp.carnet.hr unstable InRelease [146 kB]
+Get:1 http://ftp.hr.debian.org unstable InRelease [146 kB]
Get:2 http://incoming.debian.org unstable InRelease [146 kB]
-Get:3 http://ftp.carnet.hr unstable/main Sources [5403 kB]
-Get:4 http://ftp.carnet.hr unstable/contrib Sources [51.3 kB]
+Get:3 http://ftp.hr.debian.org unstable/main Sources [5884 kB]
+Get:4 http://ftp.hr.debian.org unstable/contrib Sources [56.9 kB]
+Get:5 http://ftp.hr.debian.org unstable/non-free Sources [104 kB]
Ign http://incoming.debian.org InRelease
-Get:5 http://ftp.carnet.hr unstable/non-free Sources [96.3 kB]
Get:6 http://incoming.debian.org Release.gpg [836 B]
-Get:7 http://incoming.debian.org Release [1604 B]
-Get:8 http://ftp.carnet.hr unstable/main sparc Packages [7409 kB]
-Get:9 http://incoming.debian.org unstable/main Sources [5403 kB]
-Get:10 http://ftp.carnet.hr unstable/contrib sparc Packages [53.3 kB]
-Ign http://ftp.carnet.hr unstable/contrib TranslationIndex
-Get:11 http://ftp.carnet.hr unstable/main TranslationIndex [2045 B]
-Get:12 http://incoming.debian.org unstable/contrib Sources [51.3 kB]
-Get:13 http://incoming.debian.org unstable/non-free Sources [96.3 kB]
-Get:14 http://incoming.debian.org unstable/main sparc Packages [7409 kB]
-Ign http://ftp.carnet.hr unstable/contrib Translation-en
-Get:15 http://incoming.debian.org unstable/contrib sparc Packages [53.3 kB]
+Get:7 http://ftp.hr.debian.org unstable/main sparc Packages [7652 kB]
+Get:8 http://incoming.debian.org Release [1604 B]
+Get:9 http://incoming.debian.org unstable/main Sources [5884 kB]
+Get:10 http://ftp.hr.debian.org unstable/contrib sparc Packages [55.5 kB]
+Ign http://ftp.hr.debian.org unstable/contrib TranslationIndex
+Get:11 http://ftp.hr.debian.org unstable/main TranslationIndex [2045 B]
+Ign http://ftp.hr.debian.org unstable/contrib Translation-en
+Get:12 http://incoming.debian.org unstable/contrib Sources [56.9 kB]
+Get:13 http://incoming.debian.org unstable/non-free Sources [104 kB]
+Get:14 http://incoming.debian.org unstable/main sparc Packages [7652 kB]
+Get:15 http://incoming.debian.org unstable/contrib sparc Packages [55.5 kB]
Ign http://incoming.debian.org unstable/contrib TranslationIndex
Get:16 http://incoming.debian.org unstable/main TranslationIndex [2045 B]
-Get:17 http://incoming.debian.org Sources [30.7 kB]
-Get:18 http://incoming.debian.org Packages [218 kB]
+Get:17 http://incoming.debian.org Sources [49.2 kB]
+Get:18 http://incoming.debian.org Packages [352 kB]
Ign http://incoming.debian.org Translation-en
Ign http://incoming.debian.org unstable/contrib Translation-en
-Fetched 26.6 MB in 27s (964 kB/s)
+Fetched 28.2 MB in 30s (930 kB/s)
Reading package lists...
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -86,11 +86,11 @@ Building dependency tree...
Reading state information...
NOTICE: 'r-bioc-biobase' packaging is maintained in the 'Git' version control system at:
git://git.debian.org/git/debian-med/r-bioc-biobase.git
-Need to get 2229 kB of source archives.
-Get:1 http://incoming.debian.org/buildd-unstable/ r-bioc-biobase 2.12.2-1 (dsc) [1944 B]
-Get:2 http://incoming.debian.org/buildd-unstable/ r-bioc-biobase 2.12.2-1 (tar) [2222 kB]
-Get:3 http://incoming.debian.org/buildd-unstable/ r-bioc-biobase 2.12.2-1 (diff) [5417 B]
-Fetched 2229 kB in 2s (850 kB/s)
+Need to get 1934 kB of source archives.
+Get:1 http://incoming.debian.org/buildd-unstable/ r-bioc-biobase 2.14.0-1 (dsc) [2004 B]
+Get:2 http://incoming.debian.org/buildd-unstable/ r-bioc-biobase 2.14.0-1 (tar) [1926 kB]
+Get:3 http://incoming.debian.org/buildd-unstable/ r-bioc-biobase 2.14.0-1 (diff) [5645 B]
+Fetched 1934 kB in 2s (736 kB/s)
Download complete and in download only mode
Check arch
@@ -104,85 +104,89 @@ Check arch
Build-Depends: build-essential, fakeroot
Checking for already installed dependencies...
build-essential: already installed (11.5)
-fakeroot: already installed (1.16-1)
+fakeroot: already installed (1.18.1-1)
Checking for dependency conflicts...
Installing positive dependencies:
Reading package lists...
Building dependency tree...
Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 20 not upgraded.
+0 upgraded, 0 newly installed, 0 to remove and 10 not upgraded.
Removing negative dependencies:
Reading package lists...
Building dependency tree...
Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 20 not upgraded.
+0 upgraded, 0 newly installed, 0 to remove and 10 not upgraded.
Checking correctness of dependencies...
┌──────────────────────────────────────────────────────────────────────────────┐
│ Install r-bioc-biobase build dependencies (internal resolver) │
└──────────────────────────────────────────────────────────────────────────────┘
-Build-Depends: base-files, base-passwd, bash, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, ncurses-base, ncurses-bin, perl-base, sed, login, sysvinit-utils, sysvinit, tar, bsdutils, mount, util-linux, libc6-dev | libc-dev, libc6-dev-sparc64, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), cdbs, debhelper (>= 8), r-base-dev
+Build-Depends: base-files, base-passwd, bash, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, ncurses-base, ncurses-bin, perl-base, sed, login, sysvinit-utils, sysvinit, tar, bsdutils, mount, util-linux, libc6-dev | libc-dev, libc6-dev-sparc64, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), cdbs, debhelper (>= 8), r-base-dev (>= 2.10)
Checking for already installed dependencies...
-base-files: already installed (6.4)
+base-files: already installed (6.5)
base-passwd: already installed (3.5.23)
bash: already installed (4.1-3)
-coreutils: already installed (8.5-1)
-dash: already installed (0.5.5.1-7.4)
-debianutils: already installed (4.0.2)
-diffutils: already installed (1:3.0-1)
-dpkg: already installed (1.16.0.3)
-e2fsprogs: already installed (1.42~WIP-2011-07-02-1)
+coreutils: already installed (8.13-3)
+dash: already installed (0.5.7-2)
+debianutils: already installed (4.0.4)
+diffutils: already installed (1:3.2-1)
+dpkg: already installed (1.16.1.1)
+e2fsprogs: already installed (1.42~WIP-2011-10-16-1)
findutils: already installed (4.4.2-1+b2)
-grep: already installed (2.9-1)
+grep: already installed (2.9-2)
gzip: already installed (1.4-1)
hostname: already installed (3.06)
-ncurses-base: already installed (5.9-1)
-ncurses-bin: already installed (5.9-1)
-perl-base: already installed (5.12.4-1)
+ncurses-base: already installed (5.9-2)
+ncurses-bin: already installed (5.9-2)
+perl-base: already installed (5.12.4-6)
sed: already installed (4.2.1-9)
login: already installed (1:4.1.4.2+svn3283-3)
-sysvinit-utils: already installed (2.88dsf-13.11)
-sysvinit: already installed (2.88dsf-13.11)
-tar: already installed (1.25-3)
-bsdutils: already installed (1:2.19.1-4)
-mount: already installed (2.19.1-4)
-util-linux: already installed (2.19.1-4)
-libc6-dev: already installed (2.13-11)
-libc6-dev-sparc64: already installed (2.13-11)
-gcc: already installed (4:4.6.1-2 >= 4:4.4.3 is satisfied)
-g++: already installed (4:4.6.1-2 >= 4:4.4.3 is satisfied)
+sysvinit-utils: already installed (2.88dsf-13.12)
+sysvinit: already installed (2.88dsf-13.12)
+tar: already installed (1.26-2)
+bsdutils: already installed (1:2.19.1-5)
+mount: already installed (2.19.1-5)
+util-linux: already installed (2.19.1-5)
+libc6-dev: already installed (2.13-21)
+libc6-dev-sparc64: already installed (2.13-21)
+gcc: already installed (4:4.6.1-3 >= 4:4.4.3 is satisfied)
+g++: already installed (4:4.6.1-3 >= 4:4.4.3 is satisfied)
make: already installed (3.81-8.1)
-dpkg-dev: already installed (1.16.0.3 >= 1.13.5 is satisfied)
+dpkg-dev: already installed (1.16.1.1 >= 1.13.5 is satisfied)
cdbs: missing
debhelper: missing
-Using default version 8.9.3
+Using default version 8.9.8
r-base-dev: missing
+Using default version 2.14.0-1
Checking for dependency conflicts...
Installing positive dependencies: cdbs debhelper r-base-dev
Reading package lists...
Building dependency tree...
Reading state information...
The following extra packages will be installed:
- bsdmainutils dpatch file fontconfig fontconfig-config gettext gettext-base
- gfortran gfortran-4.6 groff-base html2text intltool-debian libblas-dev
- libblas3gf libbz2-dev libcairo2 libcroco3 libdatrie1 libexpat1
- libfontconfig1 libfreetype6 libgfortran3 libglib2.0-0 libice6 libjpeg62
- libjpeg8 libjpeg8-dev liblapack-dev liblapack3gf libmagic1 libncurses5-dev
- libpango1.0-0 libpaper-utils libpaper1 libpcre3 libpcre3-dev libpcrecpp0
- libpipeline1 libpixman-1-0 libpng12-0 libpng12-dev libreadline-dev
- libreadline6-dev libsm6 libthai-data libthai0 libtiff4 libunistring0
- libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6
- libxext6 libxft2 libxml2 libxrender1 libxss1 libxt6 man-db po-debconf
- r-base-core tcl8.5 tk8.5 ttf-dejavu-core ucf unzip x11-common xdg-utils zip
- zlib1g-dev
+ bsdmainutils cpp-4.6 dpatch file fontconfig fontconfig-config g++-4.6
+ gcc-4.6 gcc-4.6-base gettext gettext-base gfortran gfortran-4.6 groff-base
+ html2text intltool-debian libblas-dev libblas3gf libbz2-dev libcairo2
+ libcroco3 libdatrie1 libexpat1 libfontconfig1 libfreetype6 libgcc1
+ libgfortran3 libglib2.0-0 libgomp1 libice6 libjpeg8 libjpeg8-dev
+ liblapack-dev liblapack3gf libmagic1 libncurses5-dev libpango1.0-0
+ libpaper-utils libpaper1 libpcre3 libpcre3-dev libpcrecpp0 libpipeline1
+ libpixman-1-0 libpng12-0 libpng12-dev libreadline-dev libreadline6-dev
+ libsm6 libstdc++6 libstdc++6-4.6-dev libthai-data libthai0 libtiff4
+ libtinfo-dev libunistring0 libx11-6 libx11-data libxau6 libxcb-render0
+ libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxrender1 libxss1
+ libxt6 man-db po-debconf r-base-core tcl8.5 tk8.5 ttf-dejavu-core ucf unzip
+ x11-common xdg-utils zip zlib1g-dev
Suggested packages:
- wamerican wordlist whois vacation devscripts dh-make curl defoma gettext-doc
- gfortran-multilib gfortran-doc gfortran-4.6-multilib gfortran-4.6-doc
- libgfortran3-dbg groff ncurses-doc ttf-baekmuk ttf-arphic-gbsn00lp
- ttf-arphic-bsmi00lp ttf-arphic-gkai00mp ttf-arphic-bkai00mp less www-browser
- libmail-box-perl r-doc-info r-doc-pdf r-mathlib r-base-html tclreadline
- gvfs-bin
+ wamerican wordlist whois vacation devscripts gcc-4.6-locales dh-make curl
+ defoma g++-4.6-multilib gcc-4.6-doc libstdc++6-4.6-dbg gcc-4.6-multilib
+ libmudflap0-4.6-dev libgcc1-dbg libgomp1-dbg libquadmath-dbg libmudflap0-dbg
+ binutils-gold gettext-doc gfortran-multilib gfortran-doc
+ gfortran-4.6-multilib gfortran-4.6-doc libgfortran3-dbg groff ncurses-doc
+ ttf-baekmuk ttf-arphic-gbsn00lp ttf-arphic-bsmi00lp ttf-arphic-gkai00mp
+ ttf-arphic-bkai00mp libstdc++6-4.6-doc less www-browser libmail-box-perl
+ r-doc-info r-doc-pdf r-mathlib r-base-html tclreadline gvfs-bin
Recommended packages:
autotools-dev patchutils autopoint libglib2.0-data shared-mime-info
x-ttcidfont-conf xml-core libmail-sendmail-perl r-recommended r-doc-html
@@ -191,286 +195,329 @@ The following NEW packages will be installed:
bsdmainutils cdbs debhelper dpatch file fontconfig fontconfig-config gettext
gettext-base gfortran gfortran-4.6 groff-base html2text intltool-debian
libblas-dev libblas3gf libbz2-dev libcairo2 libcroco3 libdatrie1 libexpat1
- libfontconfig1 libfreetype6 libgfortran3 libglib2.0-0 libice6 libjpeg62
- libjpeg8 libjpeg8-dev liblapack-dev liblapack3gf libmagic1 libncurses5-dev
+ libfontconfig1 libfreetype6 libgfortran3 libglib2.0-0 libice6 libjpeg8
+ libjpeg8-dev liblapack-dev liblapack3gf libmagic1 libncurses5-dev
libpango1.0-0 libpaper-utils libpaper1 libpcre3 libpcre3-dev libpcrecpp0
libpipeline1 libpixman-1-0 libpng12-0 libpng12-dev libreadline-dev
- libreadline6-dev libsm6 libthai-data libthai0 libtiff4 libunistring0
- libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6
- libxext6 libxft2 libxml2 libxrender1 libxss1 libxt6 man-db po-debconf
- r-base-core r-base-dev tcl8.5 tk8.5 ttf-dejavu-core ucf unzip x11-common
- xdg-utils zip zlib1g-dev
-0 upgraded, 76 newly installed, 0 to remove and 20 not upgraded.
-Need to get 49.9 MB of archives.
-After this operation, 118 MB of additional disk space will be used.
-Get:1 http://ftp.carnet.hr/debian/ unstable/main libpipeline1 sparc 1.2.0-3 [36.0 kB]
-Get:2 http://ftp.carnet.hr/debian/ unstable/main libdatrie1 sparc 0.2.4-3 [25.3 kB]
-Get:3 http://ftp.carnet.hr/debian/ unstable/main libexpat1 sparc 2.0.1-7 [131 kB]
-Get:4 http://ftp.carnet.hr/debian/ unstable/main libfreetype6 sparc 2.4.4-2 [386 kB]
-Get:5 http://ftp.carnet.hr/debian/ unstable/main ucf all 3.0025+nmu2 [70.6 kB]
-Get:6 http://ftp.carnet.hr/debian/ unstable/main ttf-dejavu-core all 2.33-1 [1550 kB]
-Get:7 http://ftp.carnet.hr/debian/ unstable/main fontconfig-config all 2.8.0-3 [221 kB]
-Get:8 http://ftp.carnet.hr/debian/ unstable/main libfontconfig1 sparc 2.8.0-3 [277 kB]
-Get:9 http://ftp.carnet.hr/debian/ unstable/main libgfortran3 sparc 4.6.1-5 [260 kB]
-Get:10 http://ftp.carnet.hr/debian/ unstable/main x11-common all 1:7.6+7 [275 kB]
-Get:11 http://ftp.carnet.hr/debian/ unstable/main libice6 sparc 2:1.0.7-2 [50.9 kB]
-Get:12 http://ftp.carnet.hr/debian/ unstable/main libpixman-1-0 sparc 0.22.2-1 [357 kB]
-Get:13 http://ftp.carnet.hr/debian/ unstable/main libpng12-0 sparc 1.2.46-3 [179 kB]
-Get:14 http://ftp.carnet.hr/debian/ unstable/main libxau6 sparc 1:1.0.6-3 [16.1 kB]
-Get:15 http://ftp.carnet.hr/debian/ unstable/main libxdmcp6 sparc 1:1.1.0-3 [21.9 kB]
-Get:16 http://ftp.carnet.hr/debian/ unstable/main libxcb1 sparc 1.7-3 [41.0 kB]
-Get:17 http://ftp.carnet.hr/debian/ unstable/main libx11-data all 2:1.4.4-1 [183 kB]
-Get:18 http://ftp.carnet.hr/debian/ unstable/main libx11-6 sparc 2:1.4.4-1 [831 kB]
-Get:19 http://ftp.carnet.hr/debian/ unstable/main libxcb-render0 sparc 1.7-3 [15.5 kB]
-Get:20 http://ftp.carnet.hr/debian/ unstable/main libxcb-shm0 sparc 1.7-3 [9284 B]
-Get:21 http://ftp.carnet.hr/debian/ unstable/main libxrender1 sparc 1:0.9.6-2 [28.8 kB]
-Get:22 http://ftp.carnet.hr/debian/ unstable/main libcairo2 sparc 1.10.2-6.1 [912 kB]
-Get:23 http://ftp.carnet.hr/debian/ unstable/main libpcre3 sparc 8.12-3 [265 kB]
-Get:24 http://ftp.carnet.hr/debian/ unstable/main libglib2.0-0 sparc 2.28.6-1 [1556 kB]
-Get:25 http://ftp.carnet.hr/debian/ unstable/main libthai-data all 0.1.15-2 [201 kB]
-Get:26 http://ftp.carnet.hr/debian/ unstable/main libthai0 sparc 0.1.15-2 [41.6 kB]
-Get:27 http://ftp.carnet.hr/debian/ unstable/main libxft2 sparc 2.2.0-3 [55.0 kB]
-Get:28 http://ftp.carnet.hr/debian/ unstable/main fontconfig sparc 2.8.0-3 [334 kB]
-Get:29 http://ftp.carnet.hr/debian/ unstable/main libpango1.0-0 sparc 1.28.4-2 [400 kB]
-Get:30 http://ftp.carnet.hr/debian/ unstable/main libsm6 sparc 2:1.2.0-2 [28.6 kB]
-Get:31 http://ftp.carnet.hr/debian/ unstable/main libxext6 sparc 2:1.3.0-3 [47.5 kB]
-Get:32 http://ftp.carnet.hr/debian/ unstable/main libxt6 sparc 1:1.1.1-2 [184 kB]
-Get:33 http://ftp.carnet.hr/debian/ unstable/main bsdmainutils sparc 8.2.3 [206 kB]
-Get:34 http://ftp.carnet.hr/debian/ unstable/main groff-base sparc 1.21-6 [1155 kB]
-Get:35 http://ftp.carnet.hr/debian/ unstable/main man-db sparc 2.6.0.2-2 [1005 kB]
-Get:36 http://ftp.carnet.hr/debian/ unstable/main libmagic1 sparc 5.04-5+b1 [239 kB]
-Get:37 http://ftp.carnet.hr/debian/ unstable/main file sparc 5.04-5+b1 [49.6 kB]
-Get:38 http://ftp.carnet.hr/debian/ unstable/main gettext-base sparc 0.18.1.1-3 [140 kB]
-Get:39 http://ftp.carnet.hr/debian/ unstable/main libxml2 sparc 2.7.8.dfsg-4 [816 kB]
-Get:40 http://ftp.carnet.hr/debian/ unstable/main html2text sparc 1.3.2a-15 [100 kB]
-Get:41 http://ftp.carnet.hr/debian/ unstable/main libcroco3 sparc 0.6.2-1 [119 kB]
-Get:42 http://ftp.carnet.hr/debian/ unstable/main libunistring0 sparc 0.9.3-4 [424 kB]
-Get:43 http://ftp.carnet.hr/debian/ unstable/main gettext sparc 0.18.1.1-3 [2006 kB]
-Get:44 http://ftp.carnet.hr/debian/ unstable/main intltool-debian all 0.35.0+20060710.1 [30.8 kB]
-Get:45 http://ftp.carnet.hr/debian/ unstable/main po-debconf all 1.0.16+nmu1 [223 kB]
-Get:46 http://ftp.carnet.hr/debian/ unstable/main debhelper all 8.9.3 [561 kB]
-Get:47 http://ftp.carnet.hr/debian/ unstable/main cdbs all 0.4.96 [75.8 kB]
-Get:48 http://ftp.carnet.hr/debian/ unstable/main dpatch all 2.0.31 [92.3 kB]
-Get:49 http://ftp.carnet.hr/debian/ unstable/main gfortran-4.6 sparc 4.6.1-5 [4147 kB]
-Get:50 http://ftp.carnet.hr/debian/ unstable/main gfortran sparc 4:4.6.1-2 [1124 B]
-Get:51 http://ftp.carnet.hr/debian/ unstable/main libblas3gf sparc 1.2-8 [200 kB]
-Get:52 http://ftp.carnet.hr/debian/ unstable/main libblas-dev sparc 1.2-8 [209 kB]
-Get:53 http://ftp.carnet.hr/debian/ unstable/main libbz2-dev sparc 1.0.5-6 [36.6 kB]
-Get:54 http://ftp.carnet.hr/debian/ unstable/main libjpeg62 sparc 6b1-2 [87.2 kB]
-Get:55 http://ftp.carnet.hr/debian/ unstable/main libjpeg8 sparc 8c-2 [136 kB]
-Get:56 http://ftp.carnet.hr/debian/ unstable/main libjpeg8-dev sparc 8c-2 [239 kB]
-Get:57 http://ftp.carnet.hr/debian/ unstable/main liblapack3gf sparc 3.3.0-4 [3978 kB]
-Get:58 http://ftp.carnet.hr/debian/ unstable/main liblapack-dev sparc 3.3.0-4 [4300 kB]
-Get:59 http://ftp.carnet.hr/debian/ unstable/main libncurses5-dev sparc 5.9-1 [481 kB]
-Get:60 http://ftp.carnet.hr/debian/ unstable/main libpaper1 sparc 1.1.24+nmu1 [21.1 kB]
-Get:61 http://ftp.carnet.hr/debian/ unstable/main libpaper-utils sparc 1.1.24+nmu1 [17.9 kB]
-Get:62 http://ftp.carnet.hr/debian/ unstable/main libpcrecpp0 sparc 8.12-3 [112 kB]
-Get:63 http://ftp.carnet.hr/debian/ unstable/main libpcre3-dev sparc 8.12-3 [312 kB]
-Get:64 http://ftp.carnet.hr/debian/ unstable/main zlib1g-dev sparc 1:1.2.3.4.dfsg-3 [189 kB]
-Get:65 http://ftp.carnet.hr/debian/ unstable/main libpng12-dev sparc 1.2.46-3 [262 kB]
-Get:66 http://ftp.carnet.hr/debian/ unstable/main libreadline6-dev sparc 6.2-2 [258 kB]
-Get:67 http://ftp.carnet.hr/debian/ unstable/main libreadline-dev sparc 6.2-2 [880 B]
-Get:68 http://ftp.carnet.hr/debian/ unstable/main libtiff4 sparc 3.9.5-1 [192 kB]
-Get:69 http://ftp.carnet.hr/debian/ unstable/main libxss1 sparc 1:1.2.1-1 [15.9 kB]
-Get:70 http://ftp.carnet.hr/debian/ unstable/main zip sparc 3.0-4 [335 kB]
-Get:71 http://ftp.carnet.hr/debian/ unstable/main unzip sparc 6.0-5 [191 kB]
-Get:72 http://ftp.carnet.hr/debian/ unstable/main xdg-utils all 1.1.0~rc1-2 [70.2 kB]
-Get:73 http://ftp.carnet.hr/debian/ unstable/main tcl8.5 sparc 8.5.10-1 [1599 kB]
-Get:74 http://ftp.carnet.hr/debian/ unstable/main tk8.5 sparc 8.5.10-1 [1143 kB]
-Get:75 http://ftp.carnet.hr/debian/ unstable/main r-base-core sparc 2.13.1-1 [15.1 MB]
-Get:76 http://ftp.carnet.hr/debian/ unstable/main r-base-dev all 2.13.1-1 [3490 B]
+ libreadline6-dev libsm6 libthai-data libthai0 libtiff4 libtinfo-dev
+ libunistring0 libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0
+ libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxrender1 libxss1 libxt6 man-db
+ po-debconf r-base-core r-base-dev tcl8.5 tk8.5 ttf-dejavu-core ucf unzip
+ x11-common xdg-utils zip zlib1g-dev
+The following packages will be upgraded:
+ cpp-4.6 g++-4.6 gcc-4.6 gcc-4.6-base libgcc1 libgomp1 libstdc++6
+ libstdc++6-4.6-dev
+8 upgraded, 76 newly installed, 0 to remove and 2 not upgraded.
+Need to get 68.6 MB of archives.
+After this operation, 115 MB of additional disk space will be used.
+Get:1 http://ftp.hr.debian.org/debian/ unstable/main libgomp1 sparc 4.6.2-3 [21.8 kB]
+Get:2 http://ftp.hr.debian.org/debian/ unstable/main gcc-4.6-base sparc 4.6.2-3 [136 kB]
+Get:3 http://ftp.hr.debian.org/debian/ unstable/main libgcc1 sparc 1:4.6.2-3 [29.6 kB]
+Get:4 http://ftp.hr.debian.org/debian/ unstable/main cpp-4.6 sparc 4.6.2-3 [3532 kB]
+Get:5 http://ftp.hr.debian.org/debian/ unstable/main libstdc++6-4.6-dev sparc 4.6.2-3 [1653 kB]
+Get:6 http://ftp.hr.debian.org/debian/ unstable/main g++-4.6 sparc 4.6.2-3 [5520 kB]
+Get:7 http://ftp.hr.debian.org/debian/ unstable/main gcc-4.6 sparc 4.6.2-3 [3704 kB]
+Get:8 http://ftp.hr.debian.org/debian/ unstable/main libstdc++6 sparc 4.6.2-3 [321 kB]
+Get:9 http://ftp.hr.debian.org/debian/ unstable/main libpipeline1 sparc 1.2.0-4 [34.9 kB]
+Get:10 http://ftp.hr.debian.org/debian/ unstable/main libpcre3 sparc 8.12-4 [231 kB]
+Get:11 http://ftp.hr.debian.org/debian/ unstable/main libglib2.0-0 sparc 2.28.8-1 [1508 kB]
+Get:12 http://ftp.hr.debian.org/debian/ unstable/main libxml2 sparc 2.7.8.dfsg-5 [816 kB]
+Get:13 http://ftp.hr.debian.org/debian/ unstable/main libcroco3 sparc 0.6.2-2 [106 kB]
+Get:14 http://ftp.hr.debian.org/debian/ unstable/main libdatrie1 sparc 0.2.4-3 [25.3 kB]
+Get:15 http://ftp.hr.debian.org/debian/ unstable/main libexpat1 sparc 2.0.1-7.1 [127 kB]
+Get:16 http://ftp.hr.debian.org/debian/ unstable/main libfreetype6 sparc 2.4.7-2 [400 kB]
+Get:17 http://ftp.hr.debian.org/debian/ unstable/main ucf all 3.0025+nmu2 [70.6 kB]
+Get:18 http://ftp.hr.debian.org/debian/ unstable/main ttf-dejavu-core all 2.33-2 [1552 kB]
+Get:19 http://ftp.hr.debian.org/debian/ unstable/main fontconfig-config all 2.8.0-3 [221 kB]
+Get:20 http://ftp.hr.debian.org/debian/ unstable/main libfontconfig1 sparc 2.8.0-3 [277 kB]
+Get:21 http://ftp.hr.debian.org/debian/ unstable/main libgfortran3 sparc 4.6.2-3 [260 kB]
+Get:22 http://ftp.hr.debian.org/debian/ unstable/main x11-common all 1:7.6+9 [276 kB]
+Get:23 http://ftp.hr.debian.org/debian/ unstable/main libice6 sparc 2:1.0.7-2 [50.9 kB]
+Get:24 http://ftp.hr.debian.org/debian/ unstable/main libpixman-1-0 sparc 0.23.8-1 [376 kB]
+Get:25 http://ftp.hr.debian.org/debian/ unstable/main libpng12-0 sparc 1.2.46-3 [179 kB]
+Get:26 http://ftp.hr.debian.org/debian/ unstable/main libxau6 sparc 1:1.0.6-3 [16.1 kB]
+Get:27 http://ftp.hr.debian.org/debian/ unstable/main libxdmcp6 sparc 1:1.1.0-3 [21.9 kB]
+Get:28 http://ftp.hr.debian.org/debian/ unstable/main libxcb1 sparc 1.7-3 [41.0 kB]
+Get:29 http://ftp.hr.debian.org/debian/ unstable/main libx11-data all 2:1.4.4-2 [183 kB]
+Get:30 http://ftp.hr.debian.org/debian/ unstable/main libx11-6 sparc 2:1.4.4-2 [830 kB]
+Get:31 http://ftp.hr.debian.org/debian/ unstable/main libxcb-render0 sparc 1.7-3 [15.5 kB]
+Get:32 http://ftp.hr.debian.org/debian/ unstable/main libxcb-shm0 sparc 1.7-3 [9284 B]
+Get:33 http://ftp.hr.debian.org/debian/ unstable/main libxrender1 sparc 1:0.9.6-2 [28.8 kB]
+Get:34 http://ftp.hr.debian.org/debian/ unstable/main libcairo2 sparc 1.10.2-6.1 [912 kB]
+Get:35 http://ftp.hr.debian.org/debian/ unstable/main libthai-data all 0.1.15-2 [201 kB]
+Get:36 http://ftp.hr.debian.org/debian/ unstable/main libthai0 sparc 0.1.15-2 [41.6 kB]
+Get:37 http://ftp.hr.debian.org/debian/ unstable/main libxft2 sparc 2.2.0-3 [55.0 kB]
+Get:38 http://ftp.hr.debian.org/debian/ unstable/main fontconfig sparc 2.8.0-3 [334 kB]
+Get:39 http://ftp.hr.debian.org/debian/ unstable/main libpango1.0-0 sparc 1.29.4-2 [416 kB]
+Get:40 http://ftp.hr.debian.org/debian/ unstable/main libpcrecpp0 sparc 8.12-4 [111 kB]
+Get:41 http://ftp.hr.debian.org/debian/ unstable/main libsm6 sparc 2:1.2.0-2 [28.6 kB]
+Get:42 http://ftp.hr.debian.org/debian/ unstable/main libjpeg8 sparc 8c-2 [136 kB]
+Get:43 http://ftp.hr.debian.org/debian/ unstable/main libtiff4 sparc 3.9.5-2 [186 kB]
+Get:44 http://ftp.hr.debian.org/debian/ unstable/main libunistring0 sparc 0.9.3-5 [416 kB]
+Get:45 http://ftp.hr.debian.org/debian/ unstable/main libxext6 sparc 2:1.3.0-3 [47.5 kB]
+Get:46 http://ftp.hr.debian.org/debian/ unstable/main libxss1 sparc 1:1.2.1-2 [15.9 kB]
+Get:47 http://ftp.hr.debian.org/debian/ unstable/main libxt6 sparc 1:1.1.1-2 [184 kB]
+Get:48 http://ftp.hr.debian.org/debian/ unstable/main bsdmainutils sparc 8.2.3 [206 kB]
+Get:49 http://ftp.hr.debian.org/debian/ unstable/main groff-base sparc 1.21-6 [1155 kB]
+Get:50 http://ftp.hr.debian.org/debian/ unstable/main man-db sparc 2.6.0.2-2 [1005 kB]
+Get:51 http://ftp.hr.debian.org/debian/ unstable/main libmagic1 sparc 5.09-2 [245 kB]
+Get:52 http://ftp.hr.debian.org/debian/ unstable/main file sparc 5.09-2 [51.5 kB]
+Get:53 http://ftp.hr.debian.org/debian/ unstable/main gettext-base sparc 0.18.1.1-5 [140 kB]
+Get:54 http://ftp.hr.debian.org/debian/ unstable/main cdbs all 0.4.99 [77.1 kB]
+Get:55 http://ftp.hr.debian.org/debian/ unstable/main html2text sparc 1.3.2a-15 [100 kB]
+Get:56 http://ftp.hr.debian.org/debian/ unstable/main gettext sparc 0.18.1.1-5 [1983 kB]
+Get:57 http://ftp.hr.debian.org/debian/ unstable/main intltool-debian all 0.35.0+20060710.1 [30.8 kB]
+Get:58 http://ftp.hr.debian.org/debian/ unstable/main po-debconf all 1.0.16+nmu1 [223 kB]
+Get:59 http://ftp.hr.debian.org/debian/ unstable/main debhelper all 8.9.8 [552 kB]
+Get:60 http://ftp.hr.debian.org/debian/ unstable/main dpatch all 2.0.33 [95.9 kB]
+Get:61 http://ftp.hr.debian.org/debian/ unstable/main gfortran-4.6 sparc 4.6.2-3 [4144 kB]
+Get:62 http://ftp.hr.debian.org/debian/ unstable/main gfortran sparc 4:4.6.1-3 [1132 B]
+Get:63 http://ftp.hr.debian.org/debian/ unstable/main libblas3gf sparc 1.2.20110419-2 [188 kB]
+Get:64 http://ftp.hr.debian.org/debian/ unstable/main libblas-dev sparc 1.2.20110419-2 [200 kB]
+Get:65 http://ftp.hr.debian.org/debian/ unstable/main libbz2-dev sparc 1.0.5-7 [35.8 kB]
+Get:66 http://ftp.hr.debian.org/debian/ unstable/main libjpeg8-dev sparc 8c-2 [239 kB]
+Get:67 http://ftp.hr.debian.org/debian/ unstable/main liblapack3gf sparc 3.3.1-1 [3975 kB]
+Get:68 http://ftp.hr.debian.org/debian/ unstable/main liblapack-dev sparc 3.3.1-1 [4389 kB]
+Get:69 http://ftp.hr.debian.org/debian/ unstable/main libtinfo-dev sparc 5.9-2 [67.9 kB]
+Get:70 http://ftp.hr.debian.org/debian/ unstable/main libncurses5-dev sparc 5.9-2 [415 kB]
+Get:71 http://ftp.hr.debian.org/debian/ unstable/main libpaper1 sparc 1.1.24+nmu1 [21.1 kB]
+Get:72 http://ftp.hr.debian.org/debian/ unstable/main libpaper-utils sparc 1.1.24+nmu1 [17.9 kB]
+Get:73 http://ftp.hr.debian.org/debian/ unstable/main libpcre3-dev sparc 8.12-4 [312 kB]
+Get:74 http://ftp.hr.debian.org/debian/ unstable/main zlib1g-dev sparc 1:1.2.3.4.dfsg-3 [189 kB]
+Get:75 http://ftp.hr.debian.org/debian/ unstable/main libpng12-dev sparc 1.2.46-3 [262 kB]
+Get:76 http://ftp.hr.debian.org/debian/ unstable/main libreadline6-dev sparc 6.2-7 [258 kB]
+Get:77 http://ftp.hr.debian.org/debian/ unstable/main libreadline-dev sparc 6.2-7 [892 B]
+Get:78 http://ftp.hr.debian.org/debian/ unstable/main zip sparc 3.0-4 [335 kB]
+Get:79 http://ftp.hr.debian.org/debian/ unstable/main unzip sparc 6.0-5 [191 kB]
+Get:80 http://ftp.hr.debian.org/debian/ unstable/main xdg-utils all 1.1.0~rc1-2 [70.2 kB]
+Get:81 http://ftp.hr.debian.org/debian/ unstable/main tcl8.5 sparc 8.5.10-1 [1599 kB]
+Get:82 http://ftp.hr.debian.org/debian/ unstable/main tk8.5 sparc 8.5.10-1 [1143 kB]
+Get:83 http://ftp.hr.debian.org/debian/ unstable/main r-base-core sparc 2.14.0-1 [19.0 MB]
+Get:84 http://ftp.hr.debian.org/debian/ unstable/main r-base-dev all 2.14.0-1 [3488 B]
debconf: delaying package configuration, since apt-utils is not installed
-Fetched 49.9 MB in 32s (1552 kB/s)
-Selecting previously deselected package libpipeline1.
-(Reading database ... 10922 files and directories currently installed.)
-Unpacking libpipeline1 (from .../libpipeline1_1.2.0-3_sparc.deb) ...
-Selecting previously deselected package libdatrie1.
+Fetched 68.6 MB in 34s (1963 kB/s)
+(Reading database ... 10913 files and directories currently installed.)
+Preparing to replace libgomp1 4.6.2-1 (using .../libgomp1_4.6.2-3_sparc.deb) ...
+Unpacking replacement libgomp1 ...
+Preparing to replace gcc-4.6-base 4.6.2-1 (using .../gcc-4.6-base_4.6.2-3_sparc.deb) ...
+Unpacking replacement gcc-4.6-base ...
+Setting up gcc-4.6-base (4.6.2-3) ...
+(Reading database ... 10913 files and directories currently installed.)
+Preparing to replace libgcc1 1:4.6.2-1 (using .../libgcc1_1%3a4.6.2-3_sparc.deb) ...
+Unpacking replacement libgcc1 ...
+Setting up libgcc1 (1:4.6.2-3) ...
+(Reading database ... 10913 files and directories currently installed.)
+Preparing to replace cpp-4.6 4.6.2-1 (using .../cpp-4.6_4.6.2-3_sparc.deb) ...
+Unpacking replacement cpp-4.6 ...
+Preparing to replace libstdc++6-4.6-dev 4.6.2-1 (using .../libstdc++6-4.6-dev_4.6.2-3_sparc.deb) ...
+Unpacking replacement libstdc++6-4.6-dev ...
+Preparing to replace g++-4.6 4.6.2-1 (using .../g++-4.6_4.6.2-3_sparc.deb) ...
+Unpacking replacement g++-4.6 ...
+Preparing to replace gcc-4.6 4.6.2-1 (using .../gcc-4.6_4.6.2-3_sparc.deb) ...
+Unpacking replacement gcc-4.6 ...
+Preparing to replace libstdc++6 4.6.2-1 (using .../libstdc++6_4.6.2-3_sparc.deb) ...
+Unpacking replacement libstdc++6 ...
+Setting up libstdc++6 (4.6.2-3) ...
+Selecting previously unselected package libpipeline1.
+(Reading database ... 10913 files and directories currently installed.)
+Unpacking libpipeline1 (from .../libpipeline1_1.2.0-4_sparc.deb) ...
+Selecting previously unselected package libpcre3.
+Unpacking libpcre3 (from .../libpcre3_8.12-4_sparc.deb) ...
+Selecting previously unselected package libglib2.0-0.
+Unpacking libglib2.0-0 (from .../libglib2.0-0_2.28.8-1_sparc.deb) ...
+Selecting previously unselected package libxml2.
+Unpacking libxml2 (from .../libxml2_2.7.8.dfsg-5_sparc.deb) ...
+Selecting previously unselected package libcroco3.
+Unpacking libcroco3 (from .../libcroco3_0.6.2-2_sparc.deb) ...
+Selecting previously unselected package libdatrie1.
Unpacking libdatrie1 (from .../libdatrie1_0.2.4-3_sparc.deb) ...
-Selecting previously deselected package libexpat1.
-Unpacking libexpat1 (from .../libexpat1_2.0.1-7_sparc.deb) ...
-Selecting previously deselected package libfreetype6.
-Unpacking libfreetype6 (from .../libfreetype6_2.4.4-2_sparc.deb) ...
-Selecting previously deselected package ucf.
+Selecting previously unselected package libexpat1.
+Unpacking libexpat1 (from .../libexpat1_2.0.1-7.1_sparc.deb) ...
+Selecting previously unselected package libfreetype6.
+Unpacking libfreetype6 (from .../libfreetype6_2.4.7-2_sparc.deb) ...
+Selecting previously unselected package ucf.
Unpacking ucf (from .../ucf_3.0025+nmu2_all.deb) ...
Moving old data out of the way
-Selecting previously deselected package ttf-dejavu-core.
-Unpacking ttf-dejavu-core (from .../ttf-dejavu-core_2.33-1_all.deb) ...
-Selecting previously deselected package fontconfig-config.
+Selecting previously unselected package ttf-dejavu-core.
+Unpacking ttf-dejavu-core (from .../ttf-dejavu-core_2.33-2_all.deb) ...
+Selecting previously unselected package fontconfig-config.
Unpacking fontconfig-config (from .../fontconfig-config_2.8.0-3_all.deb) ...
-Selecting previously deselected package libfontconfig1.
+Selecting previously unselected package libfontconfig1.
Unpacking libfontconfig1 (from .../libfontconfig1_2.8.0-3_sparc.deb) ...
-Selecting previously deselected package libgfortran3.
-Unpacking libgfortran3 (from .../libgfortran3_4.6.1-5_sparc.deb) ...
-Selecting previously deselected package x11-common.
-Unpacking x11-common (from .../x11-common_1%3a7.6+7_all.deb) ...
-Selecting previously deselected package libice6.
+Selecting previously unselected package libgfortran3.
+Unpacking libgfortran3 (from .../libgfortran3_4.6.2-3_sparc.deb) ...
+Selecting previously unselected package x11-common.
+Unpacking x11-common (from .../x11-common_1%3a7.6+9_all.deb) ...
+Selecting previously unselected package libice6.
Unpacking libice6 (from .../libice6_2%3a1.0.7-2_sparc.deb) ...
-Selecting previously deselected package libpixman-1-0.
-Unpacking libpixman-1-0 (from .../libpixman-1-0_0.22.2-1_sparc.deb) ...
-Selecting previously deselected package libpng12-0.
+Selecting previously unselected package libpixman-1-0.
+Unpacking libpixman-1-0 (from .../libpixman-1-0_0.23.8-1_sparc.deb) ...
+Selecting previously unselected package libpng12-0.
Unpacking libpng12-0 (from .../libpng12-0_1.2.46-3_sparc.deb) ...
-Selecting previously deselected package libxau6.
+Selecting previously unselected package libxau6.
Unpacking libxau6 (from .../libxau6_1%3a1.0.6-3_sparc.deb) ...
-Selecting previously deselected package libxdmcp6.
+Selecting previously unselected package libxdmcp6.
Unpacking libxdmcp6 (from .../libxdmcp6_1%3a1.1.0-3_sparc.deb) ...
-Selecting previously deselected package libxcb1.
+Selecting previously unselected package libxcb1.
Unpacking libxcb1 (from .../libxcb1_1.7-3_sparc.deb) ...
-Selecting previously deselected package libx11-data.
-Unpacking libx11-data (from .../libx11-data_2%3a1.4.4-1_all.deb) ...
-Selecting previously deselected package libx11-6.
-Unpacking libx11-6 (from .../libx11-6_2%3a1.4.4-1_sparc.deb) ...
-Selecting previously deselected package libxcb-render0.
+Selecting previously unselected package libx11-data.
+Unpacking libx11-data (from .../libx11-data_2%3a1.4.4-2_all.deb) ...
+Selecting previously unselected package libx11-6.
+Unpacking libx11-6 (from .../libx11-6_2%3a1.4.4-2_sparc.deb) ...
+Selecting previously unselected package libxcb-render0.
Unpacking libxcb-render0 (from .../libxcb-render0_1.7-3_sparc.deb) ...
-Selecting previously deselected package libxcb-shm0.
+Selecting previously unselected package libxcb-shm0.
Unpacking libxcb-shm0 (from .../libxcb-shm0_1.7-3_sparc.deb) ...
-Selecting previously deselected package libxrender1.
+Selecting previously unselected package libxrender1.
Unpacking libxrender1 (from .../libxrender1_1%3a0.9.6-2_sparc.deb) ...
-Selecting previously deselected package libcairo2.
+Selecting previously unselected package libcairo2.
Unpacking libcairo2 (from .../libcairo2_1.10.2-6.1_sparc.deb) ...
-Selecting previously deselected package libpcre3.
-Unpacking libpcre3 (from .../libpcre3_8.12-3_sparc.deb) ...
-Selecting previously deselected package libglib2.0-0.
-Unpacking libglib2.0-0 (from .../libglib2.0-0_2.28.6-1_sparc.deb) ...
-Selecting previously deselected package libthai-data.
+Selecting previously unselected package libthai-data.
Unpacking libthai-data (from .../libthai-data_0.1.15-2_all.deb) ...
-Selecting previously deselected package libthai0.
+Selecting previously unselected package libthai0.
Unpacking libthai0 (from .../libthai0_0.1.15-2_sparc.deb) ...
-Selecting previously deselected package libxft2.
+Selecting previously unselected package libxft2.
Unpacking libxft2 (from .../libxft2_2.2.0-3_sparc.deb) ...
-Selecting previously deselected package fontconfig.
+Selecting previously unselected package fontconfig.
Unpacking fontconfig (from .../fontconfig_2.8.0-3_sparc.deb) ...
-Selecting previously deselected package libpango1.0-0.
-Unpacking libpango1.0-0 (from .../libpango1.0-0_1.28.4-2_sparc.deb) ...
-Selecting previously deselected package libsm6.
+Selecting previously unselected package libpango1.0-0.
+Unpacking libpango1.0-0 (from .../libpango1.0-0_1.29.4-2_sparc.deb) ...
+Selecting previously unselected package libpcrecpp0.
+Unpacking libpcrecpp0 (from .../libpcrecpp0_8.12-4_sparc.deb) ...
+Selecting previously unselected package libsm6.
Unpacking libsm6 (from .../libsm6_2%3a1.2.0-2_sparc.deb) ...
-Selecting previously deselected package libxext6.
+Selecting previously unselected package libjpeg8.
+Unpacking libjpeg8 (from .../libjpeg8_8c-2_sparc.deb) ...
+Selecting previously unselected package libtiff4.
+Unpacking libtiff4 (from .../libtiff4_3.9.5-2_sparc.deb) ...
+Selecting previously unselected package libunistring0.
+Unpacking libunistring0 (from .../libunistring0_0.9.3-5_sparc.deb) ...
+Selecting previously unselected package libxext6.
Unpacking libxext6 (from .../libxext6_2%3a1.3.0-3_sparc.deb) ...
-Selecting previously deselected package libxt6.
+Selecting previously unselected package libxss1.
+Unpacking libxss1 (from .../libxss1_1%3a1.2.1-2_sparc.deb) ...
+Selecting previously unselected package libxt6.
Unpacking libxt6 (from .../libxt6_1%3a1.1.1-2_sparc.deb) ...
-Selecting previously deselected package bsdmainutils.
+Selecting previously unselected package bsdmainutils.
Unpacking bsdmainutils (from .../bsdmainutils_8.2.3_sparc.deb) ...
-Selecting previously deselected package groff-base.
+Selecting previously unselected package groff-base.
Unpacking groff-base (from .../groff-base_1.21-6_sparc.deb) ...
-Selecting previously deselected package man-db.
+Selecting previously unselected package man-db.
Unpacking man-db (from .../man-db_2.6.0.2-2_sparc.deb) ...
-Selecting previously deselected package libmagic1.
-Unpacking libmagic1 (from .../libmagic1_5.04-5+b1_sparc.deb) ...
-Selecting previously deselected package file.
-Unpacking file (from .../file_5.04-5+b1_sparc.deb) ...
-Selecting previously deselected package gettext-base.
-Unpacking gettext-base (from .../gettext-base_0.18.1.1-3_sparc.deb) ...
-Selecting previously deselected package libxml2.
-Unpacking libxml2 (from .../libxml2_2.7.8.dfsg-4_sparc.deb) ...
-Selecting previously deselected package html2text.
+Selecting previously unselected package libmagic1.
+Unpacking libmagic1 (from .../libmagic1_5.09-2_sparc.deb) ...
+Selecting previously unselected package file.
+Unpacking file (from .../archives/file_5.09-2_sparc.deb) ...
+Selecting previously unselected package gettext-base.
+Unpacking gettext-base (from .../gettext-base_0.18.1.1-5_sparc.deb) ...
+Selecting previously unselected package cdbs.
+Unpacking cdbs (from .../archives/cdbs_0.4.99_all.deb) ...
+Selecting previously unselected package html2text.
Unpacking html2text (from .../html2text_1.3.2a-15_sparc.deb) ...
-Selecting previously deselected package libcroco3.
-Unpacking libcroco3 (from .../libcroco3_0.6.2-1_sparc.deb) ...
-Selecting previously deselected package libunistring0.
-Unpacking libunistring0 (from .../libunistring0_0.9.3-4_sparc.deb) ...
-Selecting previously deselected package gettext.
-Unpacking gettext (from .../gettext_0.18.1.1-3_sparc.deb) ...
-Selecting previously deselected package intltool-debian.
+Selecting previously unselected package gettext.
+Unpacking gettext (from .../gettext_0.18.1.1-5_sparc.deb) ...
+Selecting previously unselected package intltool-debian.
Unpacking intltool-debian (from .../intltool-debian_0.35.0+20060710.1_all.deb) ...
-Selecting previously deselected package po-debconf.
+Selecting previously unselected package po-debconf.
Unpacking po-debconf (from .../po-debconf_1.0.16+nmu1_all.deb) ...
-Selecting previously deselected package debhelper.
-Unpacking debhelper (from .../debhelper_8.9.3_all.deb) ...
-Selecting previously deselected package cdbs.
-Unpacking cdbs (from .../archives/cdbs_0.4.96_all.deb) ...
-Selecting previously deselected package dpatch.
-Unpacking dpatch (from .../archives/dpatch_2.0.31_all.deb) ...
-Selecting previously deselected package gfortran-4.6.
-Unpacking gfortran-4.6 (from .../gfortran-4.6_4.6.1-5_sparc.deb) ...
-Selecting previously deselected package gfortran.
-Unpacking gfortran (from .../gfortran_4%3a4.6.1-2_sparc.deb) ...
-Selecting previously deselected package libblas3gf.
-Unpacking libblas3gf (from .../libblas3gf_1.2-8_sparc.deb) ...
-Selecting previously deselected package libblas-dev.
-Unpacking libblas-dev (from .../libblas-dev_1.2-8_sparc.deb) ...
-Selecting previously deselected package libbz2-dev.
-Unpacking libbz2-dev (from .../libbz2-dev_1.0.5-6_sparc.deb) ...
-Selecting previously deselected package libjpeg62.
-Unpacking libjpeg62 (from .../libjpeg62_6b1-2_sparc.deb) ...
-Selecting previously deselected package libjpeg8.
-Unpacking libjpeg8 (from .../libjpeg8_8c-2_sparc.deb) ...
-Selecting previously deselected package libjpeg8-dev.
+Selecting previously unselected package debhelper.
+Unpacking debhelper (from .../debhelper_8.9.8_all.deb) ...
+Selecting previously unselected package dpatch.
+Unpacking dpatch (from .../archives/dpatch_2.0.33_all.deb) ...
+Selecting previously unselected package gfortran-4.6.
+Unpacking gfortran-4.6 (from .../gfortran-4.6_4.6.2-3_sparc.deb) ...
+Selecting previously unselected package gfortran.
+Unpacking gfortran (from .../gfortran_4%3a4.6.1-3_sparc.deb) ...
+Selecting previously unselected package libblas3gf.
+Unpacking libblas3gf (from .../libblas3gf_1.2.20110419-2_sparc.deb) ...
+Selecting previously unselected package libblas-dev.
+Unpacking libblas-dev (from .../libblas-dev_1.2.20110419-2_sparc.deb) ...
+Selecting previously unselected package libbz2-dev.
+Unpacking libbz2-dev (from .../libbz2-dev_1.0.5-7_sparc.deb) ...
+Selecting previously unselected package libjpeg8-dev.
Unpacking libjpeg8-dev (from .../libjpeg8-dev_8c-2_sparc.deb) ...
-Selecting previously deselected package liblapack3gf.
-Unpacking liblapack3gf (from .../liblapack3gf_3.3.0-4_sparc.deb) ...
-Selecting previously deselected package liblapack-dev.
-Unpacking liblapack-dev (from .../liblapack-dev_3.3.0-4_sparc.deb) ...
-Selecting previously deselected package libncurses5-dev.
-Unpacking libncurses5-dev (from .../libncurses5-dev_5.9-1_sparc.deb) ...
-Selecting previously deselected package libpaper1.
+Selecting previously unselected package liblapack3gf.
+Unpacking liblapack3gf (from .../liblapack3gf_3.3.1-1_sparc.deb) ...
+Selecting previously unselected package liblapack-dev.
+Unpacking liblapack-dev (from .../liblapack-dev_3.3.1-1_sparc.deb) ...
+Selecting previously unselected package libtinfo-dev.
+Unpacking libtinfo-dev (from .../libtinfo-dev_5.9-2_sparc.deb) ...
+Selecting previously unselected package libncurses5-dev.
+Unpacking libncurses5-dev (from .../libncurses5-dev_5.9-2_sparc.deb) ...
+Selecting previously unselected package libpaper1.
Unpacking libpaper1 (from .../libpaper1_1.1.24+nmu1_sparc.deb) ...
-Selecting previously deselected package libpaper-utils.
+Selecting previously unselected package libpaper-utils.
Unpacking libpaper-utils (from .../libpaper-utils_1.1.24+nmu1_sparc.deb) ...
-Selecting previously deselected package libpcrecpp0.
-Unpacking libpcrecpp0 (from .../libpcrecpp0_8.12-3_sparc.deb) ...
-Selecting previously deselected package libpcre3-dev.
-Unpacking libpcre3-dev (from .../libpcre3-dev_8.12-3_sparc.deb) ...
-Selecting previously deselected package zlib1g-dev.
+Selecting previously unselected package libpcre3-dev.
+Unpacking libpcre3-dev (from .../libpcre3-dev_8.12-4_sparc.deb) ...
+Selecting previously unselected package zlib1g-dev.
Unpacking zlib1g-dev (from .../zlib1g-dev_1%3a1.2.3.4.dfsg-3_sparc.deb) ...
-Selecting previously deselected package libpng12-dev.
+Selecting previously unselected package libpng12-dev.
Unpacking libpng12-dev (from .../libpng12-dev_1.2.46-3_sparc.deb) ...
-Selecting previously deselected package libreadline6-dev.
-Unpacking libreadline6-dev (from .../libreadline6-dev_6.2-2_sparc.deb) ...
-Selecting previously deselected package libreadline-dev.
-Unpacking libreadline-dev (from .../libreadline-dev_6.2-2_sparc.deb) ...
-Selecting previously deselected package libtiff4.
-Unpacking libtiff4 (from .../libtiff4_3.9.5-1_sparc.deb) ...
-Selecting previously deselected package libxss1.
-Unpacking libxss1 (from .../libxss1_1%3a1.2.1-1_sparc.deb) ...
-Selecting previously deselected package zip.
+Selecting previously unselected package libreadline6-dev.
+Unpacking libreadline6-dev (from .../libreadline6-dev_6.2-7_sparc.deb) ...
+Selecting previously unselected package libreadline-dev.
+Unpacking libreadline-dev (from .../libreadline-dev_6.2-7_sparc.deb) ...
+Selecting previously unselected package zip.
Unpacking zip (from .../archives/zip_3.0-4_sparc.deb) ...
-Selecting previously deselected package unzip.
+Selecting previously unselected package unzip.
Unpacking unzip (from .../archives/unzip_6.0-5_sparc.deb) ...
-Selecting previously deselected package xdg-utils.
+Selecting previously unselected package xdg-utils.
Unpacking xdg-utils (from .../xdg-utils_1.1.0~rc1-2_all.deb) ...
-Selecting previously deselected package tcl8.5.
+Selecting previously unselected package tcl8.5.
Unpacking tcl8.5 (from .../tcl8.5_8.5.10-1_sparc.deb) ...
-Selecting previously deselected package tk8.5.
+Selecting previously unselected package tk8.5.
Unpacking tk8.5 (from .../tk8.5_8.5.10-1_sparc.deb) ...
-Selecting previously deselected package r-base-core.
-Unpacking r-base-core (from .../r-base-core_2.13.1-1_sparc.deb) ...
-Selecting previously deselected package r-base-dev.
-Unpacking r-base-dev (from .../r-base-dev_2.13.1-1_all.deb) ...
-Setting up libpipeline1 (1.2.0-3) ...
+Selecting previously unselected package r-base-core.
+Unpacking r-base-core (from .../r-base-core_2.14.0-1_sparc.deb) ...
+Selecting previously unselected package r-base-dev.
+Unpacking r-base-dev (from .../r-base-dev_2.14.0-1_all.deb) ...
+Setting up libgomp1 (4.6.2-3) ...
+Setting up cpp-4.6 (4.6.2-3) ...
+Setting up gcc-4.6 (4.6.2-3) ...
+Setting up libpipeline1 (1.2.0-4) ...
+Setting up libpcre3 (8.12-4) ...
+Setting up libglib2.0-0 (2.28.8-1) ...
+No schema files found: doing nothing.
+Setting up libxml2 (2.7.8.dfsg-5) ...
+Setting up libcroco3 (0.6.2-2) ...
Setting up libdatrie1 (0.2.4-3) ...
-Setting up libexpat1 (2.0.1-7) ...
-Setting up libfreetype6 (2.4.4-2) ...
+Setting up libexpat1 (2.0.1-7.1) ...
+Setting up libfreetype6 (2.4.7-2) ...
Setting up ucf (3.0025+nmu2) ...
-Setting up ttf-dejavu-core (2.33-1) ...
+Setting up ttf-dejavu-core (2.33-2) ...
Setting up fontconfig-config (2.8.0-3) ...
Setting up libfontconfig1 (2.8.0-3) ...
-Setting up libgfortran3 (4.6.1-5) ...
-Setting up x11-common (1:7.6+7) ...
+Setting up libgfortran3 (4.6.2-3) ...
+Setting up x11-common (1:7.6+9) ...
All runlevel operations denied by policy
invoke-rc.d: policy-rc.d denied execution of start.
Setting up libice6 (2:1.0.7-2) ...
-Setting up libpixman-1-0 (0.22.2-1) ...
+Setting up libpixman-1-0 (0.23.8-1) ...
Setting up libpng12-0 (1.2.46-3) ...
Setting up libxau6 (1:1.0.6-3) ...
Setting up libxdmcp6 (1:1.1.0-3) ...
Setting up libxcb1 (1.7-3) ...
-Setting up libx11-data (2:1.4.4-1) ...
-Setting up libx11-6 (2:1.4.4-1) ...
+Setting up libx11-data (2:1.4.4-2) ...
+Setting up libx11-6 (2:1.4.4-2) ...
Setting up libxcb-render0 (1.7-3) ...
Setting up libxcb-shm0 (1.7-3) ...
Setting up libxrender1 (1:0.9.6-2) ...
Setting up libcairo2 (1.10.2-6.1) ...
-Setting up libpcre3 (8.12-3) ...
-Setting up libglib2.0-0 (2.28.6-1) ...
-No schema files found: doing nothing.
Setting up libthai-data (0.1.15-2) ...
Setting up libthai0 (0.1.15-2) ...
Setting up libxft2 (2.2.0-3) ...
Setting up fontconfig (2.8.0-3) ...
Cleaning up old fontconfig caches... done.
Regenerating fonts cache... done.
-Setting up libpango1.0-0 (1.28.4-2) ...
+Setting up libpango1.0-0 (1.29.4-2) ...
+Setting up libpcrecpp0 (8.12-4) ...
Setting up libsm6 (2:1.2.0-2) ...
+Setting up libjpeg8 (8c-2) ...
+Setting up libtiff4 (3.9.5-2) ...
+Setting up libunistring0 (0.9.3-5) ...
Setting up libxext6 (2:1.3.0-3) ...
+Setting up libxss1 (1:1.2.1-2) ...
Setting up libxt6 (1:1.1.1-2) ...
Setting up bsdmainutils (8.2.3) ...
update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode.
@@ -478,47 +525,40 @@ update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in
Setting up groff-base (1.21-6) ...
Setting up man-db (2.6.0.2-2) ...
Building database of manual pages ...
-Setting up libmagic1 (5.04-5+b1) ...
-Setting up file (5.04-5+b1) ...
-Setting up gettext-base (0.18.1.1-3) ...
-Setting up libxml2 (2.7.8.dfsg-4) ...
+Setting up libmagic1 (5.09-2) ...
+Setting up file (5.09-2) ...
+Setting up gettext-base (0.18.1.1-5) ...
+Setting up cdbs (0.4.99) ...
Setting up html2text (1.3.2a-15) ...
-Setting up libcroco3 (0.6.2-1) ...
-Setting up libunistring0 (0.9.3-4) ...
-Setting up gettext (0.18.1.1-3) ...
+Setting up gettext (0.18.1.1-5) ...
Setting up intltool-debian (0.35.0+20060710.1) ...
Setting up po-debconf (1.0.16+nmu1) ...
-Setting up debhelper (8.9.3) ...
-Setting up cdbs (0.4.96) ...
-Setting up dpatch (2.0.31) ...
-Setting up gfortran-4.6 (4.6.1-5) ...
-Setting up gfortran (4:4.6.1-2) ...
+Setting up debhelper (8.9.8) ...
+Setting up dpatch (2.0.33) ...
+Setting up gfortran-4.6 (4.6.2-3) ...
+Setting up gfortran (4:4.6.1-3) ...
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode.
-Setting up libblas3gf (1.2-8) ...
+Setting up libblas3gf (1.2.20110419-2) ...
update-alternatives: using /usr/lib/libblas/libblas.so.3gf to provide /usr/lib/libblas.so.3gf (libblas.so.3gf) in auto mode.
-Setting up libblas-dev (1.2-8) ...
+Setting up libblas-dev (1.2.20110419-2) ...
update-alternatives: using /usr/lib/libblas/libblas.so to provide /usr/lib/libblas.so (libblas.so) in auto mode.
-Setting up libbz2-dev (1.0.5-6) ...
-Setting up libjpeg62 (6b1-2) ...
-Setting up libjpeg8 (8c-2) ...
+Setting up libbz2-dev (1.0.5-7) ...
Setting up libjpeg8-dev (8c-2) ...
-Setting up liblapack3gf (3.3.0-4) ...
+Setting up liblapack3gf (3.3.1-1) ...
update-alternatives: using /usr/lib/lapack/liblapack.so.3gf to provide /usr/lib/liblapack.so.3gf (liblapack.so.3gf) in auto mode.
-Setting up liblapack-dev (3.3.0-4) ...
+Setting up liblapack-dev (3.3.1-1) ...
update-alternatives: using /usr/lib/lapack/liblapack.so to provide /usr/lib/liblapack.so (liblapack.so) in auto mode.
-Setting up libncurses5-dev (5.9-1) ...
+Setting up libtinfo-dev (5.9-2) ...
+Setting up libncurses5-dev (5.9-2) ...
Setting up libpaper1 (1.1.24+nmu1) ...
Creating config file /etc/papersize with new version
Setting up libpaper-utils (1.1.24+nmu1) ...
-Setting up libpcrecpp0 (8.12-3) ...
-Setting up libpcre3-dev (8.12-3) ...
+Setting up libpcre3-dev (8.12-4) ...
Setting up zlib1g-dev (1:1.2.3.4.dfsg-3) ...
Setting up libpng12-dev (1.2.46-3) ...
-Setting up libreadline6-dev (6.2-2) ...
-Setting up libreadline-dev (6.2-2) ...
-Setting up libtiff4 (3.9.5-1) ...
-Setting up libxss1 (1:1.2.1-1) ...
+Setting up libreadline6-dev (6.2-7) ...
+Setting up libreadline-dev (6.2-7) ...
Setting up zip (3.0-4) ...
Setting up unzip (6.0-5) ...
Setting up xdg-utils (1.1.0~rc1-2) ...
@@ -526,20 +566,22 @@ Setting up tcl8.5 (8.5.10-1) ...
update-alternatives: using /usr/bin/tclsh8.5 to provide /usr/bin/tclsh (tclsh) in auto mode.
Setting up tk8.5 (8.5.10-1) ...
update-alternatives: using /usr/bin/wish8.5 to provide /usr/bin/wish (wish) in auto mode.
-Setting up r-base-core (2.13.1-1) ...
+Setting up r-base-core (2.14.0-1) ...
Setting R_PAPERSIZE_USER default to 'a4'
Creating config file /etc/R/Renviron with new version
-Setting up r-base-dev (2.13.1-1) ...
+Setting up r-base-dev (2.14.0-1) ...
+Setting up libstdc++6-4.6-dev (4.6.2-3) ...
+Setting up g++-4.6 (4.6.2-3) ...
Removing negative dependencies:
Reading package lists...
Building dependency tree...
Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 20 not upgraded.
+0 upgraded, 0 newly installed, 0 to remove and 2 not upgraded.
Checking correctness of dependencies...
Kernel: Linux 2.6.32-5-sparc64-smp sparc (sparc64)
-Toolchain package versions: binutils_2.21.53.20110720-1 dpkg-dev_1.16.0.3 g++-4.6_4.6.1-5 gcc-4.6_4.6.1-5 libc6-dev_2.13-11 libstdc++6_4.6.1-5 libstdc++6-4.6-dev_4.6.1-5 linux-libc-dev_3.0.0-1
-Package versions: apt_0.8.15.4 base-files_6.4 base-passwd_3.5.23 bash_4.1-3 binutils_2.21.53.20110720-1 bsdmainutils_8.2.3 bsdutils_1:2.19.1-4 build-essential_11.5 bzip2_1.0.5-6 cdbs_0.4.96 coreutils_8.5-1 cpp_4:4.6.1-2 cpp-4.6_4.6.1-5 dash_0.5.5.1-7.4 debconf_1.5.40 debfoster_2.7-1.1 debhelper_8.9.3 debian-archive-keyring_2010.08.28 debianutils_4.0.2 diffutils_1:3.0-1 dpatch_2.0.31 dpkg_1.16.0.3 dpkg-dev_1.16.0.3 e2fslibs_1.42~WIP-2011-07-02-1 e2fsprogs_1.42~WIP-2011-07-02-1 fakeroot_1.16-1 file_5.04-5+b1 findutils_4.4.2-1+b2 fontconfig_2.8.0-3 fontconfig-config_2.8.0-3 g++_4:4.6.1-2 g++-4.6_4.6.1-5 gcc_4:4.6.1-2 gcc-4.6_4.6.1-5 gcc-4.6-base_4.6.1-5 gettext_0.18.1.1-3 gettext-base_0.18.1.1-3 gfortran_4:4.6.1-2 gfortran-4.6_4.6.1-5 gnupg_1.4.11-3 gpgv_1.4.11-3 grep_2.9-1 groff-base_1.21-6 gzip_1.4-1 hostname_3.06 html2text_1.3.2a-15 initscripts_2.88dsf-13.11 insserv_1.14.0-2.1 intltool-debian_0.35.0+20060710.1 libacl1_2.2.51-3 libattr1_1:2.4.46-3 libblas-dev_1.2-8 libblas3gf_1.2-8 libblkid1_2.19.1-4 libbz2-1.0_1.0.5-6 libbz2-dev_1.0.5-6 libc-bin_2.13-11 libc-dev-bin_2.13-11 libc6_2.13-11 libc6-dev_2.13-11 libc6-dev-sparc64_2.13-11 libc6-sparc64_2.13-11 libcairo2_1.10.2-6.1 libcloog-ppl0_0.15.9-3 libcomerr2_1.42~WIP-2011-07-02-1 libcroco3_0.6.2-1 libdatrie1_0.2.4-3 libdb5.1_5.1.25-11 libdpkg-perl_1.16.0.3 libexpat1_2.0.1-7 libfontconfig1_2.8.0-3 libfreetype6_2.4.4-2 libgc1c2_1:7.1-8 libgcc1_1:4.6.1-5 libgdbm3_1.8.3-10 libgfortran3_4.6.1-5 libglib2.0-0_2.28.6-1 libgmp10_2:5.0.1+dfsg-7 libgmpxx4ldbl_2:5.0.1+dfsg-7 libgomp1_4.6.1-5 libice6_2:1.0.7-2 libjpeg62_6b1-2 libjpeg8_8c-2 libjpeg8-dev_8c-2 liblapack-dev_3.3.0-4 liblapack3gf_3.3.0-4 liblzma2_5.0.0-2 libmagic1_5.04-5+b1 libmount1_2.19.1-4 libmpc2_0.9-3 libmpfr4_3.0.1-5 libncurses5_5.9-1 libncurses5-dev_5.9-1 libpam-modules_1.1.3-2 libpam-modules-bin_1.1.3-2 libpam-runtime_1.1.3-2 libpam0g_1.1.3-2 libpango1.0-0_1.28.4-2 libpaper-utils_1.1.24+nmu1 libpaper1_1.1.24+nmu1 libpcre3_8.12-3 libpcre3-dev_8.12-3 libpcrecpp0_8.12-3 libpipeline1_1.2.0-3 libpixman-1-0_0.22.2-1 libpng12-0_1.2.46-3 libpng12-dev_1.2.46-3 libppl-c4_0.11.2-4 libppl9_0.11.2-4 libpwl5_0.11.2-4 libreadline-dev_6.2-2 libreadline6_6.2-2 libreadline6-dev_6.2-2 libselinux1_2.0.98-1.1 libsepol1_2.0.42-1 libsm6_2:1.2.0-2 libss2_1.42~WIP-2011-07-02-1 libstdc++6_4.6.1-5 libstdc++6-4.6-dev_4.6.1-5 libthai-data_0.1.15-2 libthai0_0.1.15-2 libtiff4_3.9.5-1 libtimedate-perl_1.2000-1 libunistring0_0.9.3-4 libusb-0.1-4_2:0.1.12-18 libuuid1_2.19.1-4 libx11-6_2:1.4.4-1 libx11-data_2:1.4.4-1 libxau6_1:1.0.6-3 libxcb-render0_1.7-3 libxcb-shm0_1.7-3 libxcb1_1.7-3 libxdmcp6_1:1.1.0-3 libxext6_2:1.3.0-3 libxft2_2.2.0-3 libxml2_2.7.8.dfsg-4 libxrender1_1:0.9.6-2 libxss1_1:1.2.1-1 libxt6_1:1.1.1-2 linux-libc-dev_3.0.0-1 login_1:4.1.4.2+svn3283-3 lsb-base_3.2-27 make_3.81-8.1 man-db_2.6.0.2-2 mawk_1.3.3-15+b1 mount_2.19.1-4 multiarch-support_2.13-11 ncurses-base_5.9-1 ncurses-bin_5.9-1 passwd_1:4.1.4.2+svn3283-3 patch_2.6.1-2 perl_5.12.4-1 perl-base_5.12.4-1 perl-modules_5.12.4-1 po-debconf_1.0.16+nmu1 r-base-core_2.13.1-1 r-base-dev_2.13.1-1 readline-common_6.2-2 sed_4.2.1-9 sensible-utils_0.0.6 sudo_1.7.4p6-1 sysv-rc_2.88dsf-13.11 sysvinit_2.88dsf-13.11 sysvinit-utils_2.88dsf-13.11 tar_1.25-3 tcl8.5_8.5.10-1 tk8.5_8.5.10-1 ttf-dejavu-core_2.33-1 tzdata_2011h-3 ucf_3.0025+nmu2 unzip_6.0-5 util-linux_2.19.1-4 x11-common_1:7.6+7 xdg-utils_1.1.0~rc1-2 xz-utils_5.0.0-2 zip_3.0-4 zlib1g_1:1.2.3.4.dfsg-3 zlib1g-dev_1:1.2.3.4.dfsg-3
+Toolchain package versions: binutils_2.21.90.20111025-1 dpkg-dev_1.16.1.1 g++-4.6_4.6.2-3 gcc-4.6_4.6.2-3 libc6-dev_2.13-21 libstdc++6_4.6.2-3 libstdc++6-4.6-dev_4.6.2-3 linux-libc-dev_3.0.0-5
+Package versions: apt_0.8.15.9 base-files_6.5 base-passwd_3.5.23 bash_4.1-3 binutils_2.21.90.20111025-1 bsdmainutils_8.2.3 bsdutils_1:2.19.1-5 build-essential_11.5 bzip2_1.0.5-7 cdbs_0.4.99 coreutils_8.13-3 cpp_4:4.6.1-3 cpp-4.6_4.6.2-3 dash_0.5.7-2 debconf_1.5.41 debfoster_2.7-1.1 debhelper_8.9.8 debian-archive-keyring_2010.08.28 debianutils_4.0.4 diffutils_1:3.2-1 dpatch_2.0.33 dpkg_1.16.1.1 dpkg-dev_1.16.1.1 e2fslibs_1.42~WIP-2011-10-16-1 e2fsprogs_1.42~WIP-2011-10-16-1 fakeroot_1.18.1-1 file_5.09-2 findutils_4.4.2-1+b2 fontconfig_2.8.0-3 fontconfig-config_2.8.0-3 g++_4:4.6.1-3 g++-4.6_4.6.2-3 gcc_4:4.6.1-3 gcc-4.6_4.6.2-3 gcc-4.6-base_4.6.2-3 gettext_0.18.1.1-5 gettext-base_0.18.1.1-5 gfortran_4:4.6.1-3 gfortran-4.6_4.6.2-3 gnupg_1.4.11-3 gpgv_1.4.11-3 grep_2.9-2 groff-base_1.21-6 gzip_1.4-1 hostname_3.06 html2text_1.3.2a-15 initscripts_2.88dsf-13.12 insserv_1.14.0-2.1 intltool-debian_0.35.0+20060710.1 libacl1_2.2.51-3 libattr1_1:2.4.46-3 libblas-dev_1.2.20110419-2 libblas3gf_1.2.20110419-2 libblkid1_2.19.1-5 libbz2-1.0_1.0.5-7 libbz2-dev_1.0.5-7 libc-bin_2.13-21 libc-dev-bin_2.13-21 libc6_2.13-21 libc6-dev_2.13-21 libc6-dev-sparc64_2.13-21 libc6-sparc64_2.13-21 libcairo2_1.10.2-6.1 libcomerr2_1.42~WIP-2011-10-16-1 libcroco3_0.6.2-2 libdatrie1_0.2.4-3 libdb5.1_5.1.25-11 libdpkg-perl_1.16.1.1 libexpat1_2.0.1-7.1 libfontconfig1_2.8.0-3 libfreetype6_2.4.7-2 libgc1c2_1:7.1-8 libgcc1_1:4.6.2-3 libgdbm3_1.8.3-10 libgfortran3_4.6.2-3 libglib2.0-0_2.28.8-1 libgmp10_2:5.0.2+dfsg-2 libgomp1_4.6.2-3 libice6_2:1.0.7-2 libjpeg8_8c-2 libjpeg8-dev_8c-2 liblapack-dev_3.3.1-1 liblapack3gf_3.3.1-1 liblzma5_5.1.1alpha+20110809-3 libmagic1_5.09-2 libmount1_2.19.1-5 libmpc2_0.9-4 libmpfr4_3.1.0-2 libncurses5_5.9-2 libncurses5-dev_5.9-2 libpam-modules_1.1.3-5 libpam-modules-bin_1.1.3-5 libpam-runtime_1.1.3-5 libpam0g_1.1.3-5 libpango1.0-0_1.29.4-2 libpaper-utils_1.1.24+nmu1 libpaper1_1.1.24+nmu1 libpcre3_8.12-4 libpcre3-dev_8.12-4 libpcrecpp0_8.12-4 libpipeline1_1.2.0-4 libpixman-1-0_0.23.8-1 libpng12-0_1.2.46-3 libpng12-dev_1.2.46-3 libreadline-dev_6.2-7 libreadline6_6.2-7 libreadline6-dev_6.2-7 libselinux1_2.1.0-3 libsepol1_2.1.0-1.1 libsm6_2:1.2.0-2 libss2_1.42~WIP-2011-10-16-1 libstdc++6_4.6.2-3 libstdc++6-4.6-dev_4.6.2-3 libthai-data_0.1.15-2 libthai0_0.1.15-2 libtiff4_3.9.5-2 libtimedate-perl_1.2000-1 libtinfo-dev_5.9-2 libtinfo5_5.9-2 libunistring0_0.9.3-5 libusb-0.1-4_2:0.1.12-19 libuuid1_2.19.1-5 libx11-6_2:1.4.4-2 libx11-data_2:1.4.4-2 libxau6_1:1.0.6-3 libxcb-render0_1.7-3 libxcb-shm0_1.7-3 libxcb1_1.7-3 libxdmcp6_1:1.1.0-3 libxext6_2:1.3.0-3 libxft2_2.2.0-3 libxml2_2.7.8.dfsg-5 libxrender1_1:0.9.6-2 libxss1_1:1.2.1-2 libxt6_1:1.1.1-2 linux-libc-dev_3.0.0-5 login_1:4.1.4.2+svn3283-3 lsb-base_3.2-28 make_3.81-8.1 man-db_2.6.0.2-2 mawk_1.3.3-16 mount_2.19.1-5 multiarch-support_2.13-21 ncurses-base_5.9-2 ncurses-bin_5.9-2 passwd_1:4.1.4.2+svn3283-3 patch_2.6.1-2 perl_5.12.4-6 perl-base_5.12.4-6 perl-modules_5.12.4-6 po-debconf_1.0.16+nmu1 r-base-core_2.14.0-1 r-base-dev_2.14.0-1 readline-common_6.2-7 sed_4.2.1-9 sensible-utils_0.0.6 sudo_1.8.3p1-1 sysv-rc_2.88dsf-13.12 sysvinit_2.88dsf-13.12 sysvinit-utils_2.88dsf-13.12 tar_1.26-2 tcl8.5_8.5.10-1 tk8.5_8.5.10-1 ttf-dejavu-core_2.33-2 tzdata_2011m-1 ucf_3.0025+nmu2 unzip_6.0-5 util-linux_2.19.1-5 x11-common_1:7.6+9 xdg-utils_1.1.0~rc1-2 xz-utils_5.1.1alpha+20110809-3 zip_3.0-4 zlib1g_1:1.2.3.4.dfsg-3 zlib1g-dev_1:1.2.3.4.dfsg-3
┌──────────────────────────────────────────────────────────────────────────────┐
│ Build │
@@ -550,12 +592,12 @@ Unpack source
─────────────
gpgv: keyblock resource `/home/buildd/.gnupg/trustedkeys.gpg': file open error
-gpgv: Signature made Thu Aug 4 00:12:34 2011 UTC using RSA key ID 2295D502
+gpgv: Signature made Wed Nov 2 05:31:37 2011 UTC using RSA key ID 2295D502
gpgv: Can't check signature: public key not found
-dpkg-source: warning: failed to verify signature on ./r-bioc-biobase_2.12.2-1.dsc
-dpkg-source: info: extracting r-bioc-biobase in r-bioc-biobase-2.12.2
-dpkg-source: info: unpacking r-bioc-biobase_2.12.2.orig.tar.gz
-dpkg-source: info: applying r-bioc-biobase_2.12.2-1.diff.gz
+dpkg-source: warning: failed to verify signature on ./r-bioc-biobase_2.14.0-1.dsc
+dpkg-source: info: extracting r-bioc-biobase in r-bioc-biobase-2.14.0
+dpkg-source: info: unpacking r-bioc-biobase_2.14.0.orig.tar.gz
+dpkg-source: info: applying r-bioc-biobase_2.14.0-1.diff.gz
Check disc space
────────────────
@@ -564,24 +606,19 @@ Check disc space
dpkg-buildpackage
─────────────────
-dpkg-buildpackage: export CFLAGS from dpkg-buildflags (origin: vendor): -g -O2
-dpkg-buildpackage: export CPPFLAGS from dpkg-buildflags (origin: vendor):
-dpkg-buildpackage: export CXXFLAGS from dpkg-buildflags (origin: vendor): -g -O2
-dpkg-buildpackage: export FFLAGS from dpkg-buildflags (origin: vendor): -g -O2
-dpkg-buildpackage: export LDFLAGS from dpkg-buildflags (origin: vendor):
dpkg-buildpackage: source package r-bioc-biobase
-dpkg-buildpackage: source version 2.12.2-1
- dpkg-source --before-build r-bioc-biobase-2.12.2
+dpkg-buildpackage: source version 2.14.0-1
+ dpkg-source --before-build r-bioc-biobase-2.14.0
dpkg-buildpackage: host architecture sparc
fakeroot debian/rules clean
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
test -x debian/rules
dh_testroot
/usr/bin/make -f debian/rules reverse-config
+make[1]: Entering directory `/build/buildd-r-bioc-biobase_2.14.0-1-sparc-gn9SaH/r-bioc-biobase-2.14.0'
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
-make[1]: Entering directory `/build/buildd-r-bioc-biobase_2.12.2-1-sparc-JfPk25/r-bioc-biobase-2.12.2'
make[1]: Nothing to be done for `reverse-config'.
-make[1]: Leaving directory `/build/buildd-r-bioc-biobase_2.12.2-1-sparc-JfPk25/r-bioc-biobase-2.12.2'
+make[1]: Leaving directory `/build/buildd-r-bioc-biobase_2.14.0-1-sparc-gn9SaH/r-bioc-biobase-2.14.0'
if [ "reverse-patches" = "reverse-patches" ]; then rm -f debian/stamp-patched; fi
patches:
if [ "reverse-patches" != "reverse-patches" ]; then touch debian/stamp-patched; fi
@@ -601,21 +638,22 @@ rm -f config.log config.status
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
test -x debian/rules
mkdir -p "."
+/usr/share/cdbs/1/rules/buildcore.mk:109: WARNING: DEB_DH_BUILDDEB_ARGS is a deprecated variable
/usr/bin/make -f debian/rules reverse-config
-make[1]: Entering directory `/build/buildd-r-bioc-biobase_2.12.2-1-sparc-JfPk25/r-bioc-biobase-2.12.2'
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
+make[1]: Entering directory `/build/buildd-r-bioc-biobase_2.14.0-1-sparc-gn9SaH/r-bioc-biobase-2.14.0'
make[1]: Nothing to be done for `reverse-config'.
-make[1]: Leaving directory `/build/buildd-r-bioc-biobase_2.12.2-1-sparc-JfPk25/r-bioc-biobase-2.12.2'
+make[1]: Leaving directory `/build/buildd-r-bioc-biobase_2.14.0-1-sparc-gn9SaH/r-bioc-biobase-2.14.0'
if [ "debian/stamp-patched" = "reverse-patches" ]; then rm -f debian/stamp-patched; fi
patches:
if [ "debian/stamp-patched" != "reverse-patches" ]; then touch debian/stamp-patched; fi
if [ "debian/stamp-patched" != "reverse-patches" ] ; then \
/usr/bin/make -f debian/rules update-config ; \
fi
-make[1]: Entering directory `/build/buildd-r-bioc-biobase_2.12.2-1-sparc-JfPk25/r-bioc-biobase-2.12.2'
+make[1]: Entering directory `/build/buildd-r-bioc-biobase_2.14.0-1-sparc-gn9SaH/r-bioc-biobase-2.14.0'
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
make[1]: Nothing to be done for `update-config'.
-make[1]: Leaving directory `/build/buildd-r-bioc-biobase_2.12.2-1-sparc-JfPk25/r-bioc-biobase-2.12.2'
+make[1]: Leaving directory `/build/buildd-r-bioc-biobase_2.14.0-1-sparc-gn9SaH/r-bioc-biobase-2.14.0'
fakeroot debian/rules binary-arch
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
test -x debian/rules
@@ -623,29 +661,30 @@ dh_testroot
dh_prep
dh_installdirs -A
mkdir -p "."
+/usr/share/cdbs/1/rules/buildcore.mk:109: WARNING: DEB_DH_BUILDDEB_ARGS is a deprecated variable
dh_installdirs usr/lib/R/site-library
if test -f /usr/bin/xvfb-run; then \
xvfb-run -a \
- R CMD INSTALL -l /build/buildd-r-bioc-biobase_2.12.2-1-sparc-JfPk25/r-bioc-biobase-2.12.2/debian/r-bioc-biobase/usr/lib/R/site-library --clean \
+ R CMD INSTALL -l /build/buildd-r-bioc-biobase_2.14.0-1-sparc-gn9SaH/r-bioc-biobase-2.14.0/debian/r-bioc-biobase/usr/lib/R/site-library --clean \
. ; \
else \
- R CMD INSTALL -l /build/buildd-r-bioc-biobase_2.12.2-1-sparc-JfPk25/r-bioc-biobase-2.12.2/debian/r-bioc-biobase/usr/lib/R/site-library \
+ R CMD INSTALL -l /build/buildd-r-bioc-biobase_2.14.0-1-sparc-gn9SaH/r-bioc-biobase-2.14.0/debian/r-bioc-biobase/usr/lib/R/site-library \
--clean . ;\
fi
* installing *source* package 'Biobase' ...
** libs
-make[1]: Entering directory `/build/buildd-r-bioc-biobase_2.12.2-1-sparc-JfPk25/r-bioc-biobase-2.12.2/src'
-gcc -I/usr/share/R/include -fPIC -std=gnu99 -O3 -pipe -g -c Rinit.c -o Rinit.o
-gcc -I/usr/share/R/include -fPIC -std=gnu99 -O3 -pipe -g -c anyMissing.c -o anyMissing.o
-gcc -I/usr/share/R/include -fPIC -std=gnu99 -O3 -pipe -g -c envir.c -o envir.o
-gcc -I/usr/share/R/include -fPIC -std=gnu99 -O3 -pipe -g -c matchpt.c -o matchpt.o
-gcc -I/usr/share/R/include -fPIC -std=gnu99 -O3 -pipe -g -c rowMedians.c -o rowMedians.o
-gcc -I/usr/share/R/include -fPIC -std=gnu99 -O3 -pipe -g -c sublist_extract.c -o sublist_extract.o
-gcc -shared -o Biobase.so Rinit.o anyMissing.o envir.o matchpt.o rowMedians.o sublist_extract.o -L/usr/lib/R/lib -lR
-make[1]: Leaving directory `/build/buildd-r-bioc-biobase_2.12.2-1-sparc-JfPk25/r-bioc-biobase-2.12.2/src'
-make[1]: Entering directory `/build/buildd-r-bioc-biobase_2.12.2-1-sparc-JfPk25/r-bioc-biobase-2.12.2/src'
-make[1]: Leaving directory `/build/buildd-r-bioc-biobase_2.12.2-1-sparc-JfPk25/r-bioc-biobase-2.12.2/src'
-installing to /build/buildd-r-bioc-biobase_2.12.2-1-sparc-JfPk25/r-bioc-biobase-2.12.2/debian/r-bioc-biobase/usr/lib/R/site-library/Biobase/libs
+make[1]: Entering directory `/build/buildd-r-bioc-biobase_2.14.0-1-sparc-gn9SaH/r-bioc-biobase-2.14.0/src'
+gcc -std=gnu99 -I/usr/share/R/include -fPIC -O3 -pipe -g -c Rinit.c -o Rinit.o
+gcc -std=gnu99 -I/usr/share/R/include -fPIC -O3 -pipe -g -c anyMissing.c -o anyMissing.o
+gcc -std=gnu99 -I/usr/share/R/include -fPIC -O3 -pipe -g -c envir.c -o envir.o
+gcc -std=gnu99 -I/usr/share/R/include -fPIC -O3 -pipe -g -c matchpt.c -o matchpt.o
+gcc -std=gnu99 -I/usr/share/R/include -fPIC -O3 -pipe -g -c rowMedians.c -o rowMedians.o
+gcc -std=gnu99 -I/usr/share/R/include -fPIC -O3 -pipe -g -c sublist_extract.c -o sublist_extract.o
+gcc -std=gnu99 -shared -o Biobase.so Rinit.o anyMissing.o envir.o matchpt.o rowMedians.o sublist_extract.o -L/usr/lib/R/lib -lR
+make[1]: Leaving directory `/build/buildd-r-bioc-biobase_2.14.0-1-sparc-gn9SaH/r-bioc-biobase-2.14.0/src'
+make[1]: Entering directory `/build/buildd-r-bioc-biobase_2.14.0-1-sparc-gn9SaH/r-bioc-biobase-2.14.0/src'
+make[1]: Leaving directory `/build/buildd-r-bioc-biobase_2.14.0-1-sparc-gn9SaH/r-bioc-biobase-2.14.0/src'
+installing to /build/buildd-r-bioc-biobase_2.14.0-1-sparc-gn9SaH/r-bioc-biobase-2.14.0/debian/r-bioc-biobase/usr/lib/R/site-library/Biobase/libs
** R
** data
** inst
@@ -653,20 +692,27 @@ installing to /build/buildd-r-bioc-biobase_2.12.2-1-sparc-JfPk25/r-bioc-biobase-
** help
*** installing help indices
** building package indices ...
+*** tangling vignette sources ...
+ 'BiobaseDevelopment.Rnw'
+ 'Bioconductor.Rnw'
+ 'ExpressionSetIntroduction.Rnw'
+ 'HowTo.Rnw'
+ 'Qviews.Rnw'
+ 'esApply.Rnw'
** testing if installed package can be loaded
* DONE (Biobase)
-rm -vf /build/buildd-r-bioc-biobase_2.12.2-1-sparc-JfPk25/r-bioc-biobase-2.12.2/debian/r-bioc-biobase/usr/lib/R/site-library/R.css \
- /build/buildd-r-bioc-biobase_2.12.2-1-sparc-JfPk25/r-bioc-biobase-2.12.2/debian/r-bioc-biobase/usr/lib/R/site-library/Biobase/COPYING \
- /build/buildd-r-bioc-biobase_2.12.2-1-sparc-JfPk25/r-bioc-biobase-2.12.2/debian/r-bioc-biobase/usr/lib/R/site-library/Biobase/LICENSE.txt
+rm -vf /build/buildd-r-bioc-biobase_2.14.0-1-sparc-gn9SaH/r-bioc-biobase-2.14.0/debian/r-bioc-biobase/usr/lib/R/site-library/R.css \
+ /build/buildd-r-bioc-biobase_2.14.0-1-sparc-gn9SaH/r-bioc-biobase-2.14.0/debian/r-bioc-biobase/usr/lib/R/site-library/Biobase/COPYING \
+ /build/buildd-r-bioc-biobase_2.14.0-1-sparc-gn9SaH/r-bioc-biobase-2.14.0/debian/r-bioc-biobase/usr/lib/R/site-library/Biobase/LICENSE.txt
if test -f debian/overrides; then \
- install -d /build/buildd-r-bioc-biobase_2.12.2-1-sparc-JfPk25/r-bioc-biobase-2.12.2/debian/r-bioc-biobase/usr/share/lintian/overrides ; \
+ install -d /build/buildd-r-bioc-biobase_2.14.0-1-sparc-gn9SaH/r-bioc-biobase-2.14.0/debian/r-bioc-biobase/usr/share/lintian/overrides ; \
install -m 0644 debian/overrides \
- /build/buildd-r-bioc-biobase_2.12.2-1-sparc-JfPk25/r-bioc-biobase-2.12.2/debian/r-bioc-biobase/usr/share/lintian/overrides/r-bioc-biobase; \
+ /build/buildd-r-bioc-biobase_2.14.0-1-sparc-gn9SaH/r-bioc-biobase-2.14.0/debian/r-bioc-biobase/usr/share/lintian/overrides/r-bioc-biobase; \
fi
Adding cdbs dependencies to debian/r-bioc-biobase.substvars
dh_installdirs -pr-bioc-biobase
-echo "R:Depends=r-base-core (>= 2.13.1~)" >> debian/r-bioc-biobase.substvars
+echo "R:Depends=r-base-core (>= 2.14.0~)" >> debian/r-bioc-biobase.substvars
dh_installdocs -pr-bioc-biobase ./NEWS
dh_installexamples -pr-bioc-biobase
dh_installman -pr-bioc-biobase
@@ -697,23 +743,23 @@ dh_perl -pr-bioc-biobase
dh_shlibdeps -pr-bioc-biobase
dh_gencontrol -pr-bioc-biobase
dh_md5sums -pr-bioc-biobase
-dh_builddeb -pr-bioc-biobase
-dpkg-deb: building package `r-bioc-biobase' in `../r-bioc-biobase_2.12.2-1_sparc.deb'.
- dpkg-genchanges -B -msparc Build Daemon (schroeder) <buildd_sparc-schroeder at buildd.debian.org> >../r-bioc-biobase_2.12.2-1_sparc.changes
+dh_builddeb -pr-bioc-biobase -- -Z xz
+dpkg-deb: building package `r-bioc-biobase' in `../r-bioc-biobase_2.14.0-1_sparc.deb'.
+ dpkg-genchanges -B -msparc Build Daemon (schroeder) <buildd_sparc-schroeder at buildd.debian.org> >../r-bioc-biobase_2.14.0-1_sparc.changes
dpkg-genchanges: arch-specific upload - not including arch-independent packages
dpkg-genchanges: binary-only upload - not including any source code
- dpkg-source --after-build r-bioc-biobase-2.12.2
+ dpkg-source --after-build r-bioc-biobase-2.14.0
dpkg-buildpackage: binary only upload (no source included)
────────────────────────────────────────────────────────────────────────────────
-Build finished at 20110804-0031
+Build finished at 20111102-0604
-r-bioc-biobase_2.12.2-1_sparc.changes:
+r-bioc-biobase_2.14.0-1_sparc.changes:
Format: 1.8
-Date: Thu, 04 Aug 2011 08:58:03 +0900
+Date: Wed, 02 Nov 2011 13:52:04 +0900
Source: r-bioc-biobase
Binary: r-bioc-biobase
Architecture: sparc
-Version: 2.12.2-1
+Version: 2.14.0-1
Distribution: sid
Urgency: low
Maintainer: sparc Build Daemon (schroeder) <buildd_sparc-schroeder at buildd.debian.org>
@@ -721,34 +767,38 @@ Changed-By: Charles Plessy <plessy at debian.org>
Description:
r-bioc-biobase - base functions for Bioconductor
Changes:
- r-bioc-biobase (2.12.2-1) unstable; urgency=low
+ r-bioc-biobase (2.14.0-1) unstable; urgency=low
.
- * New upstream release.
+ [cb6b786] Bioconductor release 2.9.
+ [d70e490] Build-Depend on R >= 2.10 according to DESCRIPTION.
+ [ae99e35] Include 7 digits of the commit id in the changelog entry.
+ [33b5d47] Compress binary package with xz.
Checksums-Sha1:
- f7ee597fd348876e3e3fd762202131014c033a29 2665704 r-bioc-biobase_2.12.2-1_sparc.deb
+ 751e0bbe07cb759896d2d3e73b14370f21963cbc 2318734 r-bioc-biobase_2.14.0-1_sparc.deb
Checksums-Sha256:
- ddef7c45752bf775f382944c324f4e302302f517c2df8619f2f7fa2cda657f6e 2665704 r-bioc-biobase_2.12.2-1_sparc.deb
+ dff50e3a66281c0f197453ac3789b58883e21cee72ff4e3f6929d3ea11df8a8b 2318734 r-bioc-biobase_2.14.0-1_sparc.deb
Files:
- 83e5ac6efdfe4874fd58932295f00f63 2665704 gnu-r optional r-bioc-biobase_2.12.2-1_sparc.deb
+ a57a47837629165e8aaa0ecb6529459f 2318734 gnu-r optional r-bioc-biobase_2.14.0-1_sparc.deb
┌──────────────────────────────────────────────────────────────────────────────┐
│ Package contents │
└──────────────────────────────────────────────────────────────────────────────┘
-r-bioc-biobase_2.12.2-1_sparc.deb
+r-bioc-biobase_2.14.0-1_sparc.deb
─────────────────────────────────
new debian package, version 2.0.
- size 2665704 bytes: control archive= 4943 bytes.
- 1187 bytes, 25 lines control
+ size 2318734 bytes: control archive= 4945 bytes.
+ 1217 bytes, 26 lines control
13314 bytes, 141 lines md5sums
Package: r-bioc-biobase
- Version: 2.12.2-1
+ Version: 2.14.0-1
Architecture: sparc
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
- Installed-Size: 3796
- Depends: libc6 (>= 2.6), r-base-core (>= 2.13.1~)
+ Installed-Size: 3066
+ Pre-Depends: dpkg (>= 1.15.6)
+ Depends: libc6 (>= 2.6), r-base-core (>= 2.14.0~)
Section: gnu-r
Priority: optional
Homepage: http://www.bioconductor.org
@@ -769,177 +819,177 @@ r-bioc-biobase_2.12.2-1_sparc.deb
unofficial auto-generated Bioconductor packages for Debian and Ubuntu systems,
that are prepared by members of the Debian Med team.
-drwxr-xr-x root/root 0 2011-08-04 00:31 ./
-drwxr-xr-x root/root 0 2011-08-04 00:31 ./usr/
-drwxr-xr-x root/root 0 2011-08-04 00:31 ./usr/share/
-drwxr-xr-x root/root 0 2011-08-04 00:31 ./usr/share/doc/
-drwxr-xr-x root/root 0 2011-08-04 00:31 ./usr/share/doc/r-bioc-biobase/
--rw-r--r-- root/root 10574 2011-08-04 00:30 ./usr/share/doc/r-bioc-biobase/copyright
--rw-r--r-- root/root 392 2011-08-04 00:30 ./usr/share/doc/r-bioc-biobase/README.Debian
--rw-r--r-- root/root 203 2011-08-04 00:30 ./usr/share/doc/r-bioc-biobase/changelog.Debian.gz
--rw-r--r-- root/root 1380 2011-07-01 16:14 ./usr/share/doc/r-bioc-biobase/NEWS.gz
-drwxr-xr-x root/root 0 2011-08-04 00:30 ./usr/lib/
-drwxr-xr-x root/root 0 2011-08-04 00:30 ./usr/lib/R/
-drwxr-xr-x root/root 0 2011-08-04 00:31 ./usr/lib/R/site-library/
-drwxr-xr-x root/root 0 2011-08-04 00:31 ./usr/lib/R/site-library/Biobase/
--rw-r--r-- root/root 6600 2011-08-04 00:31 ./usr/lib/R/site-library/Biobase/INDEX
-drwxr-xr-x root/root 0 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/ExpressionSet/
-drwxr-xr-x root/root 0 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/ExpressionSet/man/
--rw-r--r-- root/root 180 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/ExpressionSet/man/@PKGNAME at .Rd
--rw-r--r-- root/root 212 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/ExpressionSet/DESCRIPTION
-drwxr-xr-x root/root 0 2011-08-04 00:31 ./usr/lib/R/site-library/Biobase/html/
--rw-r--r-- root/root 1179 2011-08-04 00:31 ./usr/lib/R/site-library/Biobase/html/R.css
--rw-r--r-- root/root 51239 2011-08-04 00:31 ./usr/lib/R/site-library/Biobase/html/00Index.html
-drwxr-xr-x root/root 0 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/extdata/
--rw-r--r-- root/root 715 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/extdata/pData.txt
--rw-r--r-- root/root 109039 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/extdata/exprsData.txt
--rw-r--r-- root/root 2870 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/NAMESPACE
-drwxr-xr-x root/root 0 2011-08-04 00:31 ./usr/lib/R/site-library/Biobase/help/
--rw-r--r-- root/root 14396 2011-08-04 00:31 ./usr/lib/R/site-library/Biobase/help/AnIndex
--rw-r--r-- root/root 242245 2011-08-04 00:31 ./usr/lib/R/site-library/Biobase/help/Biobase.rdb
--rw-r--r-- root/root 856 2011-08-04 00:31 ./usr/lib/R/site-library/Biobase/help/paths.rds
--rw-r--r-- root/root 3321 2011-08-04 00:31 ./usr/lib/R/site-library/Biobase/help/aliases.rds
--rw-r--r-- root/root 1992 2011-08-04 00:31 ./usr/lib/R/site-library/Biobase/help/Biobase.rdx
--rw-r--r-- root/root 516 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/testClass.R
-drwxr-xr-x root/root 0 2011-08-04 00:31 ./usr/lib/R/site-library/Biobase/doc/
--rw-r--r-- root/root 28377 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/doc/BiobaseDevelopment.Rnw
--rw-r--r-- root/root 3727 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/doc/esApply.Rnw
--rw-r--r-- root/root 3048 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/doc/HowTo.Rnw
--rw-r--r-- root/root 267601 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/doc/BiobaseDevelopment.pdf
--rw-r--r-- root/root 79071 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/doc/Qviews.pdf
--rw-r--r-- root/root 8004 2011-08-04 00:31 ./usr/lib/R/site-library/Biobase/doc/BiobaseDevelopment.R
--rw-r--r-- root/root 197875 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/doc/ExpressionSetIntroduction.pdf
--rw-r--r-- root/root 3987 2011-08-04 00:31 ./usr/lib/R/site-library/Biobase/doc/Qviews.R
--rw-r--r-- root/root 76653 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/doc/Bioconductor.pdf
--rw-r--r-- root/root 3067 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/doc/Bioconductor.Rnw
--rw-r--r-- root/root 220 2011-08-04 00:31 ./usr/lib/R/site-library/Biobase/doc/Bioconductor.R
--rw-r--r-- root/root 60322 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/doc/HowTo.pdf
--rw-r--r-- root/root 206 2011-08-04 00:31 ./usr/lib/R/site-library/Biobase/doc/HowTo.R
--rw-r--r-- root/root 1426 2011-08-04 00:31 ./usr/lib/R/site-library/Biobase/doc/index.html
--rw-r--r-- root/root 1591 2011-08-04 00:31 ./usr/lib/R/site-library/Biobase/doc/esApply.R
--rw-r--r-- root/root 18067 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/doc/ExpressionSetIntroduction.Rnw
--rw-r--r-- root/root 6656 2011-08-04 00:31 ./usr/lib/R/site-library/Biobase/doc/ExpressionSetIntroduction.R
--rw-r--r-- root/root 5030 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/doc/Qviews.Rnw
--rw-r--r-- root/root 110288 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/doc/esApply.pdf
-drwxr-xr-x root/root 0 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/doc/legacy/
--rw-r--r-- root/root 13630 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/doc/legacy/Biobase.Rnw
--rw-r--r-- root/root 3988 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/NEWS
-drwxr-xr-x root/root 0 2011-08-04 00:31 ./usr/lib/R/site-library/Biobase/Meta/
--rw-r--r-- root/root 5637 2011-08-04 00:31 ./usr/lib/R/site-library/Biobase/Meta/Rd.rds
--rw-r--r-- root/root 5633 2011-08-04 00:31 ./usr/lib/R/site-library/Biobase/Meta/hsearch.rds
--rw-r--r-- root/root 475 2011-08-04 00:31 ./usr/lib/R/site-library/Biobase/Meta/vignette.rds
--rw-r--r-- root/root 1359 2011-08-04 00:31 ./usr/lib/R/site-library/Biobase/Meta/nsInfo.rds
--rw-r--r-- root/root 3431 2011-08-04 00:31 ./usr/lib/R/site-library/Biobase/Meta/links.rds
--rw-r--r-- root/root 324 2011-08-04 00:31 ./usr/lib/R/site-library/Biobase/Meta/data.rds
--rw-r--r-- root/root 1025 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/Meta/package.rds
-drwxr-xr-x root/root 0 2011-08-04 00:31 ./usr/lib/R/site-library/Biobase/R/
--rw-r--r-- root/root 363975 2011-08-04 00:31 ./usr/lib/R/site-library/Biobase/R/Biobase.rdb
--rw-r--r-- root/root 384 2011-08-04 00:31 ./usr/lib/R/site-library/Biobase/R/Biobase
--rw-r--r-- root/root 8691 2011-08-04 00:31 ./usr/lib/R/site-library/Biobase/R/Biobase.rdx
-drwxr-xr-x root/root 0 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/UnitTests/
--rw-r--r-- root/root 20153 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/UnitTests/EsetSubclasses_test.R
--rw-r--r-- root/root 2096 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/UnitTests/esApply_test.R
--rw-r--r-- root/root 180 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/UnitTests/checkClass_test.R
--rwxr-xr-x root/root 39 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/UnitTests/runall.sh
--rwxr-xr-x root/root 213 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/UnitTests/runfile.sh
--rw-r--r-- root/root 2522 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/UnitTests/combine_test.R
--rw-r--r-- root/root 4598 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/UnitTests/data.frame_test.R
--rw-r--r-- root/root 2035 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/UnitTests/AssayData_test.R
--rw-r--r-- root/root 286 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/UnitTests/Makefile
--rw-r--r-- root/root 1257 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/UnitTests/utilities.R
--rw-r--r-- root/root 629 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/UnitTests/DataClasses_test.R
-drwxr-xr-x root/root 0 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/
-drwxr-xr-x root/root 0 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/1.8/
--rw-r--r-- root/root 939 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/1.8/AnnotatedDataFrame.Rda
--rw-r--r-- root/root 741 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/1.8/MIAME.Rda
--rw-r--r-- root/root 4588 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/1.8/exprSet.Rda
--rw-r--r-- root/root 4678 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/1.8/ExpressionSet.Rda
--rw-r--r-- root/root 943 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/1.8/phenoData.Rda
-drwxr-xr-x root/root 0 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/2.0/
--rw-r--r-- root/root 555 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/2.0/MultiSet.Rda
--rw-r--r-- root/root 1014 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/2.0/AnnotatedDataFrame.Rda
--rw-r--r-- root/root 227 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/2.0/aggregator.Rda
--rw-r--r-- root/root 113 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/2.0/ScalarCharacter.Rda
--rw-r--r-- root/root 110 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/2.0/VersionsNull.Rda
--rw-r--r-- root/root 795 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/2.0/MIAME.Rda
--rw-r--r-- root/root 609 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/2.0/SnpSet.Rda
--rw-r--r-- root/root 4705 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/2.0/exprSet.Rda
--rw-r--r-- root/root 143 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/2.0/Versioned.Rda
--rw-r--r-- root/root 105 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/2.0/Versions.Rda
--rw-r--r-- root/root 4822 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/2.0/ExpressionSet.Rda
--rw-r--r-- root/root 998 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/2.0/phenoData.Rda
--rw-r--r-- root/root 146 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/2.0/container.Rda
--rw-r--r-- root/root 183 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/2.0/VersionedBiobase.Rda
-drwxr-xr-x root/root 0 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/
--rw-r--r-- root/root 1166 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/MultiSet.Rda
--rw-r--r-- root/root 1016 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/AnnotatedDataFrame.Rda
--rw-r--r-- root/root 231 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/aggregator.Rda
--rw-r--r-- root/root 92336 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/sample.exprSet.rda
--rw-r--r-- root/root 113 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/ScalarCharacter.Rda
--rw-r--r-- root/root 62219 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/sample.exprSet.1.rda
--rw-r--r-- root/root 802 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/NChannelSet.Rda
--rw-r--r-- root/root 167662 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/golubMergeSub.rda
--rw-r--r-- root/root 112 2011-08-04 00:30 ./usr/lib/R/site-library/Biobase/UnitTests/VersionedClass_data/devel/VersionsNull.Rda
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+-rw-r--r-- root/root 1263 2011-11-02 06:04 ./usr/lib/R/site-library/Biobase/DESCRIPTION
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+-rw-r--r-- root/root 350 2011-11-02 06:04 ./usr/lib/R/site-library/Biobase/Code/man/get at PKGNAME@.Rd
+-rw-r--r-- root/root 487 2011-11-02 06:04 ./usr/lib/R/site-library/Biobase/Code/man/@PKGNAME at .Rd
+drwxr-xr-x root/root 0 2011-11-02 06:04 ./usr/lib/R/site-library/Biobase/Code/R/
+-rw-r--r-- root/root 91 2011-11-02 06:04 ./usr/lib/R/site-library/Biobase/Code/R/get at PKGNAME@.R
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┌──────────────────────────────────────────────────────────────────────────────┐
@@ -953,7 +1003,7 @@ Built successfully
│ Post Build │
└──────────────────────────────────────────────────────────────────────────────┘
-Purging /var/lib/schroot/mount/sid-sparc-sbuild-d3ec6565-9daf-4ae5-924c-c1eff751f430/build/buildd-r-bioc-biobase_2.12.2-1-sparc-JfPk25
+Purging /var/lib/schroot/mount/sid-sparc-sbuild-7babd97f-40b2-4203-9640-37d393310b17/build/buildd-r-bioc-biobase_2.14.0-1-sparc-gn9SaH
Not cleaning session: cloned chroot in use
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -961,18 +1011,18 @@ Not cleaning session: cloned chroot in use
└──────────────────────────────────────────────────────────────────────────────┘
Architecture: sparc
-Build-Space: 10088
-Build-Time: 72
+Build-Space: 9144
+Build-Time: 67
Distribution: sid
-Install-Time: 171
-Job: r-bioc-biobase_2.12.2-1
+Install-Time: 186
+Job: r-bioc-biobase_2.14.0-1
Package: r-bioc-biobase
-Package-Time: 292
-Source-Version: 2.12.2-1
-Space: 10088
+Package-Time: 305
+Source-Version: 2.14.0-1
+Space: 9144
Status: successful
-Version: 2.12.2-1
+Version: 2.14.0-1
────────────────────────────────────────────────────────────────────────────────
-Finished at 20110804-0031
-Build needed 00:04:52, 10088k disc space
+Finished at 20111102-0604
+Build needed 00:05:05, 9144k disc space
Signature with key '7C392B18' requested:
--
base functions for Bioconductor
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