[med-svn] [SCM] r-bioc-limma branch, meta, updated. meta/3.8.2-1-3-gab1efd4
Charles Plessy
plessy at debian.org
Fri Nov 4 05:28:41 UTC 2011
The following commit has been merged in the meta branch:
commit f851399d1df703f923963d4500b314e0709443c9
Author: Charles Plessy <plessy at debian.org>
Date: Fri Nov 4 13:24:51 2011 +0900
Collected build logs for 3.8.3-1.
diff --git a/armel.log b/armel.log
index bb65a52..b860bc2 100644
--- a/armel.log
+++ b/armel.log
@@ -1,68 +1,67 @@
-From buildd at antheil.debian.org Thu Jun 02 15:54:53 2011
-Return-path: <buildd at antheil.debian.org>
+From buildd at alwyn.debian.org Sun Aug 14 12:22:52 2011
+Return-path: <buildd at alwyn.debian.org>
Received: from kokkonen.debian.org ([2001:41b8:202:deb:1a1a:0:52c3:4b61])
from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
CN=kokkonen.debian.org,
EMAIL=hostmaster at kokkonen.debian.org (verified)
by grieg.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
- (Exim 4.72) (envelope-from <buildd at antheil.debian.org>)
- id 1QSAEX-0001M9-1w
- for logs at buildd.debian.org; Thu, 02 Jun 2011 15:54:53 +0000
-Received: from antheil.islands.arm.com ([217.140.96.60]
- helo=antheil.debian.org)
+ (Exim 4.72) (envelope-from <buildd at alwyn.debian.org>)
+ id 1QsZiN-0007OC-LB
+ for logs at buildd.debian.org; Sun, 14 Aug 2011 12:22:52 +0000
+Received: from alwyn.islands.arm.com ([217.140.96.59] helo=alwyn.debian.org)
from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
- CN=antheil.debian.org, EMAIL=hostmaster at antheil.debian.org (verified)
+ CN=alwyn.debian.org, EMAIL=hostmaster at alwyn.debian.org (verified)
by kokkonen.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
- (Exim 4.72) (envelope-from <buildd at antheil.debian.org>)
- id 1QSAEV-0000QW-W0
- for logs at buildd.debian.org; Thu, 02 Jun 2011 15:54:52 +0000
-Received: from buildd by antheil.debian.org with local (Exim 4.69)
- (envelope-from <buildd at antheil.debian.org>)
- id 1QSAEU-0006pb-I0; Thu, 02 Jun 2011 15:54:50 +0000
-From: buildd on antheil <buildd at antheil.debian.org>
-To: buildd-porters at antheil.debian.org,logs at buildd.debian.org
-Subject: Log for successful build of r-bioc-limma_3.8.2-1 on armel (dist=sid)
+ (Exim 4.72) (envelope-from <buildd at alwyn.debian.org>)
+ id 1QsZiL-0004IA-3I
+ for logs at buildd.debian.org; Sun, 14 Aug 2011 12:22:49 +0000
+Received: from buildd by alwyn.debian.org with local (Exim 4.72)
+ (envelope-from <buildd at alwyn.debian.org>)
+ id 1QsZiK-0002CZ-5d; Sun, 14 Aug 2011 12:22:48 +0000
+Date: Sun, 14 Aug 2011 12:22:48 +0000
+Message-Id: <E1QsZiK-0002CZ-5d at alwyn.debian.org>
+From: buildd on alwyn <buildd at alwyn.debian.org>
+To: buildd-porters at alwyn.debian.org,logs at buildd.debian.org
+Subject: Log for successful build of r-bioc-limma_3.8.3-1 on armel (dist=sid)
Content-Type: text/plain; charset=UTF-8
Content-Transfer-Encoding: 8bit
-Message-Id: <E1QSAEU-0006pb-I0 at antheil.debian.org>
-Date: Thu, 02 Jun 2011 15:54:50 +0000
Delivered-To: logs at buildd.debian.org
-sbuild (Debian sbuild) 0.61.0 (23 Feb 2011) on antheil.debian.org
+sbuild (Debian sbuild) 0.61.0 (23 Feb 2011) on alwyn.debian.org
╔══════════════════════════════════════════════════════════════════════════════╗
-║ r-bioc-limma 3.8.2-1 (armel) 02 Jun 2011 15:46 ║
+║ r-bioc-limma 3.8.3-1 (armel) 14 Aug 2011 12:14 ║
╚══════════════════════════════════════════════════════════════════════════════╝
Package: r-bioc-limma
-Version: 3.8.2-1
-Source Version: 3.8.2-1
+Version: 3.8.3-1
+Source Version: 3.8.3-1
Architecture: armel
Get:1 http://ftp.uk.debian.org unstable InRelease [146 kB]
Get:2 http://incoming.debian.org unstable InRelease [146 kB]
-Get:3 http://ftp.uk.debian.org unstable/main Sources [5270 kB]
+Get:3 http://ftp.uk.debian.org unstable/main Sources [5431 kB]
Ign http://incoming.debian.org InRelease
Get:4 http://incoming.debian.org Release.gpg [836 B]
Get:5 http://incoming.debian.org Release [1604 B]
-Get:6 http://incoming.debian.org unstable/main Sources [5270 kB]
-Get:7 http://ftp.uk.debian.org unstable/contrib Sources [49.7 kB]
-Get:8 http://ftp.uk.debian.org unstable/non-free Sources [92.2 kB]
-Get:9 http://ftp.uk.debian.org unstable/main armel Packages [7192 kB]
-Get:10 http://ftp.uk.debian.org unstable/contrib armel Packages [53.8 kB]
-Ign http://ftp.uk.debian.org unstable/contrib TranslationIndex
-Get:11 http://ftp.uk.debian.org unstable/main TranslationIndex [2264 B]
-Ign http://ftp.uk.debian.org unstable/contrib Translation-en
-Get:12 http://incoming.debian.org unstable/contrib Sources [49.7 kB]
-Get:13 http://incoming.debian.org unstable/non-free Sources [92.2 kB]
-Get:14 http://incoming.debian.org unstable/main armel Packages [7192 kB]
-Get:15 http://incoming.debian.org unstable/contrib armel Packages [53.8 kB]
+Get:6 http://incoming.debian.org unstable/main Sources [5431 kB]
+Get:7 http://incoming.debian.org unstable/contrib Sources [52.5 kB]
+Get:8 http://incoming.debian.org unstable/non-free Sources [95.7 kB]
+Get:9 http://incoming.debian.org unstable/main armel Packages [7420 kB]
+Get:10 http://ftp.uk.debian.org unstable/contrib Sources [52.5 kB]
+Get:11 http://ftp.uk.debian.org unstable/non-free Sources [95.7 kB]
+Get:12 http://ftp.uk.debian.org unstable/main armel Packages [7420 kB]
+Get:13 http://incoming.debian.org unstable/contrib armel Packages [54.4 kB]
Ign http://incoming.debian.org unstable/contrib TranslationIndex
-Get:16 http://incoming.debian.org unstable/main TranslationIndex [2264 B]
-Get:17 http://incoming.debian.org Sources [36.8 kB]
-Get:18 http://incoming.debian.org Packages [370 kB]
+Get:14 http://incoming.debian.org unstable/main TranslationIndex [2185 B]
+Get:15 http://incoming.debian.org Sources [25.0 kB]
+Get:16 http://incoming.debian.org Packages [110 kB]
Ign http://incoming.debian.org Translation-en
Ign http://incoming.debian.org unstable/contrib Translation-en
-Fetched 26.0 MB in 57s (451 kB/s)
+Get:17 http://ftp.uk.debian.org unstable/contrib armel Packages [54.4 kB]
+Ign http://ftp.uk.debian.org unstable/contrib TranslationIndex
+Get:18 http://ftp.uk.debian.org unstable/main TranslationIndex [2185 B]
+Ign http://ftp.uk.debian.org unstable/contrib Translation-en
+Fetched 26.5 MB in 1min 6s (402 kB/s)
Reading package lists...
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -82,12 +81,12 @@ Reading package lists...
Building dependency tree...
Reading state information...
NOTICE: 'r-bioc-limma' packaging is maintained in the 'Git' version control system at:
-git://anonscm.debian.org/debian-med/r-bioc-limma.git
+git://git.debian.org/git/debian-med/r-bioc-limma.git
Need to get 921 kB of source archives.
-Get:1 http://incoming.debian.org/buildd-unstable/ r-bioc-limma 3.8.2-1 (dsc) [1931 B]
-Get:2 http://incoming.debian.org/buildd-unstable/ r-bioc-limma 3.8.2-1 (tar) [917 kB]
-Get:3 http://incoming.debian.org/buildd-unstable/ r-bioc-limma 3.8.2-1 (diff) [2158 B]
-Fetched 921 kB in 1s (781 kB/s)
+Get:1 http://incoming.debian.org/buildd-unstable/ r-bioc-limma 3.8.3-1 (dsc) [1931 B]
+Get:2 http://incoming.debian.org/buildd-unstable/ r-bioc-limma 3.8.3-1 (tar) [917 kB]
+Get:3 http://incoming.debian.org/buildd-unstable/ r-bioc-limma 3.8.3-1 (diff) [2212 B]
+Fetched 921 kB in 1s (632 kB/s)
Download complete and in download only mode
Check arch
@@ -101,18 +100,18 @@ Check arch
Build-Depends: build-essential, fakeroot
Checking for already installed dependencies...
build-essential: already installed (11.5)
-fakeroot: already installed (1.15.1-1)
+fakeroot: already installed (1.16-1)
Checking for dependency conflicts...
Installing positive dependencies:
Reading package lists...
Building dependency tree...
Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 40 not upgraded.
+0 upgraded, 0 newly installed, 0 to remove and 4 not upgraded.
Removing negative dependencies:
Reading package lists...
Building dependency tree...
Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 40 not upgraded.
+0 upgraded, 0 newly installed, 0 to remove and 4 not upgraded.
Checking correctness of dependencies...
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -121,67 +120,64 @@ Checking correctness of dependencies...
Build-Depends: base-files, base-passwd, bash, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, ncurses-base, ncurses-bin, perl-base, sed, login, sysvinit-utils, sysvinit, tar, bsdutils, mount, util-linux, libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 8), cdbs, r-base-dev (>= 2.10.0)
Checking for already installed dependencies...
-base-files: already installed (6.3)
-base-passwd: already installed (3.5.22)
+base-files: already installed (6.5)
+base-passwd: already installed (3.5.23)
bash: already installed (4.1-3)
coreutils: already installed (8.5-1)
dash: already installed (0.5.5.1-7.4)
-debianutils: already installed (3.4.4)
+debianutils: already installed (4.0.2)
diffutils: already installed (1:3.0-1)
-dpkg: already installed (1.16.0.2)
-e2fsprogs: already installed (1.41.12-2)
+dpkg: already installed (1.16.0.3)
+e2fsprogs: already installed (1.42~WIP-2011-07-02-1)
findutils: already installed (4.4.2-1+b1)
-grep: already installed (2.6.3-3)
-gzip: already installed (1.3.12-9)
+grep: already installed (2.9-1)
+gzip: already installed (1.4-1)
hostname: already installed (3.06)
ncurses-base: already installed (5.9-1)
ncurses-bin: already installed (5.9-1)
-perl-base: already installed (5.12.3-6)
+perl-base: already installed (5.12.4-2)
sed: already installed (4.2.1-9)
login: already installed (1:4.1.4.2+svn3283-3)
-sysvinit-utils: already installed (2.88dsf-13.2)
-sysvinit: already installed (2.88dsf-13.2)
+sysvinit-utils: already installed (2.88dsf-13.11)
+sysvinit: already installed (2.88dsf-13.11)
tar: already installed (1.25-3)
-bsdutils: already installed (1:2.17.2-9.1)
-mount: already installed (2.17.2-9.1)
-util-linux: already installed (2.17.2-9.1)
-libc6-dev: already installed (2.13-2)
-gcc: already installed (4:4.6.0-5 >= 4:4.4.3 is satisfied)
-g++: already installed (4:4.6.0-5 >= 4:4.4.3 is satisfied)
+bsdutils: already installed (1:2.19.1-5)
+mount: already installed (2.19.1-5)
+util-linux: already installed (2.19.1-5)
+libc6-dev: already installed (2.13-16)
+gcc: already installed (4:4.6.1-2 >= 4:4.4.3 is satisfied)
+g++: already installed (4:4.6.1-2 >= 4:4.4.3 is satisfied)
make: already installed (3.81-8.1)
-dpkg-dev: already installed (1.16.0.2 >= 1.13.5 is satisfied)
+dpkg-dev: already installed (1.16.0.3 >= 1.13.5 is satisfied)
debhelper: missing
-Using default version 8.1.6
+Using default version 8.9.4
cdbs: missing
r-base-dev: missing
-Using default version 2.13.0-2
+Using default version 2.13.1-1
Checking for dependency conflicts...
Installing positive dependencies: debhelper cdbs r-base-dev
Reading package lists...
Building dependency tree...
Reading state information...
The following extra packages will be installed:
- bsdmainutils cpp-4.6 dpatch file fontconfig fontconfig-config g++-4.6
- gcc-4.6 gcc-4.6-base gettext gettext-base gfortran gfortran-4.6 groff-base
- html2text intltool-debian libblas-dev libblas3gf libbz2-dev libcairo2
- libcroco3 libdatrie1 libexpat1 libfontconfig1 libfreetype6 libgcc1
- libgfortran3 libglib2.0-0 libgomp1 libice6 libjpeg62 libjpeg62-dev
- liblapack-dev liblapack3gf libmagic1 libncurses5-dev libpango1.0-0
- libpaper-utils libpaper1 libpcre3 libpcre3-dev libpcrecpp0 libpipeline1
- libpixman-1-0 libpng12-0 libpng12-dev libreadline-dev libreadline6
- libreadline6-dev libsm6 libstdc++6 libstdc++6-4.6-dev libthai-data libthai0
- libtiff4 libunistring0 libx11-6 libx11-data libxau6 libxcb-render0
- libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxrender1 libxss1
- libxt6 man-db po-debconf r-base-core tcl8.5 tk8.5 ttf-dejavu-core ucf unzip
- x11-common xdg-utils zip zlib1g-dev
+ bsdmainutils dpatch file fontconfig fontconfig-config gettext gettext-base
+ gfortran gfortran-4.6 groff-base html2text intltool-debian libblas-dev
+ libblas3gf libbz2-dev libcairo2 libcroco3 libdatrie1 libexpat1
+ libfontconfig1 libfreetype6 libgfortran3 libglib2.0-0 libice6 libjpeg62
+ libjpeg8 libjpeg8-dev liblapack-dev liblapack3gf libmagic1 libncurses5-dev
+ libpango1.0-0 libpaper-utils libpaper1 libpcre3 libpcre3-dev libpcrecpp0
+ libpipeline1 libpixman-1-0 libpng12-0 libpng12-dev libreadline-dev
+ libreadline6-dev libsm6 libthai-data libthai0 libtiff4 libunistring0
+ libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6
+ libxext6 libxft2 libxml2 libxrender1 libxss1 libxt6 man-db po-debconf
+ r-base-core tcl8.5 tk8.5 ttf-dejavu-core ucf unzip x11-common xdg-utils zip
+ zlib1g-dev
Suggested packages:
- wamerican wordlist whois vacation devscripts gcc-4.6-locales dh-make curl
- defoma gcc-4.6-doc libstdc++6-4.6-dbg libmudflap0-4.6-dev libgcc1-dbg
- libgomp1-dbg libquadmath-dbg libmudflap0-dbg binutils-gold gettext-doc
+ wamerican wordlist whois vacation devscripts dh-make curl defoma gettext-doc
gfortran-doc gfortran-4.6-doc libgfortran3-dbg groff ncurses-doc ttf-baekmuk
ttf-arphic-gbsn00lp ttf-arphic-bsmi00lp ttf-arphic-gkai00mp
- ttf-arphic-bkai00mp libstdc++6-4.6-doc less www-browser libmail-box-perl
- r-doc-info r-doc-pdf r-mathlib r-base-html tclreadline gvfs-bin
+ ttf-arphic-bkai00mp less www-browser libmail-box-perl r-doc-info r-doc-pdf
+ r-mathlib r-base-html tclreadline gvfs-bin
Recommended packages:
autotools-dev patchutils autopoint libglib2.0-data shared-mime-info
x-ttcidfont-conf xml-core libmail-sendmail-perl r-recommended r-doc-html
@@ -191,7 +187,7 @@ The following NEW packages will be installed:
gettext-base gfortran gfortran-4.6 groff-base html2text intltool-debian
libblas-dev libblas3gf libbz2-dev libcairo2 libcroco3 libdatrie1 libexpat1
libfontconfig1 libfreetype6 libgfortran3 libglib2.0-0 libice6 libjpeg62
- libjpeg62-dev liblapack-dev liblapack3gf libmagic1 libncurses5-dev
+ libjpeg8 libjpeg8-dev liblapack-dev liblapack3gf libmagic1 libncurses5-dev
libpango1.0-0 libpaper-utils libpaper1 libpcre3 libpcre3-dev libpcrecpp0
libpipeline1 libpixman-1-0 libpng12-0 libpng12-dev libreadline-dev
libreadline6-dev libsm6 libthai-data libthai0 libtiff4 libunistring0
@@ -199,385 +195,346 @@ The following NEW packages will be installed:
libxext6 libxft2 libxml2 libxrender1 libxss1 libxt6 man-db po-debconf
r-base-core r-base-dev tcl8.5 tk8.5 ttf-dejavu-core ucf unzip x11-common
xdg-utils zip zlib1g-dev
-The following packages will be upgraded:
- cpp-4.6 g++-4.6 gcc-4.6 gcc-4.6-base libgcc1 libgomp1 libreadline6
- libstdc++6 libstdc++6-4.6-dev
-9 upgraded, 75 newly installed, 0 to remove and 31 not upgraded.
-Need to get 62.8 MB of archives.
+0 upgraded, 76 newly installed, 0 to remove and 4 not upgraded.
+Need to get 46.8 MB of archives.
After this operation, 121 MB of additional disk space will be used.
-Get:1 http://ftp.uk.debian.org/debian/ unstable/main libreadline6 armel 6.2-2 [145 kB]
-Get:2 http://ftp.uk.debian.org/debian/ unstable/main libgomp1 armel 4.6.0-10 [28.3 kB]
-Get:3 http://ftp.uk.debian.org/debian/ unstable/main gcc-4.6-base armel 4.6.0-10 [130 kB]
-Get:4 http://ftp.uk.debian.org/debian/ unstable/main libstdc++6 armel 4.6.0-10 [296 kB]
-Get:5 http://ftp.uk.debian.org/debian/ unstable/main cpp-4.6 armel 4.6.0-10 [4303 kB]
-Get:6 http://ftp.uk.debian.org/debian/ unstable/main libstdc++6-4.6-dev armel 4.6.0-10 [1707 kB]
-Get:7 http://ftp.uk.debian.org/debian/ unstable/main g++-4.6 armel 4.6.0-10 [5204 kB]
-Get:8 http://ftp.uk.debian.org/debian/ unstable/main gcc-4.6 armel 4.6.0-10 [4556 kB]
-Get:9 http://ftp.uk.debian.org/debian/ unstable/main libgcc1 armel 1:4.6.0-10 [24.6 kB]
-Get:10 http://ftp.uk.debian.org/debian/ unstable/main bsdmainutils armel 8.2.2 [205 kB]
-Get:11 http://ftp.uk.debian.org/debian/ unstable/main groff-base armel 1.21-5 [1077 kB]
-Get:12 http://ftp.uk.debian.org/debian/ unstable/main libpipeline1 armel 1.2.0-2 [33.7 kB]
-Get:13 http://ftp.uk.debian.org/debian/ unstable/main man-db armel 2.6.0.2-1 [989 kB]
-Get:14 http://ftp.uk.debian.org/debian/ unstable/main libmagic1 armel 5.04-5+b1 [235 kB]
-Get:15 http://ftp.uk.debian.org/debian/ unstable/main file armel 5.04-5+b1 [49.4 kB]
-Get:16 http://ftp.uk.debian.org/debian/ unstable/main gettext-base armel 0.18.1.1-3 [129 kB]
-Get:17 http://ftp.uk.debian.org/debian/ unstable/main libpcre3 armel 8.12-3 [258 kB]
-Get:18 http://ftp.uk.debian.org/debian/ unstable/main libxml2 armel 2.7.8.dfsg-2+b1 [821 kB]
-Get:19 http://ftp.uk.debian.org/debian/ unstable/main ucf all 3.0025+nmu2 [70.6 kB]
-Get:20 http://ftp.uk.debian.org/debian/ unstable/main html2text armel 1.3.2a-15 [97.0 kB]
-Get:21 http://ftp.uk.debian.org/debian/ unstable/main libglib2.0-0 armel 2.28.6-1 [1535 kB]
-Get:22 http://ftp.uk.debian.org/debian/ unstable/main libcroco3 armel 0.6.2-1 [113 kB]
-Get:23 http://ftp.uk.debian.org/debian/ unstable/main libunistring0 armel 0.9.3-4 [409 kB]
-Get:24 http://ftp.uk.debian.org/debian/ unstable/main gettext armel 0.18.1.1-3 [1981 kB]
-Get:25 http://ftp.uk.debian.org/debian/ unstable/main intltool-debian all 0.35.0+20060710.1 [30.8 kB]
-Get:26 http://ftp.uk.debian.org/debian/ unstable/main po-debconf all 1.0.16+nmu1 [223 kB]
-Get:27 http://ftp.uk.debian.org/debian/ unstable/main debhelper all 8.1.6 [557 kB]
-Get:28 http://ftp.uk.debian.org/debian/ unstable/main cdbs all 0.4.94 [75.5 kB]
-Get:29 http://ftp.uk.debian.org/debian/ unstable/main dpatch all 2.0.31 [92.3 kB]
-Get:30 http://ftp.uk.debian.org/debian/ unstable/main libexpat1 armel 2.0.1-7 [118 kB]
-Get:31 http://ftp.uk.debian.org/debian/ unstable/main libfreetype6 armel 2.4.4-1 [375 kB]
-Get:32 http://ftp.uk.debian.org/debian/ unstable/main ttf-dejavu-core all 2.33-1 [1550 kB]
-Get:33 http://ftp.uk.debian.org/debian/ unstable/main fontconfig-config all 2.8.0-2.2 [218 kB]
-Get:34 http://ftp.uk.debian.org/debian/ unstable/main libfontconfig1 armel 2.8.0-2.2 [273 kB]
-Get:35 http://ftp.uk.debian.org/debian/ unstable/main fontconfig armel 2.8.0-2.2 [334 kB]
-Get:36 http://ftp.uk.debian.org/debian/ unstable/main libgfortran3 armel 4.6.0-10 [255 kB]
-Get:37 http://ftp.uk.debian.org/debian/ unstable/main gfortran-4.6 armel 4.6.0-10 [4924 kB]
-Get:38 http://ftp.uk.debian.org/debian/ unstable/main gfortran armel 4:4.6.0-5 [1126 B]
-Get:39 http://ftp.uk.debian.org/debian/ unstable/main libblas3gf armel 1.2-8 [268 kB]
-Get:40 http://ftp.uk.debian.org/debian/ unstable/main libblas-dev armel 1.2-8 [290 kB]
-Get:41 http://ftp.uk.debian.org/debian/ unstable/main libbz2-dev armel 1.0.5-6 [34.6 kB]
-Get:42 http://ftp.uk.debian.org/debian/ unstable/main libpixman-1-0 armel 0.21.8-1 [383 kB]
-Get:43 http://ftp.uk.debian.org/debian/ unstable/main libpng12-0 armel 1.2.44-2 [173 kB]
-Get:44 http://ftp.uk.debian.org/debian/ unstable/main libxau6 armel 1:1.0.6-1 [15.9 kB]
-Get:45 http://ftp.uk.debian.org/debian/ unstable/main libxdmcp6 armel 1:1.1.0-1 [21.5 kB]
-Get:46 http://ftp.uk.debian.org/debian/ unstable/main libxcb1 armel 1.7-2 [40.1 kB]
-Get:47 http://ftp.uk.debian.org/debian/ unstable/main libx11-data all 2:1.4.3-1 [186 kB]
-Get:48 http://ftp.uk.debian.org/debian/ unstable/main libx11-6 armel 2:1.4.3-1 [834 kB]
-Get:49 http://ftp.uk.debian.org/debian/ unstable/main libxcb-render0 armel 1.7-2 [15.1 kB]
-Get:50 http://ftp.uk.debian.org/debian/ unstable/main libxcb-shm0 armel 1.7-2 [9358 B]
-Get:51 http://ftp.uk.debian.org/debian/ unstable/main libxrender1 armel 1:0.9.6-1 [30.4 kB]
-Get:52 http://ftp.uk.debian.org/debian/ unstable/main libcairo2 armel 1.10.2-6 [921 kB]
-Get:53 http://ftp.uk.debian.org/debian/ unstable/main libdatrie1 armel 0.2.4-2 [24.6 kB]
-Get:54 http://ftp.uk.debian.org/debian/ unstable/main x11-common all 1:7.6+6 [280 kB]
-Get:55 http://ftp.uk.debian.org/debian/ unstable/main libice6 armel 2:1.0.7-1 [50.2 kB]
-Get:56 http://ftp.uk.debian.org/debian/ unstable/main libjpeg62 armel 6b1-1 [90.1 kB]
-Get:57 http://ftp.uk.debian.org/debian/ unstable/main libjpeg62-dev armel 6b1-1 [195 kB]
-Get:58 http://ftp.uk.debian.org/debian/ unstable/main liblapack3gf armel 3.3.0-4 [2146 kB]
-Get:59 http://ftp.uk.debian.org/debian/ unstable/main liblapack-dev armel 3.3.0-4 [2348 kB]
-Get:60 http://ftp.uk.debian.org/debian/ unstable/main libncurses5-dev armel 5.9-1 [474 kB]
-Get:61 http://ftp.uk.debian.org/debian/ unstable/main libthai-data all 0.1.15-1 [201 kB]
-Get:62 http://ftp.uk.debian.org/debian/ unstable/main libthai0 armel 0.1.15-1 [40.0 kB]
-Get:63 http://ftp.uk.debian.org/debian/ unstable/main libxft2 armel 2.2.0-2 [55.0 kB]
-Get:64 http://ftp.uk.debian.org/debian/ unstable/main libpango1.0-0 armel 1.28.3-6 [411 kB]
-Get:65 http://ftp.uk.debian.org/debian/ unstable/main libpaper1 armel 1.1.24+nmu1 [22.6 kB]
-Get:66 http://ftp.uk.debian.org/debian/ unstable/main libpaper-utils armel 1.1.24+nmu1 [18.7 kB]
-Get:67 http://ftp.uk.debian.org/debian/ unstable/main libpcrecpp0 armel 8.12-3 [112 kB]
-Get:68 http://ftp.uk.debian.org/debian/ unstable/main libpcre3-dev armel 8.12-3 [301 kB]
-Get:69 http://ftp.uk.debian.org/debian/ unstable/main zlib1g-dev armel 1:1.2.3.4.dfsg-3 [190 kB]
-Get:70 http://ftp.uk.debian.org/debian/ unstable/main libpng12-dev armel 1.2.44-2 [262 kB]
-Get:71 http://ftp.uk.debian.org/debian/ unstable/main libreadline6-dev armel 6.2-2 [237 kB]
-Get:72 http://ftp.uk.debian.org/debian/ unstable/main libreadline-dev armel 6.2-2 [880 B]
-Get:73 http://ftp.uk.debian.org/debian/ unstable/main libsm6 armel 2:1.2.0-1 [28.1 kB]
-Get:74 http://ftp.uk.debian.org/debian/ unstable/main libtiff4 armel 3.9.5-1 [191 kB]
-Get:75 http://ftp.uk.debian.org/debian/ unstable/main libxext6 armel 2:1.3.0-1 [45.8 kB]
-Get:76 http://ftp.uk.debian.org/debian/ unstable/main libxss1 armel 1:1.2.1-1 [16.0 kB]
-Get:77 http://ftp.uk.debian.org/debian/ unstable/main libxt6 armel 1:1.1.1-1 [179 kB]
-Get:78 http://ftp.uk.debian.org/debian/ unstable/main zip armel 3.0-3 [331 kB]
-Get:79 http://ftp.uk.debian.org/debian/ unstable/main unzip armel 6.0-4 [191 kB]
-Get:80 http://ftp.uk.debian.org/debian/ unstable/main xdg-utils all 1.1.0~rc1-2 [70.2 kB]
-Get:81 http://ftp.uk.debian.org/debian/ unstable/main tcl8.5 armel 8.5.9-2 [1562 kB]
-Get:82 http://ftp.uk.debian.org/debian/ unstable/main tk8.5 armel 8.5.9-2 [1138 kB]
-Get:83 http://ftp.uk.debian.org/debian/ unstable/main r-base-core armel 2.13.0-2 [14.9 MB]
-Get:84 http://ftp.uk.debian.org/debian/ unstable/main r-base-dev all 2.13.0-2 [3490 B]
+Get:1 http://ftp.uk.debian.org/debian/ unstable/main libpipeline1 armel 1.2.0-3 [33.8 kB]
+Get:2 http://ftp.uk.debian.org/debian/ unstable/main libpcre3 armel 8.12-4 [223 kB]
+Get:3 http://ftp.uk.debian.org/debian/ unstable/main libdatrie1 armel 0.2.4-3 [25.4 kB]
+Get:4 http://ftp.uk.debian.org/debian/ unstable/main libexpat1 armel 2.0.1-7 [118 kB]
+Get:5 http://ftp.uk.debian.org/debian/ unstable/main libfreetype6 armel 2.4.6-1 [387 kB]
+Get:6 http://ftp.uk.debian.org/debian/ unstable/main ucf all 3.0025+nmu2 [70.6 kB]
+Get:7 http://ftp.uk.debian.org/debian/ unstable/main ttf-dejavu-core all 2.33-1 [1550 kB]
+Get:8 http://ftp.uk.debian.org/debian/ unstable/main fontconfig-config all 2.8.0-3 [221 kB]
+Get:9 http://ftp.uk.debian.org/debian/ unstable/main libfontconfig1 armel 2.8.0-3 [270 kB]
+Get:10 http://ftp.uk.debian.org/debian/ unstable/main libgfortran3 armel 4.6.1-6 [255 kB]
+Get:11 http://ftp.uk.debian.org/debian/ unstable/main x11-common all 1:7.6+7 [275 kB]
+Get:12 http://ftp.uk.debian.org/debian/ unstable/main libice6 armel 2:1.0.7-2 [50.1 kB]
+Get:13 http://ftp.uk.debian.org/debian/ unstable/main libpixman-1-0 armel 0.22.2-1 [372 kB]
+Get:14 http://ftp.uk.debian.org/debian/ unstable/main libpng12-0 armel 1.2.46-3 [181 kB]
+Get:15 http://ftp.uk.debian.org/debian/ unstable/main libxau6 armel 1:1.0.6-3 [16.0 kB]
+Get:16 http://ftp.uk.debian.org/debian/ unstable/main libxdmcp6 armel 1:1.1.0-3 [21.5 kB]
+Get:17 http://ftp.uk.debian.org/debian/ unstable/main libxcb1 armel 1.7-3 [39.5 kB]
+Get:18 http://ftp.uk.debian.org/debian/ unstable/main libx11-data all 2:1.4.4-1 [183 kB]
+Get:19 http://ftp.uk.debian.org/debian/ unstable/main libx11-6 armel 2:1.4.4-1 [832 kB]
+Get:20 http://ftp.uk.debian.org/debian/ unstable/main libxcb-render0 armel 1.7-3 [14.8 kB]
+Get:21 http://ftp.uk.debian.org/debian/ unstable/main libxcb-shm0 armel 1.7-3 [9178 B]
+Get:22 http://ftp.uk.debian.org/debian/ unstable/main libxrender1 armel 1:0.9.6-2 [30.4 kB]
+Get:23 http://ftp.uk.debian.org/debian/ unstable/main libcairo2 armel 1.10.2-6.1 [908 kB]
+Get:24 http://ftp.uk.debian.org/debian/ unstable/main libglib2.0-0 armel 2.28.6-1 [1535 kB]
+Get:25 http://ftp.uk.debian.org/debian/ unstable/main libthai-data all 0.1.15-2 [201 kB]
+Get:26 http://ftp.uk.debian.org/debian/ unstable/main libthai0 armel 0.1.15-2 [40.4 kB]
+Get:27 http://ftp.uk.debian.org/debian/ unstable/main libxft2 armel 2.2.0-3 [53.7 kB]
+Get:28 http://ftp.uk.debian.org/debian/ unstable/main fontconfig armel 2.8.0-3 [334 kB]
+Get:29 http://ftp.uk.debian.org/debian/ unstable/main libpango1.0-0 armel 1.28.4-2 [407 kB]
+Get:30 http://ftp.uk.debian.org/debian/ unstable/main libpcrecpp0 armel 8.12-4 [111 kB]
+Get:31 http://ftp.uk.debian.org/debian/ unstable/main libsm6 armel 2:1.2.0-2 [28.1 kB]
+Get:32 http://ftp.uk.debian.org/debian/ unstable/main libxext6 armel 2:1.3.0-3 [46.0 kB]
+Get:33 http://ftp.uk.debian.org/debian/ unstable/main libxss1 armel 1:1.2.1-2 [16.0 kB]
+Get:34 http://ftp.uk.debian.org/debian/ unstable/main libxt6 armel 1:1.1.1-2 [177 kB]
+Get:35 http://ftp.uk.debian.org/debian/ unstable/main bsdmainutils armel 8.2.3 [207 kB]
+Get:36 http://ftp.uk.debian.org/debian/ unstable/main groff-base armel 1.21-6 [1072 kB]
+Get:37 http://ftp.uk.debian.org/debian/ unstable/main man-db armel 2.6.0.2-2 [990 kB]
+Get:38 http://ftp.uk.debian.org/debian/ unstable/main libmagic1 armel 5.04-5+b1 [235 kB]
+Get:39 http://ftp.uk.debian.org/debian/ unstable/main file armel 5.04-5+b1 [49.4 kB]
+Get:40 http://ftp.uk.debian.org/debian/ unstable/main gettext-base armel 0.18.1.1-4 [139 kB]
+Get:41 http://ftp.uk.debian.org/debian/ unstable/main libxml2 armel 2.7.8.dfsg-4 [815 kB]
+Get:42 http://ftp.uk.debian.org/debian/ unstable/main html2text armel 1.3.2a-15 [97.0 kB]
+Get:43 http://ftp.uk.debian.org/debian/ unstable/main libcroco3 armel 0.6.2-1 [113 kB]
+Get:44 http://ftp.uk.debian.org/debian/ unstable/main libunistring0 armel 0.9.3-4 [409 kB]
+Get:45 http://ftp.uk.debian.org/debian/ unstable/main gettext armel 0.18.1.1-4 [1984 kB]
+Get:46 http://ftp.uk.debian.org/debian/ unstable/main intltool-debian all 0.35.0+20060710.1 [30.8 kB]
+Get:47 http://ftp.uk.debian.org/debian/ unstable/main po-debconf all 1.0.16+nmu1 [223 kB]
+Get:48 http://ftp.uk.debian.org/debian/ unstable/main debhelper all 8.9.4 [561 kB]
+Get:49 http://ftp.uk.debian.org/debian/ unstable/main cdbs all 0.4.96 [75.8 kB]
+Get:50 http://ftp.uk.debian.org/debian/ unstable/main dpatch all 2.0.31 [92.3 kB]
+Get:51 http://ftp.uk.debian.org/debian/ unstable/main gfortran-4.6 armel 4.6.1-6 [4925 kB]
+Get:52 http://ftp.uk.debian.org/debian/ unstable/main gfortran armel 4:4.6.1-2 [1124 B]
+Get:53 http://ftp.uk.debian.org/debian/ unstable/main libblas3gf armel 1.2.20110419-2 [278 kB]
+Get:54 http://ftp.uk.debian.org/debian/ unstable/main libblas-dev armel 1.2.20110419-2 [287 kB]
+Get:55 http://ftp.uk.debian.org/debian/ unstable/main libbz2-dev armel 1.0.5-6 [34.6 kB]
+Get:56 http://ftp.uk.debian.org/debian/ unstable/main libjpeg62 armel 6b1-2 [88.6 kB]
+Get:57 http://ftp.uk.debian.org/debian/ unstable/main libjpeg8 armel 8c-2 [152 kB]
+Get:58 http://ftp.uk.debian.org/debian/ unstable/main libjpeg8-dev armel 8c-2 [258 kB]
+Get:59 http://ftp.uk.debian.org/debian/ unstable/main liblapack3gf armel 3.3.1-1 [2200 kB]
+Get:60 http://ftp.uk.debian.org/debian/ unstable/main liblapack-dev armel 3.3.1-1 [2374 kB]
+Get:61 http://ftp.uk.debian.org/debian/ unstable/main libncurses5-dev armel 5.9-1 [474 kB]
+Get:62 http://ftp.uk.debian.org/debian/ unstable/main libpaper1 armel 1.1.24+nmu1 [22.6 kB]
+Get:63 http://ftp.uk.debian.org/debian/ unstable/main libpaper-utils armel 1.1.24+nmu1 [18.7 kB]
+Get:64 http://ftp.uk.debian.org/debian/ unstable/main libpcre3-dev armel 8.12-4 [301 kB]
+Get:65 http://ftp.uk.debian.org/debian/ unstable/main zlib1g-dev armel 1:1.2.3.4.dfsg-3 [190 kB]
+Get:66 http://ftp.uk.debian.org/debian/ unstable/main libpng12-dev armel 1.2.46-3 [259 kB]
+Get:67 http://ftp.uk.debian.org/debian/ unstable/main libreadline6-dev armel 6.2-2 [237 kB]
+Get:68 http://ftp.uk.debian.org/debian/ unstable/main libreadline-dev armel 6.2-2 [880 B]
+Get:69 http://ftp.uk.debian.org/debian/ unstable/main libtiff4 armel 3.9.5-1 [191 kB]
+Get:70 http://ftp.uk.debian.org/debian/ unstable/main zip armel 3.0-4 [329 kB]
+Get:71 http://ftp.uk.debian.org/debian/ unstable/main unzip armel 6.0-5 [190 kB]
+Get:72 http://ftp.uk.debian.org/debian/ unstable/main xdg-utils all 1.1.0~rc1-2 [70.2 kB]
+Get:73 http://ftp.uk.debian.org/debian/ unstable/main tcl8.5 armel 8.5.10-1 [1569 kB]
+Get:74 http://ftp.uk.debian.org/debian/ unstable/main tk8.5 armel 8.5.10-1 [1123 kB]
+Get:75 http://ftp.uk.debian.org/debian/ unstable/main r-base-core armel 2.13.1-1 [15.1 MB]
+Get:76 http://ftp.uk.debian.org/debian/ unstable/main r-base-dev all 2.13.1-1 [3490 B]
debconf: delaying package configuration, since apt-utils is not installed
-Fetched 62.8 MB in 19s (3171 kB/s)
-(Reading database ... 10482 files and directories currently installed.)
-Preparing to replace libreadline6 6.2-1 (using .../libreadline6_6.2-2_armel.deb) ...
-Unpacking replacement libreadline6 ...
-Setting up libreadline6 (6.2-2) ...
-(Reading database ... 10482 files and directories currently installed.)
-Preparing to replace libgomp1 4.6.0-6 (using .../libgomp1_4.6.0-10_armel.deb) ...
-Unpacking replacement libgomp1 ...
-Preparing to replace gcc-4.6-base 4.6.0-6 (using .../gcc-4.6-base_4.6.0-10_armel.deb) ...
-Unpacking replacement gcc-4.6-base ...
-Setting up gcc-4.6-base (4.6.0-10) ...
-(Reading database ... 10481 files and directories currently installed.)
-Preparing to replace libstdc++6 4.6.0-6 (using .../libstdc++6_4.6.0-10_armel.deb) ...
-Unpacking replacement libstdc++6 ...
-Setting up libstdc++6 (4.6.0-10) ...
-(Reading database ... 10481 files and directories currently installed.)
-Preparing to replace cpp-4.6 4.6.0-6 (using .../cpp-4.6_4.6.0-10_armel.deb) ...
-Unpacking replacement cpp-4.6 ...
-Preparing to replace libstdc++6-4.6-dev 4.6.0-6 (using .../libstdc++6-4.6-dev_4.6.0-10_armel.deb) ...
-Unpacking replacement libstdc++6-4.6-dev ...
-Preparing to replace g++-4.6 4.6.0-6 (using .../g++-4.6_4.6.0-10_armel.deb) ...
-Unpacking replacement g++-4.6 ...
-Preparing to replace gcc-4.6 4.6.0-6 (using .../gcc-4.6_4.6.0-10_armel.deb) ...
-Unpacking replacement gcc-4.6 ...
-Preparing to replace libgcc1 1:4.6.0-6 (using .../libgcc1_1%3a4.6.0-10_armel.deb) ...
-Unpacking replacement libgcc1 ...
-Setting up libgcc1 (1:4.6.0-10) ...
+Fetched 46.8 MB in 20s (2309 kB/s)
+Selecting previously deselected package libpipeline1.
+(Reading database ... 10542 files and directories currently installed.)
+Unpacking libpipeline1 (from .../libpipeline1_1.2.0-3_armel.deb) ...
+Selecting previously deselected package libpcre3.
+Unpacking libpcre3 (from .../libpcre3_8.12-4_armel.deb) ...
+Selecting previously deselected package libdatrie1.
+Unpacking libdatrie1 (from .../libdatrie1_0.2.4-3_armel.deb) ...
+Selecting previously deselected package libexpat1.
+Unpacking libexpat1 (from .../libexpat1_2.0.1-7_armel.deb) ...
+Selecting previously deselected package libfreetype6.
+Unpacking libfreetype6 (from .../libfreetype6_2.4.6-1_armel.deb) ...
+Selecting previously deselected package ucf.
+Unpacking ucf (from .../ucf_3.0025+nmu2_all.deb) ...
+Moving old data out of the way
+Selecting previously deselected package ttf-dejavu-core.
+Unpacking ttf-dejavu-core (from .../ttf-dejavu-core_2.33-1_all.deb) ...
+Selecting previously deselected package fontconfig-config.
+Unpacking fontconfig-config (from .../fontconfig-config_2.8.0-3_all.deb) ...
+Selecting previously deselected package libfontconfig1.
+Unpacking libfontconfig1 (from .../libfontconfig1_2.8.0-3_armel.deb) ...
+Selecting previously deselected package libgfortran3.
+Unpacking libgfortran3 (from .../libgfortran3_4.6.1-6_armel.deb) ...
+Selecting previously deselected package x11-common.
+Unpacking x11-common (from .../x11-common_1%3a7.6+7_all.deb) ...
+Selecting previously deselected package libice6.
+Unpacking libice6 (from .../libice6_2%3a1.0.7-2_armel.deb) ...
+Selecting previously deselected package libpixman-1-0.
+Unpacking libpixman-1-0 (from .../libpixman-1-0_0.22.2-1_armel.deb) ...
+Selecting previously deselected package libpng12-0.
+Unpacking libpng12-0 (from .../libpng12-0_1.2.46-3_armel.deb) ...
+Selecting previously deselected package libxau6.
+Unpacking libxau6 (from .../libxau6_1%3a1.0.6-3_armel.deb) ...
+Selecting previously deselected package libxdmcp6.
+Unpacking libxdmcp6 (from .../libxdmcp6_1%3a1.1.0-3_armel.deb) ...
+Selecting previously deselected package libxcb1.
+Unpacking libxcb1 (from .../libxcb1_1.7-3_armel.deb) ...
+Selecting previously deselected package libx11-data.
+Unpacking libx11-data (from .../libx11-data_2%3a1.4.4-1_all.deb) ...
+Selecting previously deselected package libx11-6.
+Unpacking libx11-6 (from .../libx11-6_2%3a1.4.4-1_armel.deb) ...
+Selecting previously deselected package libxcb-render0.
+Unpacking libxcb-render0 (from .../libxcb-render0_1.7-3_armel.deb) ...
+Selecting previously deselected package libxcb-shm0.
+Unpacking libxcb-shm0 (from .../libxcb-shm0_1.7-3_armel.deb) ...
+Selecting previously deselected package libxrender1.
+Unpacking libxrender1 (from .../libxrender1_1%3a0.9.6-2_armel.deb) ...
+Selecting previously deselected package libcairo2.
+Unpacking libcairo2 (from .../libcairo2_1.10.2-6.1_armel.deb) ...
+Selecting previously deselected package libglib2.0-0.
+Unpacking libglib2.0-0 (from .../libglib2.0-0_2.28.6-1_armel.deb) ...
+Selecting previously deselected package libthai-data.
+Unpacking libthai-data (from .../libthai-data_0.1.15-2_all.deb) ...
+Selecting previously deselected package libthai0.
+Unpacking libthai0 (from .../libthai0_0.1.15-2_armel.deb) ...
+Selecting previously deselected package libxft2.
+Unpacking libxft2 (from .../libxft2_2.2.0-3_armel.deb) ...
+Selecting previously deselected package fontconfig.
+Unpacking fontconfig (from .../fontconfig_2.8.0-3_armel.deb) ...
+Selecting previously deselected package libpango1.0-0.
+Unpacking libpango1.0-0 (from .../libpango1.0-0_1.28.4-2_armel.deb) ...
+Selecting previously deselected package libpcrecpp0.
+Unpacking libpcrecpp0 (from .../libpcrecpp0_8.12-4_armel.deb) ...
+Selecting previously deselected package libsm6.
+Unpacking libsm6 (from .../libsm6_2%3a1.2.0-2_armel.deb) ...
+Selecting previously deselected package libxext6.
+Unpacking libxext6 (from .../libxext6_2%3a1.3.0-3_armel.deb) ...
+Selecting previously deselected package libxss1.
+Unpacking libxss1 (from .../libxss1_1%3a1.2.1-2_armel.deb) ...
+Selecting previously deselected package libxt6.
+Unpacking libxt6 (from .../libxt6_1%3a1.1.1-2_armel.deb) ...
Selecting previously deselected package bsdmainutils.
-(Reading database ... 10481 files and directories currently installed.)
-Unpacking bsdmainutils (from .../bsdmainutils_8.2.2_armel.deb) ...
+Unpacking bsdmainutils (from .../bsdmainutils_8.2.3_armel.deb) ...
Selecting previously deselected package groff-base.
-Unpacking groff-base (from .../groff-base_1.21-5_armel.deb) ...
-Selecting previously deselected package libpipeline1.
-Unpacking libpipeline1 (from .../libpipeline1_1.2.0-2_armel.deb) ...
+Unpacking groff-base (from .../groff-base_1.21-6_armel.deb) ...
Selecting previously deselected package man-db.
-Unpacking man-db (from .../man-db_2.6.0.2-1_armel.deb) ...
+Unpacking man-db (from .../man-db_2.6.0.2-2_armel.deb) ...
Selecting previously deselected package libmagic1.
Unpacking libmagic1 (from .../libmagic1_5.04-5+b1_armel.deb) ...
Selecting previously deselected package file.
Unpacking file (from .../file_5.04-5+b1_armel.deb) ...
Selecting previously deselected package gettext-base.
-Unpacking gettext-base (from .../gettext-base_0.18.1.1-3_armel.deb) ...
-Selecting previously deselected package libpcre3.
-Unpacking libpcre3 (from .../libpcre3_8.12-3_armel.deb) ...
+Unpacking gettext-base (from .../gettext-base_0.18.1.1-4_armel.deb) ...
Selecting previously deselected package libxml2.
-Unpacking libxml2 (from .../libxml2_2.7.8.dfsg-2+b1_armel.deb) ...
-Selecting previously deselected package ucf.
-Unpacking ucf (from .../ucf_3.0025+nmu2_all.deb) ...
-Moving old data out of the way
+Unpacking libxml2 (from .../libxml2_2.7.8.dfsg-4_armel.deb) ...
Selecting previously deselected package html2text.
Unpacking html2text (from .../html2text_1.3.2a-15_armel.deb) ...
-Selecting previously deselected package libglib2.0-0.
-Unpacking libglib2.0-0 (from .../libglib2.0-0_2.28.6-1_armel.deb) ...
Selecting previously deselected package libcroco3.
Unpacking libcroco3 (from .../libcroco3_0.6.2-1_armel.deb) ...
Selecting previously deselected package libunistring0.
Unpacking libunistring0 (from .../libunistring0_0.9.3-4_armel.deb) ...
Selecting previously deselected package gettext.
-Unpacking gettext (from .../gettext_0.18.1.1-3_armel.deb) ...
+Unpacking gettext (from .../gettext_0.18.1.1-4_armel.deb) ...
Selecting previously deselected package intltool-debian.
Unpacking intltool-debian (from .../intltool-debian_0.35.0+20060710.1_all.deb) ...
Selecting previously deselected package po-debconf.
Unpacking po-debconf (from .../po-debconf_1.0.16+nmu1_all.deb) ...
Selecting previously deselected package debhelper.
-Unpacking debhelper (from .../debhelper_8.1.6_all.deb) ...
+Unpacking debhelper (from .../debhelper_8.9.4_all.deb) ...
Selecting previously deselected package cdbs.
-Unpacking cdbs (from .../archives/cdbs_0.4.94_all.deb) ...
+Unpacking cdbs (from .../archives/cdbs_0.4.96_all.deb) ...
Selecting previously deselected package dpatch.
Unpacking dpatch (from .../archives/dpatch_2.0.31_all.deb) ...
-Selecting previously deselected package libexpat1.
-Unpacking libexpat1 (from .../libexpat1_2.0.1-7_armel.deb) ...
-Selecting previously deselected package libfreetype6.
-Unpacking libfreetype6 (from .../libfreetype6_2.4.4-1_armel.deb) ...
-Selecting previously deselected package ttf-dejavu-core.
-Unpacking ttf-dejavu-core (from .../ttf-dejavu-core_2.33-1_all.deb) ...
-Selecting previously deselected package fontconfig-config.
-Unpacking fontconfig-config (from .../fontconfig-config_2.8.0-2.2_all.deb) ...
-Selecting previously deselected package libfontconfig1.
-Unpacking libfontconfig1 (from .../libfontconfig1_2.8.0-2.2_armel.deb) ...
-Selecting previously deselected package fontconfig.
-Unpacking fontconfig (from .../fontconfig_2.8.0-2.2_armel.deb) ...
-Selecting previously deselected package libgfortran3.
-Unpacking libgfortran3 (from .../libgfortran3_4.6.0-10_armel.deb) ...
Selecting previously deselected package gfortran-4.6.
-Unpacking gfortran-4.6 (from .../gfortran-4.6_4.6.0-10_armel.deb) ...
+Unpacking gfortran-4.6 (from .../gfortran-4.6_4.6.1-6_armel.deb) ...
Selecting previously deselected package gfortran.
-Unpacking gfortran (from .../gfortran_4%3a4.6.0-5_armel.deb) ...
+Unpacking gfortran (from .../gfortran_4%3a4.6.1-2_armel.deb) ...
Selecting previously deselected package libblas3gf.
-Unpacking libblas3gf (from .../libblas3gf_1.2-8_armel.deb) ...
+Unpacking libblas3gf (from .../libblas3gf_1.2.20110419-2_armel.deb) ...
Selecting previously deselected package libblas-dev.
-Unpacking libblas-dev (from .../libblas-dev_1.2-8_armel.deb) ...
+Unpacking libblas-dev (from .../libblas-dev_1.2.20110419-2_armel.deb) ...
Selecting previously deselected package libbz2-dev.
Unpacking libbz2-dev (from .../libbz2-dev_1.0.5-6_armel.deb) ...
-Selecting previously deselected package libpixman-1-0.
-Unpacking libpixman-1-0 (from .../libpixman-1-0_0.21.8-1_armel.deb) ...
-Selecting previously deselected package libpng12-0.
-Unpacking libpng12-0 (from .../libpng12-0_1.2.44-2_armel.deb) ...
-Selecting previously deselected package libxau6.
-Unpacking libxau6 (from .../libxau6_1%3a1.0.6-1_armel.deb) ...
-Selecting previously deselected package libxdmcp6.
-Unpacking libxdmcp6 (from .../libxdmcp6_1%3a1.1.0-1_armel.deb) ...
-Selecting previously deselected package libxcb1.
-Unpacking libxcb1 (from .../libxcb1_1.7-2_armel.deb) ...
-Selecting previously deselected package libx11-data.
-Unpacking libx11-data (from .../libx11-data_2%3a1.4.3-1_all.deb) ...
-Selecting previously deselected package libx11-6.
-Unpacking libx11-6 (from .../libx11-6_2%3a1.4.3-1_armel.deb) ...
-Selecting previously deselected package libxcb-render0.
-Unpacking libxcb-render0 (from .../libxcb-render0_1.7-2_armel.deb) ...
-Selecting previously deselected package libxcb-shm0.
-Unpacking libxcb-shm0 (from .../libxcb-shm0_1.7-2_armel.deb) ...
-Selecting previously deselected package libxrender1.
-Unpacking libxrender1 (from .../libxrender1_1%3a0.9.6-1_armel.deb) ...
-Selecting previously deselected package libcairo2.
-Unpacking libcairo2 (from .../libcairo2_1.10.2-6_armel.deb) ...
-Selecting previously deselected package libdatrie1.
-Unpacking libdatrie1 (from .../libdatrie1_0.2.4-2_armel.deb) ...
-Selecting previously deselected package x11-common.
-Unpacking x11-common (from .../x11-common_1%3a7.6+6_all.deb) ...
-Selecting previously deselected package libice6.
-Unpacking libice6 (from .../libice6_2%3a1.0.7-1_armel.deb) ...
Selecting previously deselected package libjpeg62.
-Unpacking libjpeg62 (from .../libjpeg62_6b1-1_armel.deb) ...
-Selecting previously deselected package libjpeg62-dev.
-Unpacking libjpeg62-dev (from .../libjpeg62-dev_6b1-1_armel.deb) ...
+Unpacking libjpeg62 (from .../libjpeg62_6b1-2_armel.deb) ...
+Selecting previously deselected package libjpeg8.
+Unpacking libjpeg8 (from .../libjpeg8_8c-2_armel.deb) ...
+Selecting previously deselected package libjpeg8-dev.
+Unpacking libjpeg8-dev (from .../libjpeg8-dev_8c-2_armel.deb) ...
Selecting previously deselected package liblapack3gf.
-Unpacking liblapack3gf (from .../liblapack3gf_3.3.0-4_armel.deb) ...
+Unpacking liblapack3gf (from .../liblapack3gf_3.3.1-1_armel.deb) ...
Selecting previously deselected package liblapack-dev.
-Unpacking liblapack-dev (from .../liblapack-dev_3.3.0-4_armel.deb) ...
+Unpacking liblapack-dev (from .../liblapack-dev_3.3.1-1_armel.deb) ...
Selecting previously deselected package libncurses5-dev.
Unpacking libncurses5-dev (from .../libncurses5-dev_5.9-1_armel.deb) ...
-Selecting previously deselected package libthai-data.
-Unpacking libthai-data (from .../libthai-data_0.1.15-1_all.deb) ...
-Selecting previously deselected package libthai0.
-Unpacking libthai0 (from .../libthai0_0.1.15-1_armel.deb) ...
-Selecting previously deselected package libxft2.
-Unpacking libxft2 (from .../libxft2_2.2.0-2_armel.deb) ...
-Selecting previously deselected package libpango1.0-0.
-Unpacking libpango1.0-0 (from .../libpango1.0-0_1.28.3-6_armel.deb) ...
Selecting previously deselected package libpaper1.
Unpacking libpaper1 (from .../libpaper1_1.1.24+nmu1_armel.deb) ...
Selecting previously deselected package libpaper-utils.
Unpacking libpaper-utils (from .../libpaper-utils_1.1.24+nmu1_armel.deb) ...
-Selecting previously deselected package libpcrecpp0.
-Unpacking libpcrecpp0 (from .../libpcrecpp0_8.12-3_armel.deb) ...
Selecting previously deselected package libpcre3-dev.
-Unpacking libpcre3-dev (from .../libpcre3-dev_8.12-3_armel.deb) ...
+Unpacking libpcre3-dev (from .../libpcre3-dev_8.12-4_armel.deb) ...
Selecting previously deselected package zlib1g-dev.
Unpacking zlib1g-dev (from .../zlib1g-dev_1%3a1.2.3.4.dfsg-3_armel.deb) ...
Selecting previously deselected package libpng12-dev.
-Unpacking libpng12-dev (from .../libpng12-dev_1.2.44-2_armel.deb) ...
+Unpacking libpng12-dev (from .../libpng12-dev_1.2.46-3_armel.deb) ...
Selecting previously deselected package libreadline6-dev.
Unpacking libreadline6-dev (from .../libreadline6-dev_6.2-2_armel.deb) ...
Selecting previously deselected package libreadline-dev.
Unpacking libreadline-dev (from .../libreadline-dev_6.2-2_armel.deb) ...
-Selecting previously deselected package libsm6.
-Unpacking libsm6 (from .../libsm6_2%3a1.2.0-1_armel.deb) ...
Selecting previously deselected package libtiff4.
Unpacking libtiff4 (from .../libtiff4_3.9.5-1_armel.deb) ...
-Selecting previously deselected package libxext6.
-Unpacking libxext6 (from .../libxext6_2%3a1.3.0-1_armel.deb) ...
-Selecting previously deselected package libxss1.
-Unpacking libxss1 (from .../libxss1_1%3a1.2.1-1_armel.deb) ...
-Selecting previously deselected package libxt6.
-Unpacking libxt6 (from .../libxt6_1%3a1.1.1-1_armel.deb) ...
Selecting previously deselected package zip.
-Unpacking zip (from .../archives/zip_3.0-3_armel.deb) ...
+Unpacking zip (from .../archives/zip_3.0-4_armel.deb) ...
Selecting previously deselected package unzip.
-Unpacking unzip (from .../archives/unzip_6.0-4_armel.deb) ...
+Unpacking unzip (from .../archives/unzip_6.0-5_armel.deb) ...
Selecting previously deselected package xdg-utils.
Unpacking xdg-utils (from .../xdg-utils_1.1.0~rc1-2_all.deb) ...
Selecting previously deselected package tcl8.5.
-Unpacking tcl8.5 (from .../tcl8.5_8.5.9-2_armel.deb) ...
+Unpacking tcl8.5 (from .../tcl8.5_8.5.10-1_armel.deb) ...
Selecting previously deselected package tk8.5.
-Unpacking tk8.5 (from .../tk8.5_8.5.9-2_armel.deb) ...
+Unpacking tk8.5 (from .../tk8.5_8.5.10-1_armel.deb) ...
Selecting previously deselected package r-base-core.
-Unpacking r-base-core (from .../r-base-core_2.13.0-2_armel.deb) ...
+Unpacking r-base-core (from .../r-base-core_2.13.1-1_armel.deb) ...
Selecting previously deselected package r-base-dev.
-Unpacking r-base-dev (from .../r-base-dev_2.13.0-2_all.deb) ...
-Setting up libgomp1 (4.6.0-10) ...
-Setting up cpp-4.6 (4.6.0-10) ...
-Setting up gcc-4.6 (4.6.0-10) ...
-Setting up bsdmainutils (8.2.2) ...
+Unpacking r-base-dev (from .../r-base-dev_2.13.1-1_all.deb) ...
+Setting up libpipeline1 (1.2.0-3) ...
+Setting up libpcre3 (8.12-4) ...
+Setting up libdatrie1 (0.2.4-3) ...
+Setting up libexpat1 (2.0.1-7) ...
+Setting up libfreetype6 (2.4.6-1) ...
+Setting up ucf (3.0025+nmu2) ...
+Setting up ttf-dejavu-core (2.33-1) ...
+Setting up fontconfig-config (2.8.0-3) ...
+Setting up libfontconfig1 (2.8.0-3) ...
+Setting up libgfortran3 (4.6.1-6) ...
+Setting up x11-common (1:7.6+7) ...
+All runlevel operations denied by policy
+invoke-rc.d: policy-rc.d denied execution of start.
+Setting up libice6 (2:1.0.7-2) ...
+Setting up libpixman-1-0 (0.22.2-1) ...
+Setting up libpng12-0 (1.2.46-3) ...
+Setting up libxau6 (1:1.0.6-3) ...
+Setting up libxdmcp6 (1:1.1.0-3) ...
+Setting up libxcb1 (1.7-3) ...
+Setting up libx11-data (2:1.4.4-1) ...
+Setting up libx11-6 (2:1.4.4-1) ...
+Setting up libxcb-render0 (1.7-3) ...
+Setting up libxcb-shm0 (1.7-3) ...
+Setting up libxrender1 (1:0.9.6-2) ...
+Setting up libcairo2 (1.10.2-6.1) ...
+Setting up libglib2.0-0 (2.28.6-1) ...
+No schema files found: doing nothing.
+Setting up libthai-data (0.1.15-2) ...
+Setting up libthai0 (0.1.15-2) ...
+Setting up libxft2 (2.2.0-3) ...
+Setting up fontconfig (2.8.0-3) ...
+Cleaning up old fontconfig caches... done.
+Regenerating fonts cache... done.
+Setting up libpango1.0-0 (1.28.4-2) ...
+Setting up libpcrecpp0 (8.12-4) ...
+Setting up libsm6 (2:1.2.0-2) ...
+Setting up libxext6 (2:1.3.0-3) ...
+Setting up libxss1 (1:1.2.1-2) ...
+Setting up libxt6 (1:1.1.1-2) ...
+Setting up bsdmainutils (8.2.3) ...
update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode.
update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode.
-Setting up groff-base (1.21-5) ...
-Setting up libpipeline1 (1.2.0-2) ...
-Setting up man-db (2.6.0.2-1) ...
+Setting up groff-base (1.21-6) ...
+Setting up man-db (2.6.0.2-2) ...
Building database of manual pages ...
Setting up libmagic1 (5.04-5+b1) ...
Setting up file (5.04-5+b1) ...
-Setting up gettext-base (0.18.1.1-3) ...
-Setting up libpcre3 (8.12-3) ...
-Setting up libxml2 (2.7.8.dfsg-2+b1) ...
-Setting up ucf (3.0025+nmu2) ...
+Setting up gettext-base (0.18.1.1-4) ...
+Setting up libxml2 (2.7.8.dfsg-4) ...
Setting up html2text (1.3.2a-15) ...
-Setting up libglib2.0-0 (2.28.6-1) ...
-No schema files found: doing nothing.
Setting up libcroco3 (0.6.2-1) ...
Setting up libunistring0 (0.9.3-4) ...
-Setting up gettext (0.18.1.1-3) ...
+Setting up gettext (0.18.1.1-4) ...
Setting up intltool-debian (0.35.0+20060710.1) ...
Setting up po-debconf (1.0.16+nmu1) ...
-Setting up debhelper (8.1.6) ...
-Setting up cdbs (0.4.94) ...
+Setting up debhelper (8.9.4) ...
+Setting up cdbs (0.4.96) ...
Setting up dpatch (2.0.31) ...
-Setting up libexpat1 (2.0.1-7) ...
-Setting up libfreetype6 (2.4.4-1) ...
-Setting up ttf-dejavu-core (2.33-1) ...
-Setting up fontconfig-config (2.8.0-2.2) ...
-Setting up libfontconfig1 (2.8.0-2.2) ...
-Setting up fontconfig (2.8.0-2.2) ...
-Cleaning up old fontconfig caches... done.
-Regenerating fonts cache... done.
-Setting up libgfortran3 (4.6.0-10) ...
-Setting up gfortran-4.6 (4.6.0-10) ...
-Setting up gfortran (4:4.6.0-5) ...
+Setting up gfortran-4.6 (4.6.1-6) ...
+Setting up gfortran (4:4.6.1-2) ...
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode.
-Setting up libblas3gf (1.2-8) ...
+Setting up libblas3gf (1.2.20110419-2) ...
update-alternatives: using /usr/lib/libblas/libblas.so.3gf to provide /usr/lib/libblas.so.3gf (libblas.so.3gf) in auto mode.
-Setting up libblas-dev (1.2-8) ...
+Setting up libblas-dev (1.2.20110419-2) ...
update-alternatives: using /usr/lib/libblas/libblas.so to provide /usr/lib/libblas.so (libblas.so) in auto mode.
Setting up libbz2-dev (1.0.5-6) ...
-Setting up libpixman-1-0 (0.21.8-1) ...
-Setting up libpng12-0 (1.2.44-2) ...
-Setting up libxau6 (1:1.0.6-1) ...
-Setting up libxdmcp6 (1:1.1.0-1) ...
-Setting up libxcb1 (1.7-2) ...
-Setting up libx11-data (2:1.4.3-1) ...
-Setting up libx11-6 (2:1.4.3-1) ...
-Setting up libxcb-render0 (1.7-2) ...
-Setting up libxcb-shm0 (1.7-2) ...
-Setting up libxrender1 (1:0.9.6-1) ...
-Setting up libcairo2 (1.10.2-6) ...
-Setting up libdatrie1 (0.2.4-2) ...
-Setting up x11-common (1:7.6+6) ...
-All runlevel operations denied by policy
-invoke-rc.d: policy-rc.d denied execution of start.
-Setting up libice6 (2:1.0.7-1) ...
-Setting up libjpeg62 (6b1-1) ...
-Setting up libjpeg62-dev (6b1-1) ...
-Setting up liblapack3gf (3.3.0-4) ...
+Setting up libjpeg62 (6b1-2) ...
+Setting up libjpeg8 (8c-2) ...
+Setting up libjpeg8-dev (8c-2) ...
+Setting up liblapack3gf (3.3.1-1) ...
update-alternatives: using /usr/lib/lapack/liblapack.so.3gf to provide /usr/lib/liblapack.so.3gf (liblapack.so.3gf) in auto mode.
-Setting up liblapack-dev (3.3.0-4) ...
+Setting up liblapack-dev (3.3.1-1) ...
update-alternatives: using /usr/lib/lapack/liblapack.so to provide /usr/lib/liblapack.so (liblapack.so) in auto mode.
Setting up libncurses5-dev (5.9-1) ...
-Setting up libthai-data (0.1.15-1) ...
-Setting up libthai0 (0.1.15-1) ...
-Setting up libxft2 (2.2.0-2) ...
-Setting up libpango1.0-0 (1.28.3-6) ...
Setting up libpaper1 (1.1.24+nmu1) ...
Creating config file /etc/papersize with new version
Setting up libpaper-utils (1.1.24+nmu1) ...
-Setting up libpcrecpp0 (8.12-3) ...
-Setting up libpcre3-dev (8.12-3) ...
+Setting up libpcre3-dev (8.12-4) ...
Setting up zlib1g-dev (1:1.2.3.4.dfsg-3) ...
-Setting up libpng12-dev (1.2.44-2) ...
+Setting up libpng12-dev (1.2.46-3) ...
Setting up libreadline6-dev (6.2-2) ...
Setting up libreadline-dev (6.2-2) ...
-Setting up libsm6 (2:1.2.0-1) ...
Setting up libtiff4 (3.9.5-1) ...
-Setting up libxext6 (2:1.3.0-1) ...
-Setting up libxss1 (1:1.2.1-1) ...
-Setting up libxt6 (1:1.1.1-1) ...
-Setting up zip (3.0-3) ...
-Setting up unzip (6.0-4) ...
+Setting up zip (3.0-4) ...
+Setting up unzip (6.0-5) ...
Setting up xdg-utils (1.1.0~rc1-2) ...
-Setting up tcl8.5 (8.5.9-2) ...
+Setting up tcl8.5 (8.5.10-1) ...
update-alternatives: using /usr/bin/tclsh8.5 to provide /usr/bin/tclsh (tclsh) in auto mode.
-Setting up tk8.5 (8.5.9-2) ...
+Setting up tk8.5 (8.5.10-1) ...
update-alternatives: using /usr/bin/wish8.5 to provide /usr/bin/wish (wish) in auto mode.
-Setting up r-base-core (2.13.0-2) ...
+Setting up r-base-core (2.13.1-1) ...
Setting R_PAPERSIZE_USER default to 'a4'
Creating config file /etc/R/Renviron with new version
-Setting up r-base-dev (2.13.0-2) ...
-Setting up libstdc++6-4.6-dev (4.6.0-10) ...
-Setting up g++-4.6 (4.6.0-10) ...
+Setting up r-base-dev (2.13.1-1) ...
Removing negative dependencies:
Reading package lists...
Building dependency tree...
Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 31 not upgraded.
+0 upgraded, 0 newly installed, 0 to remove and 4 not upgraded.
Checking correctness of dependencies...
Kernel: Linux 2.6.32 armel (armv5tel)
-Toolchain package versions: binutils_2.21.51.20110421-3 dpkg-dev_1.16.0.2 g++-4.6_4.6.0-10 gcc-4.6_4.6.0-10 libc6-dev_2.13-2 libstdc++6_4.6.0-10 libstdc++6-4.6-dev_4.6.0-10 linux-libc-dev_2.6.38-3
-Package versions: apt_0.8.14.1 base-files_6.3 base-passwd_3.5.22 bash_4.1-3 binutils_2.21.51.20110421-3 bsdmainutils_8.2.2 bsdutils_1:2.17.2-9.1 build-essential_11.5 bzip2_1.0.5-6 cdbs_0.4.94 coreutils_8.5-1 cpp_4:4.6.0-5 cpp-4.6_4.6.0-10 dash_0.5.5.1-7.4 debconf_1.5.39 debfoster_2.7-1.1 debhelper_8.1.6 debian-archive-keyring_2010.08.28 debianutils_3.4.4 diffutils_1:3.0-1 dpatch_2.0.31 dpkg_1.16.0.2 dpkg-dev_1.16.0.2 e2fslibs_1.41.12-2 e2fsprogs_1.41.12-2 fakeroot_1.15.1-1 file_5.04-5+b1 findutils_4.4.2-1+b1 fontconfig_2.8.0-2.2 fontconfig-config_2.8.0-2.2 g++_4:4.6.0-5 g++-4.6_4.6.0-10 gcc_4:4.6.0-5 gcc-4.4-base_4.4.6-2 gcc-4.5-base_4.5.3-1 gcc-4.6_4.6.0-10 gcc-4.6-base_4.6.0-10 gettext_0.18.1.1-3 gettext-base_0.18.1.1-3 gfortran_4:4.6.0-5 gfortran-4.6_4.6.0-10 gnupg_1.4.11-3 gpgv_1.4.11-3 grep_2.6.3-3 groff-base_1.21-5 gzip_1.3.12-9 hostname_3.06 html2text_1.3.2a-15 initscripts_2.88dsf-13.2 insserv_1.14.0-2.1 intltool-debian_0.35.0+20060710.1 libacl1_2.2.49-4 libattr1_1:2.4.44-2 libblas-dev_1.2-8 libblas3gf_1.2-8 libblkid1_2.17.2-9.1 libbz2-1.0_1.0.5-6 libbz2-dev_1.0.5-6 libc-bin_2.13-2 libc-dev-bin_2.13-2 libc6_2.13-2 libc6-dev_2.13-2 libcairo2_1.10.2-6 libcloog-ppl0_0.15.9-3 libcomerr2_1.41.12-2 libcroco3_0.6.2-1 libdatrie1_0.2.4-2 libdb5.1_5.1.25-10 libdpkg-perl_1.16.0.2 libexpat1_2.0.1-7 libfontconfig1_2.8.0-2.2 libfreetype6_2.4.4-1 libgc1c2_1:7.1-7 libgcc1_1:4.6.0-10 libgdbm3_1.8.3-9 libgfortran3_4.6.0-10 libglib2.0-0_2.28.6-1 libgmp10_2:5.0.1+dfsg-7 libgmpxx4ldbl_2:5.0.1+dfsg-7 libgomp1_4.6.0-10 libice6_2:1.0.7-1 libjpeg62_6b1-1 libjpeg62-dev_6b1-1 liblapack-dev_3.3.0-4 liblapack3gf_3.3.0-4 liblzma2_5.0.0-2 libmagic1_5.04-5+b1 libmpc2_0.9-3 libmpfr4_3.0.1-1 libncurses5_5.9-1 libncurses5-dev_5.9-1 libpam-modules_1.1.2-3 libpam-runtime_1.1.2-3 libpam0g_1.1.2-3 libpango1.0-0_1.28.3-6 libpaper-utils_1.1.24+nmu1 libpaper1_1.1.24+nmu1 libpcre3_8.12-3 libpcre3-dev_8.12-3 libpcrecpp0_8.12-3 libpipeline1_1.2.0-2 libpixman-1-0_0.21.8-1 libpng12-0_1.2.44-2 libpng12-dev_1.2.44-2 libppl-c4_0.11.2-3 libppl9_0.11.2-3 libpwl5_0.11.2-3 libreadline-dev_6.2-2 libreadline6_6.2-2 libreadline6-dev_6.2-2 libselinux1_2.0.98-1 libsepol1_2.0.42-1 libslang2_2.2.4-2 libsm6_2:1.2.0-1 libss2_1.41.12-2 libstdc++6_4.6.0-10 libstdc++6-4.6-dev_4.6.0-10 libthai-data_0.1.15-1 libthai0_0.1.15-1 libtiff4_3.9.5-1 libtimedate-perl_1.2000-1 libunistring0_0.9.3-4 libusb-0.1-4_2:0.1.12-17 libuuid1_2.17.2-9.1 libx11-6_2:1.4.3-1 libx11-data_2:1.4.3-1 libxau6_1:1.0.6-1 libxcb-render0_1.7-2 libxcb-shm0_1.7-2 libxcb1_1.7-2 libxdmcp6_1:1.1.0-1 libxext6_2:1.3.0-1 libxft2_2.2.0-2 libxml2_2.7.8.dfsg-2+b1 libxrender1_1:0.9.6-1 libxss1_1:1.2.1-1 libxt6_1:1.1.1-1 linux-libc-dev_2.6.38-3 login_1:4.1.4.2+svn3283-3 lsb-base_3.2-27 make_3.81-8.1 man-db_2.6.0.2-1 mawk_1.3.3-15 mount_2.17.2-9.1 ncurses-base_5.9-1 ncurses-bin_5.9-1 passwd_1:4.1.4.2+svn3283-3 patch_2.6.1-1 perl_5.12.3-6 perl-base_5.12.3-6 perl-modules_5.12.3-6 po-debconf_1.0.16+nmu1 r-base-core_2.13.0-2 r-base-dev_2.13.0-2 readline-common_6.2-1 sed_4.2.1-9 sensible-utils_0.0.6 sudo_1.7.4p6-1 sysv-rc_2.88dsf-13.2 sysvinit_2.88dsf-13.2 sysvinit-utils_2.88dsf-13.2 tar_1.25-3 tcl8.5_8.5.9-2 tk8.5_8.5.9-2 ttf-dejavu-core_2.33-1 tzdata_2011g-1 ucf_3.0025+nmu2 unzip_6.0-4 util-linux_2.17.2-9.1 x11-common_1:7.6+6 xdg-utils_1.1.0~rc1-2 xz-utils_5.0.0-2 zip_3.0-3 zlib1g_1:1.2.3.4.dfsg-3 zlib1g-dev_1:1.2.3.4.dfsg-3
+Toolchain package versions: binutils_2.21.53.20110805-1 dpkg-dev_1.16.0.3 g++-4.6_4.6.1-6 gcc-4.6_4.6.1-6 libc6-dev_2.13-16 libstdc++6_4.6.1-6 libstdc++6-4.6-dev_4.6.1-6 linux-libc-dev_3.0.0-1
+Package versions: apt_0.8.15.5 base-files_6.5 base-passwd_3.5.23 bash_4.1-3 binutils_2.21.53.20110805-1 bsdmainutils_8.2.3 bsdutils_1:2.19.1-5 build-essential_11.5 bzip2_1.0.5-6 cdbs_0.4.96 coreutils_8.5-1 cpp_4:4.6.1-2 cpp-4.6_4.6.1-6 dash_0.5.5.1-7.4 debconf_1.5.41 debfoster_2.7-1.1 debhelper_8.9.4 debian-archive-keyring_2010.08.28 debianutils_4.0.2 diffutils_1:3.0-1 dpatch_2.0.31 dpkg_1.16.0.3 dpkg-dev_1.16.0.3 e2fslibs_1.42~WIP-2011-07-02-1 e2fsprogs_1.42~WIP-2011-07-02-1 fakeroot_1.16-1 file_5.04-5+b1 findutils_4.4.2-1+b1 fontconfig_2.8.0-3 fontconfig-config_2.8.0-3 g++_4:4.6.1-2 g++-4.6_4.6.1-6 gcc_4:4.6.1-2 gcc-4.4-base_4.4.6-7 gcc-4.5-base_4.5.3-5 gcc-4.6_4.6.1-6 gcc-4.6-base_4.6.1-6 gettext_0.18.1.1-4 gettext-base_0.18.1.1-4 gfortran_4:4.6.1-2 gfortran-4.6_4.6.1-6 gnupg_1.4.11-3 gpgv_1.4.11-3 grep_2.9-1 groff-base_1.21-6 gzip_1.4-1 hostname_3.06 html2text_1.3.2a-15 initscripts_2.88dsf-13.11 insserv_1.14.0-2.1 intltool-debian_0.35.0+20060710.1 libacl1_2.2.51-3 libattr1_1:2.4.46-3 libblas-dev_1.2.20110419-2 libblas3gf_1.2.20110419-2 libblkid1_2.19.1-5 libbz2-1.0_1.0.5-6 libbz2-dev_1.0.5-6 libc-bin_2.13-16 libc-dev-bin_2.13-16 libc6_2.13-16 libc6-dev_2.13-16 libcairo2_1.10.2-6.1 libcloog-ppl0_0.15.9-3 libcomerr2_1.42~WIP-2011-07-02-1 libcroco3_0.6.2-1 libdatrie1_0.2.4-3 libdb5.1_5.1.25-11 libdpkg-perl_1.16.0.3 libexpat1_2.0.1-7 libfontconfig1_2.8.0-3 libfreetype6_2.4.6-1 libgc1c2_1:7.1-8 libgcc1_1:4.6.1-6 libgdbm3_1.8.3-10 libgfortran3_4.6.1-6 libglib2.0-0_2.28.6-1 libgmp10_2:5.0.1+dfsg-7 libgmpxx4ldbl_2:5.0.1+dfsg-7 libgomp1_4.6.1-6 libice6_2:1.0.7-2 libjpeg62_6b1-2 libjpeg8_8c-2 libjpeg8-dev_8c-2 liblapack-dev_3.3.1-1 liblapack3gf_3.3.1-1 liblzma2_5.0.0-2 libmagic1_5.04-5+b1 libmount1_2.19.1-5 libmpc2_0.9-3 libmpfr4_3.0.1-5 libncurses5_5.9-1 libncurses5-dev_5.9-1 libpam-modules_1.1.3-2 libpam-modules-bin_1.1.3-2 libpam-runtime_1.1.3-2 libpam0g_1.1.3-2 libpango1.0-0_1.28.4-2 libpaper-utils_1.1.24+nmu1 libpaper1_1.1.24+nmu1 libpcre3_8.12-4 libpcre3-dev_8.12-4 libpcrecpp0_8.12-4 libpipeline1_1.2.0-3 libpixman-1-0_0.22.2-1 libpng12-0_1.2.46-3 libpng12-dev_1.2.46-3 libppl-c4_0.11.2-4 libppl9_0.11.2-4 libpwl5_0.11.2-4 libreadline-dev_6.2-2 libreadline6_6.2-2 libreadline6-dev_6.2-2 libselinux1_2.0.98-1.1 libsepol1_2.0.42-1 libslang2_2.2.4-2 libsm6_2:1.2.0-2 libss2_1.42~WIP-2011-07-02-1 libstdc++6_4.6.1-6 libstdc++6-4.6-dev_4.6.1-6 libthai-data_0.1.15-2 libthai0_0.1.15-2 libtiff4_3.9.5-1 libtimedate-perl_1.2000-1 libunistring0_0.9.3-4 libusb-0.1-4_2:0.1.12-18 libuuid1_2.19.1-5 libx11-6_2:1.4.4-1 libx11-data_2:1.4.4-1 libxau6_1:1.0.6-3 libxcb-render0_1.7-3 libxcb-shm0_1.7-3 libxcb1_1.7-3 libxdmcp6_1:1.1.0-3 libxext6_2:1.3.0-3 libxft2_2.2.0-3 libxml2_2.7.8.dfsg-4 libxrender1_1:0.9.6-2 libxss1_1:1.2.1-2 libxt6_1:1.1.1-2 linux-libc-dev_3.0.0-1 login_1:4.1.4.2+svn3283-3 lsb-base_3.2-27 make_3.81-8.1 man-db_2.6.0.2-2 mawk_1.3.3-15 mount_2.19.1-5 multiarch-support_2.13-16 ncurses-base_5.9-1 ncurses-bin_5.9-1 passwd_1:4.1.4.2+svn3283-3 patch_2.6.1-2 perl_5.12.4-2 perl-base_5.12.4-2 perl-modules_5.12.4-2 po-debconf_1.0.16+nmu1 r-base-core_2.13.1-1 r-base-dev_2.13.1-1 readline-common_6.2-2 sed_4.2.1-9 sensible-utils_0.0.6 sudo_1.7.4p6-1 sysv-rc_2.88dsf-13.11 sysvinit_2.88dsf-13.11 sysvinit-utils_2.88dsf-13.11 tar_1.25-3 tcl8.5_8.5.10-1 tk8.5_8.5.10-1 ttf-dejavu-core_2.33-1 tzdata_2011h-3 ucf_3.0025+nmu2 unzip_6.0-5 util-linux_2.19.1-5 x11-common_1:7.6+7 xdg-utils_1.1.0~rc1-2 xz-utils_5.0.0-2 zip_3.0-4 zlib1g_1:1.2.3.4.dfsg-3 zlib1g-dev_1:1.2.3.4.dfsg-3
┌──────────────────────────────────────────────────────────────────────────────┐
│ Build │
@@ -587,14 +544,13 @@ Package versions: apt_0.8.14.1 base-files_6.3 base-passwd_3.5.22 bash_4.1-3 binu
Unpack source
─────────────
-Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/Source/Package.pm line 258.
gpgv: keyblock resource `/home/buildd/.gnupg/trustedkeys.gpg': file open error
-gpgv: Signature made Thu Jun 2 04:18:41 2011 UTC using RSA key ID 2295D502
+gpgv: Signature made Sun Aug 14 11:36:35 2011 UTC using RSA key ID 2295D502
gpgv: Can't check signature: public key not found
-dpkg-source: warning: failed to verify signature on ./r-bioc-limma_3.8.2-1.dsc
-dpkg-source: info: extracting r-bioc-limma in r-bioc-limma-3.8.2
-dpkg-source: info: unpacking r-bioc-limma_3.8.2.orig.tar.gz
-dpkg-source: info: applying r-bioc-limma_3.8.2-1.diff.gz
+dpkg-source: warning: failed to verify signature on ./r-bioc-limma_3.8.3-1.dsc
+dpkg-source: info: extracting r-bioc-limma in r-bioc-limma-3.8.3
+dpkg-source: info: unpacking r-bioc-limma_3.8.3.orig.tar.gz
+dpkg-source: info: applying r-bioc-limma_3.8.3-1.diff.gz
Check disc space
────────────────
@@ -603,33 +559,24 @@ Check disc space
dpkg-buildpackage
─────────────────
-Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
dpkg-buildpackage: export CFLAGS from dpkg-buildflags (origin: vendor): -g -O2
dpkg-buildpackage: export CPPFLAGS from dpkg-buildflags (origin: vendor):
dpkg-buildpackage: export CXXFLAGS from dpkg-buildflags (origin: vendor): -g -O2
dpkg-buildpackage: export FFLAGS from dpkg-buildflags (origin: vendor): -g -O2
dpkg-buildpackage: export LDFLAGS from dpkg-buildflags (origin: vendor):
dpkg-buildpackage: source package r-bioc-limma
-dpkg-buildpackage: source version 3.8.2-1
- dpkg-source --before-build r-bioc-limma-3.8.2
+dpkg-buildpackage: source version 3.8.3-1
+ dpkg-source --before-build r-bioc-limma-3.8.3
dpkg-buildpackage: host architecture armel
fakeroot debian/rules clean
-Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
-Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
-Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
-Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
test -x debian/rules
dh_testroot
/usr/bin/make -f debian/rules reverse-config
-Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
-Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
-Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
-Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
-make[1]: Entering directory `/build/buildd-r-bioc-limma_3.8.2-1-armel-FFgeyW/r-bioc-limma-3.8.2'
+make[1]: Entering directory `/build/buildd-r-bioc-limma_3.8.3-1-armel-ETOuxh/r-bioc-limma-3.8.3'
make[1]: Nothing to be done for `reverse-config'.
-make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.8.2-1-armel-FFgeyW/r-bioc-limma-3.8.2'
+make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.8.3-1-armel-ETOuxh/r-bioc-limma-3.8.3'
if [ "reverse-patches" = "reverse-patches" ]; then rm -f debian/stamp-patched; fi
patches:
if [ "reverse-patches" != "reverse-patches" ]; then touch debian/stamp-patched; fi
@@ -646,41 +593,25 @@ if test -d src; then \
fi
rm -f config.log config.status
debian/rules build
-Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
-Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
-Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
-Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
test -x debian/rules
mkdir -p "."
/usr/bin/make -f debian/rules reverse-config
-Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
-Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
-Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
-Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
-make[1]: Entering directory `/build/buildd-r-bioc-limma_3.8.2-1-armel-FFgeyW/r-bioc-limma-3.8.2'
+make[1]: Entering directory `/build/buildd-r-bioc-limma_3.8.3-1-armel-ETOuxh/r-bioc-limma-3.8.3'
make[1]: Nothing to be done for `reverse-config'.
-make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.8.2-1-armel-FFgeyW/r-bioc-limma-3.8.2'
+make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.8.3-1-armel-ETOuxh/r-bioc-limma-3.8.3'
if [ "debian/stamp-patched" = "reverse-patches" ]; then rm -f debian/stamp-patched; fi
patches:
if [ "debian/stamp-patched" != "reverse-patches" ]; then touch debian/stamp-patched; fi
if [ "debian/stamp-patched" != "reverse-patches" ] ; then \
/usr/bin/make -f debian/rules update-config ; \
fi
-Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
-Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
-Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
-Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
-make[1]: Entering directory `/build/buildd-r-bioc-limma_3.8.2-1-armel-FFgeyW/r-bioc-limma-3.8.2'
+make[1]: Entering directory `/build/buildd-r-bioc-limma_3.8.3-1-armel-ETOuxh/r-bioc-limma-3.8.3'
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
make[1]: Nothing to be done for `update-config'.
fakeroot debian/rules binary-arch
-make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.8.2-1-armel-FFgeyW/r-bioc-limma-3.8.2'
-Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
-Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
-Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
-Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.8.3-1-armel-ETOuxh/r-bioc-limma-3.8.3'
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
test -x debian/rules
dh_testroot
@@ -689,24 +620,24 @@ dh_installdirs -A
mkdir -p "."
dh_installdirs usr/lib/R/site-library
if test -f /usr/bin/xvfb-run; then \
- xvfb-run \
- R CMD INSTALL -l /build/buildd-r-bioc-limma_3.8.2-1-armel-FFgeyW/r-bioc-limma-3.8.2/debian/r-bioc-limma/usr/lib/R/site-library --clean \
+ xvfb-run -a \
+ R CMD INSTALL -l /build/buildd-r-bioc-limma_3.8.3-1-armel-ETOuxh/r-bioc-limma-3.8.3/debian/r-bioc-limma/usr/lib/R/site-library --clean \
. ; \
else \
- R CMD INSTALL -l /build/buildd-r-bioc-limma_3.8.2-1-armel-FFgeyW/r-bioc-limma-3.8.2/debian/r-bioc-limma/usr/lib/R/site-library \
+ R CMD INSTALL -l /build/buildd-r-bioc-limma_3.8.3-1-armel-ETOuxh/r-bioc-limma-3.8.3/debian/r-bioc-limma/usr/lib/R/site-library \
--clean . ;\
fi
* installing *source* package 'limma' ...
** libs
-make[1]: Entering directory `/build/buildd-r-bioc-limma_3.8.2-1-armel-FFgeyW/r-bioc-limma-3.8.2/src'
+make[1]: Entering directory `/build/buildd-r-bioc-limma_3.8.3-1-armel-ETOuxh/r-bioc-limma-3.8.3/src'
gcc -I/usr/share/R/include -fpic -std=gnu99 -O3 -pipe -g -c normexp.c -o normexp.o
normexp.c: In function 'fit_saddle_nelder_mead':
normexp.c:153:3: warning: floating constant exceeds range of 'double' [-Woverflow]
gcc -shared -o limma.so normexp.o -L/usr/lib/R/lib -lR
-make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.8.2-1-armel-FFgeyW/r-bioc-limma-3.8.2/src'
-make[1]: Entering directory `/build/buildd-r-bioc-limma_3.8.2-1-armel-FFgeyW/r-bioc-limma-3.8.2/src'
-make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.8.2-1-armel-FFgeyW/r-bioc-limma-3.8.2/src'
-installing to /build/buildd-r-bioc-limma_3.8.2-1-armel-FFgeyW/r-bioc-limma-3.8.2/debian/r-bioc-limma/usr/lib/R/site-library/limma/libs
+make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.8.3-1-armel-ETOuxh/r-bioc-limma-3.8.3/src'
+make[1]: Entering directory `/build/buildd-r-bioc-limma_3.8.3-1-armel-ETOuxh/r-bioc-limma-3.8.3/src'
+make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.8.3-1-armel-ETOuxh/r-bioc-limma-3.8.3/src'
+installing to /build/buildd-r-bioc-limma_3.8.3-1-armel-ETOuxh/r-bioc-limma-3.8.3/debian/r-bioc-limma/usr/lib/R/site-library/limma/libs
** R
** inst
** preparing package for lazy loading
@@ -716,17 +647,17 @@ installing to /build/buildd-r-bioc-limma_3.8.2-1-armel-FFgeyW/r-bioc-limma-3.8.2
** testing if installed package can be loaded
* DONE (limma)
-rm -vf /build/buildd-r-bioc-limma_3.8.2-1-armel-FFgeyW/r-bioc-limma-3.8.2/debian/r-bioc-limma/usr/lib/R/site-library/R.css \
- /build/buildd-r-bioc-limma_3.8.2-1-armel-FFgeyW/r-bioc-limma-3.8.2/debian/r-bioc-limma/usr/lib/R/site-library/limma/COPYING \
- /build/buildd-r-bioc-limma_3.8.2-1-armel-FFgeyW/r-bioc-limma-3.8.2/debian/r-bioc-limma/usr/lib/R/site-library/limma/LICENSE.txt
+rm -vf /build/buildd-r-bioc-limma_3.8.3-1-armel-ETOuxh/r-bioc-limma-3.8.3/debian/r-bioc-limma/usr/lib/R/site-library/R.css \
+ /build/buildd-r-bioc-limma_3.8.3-1-armel-ETOuxh/r-bioc-limma-3.8.3/debian/r-bioc-limma/usr/lib/R/site-library/limma/COPYING \
+ /build/buildd-r-bioc-limma_3.8.3-1-armel-ETOuxh/r-bioc-limma-3.8.3/debian/r-bioc-limma/usr/lib/R/site-library/limma/LICENSE.txt
if test -f debian/overrides; then \
- install -d /build/buildd-r-bioc-limma_3.8.2-1-armel-FFgeyW/r-bioc-limma-3.8.2/debian/r-bioc-limma/usr/share/lintian/overrides ; \
+ install -d /build/buildd-r-bioc-limma_3.8.3-1-armel-ETOuxh/r-bioc-limma-3.8.3/debian/r-bioc-limma/usr/share/lintian/overrides ; \
install -m 0644 debian/overrides \
- /build/buildd-r-bioc-limma_3.8.2-1-armel-FFgeyW/r-bioc-limma-3.8.2/debian/r-bioc-limma/usr/share/lintian/overrides/r-bioc-limma; \
+ /build/buildd-r-bioc-limma_3.8.3-1-armel-ETOuxh/r-bioc-limma-3.8.3/debian/r-bioc-limma/usr/share/lintian/overrides/r-bioc-limma; \
fi
Adding cdbs dependencies to debian/r-bioc-limma.substvars
dh_installdirs -pr-bioc-limma
-echo "R:Depends=r-base-core (>= 2.13.0~)" >> debian/r-bioc-limma.substvars
+echo "R:Depends=r-base-core (>= 2.13.1~)" >> debian/r-bioc-limma.substvars
dh_installdocs -pr-bioc-limma
dh_installexamples -pr-bioc-limma
dh_installman -pr-bioc-limma
@@ -758,58 +689,58 @@ dh_shlibdeps -pr-bioc-limma
dh_gencontrol -pr-bioc-limma
dh_md5sums -pr-bioc-limma
dh_builddeb -pr-bioc-limma
-dpkg-deb: building package `r-bioc-limma' in `../r-bioc-limma_3.8.2-1_armel.deb'.
- dpkg-genchanges -B -marmel Build Daemon (antheil) <buildd_armel-antheil at buildd.debian.org> >../r-bioc-limma_3.8.2-1_armel.changes
+dpkg-deb: building package `r-bioc-limma' in `../r-bioc-limma_3.8.3-1_armel.deb'.
+ dpkg-genchanges -B -marmel Build Daemon (alwyn) <buildd_armel-alwyn at buildd.debian.org> >../r-bioc-limma_3.8.3-1_armel.changes
dpkg-genchanges: arch-specific upload - not including arch-independent packages
dpkg-genchanges: binary-only upload - not including any source code
- dpkg-source --after-build r-bioc-limma-3.8.2
+ dpkg-source --after-build r-bioc-limma-3.8.3
dpkg-buildpackage: binary only upload (no source included)
────────────────────────────────────────────────────────────────────────────────
-Build finished at 20110602-1554
+Build finished at 20110814-1222
-r-bioc-limma_3.8.2-1_armel.changes:
+r-bioc-limma_3.8.3-1_armel.changes:
Format: 1.8
-Date: Thu, 02 Jun 2011 13:07:58 +0900
+Date: Sun, 14 Aug 2011 20:30:21 +0900
Source: r-bioc-limma
Binary: r-bioc-limma
Architecture: armel
-Version: 3.8.2-1
+Version: 3.8.3-1
Distribution: sid
Urgency: low
-Maintainer: armel Build Daemon (antheil) <buildd_armel-antheil at buildd.debian.org>
+Maintainer: armel Build Daemon (alwyn) <buildd_armel-alwyn at buildd.debian.org>
Changed-By: Charles Plessy <plessy at debian.org>
Description:
r-bioc-limma - linear models for microarray data
-Closes: 628548
Changes:
- r-bioc-limma (3.8.2-1) unstable; urgency=low
+ r-bioc-limma (3.8.3-1) unstable; urgency=low
.
- * Initial release (closes: #628548).
+ * New upstream release.
+ * [e891bb6b] Corrected VCS-Git url.
Checksums-Sha1:
- 8cd3fb1ae4594eea38224cdabf4c77da6b61bd27 1399796 r-bioc-limma_3.8.2-1_armel.deb
+ 1c3a4f113117f2706940bcd5281b15efb4a6346b 1401670 r-bioc-limma_3.8.3-1_armel.deb
Checksums-Sha256:
- 1f89b4c87efc92812cee7102ceae8f50c2dae26f220bbeeba881b310f418a869 1399796 r-bioc-limma_3.8.2-1_armel.deb
+ f7a3f22e89906d5ed32ad51dbacadb014e5408d500614ca0ddf378ff19eaa402 1401670 r-bioc-limma_3.8.3-1_armel.deb
Files:
- 6c78af221c2bd98b5e57b7f6b739ccfc 1399796 gnu-r optional r-bioc-limma_3.8.2-1_armel.deb
+ 6a5685daab2b533418b9158bf52f8fea 1401670 gnu-r optional r-bioc-limma_3.8.3-1_armel.deb
┌──────────────────────────────────────────────────────────────────────────────┐
│ Package contents │
└──────────────────────────────────────────────────────────────────────────────┘
-r-bioc-limma_3.8.2-1_armel.deb
+r-bioc-limma_3.8.3-1_armel.deb
──────────────────────────────
new debian package, version 2.0.
- size 1399796 bytes: control archive= 1509 bytes.
+ size 1401670 bytes: control archive= 1515 bytes.
767 bytes, 16 lines control
2226 bytes, 29 lines md5sums
Package: r-bioc-limma
- Version: 3.8.2-1
+ Version: 3.8.3-1
Architecture: armel
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
Installed-Size: 1680
- Depends: libc6 (>= 2.4), r-base-core (>= 2.13.0~)
+ Depends: libc6 (>= 2.4), r-base-core (>= 2.13.1~)
Section: gnu-r
Priority: optional
Homepage: http://bioinf.wehi.edu.au/limma/
@@ -821,50 +752,50 @@ r-bioc-limma_3.8.2-1_armel.deb
apply to all array platforms and treat Affymetrix, single channel and two
channel experiments in a unified way.
-drwxr-xr-x root/root 0 2011-06-02 15:54 ./
-drwxr-xr-x root/root 0 2011-06-02 15:54 ./usr/
-drwxr-xr-x root/root 0 2011-06-02 15:54 ./usr/share/
-drwxr-xr-x root/root 0 2011-06-02 15:54 ./usr/share/doc/
-drwxr-xr-x root/root 0 2011-06-02 15:54 ./usr/share/doc/r-bioc-limma/
--rw-r--r-- root/root 25983 2011-05-20 04:14 ./usr/share/doc/r-bioc-limma/changelog.gz
--rw-r--r-- root/root 161 2011-06-02 15:52 ./usr/share/doc/r-bioc-limma/changelog.Debian.gz
--rw-r--r-- root/root 2116 2011-06-02 15:52 ./usr/share/doc/r-bioc-limma/copyright
-drwxr-xr-x root/root 0 2011-06-02 15:53 ./usr/lib/
-drwxr-xr-x root/root 0 2011-06-02 15:53 ./usr/lib/R/
-drwxr-xr-x root/root 0 2011-06-02 15:54 ./usr/lib/R/site-library/
-drwxr-xr-x root/root 0 2011-06-02 15:54 ./usr/lib/R/site-library/limma/
-drwxr-xr-x root/root 0 2011-06-02 15:53 ./usr/lib/R/site-library/limma/help/
--rw-r--r-- root/root 1342 2011-06-02 15:53 ./usr/lib/R/site-library/limma/help/paths.rds
--rw-r--r-- root/root 3249 2011-06-02 15:53 ./usr/lib/R/site-library/limma/help/limma.rdx
--rw-r--r-- root/root 6150 2011-06-02 15:53 ./usr/lib/R/site-library/limma/help/AnIndex
--rw-r--r-- root/root 2361 2011-06-02 15:53 ./usr/lib/R/site-library/limma/help/aliases.rds
--rw-r--r-- root/root 449794 2011-06-02 15:53 ./usr/lib/R/site-library/limma/help/limma.rdb
--rw-r--r-- root/root 1011 2011-06-02 15:53 ./usr/lib/R/site-library/limma/DESCRIPTION
--rw-r--r-- root/root 9360 2011-06-02 15:54 ./usr/lib/R/site-library/limma/INDEX
-drwxr-xr-x root/root 0 2011-06-02 15:53 ./usr/lib/R/site-library/limma/html/
--rw-r--r-- root/root 34039 2011-06-02 15:53 ./usr/lib/R/site-library/limma/html/00Index.html
--rw-r--r-- root/root 1179 2011-06-02 15:53 ./usr/lib/R/site-library/limma/html/R.css
-drwxr-xr-x root/root 0 2011-06-02 15:54 ./usr/lib/R/site-library/limma/Meta/
--rw-r--r-- root/root 5946 2011-06-02 15:54 ./usr/lib/R/site-library/limma/Meta/Rd.rds
--rw-r--r-- root/root 1054 2011-06-02 15:53 ./usr/lib/R/site-library/limma/Meta/package.rds
--rw-r--r-- root/root 2853 2011-06-02 15:54 ./usr/lib/R/site-library/limma/Meta/links.rds
--rw-r--r-- root/root 5522 2011-06-02 15:54 ./usr/lib/R/site-library/limma/Meta/hsearch.rds
--rw-r--r-- root/root 217 2011-06-02 15:54 ./usr/lib/R/site-library/limma/Meta/vignette.rds
--rw-r--r-- root/root 503 2011-06-02 15:54 ./usr/lib/R/site-library/limma/Meta/nsInfo.rds
-drwxr-xr-x root/root 0 2011-06-02 15:54 ./usr/lib/R/site-library/limma/doc/
--rwxr-xr-x root/root 673 2011-06-02 15:53 ./usr/lib/R/site-library/limma/doc/index.html
--rw-r--r-- root/root 687780 2011-06-02 15:53 ./usr/lib/R/site-library/limma/doc/usersguide.pdf
--rwxr-xr-x root/root 84633 2011-06-02 15:53 ./usr/lib/R/site-library/limma/doc/changelog.txt
--rwxr-xr-x root/root 1711 2011-06-02 15:53 ./usr/lib/R/site-library/limma/doc/limma.Rnw
--rw-r--r-- root/root 45616 2011-06-02 15:53 ./usr/lib/R/site-library/limma/doc/limma.pdf
--rwxr-xr-x root/root 1230 2011-06-02 15:53 ./usr/lib/R/site-library/limma/CITATION
-drwxr-xr-x root/root 0 2011-06-02 15:53 ./usr/lib/R/site-library/limma/R/
--rw-r--r-- root/root 384 2011-06-02 15:53 ./usr/lib/R/site-library/limma/R/limma
--rw-r--r-- root/root 3735 2011-06-02 15:53 ./usr/lib/R/site-library/limma/R/limma.rdx
--rw-r--r-- root/root 172730 2011-06-02 15:53 ./usr/lib/R/site-library/limma/R/limma.rdb
--rw-r--r-- root/root 1872 2011-06-02 15:53 ./usr/lib/R/site-library/limma/NAMESPACE
-drwxr-xr-x root/root 0 2011-06-02 15:54 ./usr/lib/R/site-library/limma/libs/
--rw-r--r-- root/root 13848 2011-06-02 15:54 ./usr/lib/R/site-library/limma/libs/limma.so
+drwxr-xr-x root/root 0 2011-08-14 12:22 ./
+drwxr-xr-x root/root 0 2011-08-14 12:22 ./usr/
+drwxr-xr-x root/root 0 2011-08-14 12:21 ./usr/lib/
+drwxr-xr-x root/root 0 2011-08-14 12:21 ./usr/lib/R/
+drwxr-xr-x root/root 0 2011-08-14 12:22 ./usr/lib/R/site-library/
+drwxr-xr-x root/root 0 2011-08-14 12:22 ./usr/lib/R/site-library/limma/
+drwxr-xr-x root/root 0 2011-08-14 12:22 ./usr/lib/R/site-library/limma/libs/
+-rw-r--r-- root/root 13848 2011-08-14 12:22 ./usr/lib/R/site-library/limma/libs/limma.so
+drwxr-xr-x root/root 0 2011-08-14 12:21 ./usr/lib/R/site-library/limma/help/
+-rw-r--r-- root/root 449996 2011-08-14 12:21 ./usr/lib/R/site-library/limma/help/limma.rdb
+-rw-r--r-- root/root 6150 2011-08-14 12:21 ./usr/lib/R/site-library/limma/help/AnIndex
+-rw-r--r-- root/root 3255 2011-08-14 12:21 ./usr/lib/R/site-library/limma/help/limma.rdx
+-rw-r--r-- root/root 2363 2011-08-14 12:21 ./usr/lib/R/site-library/limma/help/aliases.rds
+-rw-r--r-- root/root 1344 2011-08-14 12:21 ./usr/lib/R/site-library/limma/help/paths.rds
+drwxr-xr-x root/root 0 2011-08-14 12:22 ./usr/lib/R/site-library/limma/doc/
+-rwxr-xr-x root/root 673 2011-08-14 12:21 ./usr/lib/R/site-library/limma/doc/index.html
+-rw-r--r-- root/root 687780 2011-08-14 12:21 ./usr/lib/R/site-library/limma/doc/usersguide.pdf
+-rwxr-xr-x root/root 1711 2011-08-14 12:21 ./usr/lib/R/site-library/limma/doc/limma.Rnw
+-rwxr-xr-x root/root 84899 2011-08-14 12:21 ./usr/lib/R/site-library/limma/doc/changelog.txt
+-rw-r--r-- root/root 45616 2011-08-14 12:21 ./usr/lib/R/site-library/limma/doc/limma.pdf
+drwxr-xr-x root/root 0 2011-08-14 12:21 ./usr/lib/R/site-library/limma/R/
+-rw-r--r-- root/root 384 2011-08-14 12:21 ./usr/lib/R/site-library/limma/R/limma
+-rw-r--r-- root/root 173274 2011-08-14 12:21 ./usr/lib/R/site-library/limma/R/limma.rdb
+-rw-r--r-- root/root 3749 2011-08-14 12:21 ./usr/lib/R/site-library/limma/R/limma.rdx
+-rwxr-xr-x root/root 1230 2011-08-14 12:21 ./usr/lib/R/site-library/limma/CITATION
+drwxr-xr-x root/root 0 2011-08-14 12:22 ./usr/lib/R/site-library/limma/Meta/
+-rw-r--r-- root/root 5947 2011-08-14 12:22 ./usr/lib/R/site-library/limma/Meta/Rd.rds
+-rw-r--r-- root/root 505 2011-08-14 12:22 ./usr/lib/R/site-library/limma/Meta/nsInfo.rds
+-rw-r--r-- root/root 1056 2011-08-14 12:21 ./usr/lib/R/site-library/limma/Meta/package.rds
+-rw-r--r-- root/root 5524 2011-08-14 12:22 ./usr/lib/R/site-library/limma/Meta/hsearch.rds
+-rw-r--r-- root/root 217 2011-08-14 12:22 ./usr/lib/R/site-library/limma/Meta/vignette.rds
+-rw-r--r-- root/root 2854 2011-08-14 12:22 ./usr/lib/R/site-library/limma/Meta/links.rds
+drwxr-xr-x root/root 0 2011-08-14 12:21 ./usr/lib/R/site-library/limma/html/
+-rw-r--r-- root/root 34039 2011-08-14 12:21 ./usr/lib/R/site-library/limma/html/00Index.html
+-rw-r--r-- root/root 1179 2011-08-14 12:21 ./usr/lib/R/site-library/limma/html/R.css
+-rw-r--r-- root/root 1872 2011-08-14 12:21 ./usr/lib/R/site-library/limma/NAMESPACE
+-rw-r--r-- root/root 9360 2011-08-14 12:22 ./usr/lib/R/site-library/limma/INDEX
+-rw-r--r-- root/root 1011 2011-08-14 12:21 ./usr/lib/R/site-library/limma/DESCRIPTION
+drwxr-xr-x root/root 0 2011-08-14 12:22 ./usr/share/
+drwxr-xr-x root/root 0 2011-08-14 12:22 ./usr/share/doc/
+drwxr-xr-x root/root 0 2011-08-14 12:22 ./usr/share/doc/r-bioc-limma/
+-rw-r--r-- root/root 234 2011-08-14 12:20 ./usr/share/doc/r-bioc-limma/changelog.Debian.gz
+-rw-r--r-- root/root 26050 2011-08-08 16:14 ./usr/share/doc/r-bioc-limma/changelog.gz
+-rw-r--r-- root/root 2117 2011-08-14 12:20 ./usr/share/doc/r-bioc-limma/copyright
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -878,7 +809,7 @@ Built successfully
│ Post Build │
└──────────────────────────────────────────────────────────────────────────────┘
-Purging /var/lib/schroot/mount/sid-armel-sbuild-0b4fe5cf-4dba-4da4-b2a9-71961bf7b013/build/buildd-r-bioc-limma_3.8.2-1-armel-FFgeyW
+Purging /var/lib/schroot/mount/sid-armel-sbuild-e28c0535-9ca6-43f9-8ae3-e353fa42074c/build/buildd-r-bioc-limma_3.8.3-1-armel-ETOuxh
Not cleaning session: cloned chroot in use
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -886,19 +817,19 @@ Not cleaning session: cloned chroot in use
└──────────────────────────────────────────────────────────────────────────────┘
Architecture: armel
-Build-Space: 5084
-Build-Time: 125
+Build-Space: 5088
+Build-Time: 114
Distribution: sid
-Install-Time: 304
-Job: r-bioc-limma_3.8.2-1
+Install-Time: 266
+Job: r-bioc-limma_3.8.3-1
Package: r-bioc-limma
-Package-Time: 521
-Source-Version: 3.8.2-1
-Space: 5084
+Package-Time: 483
+Source-Version: 3.8.3-1
+Space: 5088
Status: successful
-Version: 3.8.2-1
+Version: 3.8.3-1
────────────────────────────────────────────────────────────────────────────────
-Finished at 20110602-1554
-Build needed 00:08:41, 5084k disc space
-Signature with key '5C622921' requested:
+Finished at 20110814-1222
+Build needed 00:08:03, 5088k disc space
+Signature with key 'BC8BBB6D' requested:
diff --git a/hurd-i386.log b/hurd-i386.log
index 7682d3d..4137140 100644
--- a/hurd-i386.log
+++ b/hurd-i386.log
@@ -1,65 +1,148 @@
-From buildd at rossini.debian.net Fri Jun 03 11:35:02 2011
-Return-path: <buildd at rossini.debian.net>
-Received: from io.ethz.ch ([129.132.80.17] helo=io.debian.net)
+From buildd at bach.debian.net Tue Aug 16 08:42:48 2011
+Return-path: <buildd at bach.debian.net>
+Received: from callisto.debian.net ([80.87.129.151])
by grieg.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
- (Exim 4.72) (envelope-from <buildd at rossini.debian.net>)
- id 1QSSea-0001w2-TQ
- for logs at buildd.debian.org; Fri, 03 Jun 2011 11:35:02 +0000
-Received: from hurd.ethz.ch ([192.33.98.55] helo=rossini.debian.net)
- by io.debian.net with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
- (Exim 4.72) (envelope-from <buildd at rossini.debian.net>)
- id 1QSSeY-000Coe-F7; Fri, 03 Jun 2011 13:34:58 +0200
-Received: from buildd by rossini.debian.net with local (Exim 4.72)
- (envelope-from <buildd at rossini.debian.net>)
- id 1QSSeT-0002In-52; Fri, 03 Jun 2011 11:34:53 +0000
-Date: Fri, 03 Jun 2011 11:34:53 +0000
-Message-Id: <E1QSSeT-0002In-52 at rossini.debian.net>
-From: Build Daemon <buildd at rossini.debian.net>
+ (Exim 4.72) (envelope-from <buildd at bach.debian.net>)
+ id 1QtFEV-0003ck-4m
+ for logs at buildd.debian.org; Tue, 16 Aug 2011 08:42:48 +0000
+Received: from bach.debian.net ([10.3.0.1])
+ by callisto.debian.net with esmtp (Exim 4.69)
+ (envelope-from <buildd at bach.debian.net>)
+ id 1QtFES-0001JY-NZ; Tue, 16 Aug 2011 09:42:44 +0100
+Received: from buildd by bach.debian.net with local (Exim 4.72)
+ (envelope-from <buildd at bach.debian.net>)
+ id 1QtFEX-0002pB-V4; Tue, 16 Aug 2011 08:42:50 +0000
+Message-Id: <E1QtFEX-0002pB-V4 at bach.debian.net>
+MIME-Version: 1.0
+Content-Transfer-Encoding: binary
+X-Mailer: MIME::Lite 3.027 (F2.78; A2.07; B3.08; Q3.08)
+Date: Tue, 16 Aug 2011 08:42:49 +0000
+From: Build Daemon <buildd at bach.debian.net>
To: samuel.thibault at labri.fr, mbanck at gmx.net, logs at buildd.debian-ports.org,
logs at buildd.debian.org, debian-hurd-build-logs at lists.alioth.debian.org
-Subject: Log for successful build of r-bioc-limma_3.8.2-1 on hurd-i386
+Subject: Log for successful build of r-bioc-limma_3.8.3-1 on hurd-i386
(dist=sid)
-Content-Type: text/plain; charset=UTF-8
-Content-Transfer-Encoding: 8bit
Delivered-To: logs at buildd.debian.org
-sbuild (Debian sbuild) 0.60.0 (23 Feb 2010) on rossini.debian.net
+sbuild (Debian sbuild) 0.62.3 (11 Jun 2011) on bach.debian.net
╔══════════════════════════════════════════════════════════════════════════════╗
-║ r-bioc-limma 3.8.2-1 (hurd-i386) 03 Jun 2011 11:09 ║
+║ r-bioc-limma 3.8.3-1 (hurd-i386) 16 août 2011 08:31 ║
╚══════════════════════════════════════════════════════════════════════════════╝
Package: r-bioc-limma
-Version: 3.8.2-1
+Version: 3.8.3-1
+Source Version: 3.8.3-1
+Distribution: sid
Architecture: hurd-i386
-Chroot Build Dir: /home/buildd/build/chroot-sid/build/buildd-r-bioc-limma_3.8.2-1-hurd-i386-FytMjw
-Start Time: 20110603-1109
-Ign file: ./ InRelease
-Ign file: ./ Release.gpg
-Ign file: ./ Release
-Ign file: ./ Translation-en
-Hit http://ftp.ch.debian.org unstable InRelease
-Hit http://ftp.ch.debian.org experimental InRelease
+
+I: NOTICE: Log filtering will replace 'build/r-bioc-limma-YP33Su/r-bioc-limma-3.8.3' with '«PKGBUILDDIR»'
+I: NOTICE: Log filtering will replace 'build/r-bioc-limma-YP33Su' with '«BUILDDIR»'
+I: NOTICE: Log filtering will replace 'home/buildd/build/chroot-sid' with '«CHROOT»'
+W: Stripped single quote from command for security:
+ use strict;
+ use warnings;
+ use POSIX;
+ use FileHandle;
+
+ my $lockfile="/var/lock/sbuild";
+ my $try = 0;
+
+ repeat:
+ if (!sysopen( F, $lockfile, O_WRONLY|O_CREAT|O_TRUNC|O_EXCL, 0644 )){
+ if ($! == EEXIST) {
+ # lock file exists, wait
+ goto repeat if !open( F, "<$lockfile" );
+ my $line = <F>;
+ my ($job, $pid, $user);
+ close( F );
+ if ($line !~ /^(\S+)\s+(\S+)\s+(\S+)/) {
+ print STDERR "Bad lock file contents ($lockfile) -- still trying\n";
+ } else {
+ ($job, $pid, $user) = ($1, $2, $3);
+ if (kill( 0, $pid ) == 0 && $! == ESRCH) {
+ # process doesn't exist anymore, remove stale lock
+ print STDERR "Removing stale lock file $lockfile ".
+ "(job $job, pid $pid, user $user)\n";
+ if (!unlink($lockfile)) {
+ if ($! != ENOENT) {
+ print STDERR "Cannot remove chroot lock file $lockfile: $!\n";
+ exit 1;
+ }
+ }
+ }
+ }
+ ++$try;
+ if ($try > 120) {
+ print STDERR "Lockfile $lockfile still present after " .
+ 120 * 5 . " seconds -- giving up\n";
+ exit 1;
+ }
+ print STDERR "Another sbuild process (job $job, pid $pid by user $user) is currently using the build chroot; waiting...\n"
+ if $try == 1;
+ sleep 5;
+ goto repeat;
+ } else {
+ print STDERR "Can't create lock file $lockfile: $!\n";
+ exit 1;
+ }
+ }
+
+ F->print("r-bioc-limma_3.8.3-1 8530 buildd\n");
+ F->close();
+
+ exit 0;
+
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Update chroot │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+Hit http://ftp.uk.debian.org sid InRelease
+Hit http://ftp.fr.debian.org sid InRelease
+Ign http://incoming.debian.org InRelease
Ign http://ftp.debian-ports.org unreleased InRelease
-Hit http://ftp.ch.debian.org unstable/main Sources/DiffIndex
+Get:1 http://incoming.debian.org Release.gpg [836 B]
+Hit http://ftp.uk.debian.org sid/main Sources/DiffIndex
Hit http://ftp.debian-ports.org unreleased Release.gpg
-Ign http://incoming.debian.org InRelease
-Hit http://ftp.ch.debian.org unstable/contrib Sources/DiffIndex
-Hit http://ftp.ch.debian.org unstable/non-free Sources/DiffIndex
-Hit http://ftp.ch.debian.org unstable/main hurd-i386 Packages/DiffIndex
-Hit http://ftp.ch.debian.org unstable/main TranslationIndex
-Hit http://ftp.ch.debian.org experimental/main Sources/DiffIndex
-Hit http://ftp.ch.debian.org experimental/contrib Sources/DiffIndex
-Hit http://ftp.ch.debian.org experimental/non-free Sources/DiffIndex
+Hit http://ftp.uk.debian.org sid/contrib Sources/DiffIndex
+Hit http://ftp.uk.debian.org sid/non-free Sources/DiffIndex
+Hit http://ftp.uk.debian.org sid/main hurd-i386 Packages/DiffIndex
+Hit http://ftp.fr.debian.org sid/main Sources/DiffIndex
Hit http://ftp.debian-ports.org unreleased Release
-Hit http://incoming.debian.org Release.gpg
-Hit http://incoming.debian.org Release
+Hit http://ftp.uk.debian.org sid/contrib hurd-i386 Packages/DiffIndex
+Hit http://ftp.uk.debian.org sid/non-free hurd-i386 Packages/DiffIndex
+Ign http://ftp.uk.debian.org sid/contrib TranslationIndex
+Hit http://ftp.uk.debian.org sid/main TranslationIndex
+Ign http://ftp.uk.debian.org sid/non-free TranslationIndex
+Get:2 http://incoming.debian.org Release [1604 B]
+Hit http://ftp.uk.debian.org sid/main Translation-fr
+Hit http://ftp.fr.debian.org sid/contrib Sources/DiffIndex
+Hit http://ftp.fr.debian.org sid/non-free Sources/DiffIndex
+Hit http://ftp.fr.debian.org sid/main hurd-i386 Packages/DiffIndex
+Hit http://ftp.fr.debian.org sid/contrib hurd-i386 Packages/DiffIndex
Hit http://ftp.debian-ports.org unreleased/main hurd-i386 Packages
Hit http://incoming.debian.org Sources
-Ign http://ftp.debian-ports.org unreleased/main TranslationIndex
+Hit http://ftp.fr.debian.org sid/non-free hurd-i386 Packages/DiffIndex
+Ign http://ftp.fr.debian.org sid/contrib TranslationIndex
+Hit http://ftp.fr.debian.org sid/main TranslationIndex
+Ign http://ftp.fr.debian.org sid/non-free TranslationIndex
+Ign http://ftp.uk.debian.org sid/contrib Translation-en
+Ign http://ftp.uk.debian.org sid/contrib Translation-fr
+Ign http://ftp.uk.debian.org sid/non-free Translation-en
+Ign http://ftp.uk.debian.org sid/non-free Translation-fr
Hit http://incoming.debian.org Packages
+Hit http://ftp.fr.debian.org sid/main Translation-fr
+Ign http://ftp.debian-ports.org unreleased/main TranslationIndex
Ign http://incoming.debian.org Translation-en
+Ign http://ftp.fr.debian.org sid/contrib Translation-en
+Ign http://incoming.debian.org Translation-fr
+Ign http://ftp.fr.debian.org sid/contrib Translation-fr
+Ign http://ftp.fr.debian.org sid/non-free Translation-en
+Ign http://ftp.fr.debian.org sid/non-free Translation-fr
Ign http://ftp.debian-ports.org unreleased/main Translation-en
+Ign http://ftp.debian-ports.org unreleased/main Translation-fr
+Fetched 2440 B in 1min 42s (24 B/s)
Reading package lists...
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -79,312 +162,280 @@ Reading package lists...
Building dependency tree...
Reading state information...
NOTICE: 'r-bioc-limma' packaging is maintained in the 'Git' version control system at:
-git://anonscm.debian.org/debian-med/r-bioc-limma.git
+git://git.debian.org/git/debian-med/r-bioc-limma.git
Need to get 921 kB of source archives.
-Get:1 http://ftp.ch.debian.org/debian/ unstable/main r-bioc-limma 3.8.2-1 (dsc) [1931 B]
-Get:2 http://ftp.ch.debian.org/debian/ unstable/main r-bioc-limma 3.8.2-1 (tar) [917 kB]
-Get:3 http://ftp.ch.debian.org/debian/ unstable/main r-bioc-limma 3.8.2-1 (diff) [2158 B]
-Fetched 921 kB in 0s (938 kB/s)
+Get:1 http://ftp.uk.debian.org/debian/ sid/main r-bioc-limma 3.8.3-1 (dsc) [1931 B]
+Get:2 http://ftp.uk.debian.org/debian/ sid/main r-bioc-limma 3.8.3-1 (tar) [917 kB]
+Get:3 http://ftp.uk.debian.org/debian/ sid/main r-bioc-limma 3.8.3-1 (diff) [2212 B]
+Fetched 921 kB in 1s (538 kB/s)
Download complete and in download only mode
Check arch
──────────
-** Using build dependencies supplied by package:
-Build-Depends: debhelper (>= 8), cdbs, r-base-dev (>= 2.10.0)
+Merged Build-Depends: build-essential, fakeroot
+Filtered Build-Depends: build-essential, fakeroot
+dpkg-deb: building package `sbuild-build-depends-core-dummy' in `/«BUILDDIR»/resolver-EUbGrL/apt_archive/sbuild-build-depends-core-dummy.deb'.
+gpg: WARNING: using insecure memory!
+gpg: please see http://www.gnupg.org/faq.html for more information
+OK
+Reading package lists...
┌──────────────────────────────────────────────────────────────────────────────┐
-│ Install build dependencies (internal resolver) │
+│ Install core build dependencies (apt-based resolver) │
└──────────────────────────────────────────────────────────────────────────────┘
-Checking for already installed source dependencies...
-debhelper: missing
-Using default version 8.1.6
-cdbs: missing
-r-base-dev: missing
-Using default version 2.13.0-2
-Checking for source dependency conflicts...
-Installing positive dependencies: debhelper cdbs r-base-dev
+Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
-The following package was automatically installed and is no longer required:
- libboost-iostreams1.42.0
+The following packages were automatically installed and are no longer required:
+ cron adduser libsysfs2 libusb-0.1-4p
+Use 'apt-get autoremove' to remove them.
+The following NEW packages will be installed:
+ sbuild-build-depends-core-dummy
+0 upgraded, 1 newly installed, 0 to remove and 39 not upgraded.
+Need to get 0 B/716 B of archives.
+After this operation, 0 B of additional disk space will be used.
+WARNING: The following packages cannot be authenticated!
+ sbuild-build-depends-core-dummy
+Authentication warning overridden.
+Selecting previously deselected package sbuild-build-depends-core-dummy.
+(Reading database ... 14643 files and directories currently installed.)
+Unpacking sbuild-build-depends-core-dummy (from .../sbuild-build-depends-core-dummy.deb) ...
+Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
+Merged Build-Depends: base-files, base-passwd, bash, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, hurd, ncurses-base, ncurses-bin, perl-base, sed, sysvinit-utils, sysvinit, tar, bsdutils, util-linux, libc0.3-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), hurd-dev, debhelper (>= 8), cdbs, r-base-dev (>= 2.10.0)
+Filtered Build-Depends: base-files, base-passwd, bash, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, hurd, ncurses-base, ncurses-bin, perl-base, sed, sysvinit-utils, sysvinit, tar, bsdutils, util-linux, libc0.3-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), hurd-dev, debhelper (>= 8), cdbs, r-base-dev (>= 2.10.0)
+dpkg-deb: building package `sbuild-build-depends-r-bioc-limma-dummy' in `/«BUILDDIR»/resolver-cLNdvj/apt_archive/sbuild-build-depends-r-bioc-limma-dummy.deb'.
+gpg: WARNING: using insecure memory!
+gpg: please see http://www.gnupg.org/faq.html for more information
+OK
+Reading package lists...
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Install r-bioc-limma build dependencies (apt-based resolver) │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+Installing build dependencies
+
Extracting templates from packages: 61%Reading package lists...
+Building dependency tree...
+Reading state information...
+The following packages were automatically installed and are no longer required:
+ cron adduser libsysfs2 libusb-0.1-4p
Use 'apt-get autoremove' to remove them.
The following extra packages will be installed:
- dpatch file fontconfig fontconfig-config gettext gettext-base html2text
- intltool-debian libblas-dev libblas3gf libbz2-dev libcairo2 libcroco3
- libdatrie1 libexpat1 libfontconfig1 libfreetype6 libglib2.0-0 libice6
- libjpeg62 libjpeg62-dev liblapack-dev liblapack3gf libmagic1 libncurses5-dev
+ cdbs dpatch libblas-dev libblas3gf libbz2-dev libcairo2 libdatrie1 libice6
+ libjpeg62 libjpeg8 libjpeg8-dev liblapack-dev liblapack3gf libncurses5-dev
libpango1.0-0 libpaper-utils libpaper1 libpcre3-dev libpcrecpp0
libpixman-1-0 libpng12-dev libreadline-dev libreadline6-dev libsm6
- libthai-data libthai0 libtiff4 libunistring0 libx11-6 libx11-data libxau6
- libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2
- libxrender1 libxss1 libxt6 po-debconf r-base-core tcl8.5 tk8.5
- ttf-dejavu-core ucf unzip x11-common xdg-utils zip zlib1g-dev
+ libthai-data libthai0 libtiff4 libx11-6 libx11-data libxau6 libxcb-render0
+ libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxrender1 libxss1 libxt6
+ r-base-core r-base-dev tcl8.5 tk8.5 unzip x11-common xdg-utils zip
+ zlib1g-dev
Suggested packages:
- devscripts dh-make curl defoma gettext-doc ncurses-doc ttf-baekmuk
- ttf-arphic-gbsn00lp ttf-arphic-bsmi00lp ttf-arphic-gkai00mp
- ttf-arphic-bkai00mp libmail-box-perl ess r-doc-info r-doc-pdf r-mathlib
- r-base-html tclreadline gvfs-bin
+ devscripts curl ncurses-doc ttf-baekmuk ttf-arphic-gbsn00lp
+ ttf-arphic-bsmi00lp ttf-arphic-gkai00mp ttf-arphic-bkai00mp ess r-doc-info
+ r-doc-pdf r-mathlib r-base-html tclreadline gvfs-bin
Recommended packages:
- autotools-dev patchutils autopoint libglib2.0-data shared-mime-info
- x-ttcidfont-conf xml-core libmail-sendmail-perl r-recommended r-doc-html
- xterm x-terminal-emulator libfile-mimeinfo-perl x11-utils x11-xserver-utils
+ autotools-dev patchutils x-ttcidfont-conf r-recommended r-doc-html xterm
+ x-terminal-emulator libfile-mimeinfo-perl x11-utils x11-xserver-utils
The following NEW packages will be installed:
- cdbs debhelper dpatch file fontconfig fontconfig-config gettext gettext-base
- html2text intltool-debian libblas-dev libblas3gf libbz2-dev libcairo2
- libcroco3 libdatrie1 libexpat1 libfontconfig1 libfreetype6 libglib2.0-0
- libice6 libjpeg62 libjpeg62-dev liblapack-dev liblapack3gf libmagic1
- libncurses5-dev libpango1.0-0 libpaper-utils libpaper1 libpcre3-dev
- libpcrecpp0 libpixman-1-0 libpng12-dev libreadline-dev libreadline6-dev
- libsm6 libthai-data libthai0 libtiff4 libunistring0 libx11-6 libx11-data
- libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2
- libxml2 libxrender1 libxss1 libxt6 po-debconf r-base-core r-base-dev tcl8.5
- tk8.5 ttf-dejavu-core ucf unzip x11-common xdg-utils zip zlib1g-dev
-0 upgraded, 66 newly installed, 0 to remove and 2 not upgraded.
-Need to get 0 B/40.6 MB of archives.
-After this operation, 98.2 MB of additional disk space will be used.
+ cdbs dpatch libblas-dev libblas3gf libbz2-dev libcairo2 libdatrie1 libice6
+ libjpeg62 libjpeg8 libjpeg8-dev liblapack-dev liblapack3gf libncurses5-dev
+ libpango1.0-0 libpaper-utils libpaper1 libpcre3-dev libpcrecpp0
+ libpixman-1-0 libpng12-dev libreadline-dev libreadline6-dev libsm6
+ libthai-data libthai0 libtiff4 libx11-6 libx11-data libxau6 libxcb-render0
+ libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxrender1 libxss1 libxt6
+ r-base-core r-base-dev sbuild-build-depends-r-bioc-limma-dummy tcl8.5 tk8.5
+ unzip x11-common xdg-utils zip zlib1g-dev
+0 upgraded, 49 newly installed, 0 to remove and 39 not upgraded.
+Need to get 0 B/31.8 MB of archives.
+After this operation, 75.4 MB of additional disk space will be used.
WARNING: The following packages cannot be authenticated!
- libmagic1 file gettext-base libxml2 ucf html2text libglib2.0-0 libcroco3
- libexpat1 libunistring0 gettext intltool-debian po-debconf debhelper cdbs
- dpatch libfreetype6 ttf-dejavu-core fontconfig-config libfontconfig1
- fontconfig libblas3gf libblas-dev libbz2-dev libpixman-1-0 libxau6 libxdmcp6
- libxcb1 libx11-data libx11-6 libxcb-render0 libxcb-shm0 libxrender1
- libcairo2 libdatrie1 x11-common libice6 libjpeg62 libjpeg62-dev liblapack3gf
- liblapack-dev libncurses5-dev libthai-data libthai0 libxft2 libpango1.0-0
- libpaper1 libpaper-utils libpcrecpp0 libpcre3-dev zlib1g-dev libpng12-dev
- libreadline6-dev libreadline-dev libsm6 libtiff4 libxext6 libxss1 libxt6 zip
- unzip xdg-utils tcl8.5 tk8.5 r-base-core r-base-dev
-
-Extracting templates from packages: 45%
-Extracting templates from packages: 90%
-Extracting templates from packages: 100%
+ libdatrie1 x11-common libice6 libpixman-1-0 libxau6 libxdmcp6 libxcb1
+ libx11-data libx11-6 libxcb-render0 libxcb-shm0 libxrender1 libcairo2
+ libthai-data libthai0 libxft2 libpango1.0-0 libpcrecpp0 libsm6 libxext6
+ libxss1 libxt6 cdbs dpatch libblas3gf libblas-dev libbz2-dev libjpeg62
+ libjpeg8 libjpeg8-dev liblapack3gf liblapack-dev libncurses5-dev libpaper1
+ libpaper-utils libpcre3-dev zlib1g-dev libpng12-dev libreadline6-dev
+ libreadline-dev libtiff4 zip unzip xdg-utils tcl8.5 tk8.5 r-base-core
+ r-base-dev sbuild-build-depends-r-bioc-limma-dummy
+
Extracting templates from packages: 100%
Preconfiguring packages ...
Authentication warning overridden.
-Selecting previously deselected package libmagic1.
-(Reading database ... 13526 files and directories currently installed.)
-Unpacking libmagic1 (from .../libmagic1_5.03-5+b1_hurd-i386.deb) ...
-Selecting previously deselected package file.
-Unpacking file (from .../file_5.03-5+b1_hurd-i386.deb) ...
-Selecting previously deselected package gettext-base.
-Unpacking gettext-base (from .../gettext-base_0.18.1.1-3_hurd-i386.deb) ...
-Selecting previously deselected package libxml2.
-Unpacking libxml2 (from .../libxml2_2.7.8.dfsg-2+b1_hurd-i386.deb) ...
-Selecting previously deselected package ucf.
-Moving old data out of the way
-Unpacking ucf (from .../ucf_3.0025+nmu2_all.deb) ...
-Selecting previously deselected package html2text.
-Unpacking html2text (from .../html2text_1.3.2a-15+b1_hurd-i386.deb) ...
-Selecting previously deselected package libglib2.0-0.
-Unpacking libglib2.0-0 (from .../libglib2.0-0_2.28.6-1_hurd-i386.deb) ...
-Selecting previously deselected package libcroco3.
-Unpacking libcroco3 (from .../libcroco3_0.6.2-1_hurd-i386.deb) ...
-Selecting previously deselected package libexpat1.
-Unpacking libexpat1 (from .../libexpat1_2.0.1-7_hurd-i386.deb) ...
-Selecting previously deselected package libunistring0.
-Unpacking libunistring0 (from .../libunistring0_0.9.3-4_hurd-i386.deb) ...
-Selecting previously deselected package gettext.
-Unpacking gettext (from .../gettext_0.18.1.1-3_hurd-i386.deb) ...
-Selecting previously deselected package intltool-debian.
-Unpacking intltool-debian (from .../intltool-debian_0.35.0+20060710.1_all.deb) ...
-Selecting previously deselected package po-debconf.
-Unpacking po-debconf (from .../po-debconf_1.0.16+nmu1_all.deb) ...
-Selecting previously deselected package debhelper.
-Unpacking debhelper (from .../debhelper_8.1.6_all.deb) ...
-Selecting previously deselected package cdbs.
-Unpacking cdbs (from .../archives/cdbs_0.4.94_all.deb) ...
-Selecting previously deselected package dpatch.
-Unpacking dpatch (from .../archives/dpatch_2.0.31_all.deb) ...
-Selecting previously deselected package libfreetype6.
-Unpacking libfreetype6 (from .../libfreetype6_2.4.4-1_hurd-i386.deb) ...
-Selecting previously deselected package ttf-dejavu-core.
-Unpacking ttf-dejavu-core (from .../ttf-dejavu-core_2.33-1_all.deb) ...
-Selecting previously deselected package fontconfig-config.
-Unpacking fontconfig-config (from .../fontconfig-config_2.8.0-2.2_all.deb) ...
-Selecting previously deselected package libfontconfig1.
-Unpacking libfontconfig1 (from .../libfontconfig1_2.8.0-2.2_hurd-i386.deb) ...
-Selecting previously deselected package fontconfig.
-Unpacking fontconfig (from .../fontconfig_2.8.0-2.2_hurd-i386.deb) ...
-Selecting previously deselected package libblas3gf.
-Unpacking libblas3gf (from .../libblas3gf_1.2-8_hurd-i386.deb) ...
-Selecting previously deselected package libblas-dev.
-Unpacking libblas-dev (from .../libblas-dev_1.2-8_hurd-i386.deb) ...
-Selecting previously deselected package libbz2-dev.
-Unpacking libbz2-dev (from .../libbz2-dev_1.0.5-6_hurd-i386.deb) ...
+Selecting previously deselected package libdatrie1.
+(Reading database ... 14643 files and directories currently installed.)
+Unpacking libdatrie1 (from .../libdatrie1_0.2.4-3_hurd-i386.deb) ...
+Selecting previously deselected package x11-common.
+Unpacking x11-common (from .../x11-common_1%3a7.6+8_all.deb) ...
+Selecting previously deselected package libice6.
+Unpacking libice6 (from .../libice6_2%3a1.0.7-2_hurd-i386.deb) ...
Selecting previously deselected package libpixman-1-0.
-Unpacking libpixman-1-0 (from .../libpixman-1-0_0.21.8-1_hurd-i386.deb) ...
+Unpacking libpixman-1-0 (from .../libpixman-1-0_0.22.2-1_hurd-i386.deb) ...
Selecting previously deselected package libxau6.
-Unpacking libxau6 (from .../libxau6_1%3a1.0.6-1_hurd-i386.deb) ...
+Unpacking libxau6 (from .../libxau6_1%3a1.0.6-3_hurd-i386.deb) ...
Selecting previously deselected package libxdmcp6.
-Unpacking libxdmcp6 (from .../libxdmcp6_1%3a1.1.0-1_hurd-i386.deb) ...
+Unpacking libxdmcp6 (from .../libxdmcp6_1%3a1.1.0-3_hurd-i386.deb) ...
Selecting previously deselected package libxcb1.
-Unpacking libxcb1 (from .../libxcb1_1.7-2_hurd-i386.deb) ...
+Unpacking libxcb1 (from .../libxcb1_1.7-3_hurd-i386.deb) ...
Selecting previously deselected package libx11-data.
-Unpacking libx11-data (from .../libx11-data_2%3a1.4.3-1_all.deb) ...
+Unpacking libx11-data (from .../libx11-data_2%3a1.4.4-1_all.deb) ...
Selecting previously deselected package libx11-6.
-Unpacking libx11-6 (from .../libx11-6_2%3a1.4.3-1_hurd-i386.deb) ...
+Unpacking libx11-6 (from .../libx11-6_2%3a1.4.4-1_hurd-i386.deb) ...
Selecting previously deselected package libxcb-render0.
-Unpacking libxcb-render0 (from .../libxcb-render0_1.7-2_hurd-i386.deb) ...
+Unpacking libxcb-render0 (from .../libxcb-render0_1.7-3_hurd-i386.deb) ...
Selecting previously deselected package libxcb-shm0.
-Unpacking libxcb-shm0 (from .../libxcb-shm0_1.7-2_hurd-i386.deb) ...
+Unpacking libxcb-shm0 (from .../libxcb-shm0_1.7-3_hurd-i386.deb) ...
Selecting previously deselected package libxrender1.
-Unpacking libxrender1 (from .../libxrender1_1%3a0.9.6-1_hurd-i386.deb) ...
+Unpacking libxrender1 (from .../libxrender1_1%3a0.9.6-2_hurd-i386.deb) ...
Selecting previously deselected package libcairo2.
-Unpacking libcairo2 (from .../libcairo2_1.10.2-6_hurd-i386.deb) ...
-Selecting previously deselected package libdatrie1.
-Unpacking libdatrie1 (from .../libdatrie1_0.2.4-2_hurd-i386.deb) ...
-Selecting previously deselected package x11-common.
-Unpacking x11-common (from .../x11-common_1%3a7.6+6_all.deb) ...
-Selecting previously deselected package libice6.
-Unpacking libice6 (from .../libice6_2%3a1.0.7-1_hurd-i386.deb) ...
+Unpacking libcairo2 (from .../libcairo2_1.10.2-6.1_hurd-i386.deb) ...
+Selecting previously deselected package libthai-data.
+Unpacking libthai-data (from .../libthai-data_0.1.15-2_all.deb) ...
+Selecting previously deselected package libthai0.
+Unpacking libthai0 (from .../libthai0_0.1.15-2+b1_hurd-i386.deb) ...
+Selecting previously deselected package libxft2.
+Unpacking libxft2 (from .../libxft2_2.2.0-3_hurd-i386.deb) ...
+Selecting previously deselected package libpango1.0-0.
+Unpacking libpango1.0-0 (from .../libpango1.0-0_1.28.4-2_hurd-i386.deb) ...
+Selecting previously deselected package libpcrecpp0.
+Unpacking libpcrecpp0 (from .../libpcrecpp0_8.12-4_hurd-i386.deb) ...
+Selecting previously deselected package libsm6.
+Unpacking libsm6 (from .../libsm6_2%3a1.2.0-2_hurd-i386.deb) ...
+Selecting previously deselected package libxext6.
+Unpacking libxext6 (from .../libxext6_2%3a1.3.0-3_hurd-i386.deb) ...
+Selecting previously deselected package libxss1.
+Unpacking libxss1 (from .../libxss1_1%3a1.2.1-2_hurd-i386.deb) ...
+Selecting previously deselected package libxt6.
+Unpacking libxt6 (from .../libxt6_1%3a1.1.1-2_hurd-i386.deb) ...
+Selecting previously deselected package cdbs.
+Unpacking cdbs (from .../archives/cdbs_0.4.96_all.deb) ...
+Selecting previously deselected package dpatch.
+Unpacking dpatch (from .../archives/dpatch_2.0.31_all.deb) ...
+Selecting previously deselected package libblas3gf.
+Unpacking libblas3gf (from .../libblas3gf_1.2.20110419-2_hurd-i386.deb) ...
+Selecting previously deselected package libblas-dev.
+Unpacking libblas-dev (from .../libblas-dev_1.2.20110419-2_hurd-i386.deb) ...
+Selecting previously deselected package libbz2-dev.
+Unpacking libbz2-dev (from .../libbz2-dev_1.0.5-6_hurd-i386.deb) ...
Selecting previously deselected package libjpeg62.
-Unpacking libjpeg62 (from .../libjpeg62_6b1-1_hurd-i386.deb) ...
-Selecting previously deselected package libjpeg62-dev.
-Unpacking libjpeg62-dev (from .../libjpeg62-dev_6b1-1_hurd-i386.deb) ...
+Unpacking libjpeg62 (from .../libjpeg62_6b1-2_hurd-i386.deb) ...
+Selecting previously deselected package libjpeg8.
+Unpacking libjpeg8 (from .../libjpeg8_8c-2_hurd-i386.deb) ...
+Selecting previously deselected package libjpeg8-dev.
+Unpacking libjpeg8-dev (from .../libjpeg8-dev_8c-2_hurd-i386.deb) ...
Selecting previously deselected package liblapack3gf.
-Unpacking liblapack3gf (from .../liblapack3gf_3.3.0-4_hurd-i386.deb) ...
+Unpacking liblapack3gf (from .../liblapack3gf_3.3.1-1_hurd-i386.deb) ...
Selecting previously deselected package liblapack-dev.
-Unpacking liblapack-dev (from .../liblapack-dev_3.3.0-4_hurd-i386.deb) ...
+Unpacking liblapack-dev (from .../liblapack-dev_3.3.1-1_hurd-i386.deb) ...
Selecting previously deselected package libncurses5-dev.
Unpacking libncurses5-dev (from .../libncurses5-dev_5.9-1_hurd-i386.deb) ...
-Selecting previously deselected package libthai-data.
-Unpacking libthai-data (from .../libthai-data_0.1.15-1_all.deb) ...
-Selecting previously deselected package libthai0.
-Unpacking libthai0 (from .../libthai0_0.1.15-1_hurd-i386.deb) ...
-Selecting previously deselected package libxft2.
-Unpacking libxft2 (from .../libxft2_2.2.0-2_hurd-i386.deb) ...
-Selecting previously deselected package libpango1.0-0.
-Unpacking libpango1.0-0 (from .../libpango1.0-0_1.28.3-6_hurd-i386.deb) ...
Selecting previously deselected package libpaper1.
Unpacking libpaper1 (from .../libpaper1_1.1.24+nmu1_hurd-i386.deb) ...
Selecting previously deselected package libpaper-utils.
Unpacking libpaper-utils (from .../libpaper-utils_1.1.24+nmu1_hurd-i386.deb) ...
-Selecting previously deselected package libpcrecpp0.
-Unpacking libpcrecpp0 (from .../libpcrecpp0_8.12-3+b1_hurd-i386.deb) ...
Selecting previously deselected package libpcre3-dev.
-Unpacking libpcre3-dev (from .../libpcre3-dev_8.12-3+b1_hurd-i386.deb) ...
+Unpacking libpcre3-dev (from .../libpcre3-dev_8.12-4_hurd-i386.deb) ...
Selecting previously deselected package zlib1g-dev.
Unpacking zlib1g-dev (from .../zlib1g-dev_1%3a1.2.3.4.dfsg-3_hurd-i386.deb) ...
Selecting previously deselected package libpng12-dev.
-Unpacking libpng12-dev (from .../libpng12-dev_1.2.44-2_hurd-i386.deb) ...
+Unpacking libpng12-dev (from .../libpng12-dev_1.2.46-3_hurd-i386.deb) ...
Selecting previously deselected package libreadline6-dev.
Unpacking libreadline6-dev (from .../libreadline6-dev_6.2-2_hurd-i386.deb) ...
Selecting previously deselected package libreadline-dev.
Unpacking libreadline-dev (from .../libreadline-dev_6.2-2_hurd-i386.deb) ...
-Selecting previously deselected package libsm6.
-Unpacking libsm6 (from .../libsm6_2%3a1.2.0-1_hurd-i386.deb) ...
Selecting previously deselected package libtiff4.
Unpacking libtiff4 (from .../libtiff4_3.9.5-1_hurd-i386.deb) ...
-Selecting previously deselected package libxext6.
-Unpacking libxext6 (from .../libxext6_2%3a1.3.0-1_hurd-i386.deb) ...
-Selecting previously deselected package libxss1.
-Unpacking libxss1 (from .../libxss1_1%3a1.2.1-1_hurd-i386.deb) ...
-Selecting previously deselected package libxt6.
-Unpacking libxt6 (from .../libxt6_1%3a1.1.1-1_hurd-i386.deb) ...
Selecting previously deselected package zip.
-Unpacking zip (from .../zip_3.0-3_hurd-i386.deb) ...
+Unpacking zip (from .../zip_3.0-4_hurd-i386.deb) ...
Selecting previously deselected package unzip.
-Unpacking unzip (from .../unzip_6.0-4_hurd-i386.deb) ...
+Unpacking unzip (from .../unzip_6.0-5_hurd-i386.deb) ...
Selecting previously deselected package xdg-utils.
Unpacking xdg-utils (from .../xdg-utils_1.1.0~rc1-2_all.deb) ...
Selecting previously deselected package tcl8.5.
-Unpacking tcl8.5 (from .../tcl8.5_8.5.9-2_hurd-i386.deb) ...
+Unpacking tcl8.5 (from .../tcl8.5_8.5.10-1_hurd-i386.deb) ...
Selecting previously deselected package tk8.5.
-Unpacking tk8.5 (from .../tk8.5_8.5.9-2_hurd-i386.deb) ...
+Unpacking tk8.5 (from .../tk8.5_8.5.10-1_hurd-i386.deb) ...
Selecting previously deselected package r-base-core.
-Unpacking r-base-core (from .../r-base-core_2.13.0-2_hurd-i386.deb) ...
+Unpacking r-base-core (from .../r-base-core_2.13.1-1_hurd-i386.deb) ...
Selecting previously deselected package r-base-dev.
-Unpacking r-base-dev (from .../r-base-dev_2.13.0-2_all.deb) ...
+Unpacking r-base-dev (from .../r-base-dev_2.13.1-1_all.deb) ...
+Selecting previously deselected package sbuild-build-depends-r-bioc-limma-dummy.
+Unpacking sbuild-build-depends-r-bioc-limma-dummy (from .../sbuild-build-depends-r-bioc-limma-dummy.deb) ...
Processing triggers for man-db ...
Processing triggers for install-info ...
-Setting up libmagic1 (5.03-5+b1) ...
-Setting up file (5.03-5+b1) ...
-Setting up gettext-base (0.18.1.1-3) ...
-Setting up libxml2 (2.7.8.dfsg-2+b1) ...
-Setting up ucf (3.0025+nmu2) ...
-Setting up html2text (1.3.2a-15+b1) ...
-Setting up libglib2.0-0 (2.28.6-1) ...
-No schema files found: doing nothing.
-Setting up libcroco3 (0.6.2-1) ...
-Setting up libexpat1 (2.0.1-7) ...
-Setting up libunistring0 (0.9.3-4) ...
-Setting up gettext (0.18.1.1-3) ...
-Setting up intltool-debian (0.35.0+20060710.1) ...
-Setting up po-debconf (1.0.16+nmu1) ...
-Setting up debhelper (8.1.6) ...
-Setting up cdbs (0.4.94) ...
+Setting up libdatrie1 (0.2.4-3) ...
+Setting up x11-common (1:7.6+8) ...
+insserv: warning: script 'K01random-egd' missing LSB tags and overrides
+insserv: warning: script 'random-egd' missing LSB tags and overrides
+All runlevel operations denied by policy
+invoke-rc.d: policy-rc.d denied execution of start.
+Setting up libice6 (2:1.0.7-2) ...
+Setting up libpixman-1-0 (0.22.2-1) ...
+Setting up libxau6 (1:1.0.6-3) ...
+Setting up libxdmcp6 (1:1.1.0-3) ...
+Setting up libxcb1 (1.7-3) ...
+Setting up libx11-data (2:1.4.4-1) ...
+Setting up libx11-6 (2:1.4.4-1) ...
+Setting up libxcb-render0 (1.7-3) ...
+Setting up libxcb-shm0 (1.7-3) ...
+Setting up libxrender1 (1:0.9.6-2) ...
+Setting up libcairo2 (1.10.2-6.1) ...
+Setting up libthai-data (0.1.15-2) ...
+Setting up libthai0 (0.1.15-2+b1) ...
+Setting up libxft2 (2.2.0-3) ...
+Setting up libpango1.0-0 (1.28.4-2) ...
+Setting up libpcrecpp0 (8.12-4) ...
+Setting up libsm6 (2:1.2.0-2) ...
+Setting up libxext6 (2:1.3.0-3) ...
+Setting up libxss1 (1:1.2.1-2) ...
+Setting up libxt6 (1:1.1.1-2) ...
+Setting up cdbs (0.4.96) ...
Setting up dpatch (2.0.31) ...
-Setting up libfreetype6 (2.4.4-1) ...
-Setting up ttf-dejavu-core (2.33-1) ...
-Setting up fontconfig-config (2.8.0-2.2) ...
-Setting up libfontconfig1 (2.8.0-2.2) ...
-Setting up fontconfig (2.8.0-2.2) ...
-Cleaning up old fontconfig caches... done.
-Regenerating fonts cache... done.
-Setting up libblas3gf (1.2-8) ...
+Setting up libblas3gf (1.2.20110419-2) ...
update-alternatives: using /usr/lib/libblas/libblas.so.3gf to provide /usr/lib/libblas.so.3gf (libblas.so.3gf) in auto mode.
-Setting up libblas-dev (1.2-8) ...
+Setting up libblas-dev (1.2.20110419-2) ...
update-alternatives: using /usr/lib/libblas/libblas.so to provide /usr/lib/libblas.so (libblas.so) in auto mode.
Setting up libbz2-dev (1.0.5-6) ...
-Setting up libpixman-1-0 (0.21.8-1) ...
-Setting up libxau6 (1:1.0.6-1) ...
-Setting up libxdmcp6 (1:1.1.0-1) ...
-Setting up libxcb1 (1.7-2) ...
-Setting up libx11-data (2:1.4.3-1) ...
-Setting up libx11-6 (2:1.4.3-1) ...
-Setting up libxcb-render0 (1.7-2) ...
-Setting up libxcb-shm0 (1.7-2) ...
-Setting up libxrender1 (1:0.9.6-1) ...
-Setting up libcairo2 (1.10.2-6) ...
-Setting up libdatrie1 (0.2.4-2) ...
-Setting up x11-common (1:7.6+6) ...
-All runlevel operations denied by policy
-invoke-rc.d: policy-rc.d denied execution of start.
-Setting up libice6 (2:1.0.7-1) ...
-Setting up libjpeg62 (6b1-1) ...
-Setting up libjpeg62-dev (6b1-1) ...
-Setting up liblapack3gf (3.3.0-4) ...
+Setting up libjpeg62 (6b1-2) ...
+Setting up libjpeg8 (8c-2) ...
+Setting up libjpeg8-dev (8c-2) ...
+Setting up liblapack3gf (3.3.1-1) ...
update-alternatives: using /usr/lib/lapack/liblapack.so.3gf to provide /usr/lib/liblapack.so.3gf (liblapack.so.3gf) in auto mode.
-Setting up liblapack-dev (3.3.0-4) ...
+Setting up liblapack-dev (3.3.1-1) ...
update-alternatives: using /usr/lib/lapack/liblapack.so to provide /usr/lib/liblapack.so (liblapack.so) in auto mode.
Setting up libncurses5-dev (5.9-1) ...
-Setting up libthai-data (0.1.15-1) ...
-Setting up libthai0 (0.1.15-1) ...
-Setting up libxft2 (2.2.0-2) ...
-Setting up libpango1.0-0 (1.28.3-6) ...
Setting up libpaper1 (1.1.24+nmu1) ...
Creating config file /etc/papersize with new version
Setting up libpaper-utils (1.1.24+nmu1) ...
-Setting up libpcrecpp0 (8.12-3+b1) ...
-Setting up libpcre3-dev (8.12-3+b1) ...
+Setting up libpcre3-dev (8.12-4) ...
Setting up zlib1g-dev (1:1.2.3.4.dfsg-3) ...
-Setting up libpng12-dev (1.2.44-2) ...
+Setting up libpng12-dev (1.2.46-3) ...
Setting up libreadline6-dev (6.2-2) ...
Setting up libreadline-dev (6.2-2) ...
-Setting up libsm6 (2:1.2.0-1) ...
Setting up libtiff4 (3.9.5-1) ...
-Setting up libxext6 (2:1.3.0-1) ...
-Setting up libxss1 (1:1.2.1-1) ...
-Setting up libxt6 (1:1.1.1-1) ...
-Setting up zip (3.0-3) ...
-Setting up unzip (6.0-4) ...
+Setting up zip (3.0-4) ...
+Setting up unzip (6.0-5) ...
Setting up xdg-utils (1.1.0~rc1-2) ...
-Setting up tcl8.5 (8.5.9-2) ...
+Setting up tcl8.5 (8.5.10-1) ...
update-alternatives: using /usr/bin/tclsh8.5 to provide /usr/bin/tclsh (tclsh) in auto mode.
-Setting up tk8.5 (8.5.9-2) ...
+Setting up tk8.5 (8.5.10-1) ...
update-alternatives: using /usr/bin/wish8.5 to provide /usr/bin/wish (wish) in auto mode.
-Setting up r-base-core (2.13.0-2) ...
+Setting up r-base-core (2.13.1-1) ...
Setting R_PAPERSIZE_USER default to 'a4'
Creating config file /etc/R/Renviron with new version
-Setting up r-base-dev (2.13.0-2) ...
-Removing negative dependencies:
-Checking correctness of source dependencies...
+Setting up r-base-dev (2.13.1-1) ...
+Setting up sbuild-build-depends-r-bioc-limma-dummy (0.invalid.0) ...
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Build environment │
+└──────────────────────────────────────────────────────────────────────────────┘
+
Kernel: GNU 0.3 hurd-i386 (i686-AT386)
-Toolchain package versions: libc0.3-dev_2.13-4 dpkg-dev_1.16.0.3 hurd-dev_20110519-1 gnumach-dev_2:1.3.99.dfsg.git20110305-1 gcc-4.6_4.6.0-9 g++-4.6_4.6.0-9 binutils_2.21.51.20110523-1 libstdc++6-4.6-dev_4.6.0-9 libstdc++6_4.6.0-9
-Package versions: adduser_3.112+nmu2 apt_0.8.14.1 apt-utils_0.8.14.1 base-files_6.4 base-passwd_3.5.22 bash_4.1-3+hurd.1 binutils_2.21.51.20110523-1 bsdmainutils_8.2.2 bsdutils_1:2.16.2-0 build-essential_11.5 bzip2_1.0.5-6 ca-certificates_20110421 cdbs_0.4.94 coreutils_8.5-1 cpio_2.11-7 cpp_4:4.6.0-5 cpp-4.4_4.4.6-3 cpp-4.5_4.5.3-1 cpp-4.6_4.6.0-9 dash_0.5.5.1-7.4 debconf_1.5.39 debfoster_2.6-2 debhelper_8.1.6 debian-archive-keyring_2010.08.28 debian-ports-archive-keyring_2011.01.12 debianutils_4.0.1 diffutils_1:3.0-1 dpatch_2.0.31 dpkg_1.16.0.3 dpkg-dev_1.16.0.3 e2fslibs_1.41.12-4 e2fsprogs_1.41.12-4 fakeroot_1.15.1-1 file_5.03-5+b1 findutils_4.4.2-1+b1 fontconfig_2.8.0-2.2 fontconfig-config_2.8.0-2.2 g++_4:4.4.5-7 g++-4.4_4.4.6-3 g++-4.5_4.5.3-1 g++-4.6_4.6.0-9 gawk_1:3.1.7.dfsg-5 gcc_4:4.6.0-5 gcc-4.2-base_4.2.4-6+b1 gcc-4.4_4.4.6-3 gcc-4.4-base_4.4.6-3 gcc-4.5_4.5.3-1 gcc-4.5-base_4.5.3-1 gcc-4.6_4.6.0-9 gcc-4.6-base_4.6.0-9 gettext_0.18.1.1-3 gettext-base_0.18.1.1-3 gfortran_4:4.6.0-5 gfortran-4.4_4.4.6-3 gfortran-4.6_4.6.0-9 gnumach-dev_2:1.3.99.dfsg.git20110305-1 gnupg_1.4.11-3 gnupg-curl_1.4.11-3 gobjc-4.4_4.4.6-3 gpgv_1.4.11-3 grep_2.6.3-3 groff-base_1.21-5 gzip_1.3.12-9 hostname_3.06 html2text_1.3.2a-15+b1 hurd_20110519-1 hurd-dev_20110519-1 ifupdown_0.6.9+hurd.1 inetutils-tools_2:1.8-3 initscripts_2.88dsf-13.7 insserv_1.14.0-2.1 install-info_4.13a.dfsg.1-6 intltool-debian_0.35.0+20060710.1 libacl1_2.2.47-3 libattr1_1:2.4.44-3 libblas-dev_1.2-8 libblas3gf_1.2-8 libblkid1_2.16.2-0 libboost-iostreams1.42.0_1.42.0-4+b2 libboost-iostreams1.46.1_1.46.1-5 libbz2-1.0_1.0.5-6 libbz2-dev_1.0.5-6 libc-bin_2.13-4 libc-dev-bin_2.13-4 libc0.3_2.13-4 libc0.3-dev_2.13-4 libc0.3-xen_2.13-4 libcairo2_1.10.2-6 libcloog-ppl0_0.15.9-3 libcomerr2_1.41.12-4 libcroco3_0.6.2-1 libcurl3-gnutls_7.21.6-1 libdatrie1_0.2.4-2 libdb5.1_5.1.25-10 libdpkg-perl_1.16.0.3 libelfg0_0.8.13-1 libexpat1_2.0.1-7 libfontconfig1_2.8.0-2.2 libfreetype6_2.4.4-1 libfribidi0_0.19.2-1 libgcc1_1:4.6.0-9 libgcrypt11_1.4.6-5 libgdbm3_1.8.3-9 libgfortran3_4.6.0-9 libglib2.0-0_2.28.6-1 libgmp10_2:5.0.1+dfsg-7 libgmp3c2_2:4.3.2+dfsg-2 libgmpxx4ldbl_2:5.0.1+dfsg-7 libgnutls26_2.10.4-2 libgomp1_4.6.0-9 libgpg-error0_1.10-0.3 libice6_2:1.0.7-1 libident_0.22-3 libidn11_1.20-1 libjpeg62_6b1-1 libjpeg62-dev_6b1-1 liblapack-dev_3.3.0-4 liblapack3gf_3.3.0-4 libldap-2.4-2_2.4.25-1 liblocale-gettext-perl_1.05-6+b1 liblzma2_5.0.0-2 liblzo2-2_2.04-1 libmagic1_5.03-5+b1 libmpc2_0.9-3 libmpfr4_3.0.1-3 libncurses5_5.9-1 libncurses5-dev_5.9-1 libncursesw5_5.9-1 libnewt0.52_0.52.11-2 libobjc2_4.5.3-1 libpam-modules_1.1.2-3 libpam-runtime_1.1.2-3 libpam0g_1.1.2-3 libpango1.0-0_1.28.3-6 libpaper-utils_1.1.24+nmu1 libpaper1_1.1.24+nmu1 libparted0debian1_2.3-3+hurd.1 libpcre3_8.12-3+b1 libpcre3-dev_8.12-3+b1 libpcrecpp0_8.12-3+b1 libpipeline1_1.2.0-2 libpixman-1-0_0.21.8-1 libpng12-0_1.2.44-2 libpng12-dev_1.2.44-2 libpopt0_1.16-1 libppl-c2_0.10.2-9 libppl-c4_0.11.2-3 libppl7_0.10.2-9 libppl9_0.11.2-3 libpthread-stubs0_0.3-2 libpthread-stubs0-dev_0.3-2 libpwl5_0.11.2-3 libquadmath0_4.6.0-9 libreadline-dev_6.2-2 libreadline6_6.2-2 libreadline6-dev_6.2-2 librtmp0_2.3-2 libsasl2-2_2.1.24~rc1.dfsg1+cvs2011-05-23-2 libsasl2-modules_2.1.24~rc1.dfsg1+cvs2011-05-23-2 libslang2_2.2.4-2 libsm6_2:1.2.0-1 libss2_1.41.12-4 libssl0.9.8_0.9.8o-7+b1 libssl1.0.0_1.0.0d-2 libstdc++6_4.6.0-9 libstdc++6-4.4-dev_4.4.6-3 libstdc++6-4.5-dev_4.5.3-1 libstdc++6-4.6-dev_4.6.0-9 libsysfs2_2.1.0+repack-1 libtasn1-3_2.9-3 libthai-data_0.1.15-1 libthai0_0.1.15-1 libtiff4_3.9.5-1 libtimedate-perl_1.2000-1 libunistring0_0.9.3-4 libusb-0.1-4p_2:0.1.12-13+hurd.1 libuuid1_2.16.2-0 libwrap0_7.6.dbs-14+hurd.2 libx11-6_2:1.4.3-1 libx11-data_2:1.4.3-1 libxau6_1:1.0.6-1 libxcb-render0_1.7-2 libxcb-shm0_1.7-2 libxcb1_1.7-2 libxdmcp6_1:1.1.0-1 libxext6_2:1.3.0-1 libxft2_2.2.0-2 libxml2_2.7.8.dfsg-2+b1 libxrender1_1:0.9.6-1 libxss1_1:1.2.1-1 libxt6_1:1.1.1-1 lsb-base_3.2-27 make_3.81-8.1 man-db_2.6.0.2-1 mawk_1.3.3-15 ncurses-base_5.9-1 ncurses-bin_5.9-1 netbase_4.45 netcat-traditional_1.10-39 openssl_1.0.0d-2 passwd_1:4.1.4.2+svn3283-3 patch_2.6.1-2 perl_5.12.3-6 perl-base_5.12.3-6 perl-modules_5.12.3-6 po-debconf_1.0.16+nmu1 procps_1:3.2.8-10 psmisc_22.3-1 r-base-core_2.13.0-2 r-base-dev_2.13.0-2 readline-common_6.2-2 sed_4.2.1-9 sensible-utils_0.0.6 sysv-rc_2.88dsf-13.7 sysvinit_2.88dsf-13.7 sysvinit-utils_2.88dsf-13.7 tar_1.25-2 tcl8.5_8.5.9-2 tk8.5_8.5.9-2 ttf-dejavu-core_2.33-1 tzdata_2011g-1 ucf_3.0025+nmu2 unzip_6.0-4 util-linux_2.16.2-0 wget_1.11.4-4 whiptail_0.52.11-2 x11-common_1:7.6+6 xdg-utils_1.1.0~rc1-2 xz-utils_5.0.0-2 zip_3.0-3 zlib1g_1:1.2.3.4.dfsg-3 zlib1g-dev_1:1.2.3.4.dfsg-3
+Toolchain package versions: binutils_2.21.53.20110805-1 dpkg-dev_1.16.0.3 g++-4.5_4.5.3-3 g++-4.6_4.6.1-1+hurd.1 gcc-4.4_4.4.6-7 gcc-4.5_4.5.3-3 gcc-4.6_4.6.1-1+hurd.1 gnumach-dev_2:1.3.99.dfsg.git20110609-1 hurd-dev_20110519-3 libc0.3-dev_2.13-14 libstdc++6_4.6.1-1+hurd.1 libstdc++6-4.5-dev_4.5.3-3 libstdc++6-4.6-dev_4.6.1-1+hurd.1
+Package versions: adduser_3.113 apt_0.8.15.1 apt-utils_0.8.15.1 autopoint_0.18.1.1-3 base-files_6.4 base-passwd_3.5.22 bash_4.1-3+hurd.1 binutils_2.21.53.20110805-1 bsdmainutils_8.2.3 bsdutils_1:2.16.2-0 build-essential_11.5 bzip2_1.0.5-6 ca-certificates_20110502 cdbs_0.4.96 coreutils_8.5-1 cpp_4:4.6.0-6 cpp-4.4_4.4.6-7 cpp-4.5_4.5.3-3 cpp-4.6_4.6.1-1+hurd.1 cron_3.0pl1-118 dash_0.5.5.1-7.4 debconf_1.5.40 debfoster_2.6-2 debhelper_8.9.3 debian-archive-keyring_2010.08.28 debian-ports-archive-keyring_2011.01.12 debianutils_4.0.2 deborphan_1.7.28.5 dialog_1.1-20110707-1 diffutils_1:3.0-1 dpatch_2.0.31 dpkg_1.16.0.3 dpkg-dev_1.16.0.3 e2fslibs_1.42~WIP-2011-07-02-1 e2fsprogs_1.42~WIP-2011-07-02-1 fakeroot_1.15.1-1 file_5.03-5+b1 findutils_4.4.2-1+b1 fontconfig_2.8.0-3 fontconfig-config_2.8.0-3 g++_4:4.6.0-6 g++-4.5_4.5.3-3 g++-4.6_4.6.1-1+hurd.1 gawk_1:3.1.7.dfsg-5 gcc_4:4.6.0-6 gcc-4.2-base_4.2.4-6+b1 gcc-4.4_4.4.6-7 gcc-4.4-base_4.4.6-7 gcc-4.5_4.5.3-3 gcc-4.5-base_4.5.3-3 gcc-4.6_4.6.1-1+hurd.1 gcc-4.6-base_4.6.1-1+hurd.1 gettext_0.18.1.1-3 gettext-base_0.18.1.1-3 gfortran_4:4.6.0-6 gfortran-4.6_4.6.1-1+hurd.1 git_1:1.7.5.4-1 git-man_1:1.7.5.4-1 gnumach-dev_2:1.3.99.dfsg.git20110609-1 gnupg_1.4.11-3 gpgv_1.4.11-3 grep_2.9-1 groff-base_1.21-6 gzip_1.3.12-9 hostname_3.06 html2text_1.3.2a-15+b1 hurd_20110519-3 hurd-dev_20110519-3 initscripts_2.88dsf-13.10 insserv_1.14.0-2.1 install-info_4.13a.dfsg.1-6 intltool-debian_0.35.0+20060710.1 libacl1_2.2.47-3 libattr1_1:2.4.46-3 libblas-dev_1.2.20110419-2 libblas3gf_1.2.20110419-2 libblkid1_2.19.1-4 libbz2-1.0_1.0.5-6 libbz2-dev_1.0.5-6 libc-bin_2.13-14 libc-dev-bin_2.13-14 libc0.3_2.13-14 libc0.3-dev_2.13-14 libc0.3-xen_2.13-14 libcairo2_1.10.2-6.1 libcloog-ppl0_0.15.9-3 libcomerr2_1.42~WIP-2011-07-02-1 libcroco3_0.6.2-1 libcurl3-gnutls_7.21.7-1 libdatrie1_0.2.4-3 libdb5.1_5.1.25-11 libdigest-sha1-perl_2.13-2 libdpkg-perl_1.16.0.3 libelfg0_0.8.13-3 liberror-perl_0.17-1 libexpat1_2.0.1-7 libfontconfig1_2.8.0-3 libfreetype6_2.4.6-1 libgcc1_1:4.6.1-1+hurd.1 libgcrypt11_1.4.6-9 libgdbm3_1.8.3-10 libgfortran3_4.6.1-1+hurd.1 libglib2.0-0_2.28.6-1 libglib2.0-data_2.28.6-1 libgmp10_2:5.0.1+dfsg-7 libgmpxx4ldbl_2:5.0.1+dfsg-7 libgnutls26_2.10.4-2 libgomp1_4.6.1-1+hurd.1 libgpg-error0_1.10-0.3 libice6_2:1.0.7-2 libidn11_1.22-2 libjpeg62_6b1-2 libjpeg8_8c-2 libjpeg8-dev_8c-2 liblapack-dev_3.3.1-1 liblapack3gf_3.3.1-1 libldap-2.4-2_2.4.25-1 liblzma2_5.0.0-2 libmagic1_5.03-5+b1 libmpc2_0.9-3 libmpfr4_3.0.1-5 libncurses5_5.9-1 libncurses5-dev_5.9-1 libncursesw5_5.9-1 libpam-modules_1.1.3-2 libpam-modules-bin_1.1.3-2 libpam-runtime_1.1.3-2 libpam0g_1.1.3-2 libpango1.0-0_1.28.4-2 libpaper-utils_1.1.24+nmu1 libpaper1_1.1.24+nmu1 libparted0debian1_2.3-3+hurd.1 libpcre3_8.12-4 libpcre3-dev_8.12-4 libpcrecpp0_8.12-4 libpipeline1_1.2.0-3 libpixman-1-0_0.22.2-1 libpng12-0_1.2.46-3 libpng12-dev_1.2.46-3 libpopt0_1.16-1 libppl-c4_0.11.2-3 libppl9_0.11.2-3 libpthread-stubs0_0.3-2.1+hurd.1 libpthread-stubs0-dev_0.3-2.1+hurd.1 libpwl5_0.11.2-3 libquadmath0_4.6.1-1+hurd.1 libreadline-dev_6.2-2 libreadline6_6.2-2 libreadline6-dev_6.2-2 librtmp0_2.3-2 libsasl2-2_2.1.24~rc1.dfsg1+cvs2011-05-23-4 libsasl2-modules_2.1.24~rc1.dfsg1+cvs2011-05-23-4 libslang2_2.2.4-2 libsm6_2:1.2.0-2 libss2_1.42~WIP-2011-07-02-1 libssl0.9.8_0.9.8o-7+b1 libssl1.0.0_1.0.0d-3 libstdc++6_4.6.1-1+hurd.1 libstdc++6-4.5-dev_4.5.3-3 libstdc++6-4.6-dev_4.6.1-1+hurd.1 libsysfs2_2.1.0+repack-1 libtasn1-3_2.9-4 libtext-charwidth-perl_0.04-6+b1 libtext-wrapi18n-perl_0.06-7 libthai-data_0.1.15-2 libthai0_0.1.15-2+b1 libtiff4_3.9.5-1 libtimedate-perl_1.2000-1 libunistring0_0.9.3-4 libusb-0.1-4p_2:0.1.12-13+hurd.1 libuuid1_2.19.1-5 libx11-6_2:1.4.4-1 libx11-data_2:1.4.4-1 libxau6_1:1.0.6-3 libxcb-render0_1.7-3 libxcb-shm0_1.7-3 libxcb1_1.7-3 libxdmcp6_1:1.1.0-3 libxext6_2:1.3.0-3 libxft2_2.2.0-3 libxml2_2.7.8.dfsg-4 libxrender1_1:0.9.6-2 libxss1_1:1.2.1-2 libxt6_1:1.1.1-2 lsb-base_3.2-27 make_3.81-8.1 man-db_2.6.0.2-1 mawk_1.3.3-15 multiarch-support_2.13-10 ncurses-base_5.9-1 ncurses-bin_5.9-1 netbase_4.46 netcat-traditional_1.10-39 openssl_1.0.0d-3 original-awk_2011-05-06-1 passwd_1:4.1.4.2+svn3283-3 patch_2.6.1-2 perl_5.12.4-3 perl-base_5.12.4-3 perl-modules_5.12.4-4 po-debconf_1.0.16+nmu1 procps_1:3.2.8-10 psmisc_22.3-1 r-base-core_2.13.1-1 r-base-dev_2.13.1-1 random-egd_0.5-0+hurd.1 readline-common_6.2-2 rsync_3.0.8-1 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-r-bioc-limma-dummy_0.invalid.0 sed_4.2.1-9 sensible-utils_0.0.6 sgml-base_1.26+nmu1 shared-mime-info_0.90-1 sudo_1.7.2p7-1 sysv-rc_2.88dsf-13.10 sysvinit_2.88dsf-13.10 sysvinit-utils_2.88dsf-13.10 tar_1.25-2 tcl8.5_8.5.10-1 tk8.5_8.5.10-1 ttf-freefont_20100919-1 type-handling_0.2.23 tzdata_2011h-3 ucf_3.0025+nmu2 unzip_6.0-5 util-linux_2.16.2-0 x11-common_1:7.6+8 xdg-utils_1.1.0~rc1-2 xml-core_0.13 xz-utils_5.0.0-2 zip_3.0-4 zlib1g_1:1.2.3.4.dfsg-3 zlib1g-dev_1:1.2.3.4.dfsg-3
┌──────────────────────────────────────────────────────────────────────────────┐
│ Build │
@@ -395,16 +446,34 @@ Unpack source
─────────────
gpgv: keyblock resource `/home/buildd/.gnupg/trustedkeys.gpg': file open error
-gpgv: Signature made Thu Jun 2 04:18:41 2011 UTC using RSA key ID 2295D502
+gpgv: Signature made Sun Aug 14 11:36:35 2011 UTC using RSA key ID 2295D502
gpgv: Can't check signature: public key not found
-dpkg-source: warning: failed to verify signature on ./r-bioc-limma_3.8.2-1.dsc
-dpkg-source: info: extracting r-bioc-limma in r-bioc-limma-3.8.2
-dpkg-source: info: unpacking r-bioc-limma_3.8.2.orig.tar.gz
-dpkg-source: info: applying r-bioc-limma_3.8.2-1.diff.gz
+dpkg-source: warning: failed to verify signature on ./r-bioc-limma_3.8.3-1.dsc
+dpkg-source: info: extracting r-bioc-limma in r-bioc-limma-3.8.3
+dpkg-source: info: unpacking r-bioc-limma_3.8.3.orig.tar.gz
+dpkg-source: info: applying r-bioc-limma_3.8.3-1.diff.gz
Check disc space
────────────────
+Sufficient free space for build
+
+User Environment
+────────────────
+
+HOME=/home/buildd
+LOGNAME=buildd
+OLDPWD=/
+PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/X11R6/bin
+PWD=/«PKGBUILDDIR»
+SHELL=/bin/sh
+SUDO_COMMAND=/usr/sbin/chroot /«CHROOT» su buildd -s /bin/sh -c cd '/«PKGBUILDDIR»' && 'env'
+SUDO_GID=107
+SUDO_UID=60000
+SUDO_USER=buildd
+TERM=rxvt-unicode
+USER=buildd
+USERNAME=root
dpkg-buildpackage
─────────────────
@@ -415,8 +484,8 @@ dpkg-buildpackage: export CXXFLAGS from dpkg-buildflags (origin: vendor): -g -O2
dpkg-buildpackage: export FFLAGS from dpkg-buildflags (origin: vendor): -g -O2
dpkg-buildpackage: export LDFLAGS from dpkg-buildflags (origin: vendor):
dpkg-buildpackage: source package r-bioc-limma
-dpkg-buildpackage: source version 3.8.2-1
- dpkg-source --before-build r-bioc-limma-3.8.2
+dpkg-buildpackage: source version 3.8.3-1
+ dpkg-source --before-build r-bioc-limma-3.8.3
dpkg-buildpackage: host architecture hurd-i386
/usr/bin/fakeroot debian/rules clean
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
@@ -424,9 +493,9 @@ test -x debian/rules
dh_testroot
/usr/bin/make -f debian/rules reverse-config
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
-make[1]: Entering directory `/build/buildd-r-bioc-limma_3.8.2-1-hurd-i386-FytMjw/r-bioc-limma-3.8.2'
+make[1]: Entering directory `/«PKGBUILDDIR»'
make[1]: Nothing to be done for `reverse-config'.
-make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.8.2-1-hurd-i386-FytMjw/r-bioc-limma-3.8.2'
+make[1]: Leaving directory `/«PKGBUILDDIR»'
if [ "reverse-patches" = "reverse-patches" ]; then rm -f debian/stamp-patched; fi
patches:
if [ "reverse-patches" != "reverse-patches" ]; then touch debian/stamp-patched; fi
@@ -437,20 +506,20 @@ for dir in debian/patches ; do \
rm -f $dir/*.log ; \
done
dh_clean
+ debian/rules build
if test -d src; then \
find src -regex ".*\..*o" | \
xargs --no-run-if-empty -r rm; \
fi
rm -f config.log config.status
- debian/rules build
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
test -x debian/rules
mkdir -p "."
/usr/bin/make -f debian/rules reverse-config
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
-make[1]: Entering directory `/build/buildd-r-bioc-limma_3.8.2-1-hurd-i386-FytMjw/r-bioc-limma-3.8.2'
+make[1]: Entering directory `/«PKGBUILDDIR»'
make[1]: Nothing to be done for `reverse-config'.
-make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.8.2-1-hurd-i386-FytMjw/r-bioc-limma-3.8.2'
+make[1]: Leaving directory `/«PKGBUILDDIR»'
if [ "debian/stamp-patched" = "reverse-patches" ]; then rm -f debian/stamp-patched; fi
patches:
if [ "debian/stamp-patched" != "reverse-patches" ]; then touch debian/stamp-patched; fi
@@ -459,9 +528,9 @@ if [ "debian/stamp-patched" != "reverse-patches" ] ; then \
fi
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
/usr/bin/fakeroot debian/rules binary-arch
-make[1]: Entering directory `/build/buildd-r-bioc-limma_3.8.2-1-hurd-i386-FytMjw/r-bioc-limma-3.8.2'
+make[1]: Entering directory `/«PKGBUILDDIR»'
make[1]: Nothing to be done for `update-config'.
-make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.8.2-1-hurd-i386-FytMjw/r-bioc-limma-3.8.2'
+make[1]: Leaving directory `/«PKGBUILDDIR»'
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
test -x debian/rules
dh_testroot
@@ -470,25 +539,25 @@ dh_installdirs -A
mkdir -p "."
dh_installdirs usr/lib/R/site-library
if test -f /usr/bin/xvfb-run; then \
- xvfb-run \
- R CMD INSTALL -l /build/buildd-r-bioc-limma_3.8.2-1-hurd-i386-FytMjw/r-bioc-limma-3.8.2/debian/r-bioc-limma/usr/lib/R/site-library --clean \
+ xvfb-run -a \
+ R CMD INSTALL -l /«PKGBUILDDIR»/debian/r-bioc-limma/usr/lib/R/site-library --clean \
. ; \
else \
- R CMD INSTALL -l /build/buildd-r-bioc-limma_3.8.2-1-hurd-i386-FytMjw/r-bioc-limma-3.8.2/debian/r-bioc-limma/usr/lib/R/site-library \
+ R CMD INSTALL -l /«PKGBUILDDIR»/debian/r-bioc-limma/usr/lib/R/site-library \
--clean . ;\
fi
* installing *source* package 'limma' ...
** libs
-make[1]: Entering directory `/build/buildd-r-bioc-limma_3.8.2-1-hurd-i386-FytMjw/r-bioc-limma-3.8.2/src'
+make[1]: Entering directory `/«PKGBUILDDIR»/src'
gcc -I/usr/share/R/include -fpic -std=gnu99 -O3 -pipe -g -c normexp.c -o normexp.o
normexp.c: In function 'fit_saddle_nelder_mead':
normexp.c:153:3: warning: floating constant exceeds range of 'double' [-Woverflow]
gcc -shared -o limma.so normexp.o -L/usr/lib/R/lib -lR
-make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.8.2-1-hurd-i386-FytMjw/r-bioc-limma-3.8.2/src'
-make[1]: Entering directory `/build/buildd-r-bioc-limma_3.8.2-1-hurd-i386-FytMjw/r-bioc-limma-3.8.2/src'
-installing to /build/buildd-r-bioc-limma_3.8.2-1-hurd-i386-FytMjw/r-bioc-limma-3.8.2/debian/r-bioc-limma/usr/lib/R/site-library/limma/libs
+make[1]: Leaving directory `/«PKGBUILDDIR»/src'
+make[1]: Entering directory `/«PKGBUILDDIR»/src'
+installing to /«PKGBUILDDIR»/debian/r-bioc-limma/usr/lib/R/site-library/limma/libs
** R
-make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.8.2-1-hurd-i386-FytMjw/r-bioc-limma-3.8.2/src'
+make[1]: Leaving directory `/«PKGBUILDDIR»/src'
** inst
** preparing package for lazy loading
** help
@@ -497,17 +566,17 @@ make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.8.2-1-hurd-i386-FytMjw/
** testing if installed package can be loaded
* DONE (limma)
-rm -vf /build/buildd-r-bioc-limma_3.8.2-1-hurd-i386-FytMjw/r-bioc-limma-3.8.2/debian/r-bioc-limma/usr/lib/R/site-library/R.css \
- /build/buildd-r-bioc-limma_3.8.2-1-hurd-i386-FytMjw/r-bioc-limma-3.8.2/debian/r-bioc-limma/usr/lib/R/site-library/limma/COPYING \
- /build/buildd-r-bioc-limma_3.8.2-1-hurd-i386-FytMjw/r-bioc-limma-3.8.2/debian/r-bioc-limma/usr/lib/R/site-library/limma/LICENSE.txt
+rm -vf /«PKGBUILDDIR»/debian/r-bioc-limma/usr/lib/R/site-library/R.css \
+ /«PKGBUILDDIR»/debian/r-bioc-limma/usr/lib/R/site-library/limma/COPYING \
+ /«PKGBUILDDIR»/debian/r-bioc-limma/usr/lib/R/site-library/limma/LICENSE.txt
if test -f debian/overrides; then \
- install -d /build/buildd-r-bioc-limma_3.8.2-1-hurd-i386-FytMjw/r-bioc-limma-3.8.2/debian/r-bioc-limma/usr/share/lintian/overrides ; \
+ install -d /«PKGBUILDDIR»/debian/r-bioc-limma/usr/share/lintian/overrides ; \
install -m 0644 debian/overrides \
- /build/buildd-r-bioc-limma_3.8.2-1-hurd-i386-FytMjw/r-bioc-limma-3.8.2/debian/r-bioc-limma/usr/share/lintian/overrides/r-bioc-limma; \
+ /«PKGBUILDDIR»/debian/r-bioc-limma/usr/share/lintian/overrides/r-bioc-limma; \
fi
Adding cdbs dependencies to debian/r-bioc-limma.substvars
dh_installdirs -pr-bioc-limma
-echo "R:Depends=r-base-core (>= 2.13.0~)" >> debian/r-bioc-limma.substvars
+echo "R:Depends=r-base-core (>= 2.13.1~)" >> debian/r-bioc-limma.substvars
dh_installdocs -pr-bioc-limma
dh_installexamples -pr-bioc-limma
dh_installman -pr-bioc-limma
@@ -539,58 +608,70 @@ dh_shlibdeps -pr-bioc-limma
dh_gencontrol -pr-bioc-limma
dh_md5sums -pr-bioc-limma
dh_builddeb -pr-bioc-limma
-dpkg-deb: building package `r-bioc-limma' in `../r-bioc-limma_3.8.2-1_hurd-i386.deb'.
- dpkg-genchanges -B -mDebian GNU/Hurd Build Daemon <buildd_hurd-i386-rossini at buildd.debian.org> >../r-bioc-limma_3.8.2-1_hurd-i386.changes
+dpkg-deb: building package `r-bioc-limma' in `../r-bioc-limma_3.8.3-1_hurd-i386.deb'.
+ dpkg-genchanges -B -mDebian GNU/Hurd Build Daemon <buildd_hurd-i386-bach at buildd.debian.org> >../r-bioc-limma_3.8.3-1_hurd-i386.changes
dpkg-genchanges: arch-specific upload - not including arch-independent packages
dpkg-genchanges: binary-only upload - not including any source code
- dpkg-source --after-build r-bioc-limma-3.8.2
+ dpkg-source --after-build r-bioc-limma-3.8.3
dpkg-buildpackage: binary only upload (no source included)
────────────────────────────────────────────────────────────────────────────────
-Build finished at 20110603-1131
+Build finished at 20110816-0840
+
+Finished
+────────
+
+I: Built successfully
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Changes │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+
+r-bioc-limma_3.8.3-1_hurd-i386.changes:
+───────────────────────────────────────
-r-bioc-limma_3.8.2-1_hurd-i386.changes:
Format: 1.8
-Date: Thu, 02 Jun 2011 13:07:58 +0900
+Date: Sun, 14 Aug 2011 20:30:21 +0900
Source: r-bioc-limma
Binary: r-bioc-limma
Architecture: hurd-i386
-Version: 3.8.2-1
+Version: 3.8.3-1
Distribution: sid
Urgency: low
-Maintainer: Debian GNU/Hurd Build Daemon <buildd_hurd-i386-rossini at buildd.debian.org>
+Maintainer: Debian GNU/Hurd Build Daemon <buildd_hurd-i386-bach at buildd.debian.org>
Changed-By: Charles Plessy <plessy at debian.org>
Description:
r-bioc-limma - linear models for microarray data
-Closes: 628548
Changes:
- r-bioc-limma (3.8.2-1) unstable; urgency=low
+ r-bioc-limma (3.8.3-1) unstable; urgency=low
.
- * Initial release (closes: #628548).
+ * New upstream release.
+ * [e891bb6b] Corrected VCS-Git url.
Checksums-Sha1:
- d940e10f8d249c1b2cbba3b82529f59652435fde 1397864 r-bioc-limma_3.8.2-1_hurd-i386.deb
+ 2d927e99e2e02854ccbb64e57e1bfdf704ee5cdc 1396070 r-bioc-limma_3.8.3-1_hurd-i386.deb
Checksums-Sha256:
- ce21284c52e74d5b40229324a205834176497655878f34c33e4ccebd7bdf39c8 1397864 r-bioc-limma_3.8.2-1_hurd-i386.deb
+ 3460d65d413c5a876ccb75587bbf4e353556b9279bf759339f76a0a3f60c1c46 1396070 r-bioc-limma_3.8.3-1_hurd-i386.deb
Files:
- 5957133de8d14f87e5bbd6d3176fe413 1397864 gnu-r optional r-bioc-limma_3.8.2-1_hurd-i386.deb
+ acd513bc6b34adbc53a87a00d2bd4670 1396070 gnu-r optional r-bioc-limma_3.8.3-1_hurd-i386.deb
┌──────────────────────────────────────────────────────────────────────────────┐
│ Package contents │
└──────────────────────────────────────────────────────────────────────────────┘
-r-bioc-limma_3.8.2-1_hurd-i386.deb
+r-bioc-limma_3.8.3-1_hurd-i386.deb
──────────────────────────────────
new debian package, version 2.0.
- size 1397864 bytes: control archive= 1514 bytes.
- 774 bytes, 16 lines control
+ size 1396070 bytes: control archive= 1519 bytes.
+ 775 bytes, 16 lines control
2226 bytes, 29 lines md5sums
Package: r-bioc-limma
- Version: 3.8.2-1
+ Version: 3.8.3-1
Architecture: hurd-i386
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
- Installed-Size: 1676
- Depends: libc0.3 (>= 2.13), r-base-core (>= 2.13.0~)
+ Installed-Size: 1668
+ Depends: libc0.3 (>= 2.2.6), r-base-core (>= 2.13.1~)
Section: gnu-r
Priority: optional
Homepage: http://bioinf.wehi.edu.au/limma/
@@ -602,174 +683,194 @@ r-bioc-limma_3.8.2-1_hurd-i386.deb
apply to all array platforms and treat Affymetrix, single channel and two
channel experiments in a unified way.
-drwxr-xr-x root/root 0 2011-06-03 11:29 ./
-drwxr-xr-x root/root 0 2011-06-03 11:29 ./usr/
-drwxr-xr-x root/root 0 2011-06-03 11:26 ./usr/lib/
-drwxr-xr-x root/root 0 2011-06-03 11:26 ./usr/lib/R/
-drwxr-xr-x root/root 0 2011-06-03 11:29 ./usr/lib/R/site-library/
-drwxr-xr-x root/root 0 2011-06-03 11:28 ./usr/lib/R/site-library/limma/
--rw-r--r-- root/root 1872 2011-06-03 11:27 ./usr/lib/R/site-library/limma/NAMESPACE
--rw-r--r-- root/root 997 2011-06-03 11:27 ./usr/lib/R/site-library/limma/DESCRIPTION
-drwxr-xr-x root/root 0 2011-06-03 11:28 ./usr/lib/R/site-library/limma/Meta/
--rw-r--r-- root/root 1044 2011-06-03 11:27 ./usr/lib/R/site-library/limma/Meta/package.rds
--rw-r--r-- root/root 5946 2011-06-03 11:28 ./usr/lib/R/site-library/limma/Meta/Rd.rds
--rw-r--r-- root/root 5522 2011-06-03 11:28 ./usr/lib/R/site-library/limma/Meta/hsearch.rds
--rw-r--r-- root/root 2853 2011-06-03 11:28 ./usr/lib/R/site-library/limma/Meta/links.rds
--rw-r--r-- root/root 217 2011-06-03 11:28 ./usr/lib/R/site-library/limma/Meta/vignette.rds
--rw-r--r-- root/root 503 2011-06-03 11:28 ./usr/lib/R/site-library/limma/Meta/nsInfo.rds
-drwxr-xr-x root/root 0 2011-06-03 11:29 ./usr/lib/R/site-library/limma/libs/
--rw-r--r-- root/root 8076 2011-06-03 11:29 ./usr/lib/R/site-library/limma/libs/limma.so
-drwxr-xr-x root/root 0 2011-06-03 11:27 ./usr/lib/R/site-library/limma/R/
--rw-r--r-- root/root 384 2011-06-03 11:27 ./usr/lib/R/site-library/limma/R/limma
--rw-r--r-- root/root 172733 2011-06-03 11:27 ./usr/lib/R/site-library/limma/R/limma.rdb
--rw-r--r-- root/root 3745 2011-06-03 11:27 ./usr/lib/R/site-library/limma/R/limma.rdx
-drwxr-xr-x root/root 0 2011-06-03 11:28 ./usr/lib/R/site-library/limma/doc/
--rwxr-xr-x root/root 84633 2011-06-03 11:27 ./usr/lib/R/site-library/limma/doc/changelog.txt
--rwxr-xr-x root/root 673 2011-06-03 11:27 ./usr/lib/R/site-library/limma/doc/index.html
--rwxr-xr-x root/root 1711 2011-06-03 11:27 ./usr/lib/R/site-library/limma/doc/limma.Rnw
--rw-r--r-- root/root 45616 2011-06-03 11:27 ./usr/lib/R/site-library/limma/doc/limma.pdf
--rw-r--r-- root/root 687780 2011-06-03 11:27 ./usr/lib/R/site-library/limma/doc/usersguide.pdf
--rwxr-xr-x root/root 1230 2011-06-03 11:27 ./usr/lib/R/site-library/limma/CITATION
-drwxr-xr-x root/root 0 2011-06-03 11:28 ./usr/lib/R/site-library/limma/help/
--rw-r--r-- root/root 1349 2011-06-03 11:28 ./usr/lib/R/site-library/limma/help/paths.rds
--rw-r--r-- root/root 451100 2011-06-03 11:28 ./usr/lib/R/site-library/limma/help/limma.rdb
--rw-r--r-- root/root 3261 2011-06-03 11:28 ./usr/lib/R/site-library/limma/help/limma.rdx
--rw-r--r-- root/root 6150 2011-06-03 11:28 ./usr/lib/R/site-library/limma/help/AnIndex
--rw-r--r-- root/root 2361 2011-06-03 11:28 ./usr/lib/R/site-library/limma/help/aliases.rds
-drwxr-xr-x root/root 0 2011-06-03 11:28 ./usr/lib/R/site-library/limma/html/
--rw-r--r-- root/root 34039 2011-06-03 11:28 ./usr/lib/R/site-library/limma/html/00Index.html
--rw-r--r-- root/root 1179 2011-06-03 11:28 ./usr/lib/R/site-library/limma/html/R.css
--rw-r--r-- root/root 9360 2011-06-03 11:28 ./usr/lib/R/site-library/limma/INDEX
-drwxr-xr-x root/root 0 2011-06-03 11:29 ./usr/share/
-drwxr-xr-x root/root 0 2011-06-03 11:29 ./usr/share/doc/
-drwxr-xr-x root/root 0 2011-06-03 11:29 ./usr/share/doc/r-bioc-limma/
--rw-r--r-- root/root 2116 2011-06-03 11:23 ./usr/share/doc/r-bioc-limma/copyright
--rw-r--r-- root/root 25983 2011-05-20 04:14 ./usr/share/doc/r-bioc-limma/changelog.gz
--rw-r--r-- root/root 161 2011-06-03 11:23 ./usr/share/doc/r-bioc-limma/changelog.Debian.gz
+drwxr-xr-x root/root 0 2011-08-16 08:39 ./
+drwxr-xr-x root/root 0 2011-08-16 08:39 ./usr/
+drwxr-xr-x root/root 0 2011-08-16 08:39 ./usr/lib/
+drwxr-xr-x root/root 0 2011-08-16 08:39 ./usr/lib/R/
+drwxr-xr-x root/root 0 2011-08-16 08:39 ./usr/lib/R/site-library/
+drwxr-xr-x root/root 0 2011-08-16 08:39 ./usr/lib/R/site-library/limma/
+-rw-r--r-- root/root 1872 2011-08-16 08:39 ./usr/lib/R/site-library/limma/NAMESPACE
+-rw-r--r-- root/root 997 2011-08-16 08:39 ./usr/lib/R/site-library/limma/DESCRIPTION
+drwxr-xr-x root/root 0 2011-08-16 08:39 ./usr/lib/R/site-library/limma/Meta/
+-rw-r--r-- root/root 1044 2011-08-16 08:39 ./usr/lib/R/site-library/limma/Meta/package.rds
+-rw-r--r-- root/root 5947 2011-08-16 08:39 ./usr/lib/R/site-library/limma/Meta/Rd.rds
+-rw-r--r-- root/root 5524 2011-08-16 08:39 ./usr/lib/R/site-library/limma/Meta/hsearch.rds
+-rw-r--r-- root/root 2854 2011-08-16 08:39 ./usr/lib/R/site-library/limma/Meta/links.rds
+-rw-r--r-- root/root 217 2011-08-16 08:39 ./usr/lib/R/site-library/limma/Meta/vignette.rds
+-rw-r--r-- root/root 505 2011-08-16 08:39 ./usr/lib/R/site-library/limma/Meta/nsInfo.rds
+drwxr-xr-x root/root 0 2011-08-16 08:40 ./usr/lib/R/site-library/limma/libs/
+-rw-r--r-- root/root 8120 2011-08-16 08:40 ./usr/lib/R/site-library/limma/libs/limma.so
+drwxr-xr-x root/root 0 2011-08-16 08:39 ./usr/lib/R/site-library/limma/R/
+-rw-r--r-- root/root 384 2011-08-16 08:39 ./usr/lib/R/site-library/limma/R/limma
+-rw-r--r-- root/root 173259 2011-08-16 08:39 ./usr/lib/R/site-library/limma/R/limma.rdb
+-rw-r--r-- root/root 3744 2011-08-16 08:39 ./usr/lib/R/site-library/limma/R/limma.rdx
+drwxr-xr-x root/root 0 2011-08-16 08:39 ./usr/lib/R/site-library/limma/doc/
+-rwxr-xr-x root/root 84899 2011-08-16 08:39 ./usr/lib/R/site-library/limma/doc/changelog.txt
+-rwxr-xr-x root/root 673 2011-08-16 08:39 ./usr/lib/R/site-library/limma/doc/index.html
+-rwxr-xr-x root/root 1711 2011-08-16 08:39 ./usr/lib/R/site-library/limma/doc/limma.Rnw
+-rw-r--r-- root/root 45616 2011-08-16 08:39 ./usr/lib/R/site-library/limma/doc/limma.pdf
+-rw-r--r-- root/root 687780 2011-08-16 08:39 ./usr/lib/R/site-library/limma/doc/usersguide.pdf
+-rwxr-xr-x root/root 1230 2011-08-16 08:39 ./usr/lib/R/site-library/limma/CITATION
+drwxr-xr-x root/root 0 2011-08-16 08:39 ./usr/lib/R/site-library/limma/help/
+-rw-r--r-- root/root 1302 2011-08-16 08:39 ./usr/lib/R/site-library/limma/help/paths.rds
+-rw-r--r-- root/root 446212 2011-08-16 08:39 ./usr/lib/R/site-library/limma/help/limma.rdb
+-rw-r--r-- root/root 3267 2011-08-16 08:39 ./usr/lib/R/site-library/limma/help/limma.rdx
+-rw-r--r-- root/root 6150 2011-08-16 08:39 ./usr/lib/R/site-library/limma/help/AnIndex
+-rw-r--r-- root/root 2363 2011-08-16 08:39 ./usr/lib/R/site-library/limma/help/aliases.rds
+drwxr-xr-x root/root 0 2011-08-16 08:39 ./usr/lib/R/site-library/limma/html/
+-rw-r--r-- root/root 34039 2011-08-16 08:39 ./usr/lib/R/site-library/limma/html/00Index.html
+-rw-r--r-- root/root 1179 2011-08-16 08:39 ./usr/lib/R/site-library/limma/html/R.css
+-rw-r--r-- root/root 9360 2011-08-16 08:39 ./usr/lib/R/site-library/limma/INDEX
+drwxr-xr-x root/root 0 2011-08-16 08:39 ./usr/share/
+drwxr-xr-x root/root 0 2011-08-16 08:39 ./usr/share/doc/
+drwxr-xr-x root/root 0 2011-08-16 08:40 ./usr/share/doc/r-bioc-limma/
+-rw-r--r-- root/root 2117 2011-08-16 08:37 ./usr/share/doc/r-bioc-limma/copyright
+-rw-r--r-- root/root 26050 2011-08-08 16:14 ./usr/share/doc/r-bioc-limma/changelog.gz
+-rw-r--r-- root/root 234 2011-08-16 08:37 ./usr/share/doc/r-bioc-limma/changelog.Debian.gz
┌──────────────────────────────────────────────────────────────────────────────┐
-│ Finished │
+│ Post Build │
└──────────────────────────────────────────────────────────────────────────────┘
-Built successfully
-────────────────────────────────────────────────────────────────────────────────
-Purging /home/buildd/build/chroot-sid/build/buildd-r-bioc-limma_3.8.2-1-hurd-i386-FytMjw
-(Reading database ... 16925 files and directories currently installed.)
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Cleanup │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+Purging /«BUILDDIR»
+Reading package lists...
+Building dependency tree...
+Reading state information...
+The following packages were automatically installed and are no longer required:
+ cron adduser libsysfs2 libusb-0.1-4p
+Use 'apt-get autoremove' to remove them.
+0 upgraded, 0 newly installed, 0 to remove and 39 not upgraded.
+Reading package lists...
+Building dependency tree...
+Reading state information...
+The following packages were automatically installed and are no longer required:
+ cron adduser libsysfs2 libusb-0.1-4p
+Use 'apt-get autoremove' to remove them.
+The following packages will be REMOVED:
+ cdbs* dpatch* libblas-dev* libblas3gf* libbz2-dev* libcairo2* libdatrie1*
+ libice6* libjpeg62* libjpeg8* libjpeg8-dev* liblapack-dev* liblapack3gf*
+ libncurses5-dev* libpango1.0-0* libpaper-utils* libpaper1* libpcre3-dev*
+ libpcrecpp0* libpixman-1-0* libpng12-dev* libreadline-dev* libreadline6-dev*
+ libsm6* libthai-data* libthai0* libtiff4* libx11-6* libx11-data* libxau6*
+ libxcb-render0* libxcb-shm0* libxcb1* libxdmcp6* libxext6* libxft2*
+ libxrender1* libxss1* libxt6* r-base-core* r-base-dev*
+ sbuild-build-depends-core-dummy* sbuild-build-depends-r-bioc-limma-dummy*
+ tcl8.5* tk8.5* unzip* x11-common* xdg-utils* zip* zlib1g-dev*
+0 upgraded, 0 newly installed, 50 to remove and 39 not upgraded.
+After this operation, 75.4 MB disk space will be freed.
+(Reading database ... 17107 files and directories currently installed.)
+Removing sbuild-build-depends-r-bioc-limma-dummy ...
Removing r-base-dev ...
+Removing cdbs ...
Removing dpatch ...
Purging configuration files for dpatch ...
+Removing liblapack-dev ...
+Removing libblas-dev ...
Removing r-base-core ...
-Purging configuration files for r-base-core ...
dpkg: warning: while removing r-base-core, directory '/etc/R' not empty so not removed.
-Removing liblapack-dev ...
-Removing xdg-utils ...
-Removing zip ...
-Removing libpcre3-dev ...
-Removing libpaper-utils ...
-Removing libbz2-dev ...
+Purging configuration files for r-base-core ...
Removing liblapack3gf ...
Purging configuration files for liblapack3gf ...
-Removing libreadline-dev ...
+Removing libblas3gf ...
+Purging configuration files for libblas3gf ...
+Removing libbz2-dev ...
Removing libpango1.0-0 ...
Purging configuration files for libpango1.0-0 ...
-Removing cdbs ...
-Removing libreadline6-dev ...
-Removing libjpeg62-dev ...
-Removing debhelper ...
-Removing libpng12-dev ...
+Removing libcairo2 ...
+Purging configuration files for libcairo2 ...
Removing libthai0 ...
Purging configuration files for libthai0 ...
-Removing libncurses5-dev ...
-Removing libtiff4 ...
-Purging configuration files for libtiff4 ...
-Removing libpcrecpp0 ...
-Purging configuration files for libpcrecpp0 ...
-Removing libblas-dev ...
-Removing tk8.5 ...
-Purging configuration files for tk8.5 ...
-Removing unzip ...
-Purging configuration files for unzip ...
-Removing file ...
-Purging configuration files for file ...
-Removing zlib1g-dev ...
+Removing libdatrie1 ...
+Purging configuration files for libdatrie1 ...
Removing libxt6 ...
Purging configuration files for libxt6 ...
-Removing fontconfig ...
-Purging configuration files for fontconfig ...
-Removing libcairo2 ...
-Purging configuration files for libcairo2 ...
-Removing libxss1 ...
-Purging configuration files for libxss1 ...
-Removing po-debconf ...
+Removing libsm6 ...
+Purging configuration files for libsm6 ...
+Removing libice6 ...
+Purging configuration files for libice6 ...
+Removing libtiff4 ...
+Purging configuration files for libtiff4 ...
+Removing libjpeg62 ...
+Removing libjpeg8-dev ...
+Removing libjpeg8 ...
+Removing libreadline-dev ...
+Removing libreadline6-dev ...
+Removing libncurses5-dev ...
+Removing libpaper-utils ...
Removing libpaper1 ...
Purging configuration files for libpaper1 ...
-Removing libthai-data ...
-Removing libjpeg62 ...
-Removing intltool-debian ...
+Removing libpcre3-dev ...
+Removing libpcrecpp0 ...
+Purging configuration files for libpcrecpp0 ...
Removing libpixman-1-0 ...
Purging configuration files for libpixman-1-0 ...
-Removing libdatrie1 ...
-Purging configuration files for libdatrie1 ...
-Removing html2text ...
-Purging configuration files for html2text ...
-Removing tcl8.5 ...
-Purging configuration files for tcl8.5 ...
-Removing libsm6 ...
-Purging configuration files for libsm6 ...
+Removing libpng12-dev ...
+Removing libthai-data ...
+Removing tk8.5 ...
+Purging configuration files for tk8.5 ...
Removing libxft2 ...
Purging configuration files for libxft2 ...
-Removing libblas3gf ...
-Purging configuration files for libblas3gf ...
-Removing libmagic1 ...
-Purging configuration files for libmagic1 ...
+Removing libxss1 ...
+Purging configuration files for libxss1 ...
+Removing libxrender1 ...
+Purging configuration files for libxrender1 ...
Removing libxext6 ...
Purging configuration files for libxext6 ...
+Removing libx11-6 ...
+Purging configuration files for libx11-6 ...
+Removing libx11-data ...
Removing libxcb-shm0 ...
Purging configuration files for libxcb-shm0 ...
Removing libxcb-render0 ...
Purging configuration files for libxcb-render0 ...
-Removing gettext ...
-Removing libcroco3 ...
-Purging configuration files for libcroco3 ...
-Removing libxml2 ...
-Purging configuration files for libxml2 ...
-Removing libice6 ...
-Purging configuration files for libice6 ...
-Removing libxrender1 ...
-Purging configuration files for libxrender1 ...
-Removing gettext-base ...
-Removing libfontconfig1 ...
-Purging configuration files for libfontconfig1 ...
-Removing libunistring0 ...
-Purging configuration files for libunistring0 ...
-Removing libexpat1 ...
-Purging configuration files for libexpat1 ...
-Removing libx11-6 ...
-Purging configuration files for libx11-6 ...
-Removing libx11-data ...
-Removing libglib2.0-0 ...
-Purging configuration files for libglib2.0-0 ...
-Removing fontconfig-config ...
-Purging configuration files for fontconfig-config ...
-Removing ttf-dejavu-core ...
-Removing x11-common ...
-All runlevel operations denied by policy
-invoke-rc.d: policy-rc.d denied execution of stop.
-Purging configuration files for x11-common ...
-Removing libfreetype6 ...
-Purging configuration files for libfreetype6 ...
Removing libxcb1 ...
Purging configuration files for libxcb1 ...
-Removing ucf ...
-Purging configuration files for ucf ...
Removing libxau6 ...
Purging configuration files for libxau6 ...
Removing libxdmcp6 ...
Purging configuration files for libxdmcp6 ...
+Removing sbuild-build-depends-core-dummy ...
+Removing tcl8.5 ...
+Purging configuration files for tcl8.5 ...
+Removing unzip ...
+Purging configuration files for unzip ...
+Removing x11-common ...
+All runlevel operations denied by policy
+invoke-rc.d: policy-rc.d denied execution of stop.
+Purging configuration files for x11-common ...
+insserv: warning: script 'K01random-egd' missing LSB tags and overrides
+insserv: warning: script 'random-egd' missing LSB tags and overrides
+insserv: warning: script 'K01random-egd' missing LSB tags and overrides
+insserv: warning: script 'random-egd' missing LSB tags and overrides
+dpkg: warning: while removing x11-common, directory '/etc/X11' not empty so not removed.
+Removing xdg-utils ...
+Removing zip ...
+Removing zlib1g-dev ...
Processing triggers for man-db ...
Processing triggers for install-info ...
-────────────────────────────────────────────────────────────────────────────────
-Finished at 20110603-1131
-Build needed 00:21:22, 5080k disc space
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Summary │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+Architecture: hurd-i386
+Build-Space: 5068
+Build-Time: 168
+Distribution: sid
+Install-Time: 285
+Job: r-bioc-limma_3.8.3-1
+Package: r-bioc-limma
+Package-Time: 579
+Source-Version: 3.8.3-1
+Space: 5068
+Status: successful
+Version: 3.8.3-1
+────────────────────────────────────────────────────────────────────────────────
+Finished at 20110816-0840
+Build needed 00:09:39, 5068k disc space
diff --git a/i386.log b/i386.log
index 5e6551a..2504cd6 100644
--- a/i386.log
+++ b/i386.log
@@ -1,67 +1,68 @@
-From buildd at murphy.debian.org Thu Jun 02 13:27:46 2011
-Return-path: <buildd at murphy.debian.org>
-Received: from kokkonen.debian.org ([2001:41b8:202:deb:1a1a:0:52c3:4b61])
+From buildd at biber.debian.org Sun Aug 14 12:38:09 2011
+Return-path: <buildd at biber.debian.org>
+Received: from merikanto.debian.org ([2001:858:2:2:216:35ff:fec4:a49a])
from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
- CN=kokkonen.debian.org,
- EMAIL=hostmaster at kokkonen.debian.org (verified)
+ CN=merikanto.debian.org,
+ EMAIL=hostmaster at merikanto.debian.org (verified)
by grieg.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
- (Exim 4.72) (envelope-from <buildd at murphy.debian.org>)
- id 1QS7wA-0006hZ-6e
- for logs at buildd.debian.org; Thu, 02 Jun 2011 13:27:46 +0000
-Received: from murphy.debian.org ([70.103.162.31])
+ (Exim 4.72) (envelope-from <buildd at biber.debian.org>)
+ id 1QsZxA-0000vg-Lh
+ for logs at buildd.debian.org; Sun, 14 Aug 2011 12:38:08 +0000
+Received: from biber.debian.org ([2001:648:2ffc:deb:214:22ff:feb2:1268])
from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
- CN=murphy.debian.org, EMAIL=hostmaster at murphy.debian.org (verified)
- by kokkonen.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
- (Exim 4.72) (envelope-from <buildd at murphy.debian.org>)
- id 1QS7w9-00047T-2C
- for logs at buildd.debian.org; Thu, 02 Jun 2011 13:27:45 +0000
-Received: from buildd by murphy.debian.org with local (Exim 4.72)
- (envelope-from <buildd at murphy.debian.org>)
- id 1QS7w6-0001yt-ST; Thu, 02 Jun 2011 13:27:42 +0000
-Message-Id: <E1QS7w6-0001yt-ST at murphy.debian.org>
+ CN=biber.debian.org, EMAIL=hostmaster at biber.debian.org (verified)
+ by merikanto.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
+ (Exim 4.72) (envelope-from <buildd at biber.debian.org>)
+ id 1QsZx9-0006dh-5D; Sun, 14 Aug 2011 12:38:07 +0000
+Received: from buildd by biber.debian.org with local (Exim 4.72)
+ (envelope-from <buildd at biber.debian.org>)
+ id 1QsZx7-0002e2-RQ; Sun, 14 Aug 2011 12:38:05 +0000
+Message-Id: <E1QsZx7-0002e2-RQ at biber.debian.org>
MIME-Version: 1.0
Content-Transfer-Encoding: binary
X-Mailer: MIME::Lite 3.027 (F2.77; B3.08; Q3.08)
-Date: Thu, 2 Jun 2011 13:27:42 +0000
-From: buildd on murphy <buildd at murphy.debian.org>
-To: logs at buildd.debian.org,buildd-admin at murphy.debian.org
-Subject: Log for successful build of r-bioc-limma_3.8.2-1 on i386 (dist=sid)
-Key-Id: 1C3F1E5E
+Date: Sun, 14 Aug 2011 12:38:05 +0000
+From: buildd on biber <buildd at biber.debian.org>
+To: kurt at roeckx.be,logs at buildd.debian.org
+Subject: Log for successful build of r-bioc-limma_3.8.3-1 on i386 (dist=sid)
+Key-Id: E4786BDC
Delivered-To: logs at buildd.debian.org
-sbuild (Debian sbuild) 0.61.0 (23 Feb 2011) on murphy.debian.org
+sbuild (Debian sbuild) 0.61.0 (23 Feb 2011) on biber.debian.org
╔══════════════════════════════════════════════════════════════════════════════╗
-║ r-bioc-limma 3.8.2-1 (i386) 02 Jun 2011 13:26 ║
+║ r-bioc-limma 3.8.3-1 (i386) 14 Aug 2011 12:35 ║
╚══════════════════════════════════════════════════════════════════════════════╝
Package: r-bioc-limma
-Version: 3.8.2-1
-Source Version: 3.8.2-1
+Version: 3.8.3-1
+Source Version: 3.8.3-1
Architecture: i386
-Hit http://incoming.debian.org sid InRelease
+Get:1 http://ftp.gr.debian.org unstable InRelease [146 kB]
+Get:2 http://ftp.gr.debian.org unstable/main Sources [5431 kB]
+Get:3 http://incoming.debian.org unstable InRelease [146 kB]
+Get:4 http://ftp.gr.debian.org unstable/contrib Sources [52.5 kB]
+Get:5 http://ftp.gr.debian.org unstable/non-free Sources [95.7 kB]
+Get:6 http://ftp.gr.debian.org unstable/main i386 Packages [7599 kB]
+Get:7 http://ftp.gr.debian.org unstable/contrib i386 Packages [68.2 kB]
+Ign http://ftp.gr.debian.org unstable/contrib TranslationIndex
+Get:8 http://ftp.gr.debian.org unstable/main TranslationIndex [2185 B]
+Ign http://ftp.gr.debian.org unstable/contrib Translation-en
Ign http://incoming.debian.org InRelease
-Get:1 http://incoming.debian.org Release.gpg [836 B]
-Hit http://ftp.us.debian.org sid InRelease
-Hit http://incoming.debian.org sid/main Sources/DiffIndex
-Hit http://incoming.debian.org sid/contrib Sources/DiffIndex
-Hit http://incoming.debian.org sid/main i386 Packages/DiffIndex
-Hit http://incoming.debian.org sid/contrib i386 Packages/DiffIndex
-Ign http://incoming.debian.org sid/contrib TranslationIndex
-Hit http://incoming.debian.org sid/main TranslationIndex
-Get:2 http://incoming.debian.org Release [1604 B]
-Hit http://ftp.us.debian.org sid/main Sources/DiffIndex
-Get:3 http://incoming.debian.org Sources [35.2 kB]
-Hit http://ftp.us.debian.org sid/contrib Sources/DiffIndex
-Hit http://ftp.us.debian.org sid/main i386 Packages/DiffIndex
-Hit http://ftp.us.debian.org sid/contrib i386 Packages/DiffIndex
-Ign http://ftp.us.debian.org sid/contrib TranslationIndex
-Hit http://ftp.us.debian.org sid/main TranslationIndex
-Get:4 http://incoming.debian.org Packages [360 kB]
-Ign http://ftp.us.debian.org sid/contrib Translation-en
-Ign http://incoming.debian.org sid/contrib Translation-en
+Get:9 http://incoming.debian.org Release.gpg [836 B]
+Get:10 http://incoming.debian.org unstable/main Sources [5431 kB]
+Get:11 http://incoming.debian.org unstable/contrib Sources [52.5 kB]
+Get:12 http://incoming.debian.org unstable/non-free Sources [95.7 kB]
+Get:13 http://incoming.debian.org unstable/main i386 Packages [7599 kB]
+Get:14 http://incoming.debian.org unstable/contrib i386 Packages [68.2 kB]
+Ign http://incoming.debian.org unstable/contrib TranslationIndex
+Get:15 http://incoming.debian.org unstable/main TranslationIndex [2185 B]
+Get:16 http://incoming.debian.org Release [1604 B]
+Get:17 http://incoming.debian.org Sources [24.6 kB]
+Get:18 http://incoming.debian.org Packages [108 kB]
+Ign http://incoming.debian.org unstable/contrib Translation-en
Ign http://incoming.debian.org Translation-en
-Fetched 398 kB in 4s (95.9 kB/s)
+Fetched 26.9 MB in 13s (1980 kB/s)
Reading package lists...
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -81,12 +82,12 @@ Reading package lists...
Building dependency tree...
Reading state information...
NOTICE: 'r-bioc-limma' packaging is maintained in the 'Git' version control system at:
-git://anonscm.debian.org/debian-med/r-bioc-limma.git
+git://git.debian.org/git/debian-med/r-bioc-limma.git
Need to get 921 kB of source archives.
-Get:1 http://incoming.debian.org/buildd-unstable/ r-bioc-limma 3.8.2-1 (dsc) [1931 B]
-Get:2 http://incoming.debian.org/buildd-unstable/ r-bioc-limma 3.8.2-1 (tar) [917 kB]
-Get:3 http://incoming.debian.org/buildd-unstable/ r-bioc-limma 3.8.2-1 (diff) [2158 B]
-Fetched 921 kB in 2s (319 kB/s)
+Get:1 http://incoming.debian.org/buildd-unstable/ r-bioc-limma 3.8.3-1 (dsc) [1931 B]
+Get:2 http://incoming.debian.org/buildd-unstable/ r-bioc-limma 3.8.3-1 (tar) [917 kB]
+Get:3 http://incoming.debian.org/buildd-unstable/ r-bioc-limma 3.8.3-1 (diff) [2212 B]
+Fetched 921 kB in 1s (482 kB/s)
Download complete and in download only mode
Check arch
@@ -100,7 +101,7 @@ Check arch
Build-Depends: build-essential, fakeroot
Checking for already installed dependencies...
build-essential: already installed (11.5)
-fakeroot: already installed (1.15.1-1)
+fakeroot: already installed (1.16-1)
Checking for dependency conflicts...
Installing positive dependencies:
Reading package lists...
@@ -120,40 +121,40 @@ Checking correctness of dependencies...
Build-Depends: base-files, base-passwd, bash, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, ncurses-base, ncurses-bin, perl-base, sed, login, sysvinit-utils, sysvinit, tar, bsdutils, mount, util-linux, libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 8), cdbs, r-base-dev (>= 2.10.0)
Checking for already installed dependencies...
-base-files: already installed (6.4)
-base-passwd: already installed (3.5.22)
+base-files: already installed (6.5)
+base-passwd: already installed (3.5.23)
bash: already installed (4.1-3)
coreutils: already installed (8.5-1)
dash: already installed (0.5.5.1-7.4)
-debianutils: already installed (4.0.1)
+debianutils: already installed (4.0.2)
diffutils: already installed (1:3.0-1)
dpkg: already installed (1.16.0.3)
-e2fsprogs: already installed (1.41.12-4)
+e2fsprogs: already installed (1.42~WIP-2011-07-02-1)
findutils: already installed (4.4.2-1+b1)
-grep: already installed (2.8-2)
-gzip: already installed (1.3.12-9)
+grep: already installed (2.9-1)
+gzip: already installed (1.4-1)
hostname: already installed (3.06)
ncurses-base: already installed (5.9-1)
ncurses-bin: already installed (5.9-1)
-perl-base: already installed (5.12.3-7)
+perl-base: already installed (5.12.4-4)
sed: already installed (4.2.1-9)
login: already installed (1:4.1.4.2+svn3283-3)
-sysvinit-utils: already installed (2.88dsf-13.7)
-sysvinit: already installed (2.88dsf-13.7)
+sysvinit-utils: already installed (2.88dsf-13.11)
+sysvinit: already installed (2.88dsf-13.11)
tar: already installed (1.25-3)
-bsdutils: already installed (1:2.17.2-9.1)
-mount: already installed (2.17.2-9.1)
-util-linux: already installed (2.17.2-9.1)
-libc6-dev: already installed (2.13-4)
-gcc: already installed (4:4.6.0-5 >= 4:4.4.3 is satisfied)
-g++: already installed (4:4.6.0-5 >= 4:4.4.3 is satisfied)
+bsdutils: already installed (1:2.19.1-5)
+mount: already installed (2.19.1-5)
+util-linux: already installed (2.19.1-5)
+libc6-dev: already installed (2.13-16)
+gcc: already installed (4:4.6.1-2 >= 4:4.4.3 is satisfied)
+g++: already installed (4:4.6.1-2 >= 4:4.4.3 is satisfied)
make: already installed (3.81-8.1)
dpkg-dev: already installed (1.16.0.3 >= 1.13.5 is satisfied)
debhelper: missing
-Using default version 8.1.6
+Using default version 8.9.4
cdbs: missing
r-base-dev: missing
-Using default version 2.13.0-2
+Using default version 2.13.1-1
Checking for dependency conflicts...
Installing positive dependencies: debhelper cdbs r-base-dev
Reading package lists...
@@ -164,7 +165,7 @@ The following extra packages will be installed:
gfortran gfortran-4.6 groff-base html2text intltool-debian libblas-dev
libblas3gf libbz2-dev libcairo2 libcroco3 libdatrie1 libexpat1
libfontconfig1 libfreetype6 libgfortran3 libglib2.0-0 libice6 libjpeg62
- libjpeg62-dev liblapack-dev liblapack3gf libmagic1 libncurses5-dev
+ libjpeg8 libjpeg8-dev liblapack-dev liblapack3gf libmagic1 libncurses5-dev
libpango1.0-0 libpaper-utils libpaper1 libpcre3 libpcre3-dev libpcrecpp0
libpipeline1 libpixman-1-0 libpng12-0 libpng12-dev libreadline-dev
libreadline6-dev libsm6 libthai-data libthai0 libtiff4 libunistring0
@@ -188,7 +189,7 @@ The following NEW packages will be installed:
gettext-base gfortran gfortran-4.6 groff-base html2text intltool-debian
libblas-dev libblas3gf libbz2-dev libcairo2 libcroco3 libdatrie1 libexpat1
libfontconfig1 libfreetype6 libgfortran3 libglib2.0-0 libice6 libjpeg62
- libjpeg62-dev liblapack-dev liblapack3gf libmagic1 libncurses5-dev
+ libjpeg8 libjpeg8-dev liblapack-dev liblapack3gf libmagic1 libncurses5-dev
libpango1.0-0 libpaper-utils libpaper1 libpcre3 libpcre3-dev libpcrecpp0
libpipeline1 libpixman-1-0 libpng12-0 libpng12-dev libreadline-dev
libreadline6-dev libsm6 libthai-data libthai0 libtiff4 libunistring0
@@ -196,268 +197,346 @@ The following NEW packages will be installed:
libxext6 libxft2 libxml2 libxrender1 libxss1 libxt6 man-db po-debconf
r-base-core r-base-dev tcl8.5 tk8.5 ttf-dejavu-core ucf unzip x11-common
xdg-utils zip zlib1g-dev
-0 upgraded, 75 newly installed, 0 to remove and 0 not upgraded.
-Need to get 3490 B/48.9 MB of archives.
-After this operation, 119 MB of additional disk space will be used.
-Get:1 http://ftp.us.debian.org/debian/ sid/main r-base-dev all 2.13.0-2 [3490 B]
+0 upgraded, 76 newly installed, 0 to remove and 0 not upgraded.
+Need to get 49.7 MB of archives.
+After this operation, 122 MB of additional disk space will be used.
+Get:1 http://ftp.gr.debian.org/debian/ unstable/main libpipeline1 i386 1.2.0-3 [37.6 kB]
+Get:2 http://ftp.gr.debian.org/debian/ unstable/main libpcre3 i386 8.12-4 [223 kB]
+Get:3 http://ftp.gr.debian.org/debian/ unstable/main libdatrie1 i386 0.2.4-3 [28.6 kB]
+Get:4 http://ftp.gr.debian.org/debian/ unstable/main libexpat1 i386 2.0.1-7 [138 kB]
+Get:5 http://ftp.gr.debian.org/debian/ unstable/main libfreetype6 i386 2.4.6-1 [437 kB]
+Get:6 http://ftp.gr.debian.org/debian/ unstable/main ucf all 3.0025+nmu2 [70.6 kB]
+Get:7 http://ftp.gr.debian.org/debian/ unstable/main ttf-dejavu-core all 2.33-1 [1550 kB]
+Get:8 http://ftp.gr.debian.org/debian/ unstable/main fontconfig-config all 2.8.0-3 [221 kB]
+Get:9 http://ftp.gr.debian.org/debian/ unstable/main libfontconfig1 i386 2.8.0-3 [285 kB]
+Get:10 http://ftp.gr.debian.org/debian/ unstable/main libgfortran3 i386 4.6.1-6 [355 kB]
+Get:11 http://ftp.gr.debian.org/debian/ unstable/main x11-common all 1:7.6+7 [275 kB]
+Get:12 http://ftp.gr.debian.org/debian/ unstable/main libice6 i386 2:1.0.7-2 [55.2 kB]
+Get:13 http://ftp.gr.debian.org/debian/ unstable/main libpixman-1-0 i386 0.22.2-1 [371 kB]
+Get:14 http://ftp.gr.debian.org/debian/ unstable/main libpng12-0 i386 1.2.46-3 [192 kB]
+Get:15 http://ftp.gr.debian.org/debian/ unstable/main libxau6 i386 1:1.0.6-3 [16.9 kB]
+Get:16 http://ftp.gr.debian.org/debian/ unstable/main libxdmcp6 i386 1:1.1.0-3 [23.3 kB]
+Get:17 http://ftp.gr.debian.org/debian/ unstable/main libxcb1 i386 1.7-3 [48.8 kB]
+Get:18 http://ftp.gr.debian.org/debian/ unstable/main libx11-data all 2:1.4.4-1 [183 kB]
+Get:19 http://ftp.gr.debian.org/debian/ unstable/main libx11-6 i386 2:1.4.4-1 [895 kB]
+Get:20 http://ftp.gr.debian.org/debian/ unstable/main libxcb-render0 i386 1.7-3 [17.3 kB]
+Get:21 http://ftp.gr.debian.org/debian/ unstable/main libxcb-shm0 i386 1.7-3 [9572 B]
+Get:22 http://ftp.gr.debian.org/debian/ unstable/main libxrender1 i386 1:0.9.6-2 [31.1 kB]
+Get:23 http://ftp.gr.debian.org/debian/ unstable/main libcairo2 i386 1.10.2-6.1 [971 kB]
+Get:24 http://ftp.gr.debian.org/debian/ unstable/main libglib2.0-0 i386 2.28.6-1 [1503 kB]
+Get:25 http://ftp.gr.debian.org/debian/ unstable/main libthai-data all 0.1.15-2 [201 kB]
+Get:26 http://ftp.gr.debian.org/debian/ unstable/main libthai0 i386 0.1.15-2 [43.3 kB]
+Get:27 http://ftp.gr.debian.org/debian/ unstable/main libxft2 i386 2.2.0-3 [58.4 kB]
+Get:28 http://ftp.gr.debian.org/debian/ unstable/main fontconfig i386 2.8.0-3 [335 kB]
+Get:29 http://ftp.gr.debian.org/debian/ unstable/main libpango1.0-0 i386 1.28.4-2 [439 kB]
+Get:30 http://ftp.gr.debian.org/debian/ unstable/main libpcrecpp0 i386 8.12-4 [113 kB]
+Get:31 http://ftp.gr.debian.org/debian/ unstable/main libsm6 i386 2:1.2.0-2 [29.1 kB]
+Get:32 http://ftp.gr.debian.org/debian/ unstable/main libxext6 i386 2:1.3.0-3 [52.4 kB]
+Get:33 http://ftp.gr.debian.org/debian/ unstable/main libxss1 i386 1:1.2.1-2 [16.7 kB]
+Get:34 http://ftp.gr.debian.org/debian/ unstable/main libxt6 i386 1:1.1.1-2 [200 kB]
+Get:35 http://ftp.gr.debian.org/debian/ unstable/main bsdmainutils i386 8.2.3 [203 kB]
+Get:36 http://ftp.gr.debian.org/debian/ unstable/main groff-base i386 1.21-6 [1127 kB]
+Get:37 http://ftp.gr.debian.org/debian/ unstable/main man-db i386 2.6.0.2-2 [1013 kB]
+Get:38 http://ftp.gr.debian.org/debian/ unstable/main libmagic1 i386 5.04-5+b1 [233 kB]
+Get:39 http://ftp.gr.debian.org/debian/ unstable/main file i386 5.04-5+b1 [49.4 kB]
+Get:40 http://ftp.gr.debian.org/debian/ unstable/main gettext-base i386 0.18.1.1-4 [133 kB]
+Get:41 http://ftp.gr.debian.org/debian/ unstable/main libxml2 i386 2.7.8.dfsg-4 [882 kB]
+Get:42 http://ftp.gr.debian.org/debian/ unstable/main html2text i386 1.3.2a-15 [101 kB]
+Get:43 http://ftp.gr.debian.org/debian/ unstable/main libcroco3 i386 0.6.2-1 [116 kB]
+Get:44 http://ftp.gr.debian.org/debian/ unstable/main libunistring0 i386 0.9.3-4 [431 kB]
+Get:45 http://ftp.gr.debian.org/debian/ unstable/main gettext i386 0.18.1.1-4 [2024 kB]
+Get:46 http://ftp.gr.debian.org/debian/ unstable/main intltool-debian all 0.35.0+20060710.1 [30.8 kB]
+Get:47 http://ftp.gr.debian.org/debian/ unstable/main po-debconf all 1.0.16+nmu1 [223 kB]
+Get:48 http://ftp.gr.debian.org/debian/ unstable/main debhelper all 8.9.4 [561 kB]
+Get:49 http://ftp.gr.debian.org/debian/ unstable/main cdbs all 0.4.96 [75.8 kB]
+Get:50 http://ftp.gr.debian.org/debian/ unstable/main dpatch all 2.0.31 [92.3 kB]
+Get:51 http://ftp.gr.debian.org/debian/ unstable/main gfortran-4.6 i386 4.6.1-6 [5350 kB]
+Get:52 http://ftp.gr.debian.org/debian/ unstable/main gfortran i386 4:4.6.1-2 [1124 B]
+Get:53 http://ftp.gr.debian.org/debian/ unstable/main libblas3gf i386 1.2.20110419-2 [210 kB]
+Get:54 http://ftp.gr.debian.org/debian/ unstable/main libblas-dev i386 1.2.20110419-2 [212 kB]
+Get:55 http://ftp.gr.debian.org/debian/ unstable/main libbz2-dev i386 1.0.5-6 [31.6 kB]
+Get:56 http://ftp.gr.debian.org/debian/ unstable/main libjpeg62 i386 6b1-2 [93.7 kB]
+Get:57 http://ftp.gr.debian.org/debian/ unstable/main libjpeg8 i386 8c-2 [131 kB]
+Get:58 http://ftp.gr.debian.org/debian/ unstable/main libjpeg8-dev i386 8c-2 [231 kB]
+Get:59 http://ftp.gr.debian.org/debian/ unstable/main liblapack3gf i386 3.3.1-1 [3245 kB]
+Get:60 http://ftp.gr.debian.org/debian/ unstable/main liblapack-dev i386 3.3.1-1 [3485 kB]
+Get:61 http://ftp.gr.debian.org/debian/ unstable/main libncurses5-dev i386 5.9-1 [467 kB]
+Get:62 http://ftp.gr.debian.org/debian/ unstable/main libpaper1 i386 1.1.24+nmu1 [21.6 kB]
+Get:63 http://ftp.gr.debian.org/debian/ unstable/main libpaper-utils i386 1.1.24+nmu1 [17.9 kB]
+Get:64 http://ftp.gr.debian.org/debian/ unstable/main libpcre3-dev i386 8.12-4 [303 kB]
+Get:65 http://ftp.gr.debian.org/debian/ unstable/main zlib1g-dev i386 1:1.2.3.4.dfsg-3 [186 kB]
+Get:66 http://ftp.gr.debian.org/debian/ unstable/main libpng12-dev i386 1.2.46-3 [265 kB]
+Get:67 http://ftp.gr.debian.org/debian/ unstable/main libreadline6-dev i386 6.2-2 [247 kB]
+Get:68 http://ftp.gr.debian.org/debian/ unstable/main libreadline-dev i386 6.2-2 [878 B]
+Get:69 http://ftp.gr.debian.org/debian/ unstable/main libtiff4 i386 3.9.5-1 [187 kB]
+Get:70 http://ftp.gr.debian.org/debian/ unstable/main zip i386 3.0-4 [327 kB]
+Get:71 http://ftp.gr.debian.org/debian/ unstable/main unzip i386 6.0-5 [183 kB]
+Get:72 http://ftp.gr.debian.org/debian/ unstable/main xdg-utils all 1.1.0~rc1-2 [70.2 kB]
+Get:73 http://ftp.gr.debian.org/debian/ unstable/main tcl8.5 i386 8.5.10-1 [1637 kB]
+Get:74 http://ftp.gr.debian.org/debian/ unstable/main tk8.5 i386 8.5.10-1 [1178 kB]
+Get:75 http://ftp.gr.debian.org/debian/ unstable/main r-base-core i386 2.13.1-1 [14.9 MB]
+Get:76 http://ftp.gr.debian.org/debian/ unstable/main r-base-dev all 2.13.1-1 [3490 B]
debconf: delaying package configuration, since apt-utils is not installed
-Fetched 3490 B in 0s (7276 B/s)
+Fetched 49.7 MB in 4s (10.3 MB/s)
+Selecting previously deselected package libpipeline1.
+(Reading database ... 10725 files and directories currently installed.)
+Unpacking libpipeline1 (from .../libpipeline1_1.2.0-3_i386.deb) ...
+Selecting previously deselected package libpcre3.
+Unpacking libpcre3 (from .../libpcre3_8.12-4_i386.deb) ...
+Selecting previously deselected package libdatrie1.
+Unpacking libdatrie1 (from .../libdatrie1_0.2.4-3_i386.deb) ...
+Selecting previously deselected package libexpat1.
+Unpacking libexpat1 (from .../libexpat1_2.0.1-7_i386.deb) ...
+Selecting previously deselected package libfreetype6.
+Unpacking libfreetype6 (from .../libfreetype6_2.4.6-1_i386.deb) ...
+Selecting previously deselected package ucf.
+Unpacking ucf (from .../ucf_3.0025+nmu2_all.deb) ...
+Moving old data out of the way
+Selecting previously deselected package ttf-dejavu-core.
+Unpacking ttf-dejavu-core (from .../ttf-dejavu-core_2.33-1_all.deb) ...
+Selecting previously deselected package fontconfig-config.
+Unpacking fontconfig-config (from .../fontconfig-config_2.8.0-3_all.deb) ...
+Selecting previously deselected package libfontconfig1.
+Unpacking libfontconfig1 (from .../libfontconfig1_2.8.0-3_i386.deb) ...
+Selecting previously deselected package libgfortran3.
+Unpacking libgfortran3 (from .../libgfortran3_4.6.1-6_i386.deb) ...
+Selecting previously deselected package x11-common.
+Unpacking x11-common (from .../x11-common_1%3a7.6+7_all.deb) ...
+Selecting previously deselected package libice6.
+Unpacking libice6 (from .../libice6_2%3a1.0.7-2_i386.deb) ...
+Selecting previously deselected package libpixman-1-0.
+Unpacking libpixman-1-0 (from .../libpixman-1-0_0.22.2-1_i386.deb) ...
+Selecting previously deselected package libpng12-0.
+Unpacking libpng12-0 (from .../libpng12-0_1.2.46-3_i386.deb) ...
+Selecting previously deselected package libxau6.
+Unpacking libxau6 (from .../libxau6_1%3a1.0.6-3_i386.deb) ...
+Selecting previously deselected package libxdmcp6.
+Unpacking libxdmcp6 (from .../libxdmcp6_1%3a1.1.0-3_i386.deb) ...
+Selecting previously deselected package libxcb1.
+Unpacking libxcb1 (from .../libxcb1_1.7-3_i386.deb) ...
+Selecting previously deselected package libx11-data.
+Unpacking libx11-data (from .../libx11-data_2%3a1.4.4-1_all.deb) ...
+Selecting previously deselected package libx11-6.
+Unpacking libx11-6 (from .../libx11-6_2%3a1.4.4-1_i386.deb) ...
+Selecting previously deselected package libxcb-render0.
+Unpacking libxcb-render0 (from .../libxcb-render0_1.7-3_i386.deb) ...
+Selecting previously deselected package libxcb-shm0.
+Unpacking libxcb-shm0 (from .../libxcb-shm0_1.7-3_i386.deb) ...
+Selecting previously deselected package libxrender1.
+Unpacking libxrender1 (from .../libxrender1_1%3a0.9.6-2_i386.deb) ...
+Selecting previously deselected package libcairo2.
+Unpacking libcairo2 (from .../libcairo2_1.10.2-6.1_i386.deb) ...
+Selecting previously deselected package libglib2.0-0.
+Unpacking libglib2.0-0 (from .../libglib2.0-0_2.28.6-1_i386.deb) ...
+Selecting previously deselected package libthai-data.
+Unpacking libthai-data (from .../libthai-data_0.1.15-2_all.deb) ...
+Selecting previously deselected package libthai0.
+Unpacking libthai0 (from .../libthai0_0.1.15-2_i386.deb) ...
+Selecting previously deselected package libxft2.
+Unpacking libxft2 (from .../libxft2_2.2.0-3_i386.deb) ...
+Selecting previously deselected package fontconfig.
+Unpacking fontconfig (from .../fontconfig_2.8.0-3_i386.deb) ...
+Selecting previously deselected package libpango1.0-0.
+Unpacking libpango1.0-0 (from .../libpango1.0-0_1.28.4-2_i386.deb) ...
+Selecting previously deselected package libpcrecpp0.
+Unpacking libpcrecpp0 (from .../libpcrecpp0_8.12-4_i386.deb) ...
+Selecting previously deselected package libsm6.
+Unpacking libsm6 (from .../libsm6_2%3a1.2.0-2_i386.deb) ...
+Selecting previously deselected package libxext6.
+Unpacking libxext6 (from .../libxext6_2%3a1.3.0-3_i386.deb) ...
+Selecting previously deselected package libxss1.
+Unpacking libxss1 (from .../libxss1_1%3a1.2.1-2_i386.deb) ...
+Selecting previously deselected package libxt6.
+Unpacking libxt6 (from .../libxt6_1%3a1.1.1-2_i386.deb) ...
Selecting previously deselected package bsdmainutils.
-(Reading database ... 10850 files and directories currently installed.)
-Unpacking bsdmainutils (from .../bsdmainutils_8.2.2_i386.deb) ...
+Unpacking bsdmainutils (from .../bsdmainutils_8.2.3_i386.deb) ...
Selecting previously deselected package groff-base.
-Unpacking groff-base (from .../groff-base_1.21-5_i386.deb) ...
-Selecting previously deselected package libpipeline1.
-Unpacking libpipeline1 (from .../libpipeline1_1.2.0-2_i386.deb) ...
+Unpacking groff-base (from .../groff-base_1.21-6_i386.deb) ...
Selecting previously deselected package man-db.
-Unpacking man-db (from .../man-db_2.6.0.2-1_i386.deb) ...
+Unpacking man-db (from .../man-db_2.6.0.2-2_i386.deb) ...
Selecting previously deselected package libmagic1.
Unpacking libmagic1 (from .../libmagic1_5.04-5+b1_i386.deb) ...
Selecting previously deselected package file.
Unpacking file (from .../file_5.04-5+b1_i386.deb) ...
Selecting previously deselected package gettext-base.
-Unpacking gettext-base (from .../gettext-base_0.18.1.1-3_i386.deb) ...
-Selecting previously deselected package libpcre3.
-Unpacking libpcre3 (from .../libpcre3_8.12-3_i386.deb) ...
+Unpacking gettext-base (from .../gettext-base_0.18.1.1-4_i386.deb) ...
Selecting previously deselected package libxml2.
-Unpacking libxml2 (from .../libxml2_2.7.8.dfsg-2+b1_i386.deb) ...
-Selecting previously deselected package ucf.
-Unpacking ucf (from .../ucf_3.0025+nmu2_all.deb) ...
-Moving old data out of the way
+Unpacking libxml2 (from .../libxml2_2.7.8.dfsg-4_i386.deb) ...
Selecting previously deselected package html2text.
Unpacking html2text (from .../html2text_1.3.2a-15_i386.deb) ...
-Selecting previously deselected package libglib2.0-0.
-Unpacking libglib2.0-0 (from .../libglib2.0-0_2.28.6-1_i386.deb) ...
Selecting previously deselected package libcroco3.
Unpacking libcroco3 (from .../libcroco3_0.6.2-1_i386.deb) ...
Selecting previously deselected package libunistring0.
Unpacking libunistring0 (from .../libunistring0_0.9.3-4_i386.deb) ...
Selecting previously deselected package gettext.
-Unpacking gettext (from .../gettext_0.18.1.1-3_i386.deb) ...
+Unpacking gettext (from .../gettext_0.18.1.1-4_i386.deb) ...
Selecting previously deselected package intltool-debian.
Unpacking intltool-debian (from .../intltool-debian_0.35.0+20060710.1_all.deb) ...
Selecting previously deselected package po-debconf.
Unpacking po-debconf (from .../po-debconf_1.0.16+nmu1_all.deb) ...
Selecting previously deselected package debhelper.
-Unpacking debhelper (from .../debhelper_8.1.6_all.deb) ...
+Unpacking debhelper (from .../debhelper_8.9.4_all.deb) ...
Selecting previously deselected package cdbs.
-Unpacking cdbs (from .../archives/cdbs_0.4.94_all.deb) ...
+Unpacking cdbs (from .../archives/cdbs_0.4.96_all.deb) ...
Selecting previously deselected package dpatch.
Unpacking dpatch (from .../archives/dpatch_2.0.31_all.deb) ...
-Selecting previously deselected package libexpat1.
-Unpacking libexpat1 (from .../libexpat1_2.0.1-7_i386.deb) ...
-Selecting previously deselected package libfreetype6.
-Unpacking libfreetype6 (from .../libfreetype6_2.4.4-1_i386.deb) ...
-Selecting previously deselected package ttf-dejavu-core.
-Unpacking ttf-dejavu-core (from .../ttf-dejavu-core_2.33-1_all.deb) ...
-Selecting previously deselected package fontconfig-config.
-Unpacking fontconfig-config (from .../fontconfig-config_2.8.0-2.2_all.deb) ...
-Selecting previously deselected package libfontconfig1.
-Unpacking libfontconfig1 (from .../libfontconfig1_2.8.0-2.2_i386.deb) ...
-Selecting previously deselected package fontconfig.
-Unpacking fontconfig (from .../fontconfig_2.8.0-2.2_i386.deb) ...
-Selecting previously deselected package libgfortran3.
-Unpacking libgfortran3 (from .../libgfortran3_4.6.0-10_i386.deb) ...
Selecting previously deselected package gfortran-4.6.
-Unpacking gfortran-4.6 (from .../gfortran-4.6_4.6.0-10_i386.deb) ...
+Unpacking gfortran-4.6 (from .../gfortran-4.6_4.6.1-6_i386.deb) ...
Selecting previously deselected package gfortran.
-Unpacking gfortran (from .../gfortran_4%3a4.6.0-5_i386.deb) ...
+Unpacking gfortran (from .../gfortran_4%3a4.6.1-2_i386.deb) ...
Selecting previously deselected package libblas3gf.
-Unpacking libblas3gf (from .../libblas3gf_1.2-8_i386.deb) ...
+Unpacking libblas3gf (from .../libblas3gf_1.2.20110419-2_i386.deb) ...
Selecting previously deselected package libblas-dev.
-Unpacking libblas-dev (from .../libblas-dev_1.2-8_i386.deb) ...
+Unpacking libblas-dev (from .../libblas-dev_1.2.20110419-2_i386.deb) ...
Selecting previously deselected package libbz2-dev.
Unpacking libbz2-dev (from .../libbz2-dev_1.0.5-6_i386.deb) ...
-Selecting previously deselected package libpixman-1-0.
-Unpacking libpixman-1-0 (from .../libpixman-1-0_0.21.8-1_i386.deb) ...
-Selecting previously deselected package libpng12-0.
-Unpacking libpng12-0 (from .../libpng12-0_1.2.44-2_i386.deb) ...
-Selecting previously deselected package libxau6.
-Unpacking libxau6 (from .../libxau6_1%3a1.0.6-1_i386.deb) ...
-Selecting previously deselected package libxdmcp6.
-Unpacking libxdmcp6 (from .../libxdmcp6_1%3a1.1.0-1_i386.deb) ...
-Selecting previously deselected package libxcb1.
-Unpacking libxcb1 (from .../libxcb1_1.7-2_i386.deb) ...
-Selecting previously deselected package libx11-data.
-Unpacking libx11-data (from .../libx11-data_2%3a1.4.3-1_all.deb) ...
-Selecting previously deselected package libx11-6.
-Unpacking libx11-6 (from .../libx11-6_2%3a1.4.3-1_i386.deb) ...
-Selecting previously deselected package libxcb-render0.
-Unpacking libxcb-render0 (from .../libxcb-render0_1.7-2_i386.deb) ...
-Selecting previously deselected package libxcb-shm0.
-Unpacking libxcb-shm0 (from .../libxcb-shm0_1.7-2_i386.deb) ...
-Selecting previously deselected package libxrender1.
-Unpacking libxrender1 (from .../libxrender1_1%3a0.9.6-1_i386.deb) ...
-Selecting previously deselected package libcairo2.
-Unpacking libcairo2 (from .../libcairo2_1.10.2-6_i386.deb) ...
-Selecting previously deselected package libdatrie1.
-Unpacking libdatrie1 (from .../libdatrie1_0.2.4-2_i386.deb) ...
-Selecting previously deselected package x11-common.
-Unpacking x11-common (from .../x11-common_1%3a7.6+6_all.deb) ...
-Selecting previously deselected package libice6.
-Unpacking libice6 (from .../libice6_2%3a1.0.7-1_i386.deb) ...
Selecting previously deselected package libjpeg62.
-Unpacking libjpeg62 (from .../libjpeg62_6b1-1_i386.deb) ...
-Selecting previously deselected package libjpeg62-dev.
-Unpacking libjpeg62-dev (from .../libjpeg62-dev_6b1-1_i386.deb) ...
+Unpacking libjpeg62 (from .../libjpeg62_6b1-2_i386.deb) ...
+Selecting previously deselected package libjpeg8.
+Unpacking libjpeg8 (from .../libjpeg8_8c-2_i386.deb) ...
+Selecting previously deselected package libjpeg8-dev.
+Unpacking libjpeg8-dev (from .../libjpeg8-dev_8c-2_i386.deb) ...
Selecting previously deselected package liblapack3gf.
-Unpacking liblapack3gf (from .../liblapack3gf_3.3.0-4_i386.deb) ...
+Unpacking liblapack3gf (from .../liblapack3gf_3.3.1-1_i386.deb) ...
Selecting previously deselected package liblapack-dev.
-Unpacking liblapack-dev (from .../liblapack-dev_3.3.0-4_i386.deb) ...
+Unpacking liblapack-dev (from .../liblapack-dev_3.3.1-1_i386.deb) ...
Selecting previously deselected package libncurses5-dev.
Unpacking libncurses5-dev (from .../libncurses5-dev_5.9-1_i386.deb) ...
-Selecting previously deselected package libthai-data.
-Unpacking libthai-data (from .../libthai-data_0.1.15-1_all.deb) ...
-Selecting previously deselected package libthai0.
-Unpacking libthai0 (from .../libthai0_0.1.15-1_i386.deb) ...
-Selecting previously deselected package libxft2.
-Unpacking libxft2 (from .../libxft2_2.2.0-2_i386.deb) ...
-Selecting previously deselected package libpango1.0-0.
-Unpacking libpango1.0-0 (from .../libpango1.0-0_1.28.3-6_i386.deb) ...
Selecting previously deselected package libpaper1.
Unpacking libpaper1 (from .../libpaper1_1.1.24+nmu1_i386.deb) ...
Selecting previously deselected package libpaper-utils.
Unpacking libpaper-utils (from .../libpaper-utils_1.1.24+nmu1_i386.deb) ...
-Selecting previously deselected package libpcrecpp0.
-Unpacking libpcrecpp0 (from .../libpcrecpp0_8.12-3_i386.deb) ...
Selecting previously deselected package libpcre3-dev.
-Unpacking libpcre3-dev (from .../libpcre3-dev_8.12-3_i386.deb) ...
+Unpacking libpcre3-dev (from .../libpcre3-dev_8.12-4_i386.deb) ...
Selecting previously deselected package zlib1g-dev.
Unpacking zlib1g-dev (from .../zlib1g-dev_1%3a1.2.3.4.dfsg-3_i386.deb) ...
Selecting previously deselected package libpng12-dev.
-Unpacking libpng12-dev (from .../libpng12-dev_1.2.44-2_i386.deb) ...
+Unpacking libpng12-dev (from .../libpng12-dev_1.2.46-3_i386.deb) ...
Selecting previously deselected package libreadline6-dev.
Unpacking libreadline6-dev (from .../libreadline6-dev_6.2-2_i386.deb) ...
Selecting previously deselected package libreadline-dev.
Unpacking libreadline-dev (from .../libreadline-dev_6.2-2_i386.deb) ...
-Selecting previously deselected package libsm6.
-Unpacking libsm6 (from .../libsm6_2%3a1.2.0-1_i386.deb) ...
Selecting previously deselected package libtiff4.
Unpacking libtiff4 (from .../libtiff4_3.9.5-1_i386.deb) ...
-Selecting previously deselected package libxext6.
-Unpacking libxext6 (from .../libxext6_2%3a1.3.0-1_i386.deb) ...
-Selecting previously deselected package libxss1.
-Unpacking libxss1 (from .../libxss1_1%3a1.2.1-1_i386.deb) ...
-Selecting previously deselected package libxt6.
-Unpacking libxt6 (from .../libxt6_1%3a1.1.1-1_i386.deb) ...
Selecting previously deselected package zip.
-Unpacking zip (from .../archives/zip_3.0-3_i386.deb) ...
+Unpacking zip (from .../archives/zip_3.0-4_i386.deb) ...
Selecting previously deselected package unzip.
-Unpacking unzip (from .../archives/unzip_6.0-4_i386.deb) ...
+Unpacking unzip (from .../archives/unzip_6.0-5_i386.deb) ...
Selecting previously deselected package xdg-utils.
Unpacking xdg-utils (from .../xdg-utils_1.1.0~rc1-2_all.deb) ...
Selecting previously deselected package tcl8.5.
-Unpacking tcl8.5 (from .../tcl8.5_8.5.9-2_i386.deb) ...
+Unpacking tcl8.5 (from .../tcl8.5_8.5.10-1_i386.deb) ...
Selecting previously deselected package tk8.5.
-Unpacking tk8.5 (from .../tk8.5_8.5.9-2_i386.deb) ...
+Unpacking tk8.5 (from .../tk8.5_8.5.10-1_i386.deb) ...
Selecting previously deselected package r-base-core.
-Unpacking r-base-core (from .../r-base-core_2.13.0-2_i386.deb) ...
+Unpacking r-base-core (from .../r-base-core_2.13.1-1_i386.deb) ...
Selecting previously deselected package r-base-dev.
-Unpacking r-base-dev (from .../r-base-dev_2.13.0-2_all.deb) ...
-Setting up bsdmainutils (8.2.2) ...
+Unpacking r-base-dev (from .../r-base-dev_2.13.1-1_all.deb) ...
+Setting up libpipeline1 (1.2.0-3) ...
+Setting up libpcre3 (8.12-4) ...
+Setting up libdatrie1 (0.2.4-3) ...
+Setting up libexpat1 (2.0.1-7) ...
+Setting up libfreetype6 (2.4.6-1) ...
+Setting up ucf (3.0025+nmu2) ...
+Setting up ttf-dejavu-core (2.33-1) ...
+Setting up fontconfig-config (2.8.0-3) ...
+Setting up libfontconfig1 (2.8.0-3) ...
+Setting up libgfortran3 (4.6.1-6) ...
+Setting up x11-common (1:7.6+7) ...
+All runlevel operations denied by policy
+invoke-rc.d: policy-rc.d denied execution of start.
+Setting up libice6 (2:1.0.7-2) ...
+Setting up libpixman-1-0 (0.22.2-1) ...
+Setting up libpng12-0 (1.2.46-3) ...
+Setting up libxau6 (1:1.0.6-3) ...
+Setting up libxdmcp6 (1:1.1.0-3) ...
+Setting up libxcb1 (1.7-3) ...
+Setting up libx11-data (2:1.4.4-1) ...
+Setting up libx11-6 (2:1.4.4-1) ...
+Setting up libxcb-render0 (1.7-3) ...
+Setting up libxcb-shm0 (1.7-3) ...
+Setting up libxrender1 (1:0.9.6-2) ...
+Setting up libcairo2 (1.10.2-6.1) ...
+Setting up libglib2.0-0 (2.28.6-1) ...
+No schema files found: doing nothing.
+Setting up libthai-data (0.1.15-2) ...
+Setting up libthai0 (0.1.15-2) ...
+Setting up libxft2 (2.2.0-3) ...
+Setting up fontconfig (2.8.0-3) ...
+Cleaning up old fontconfig caches... done.
+Regenerating fonts cache... done.
+Setting up libpango1.0-0 (1.28.4-2) ...
+Setting up libpcrecpp0 (8.12-4) ...
+Setting up libsm6 (2:1.2.0-2) ...
+Setting up libxext6 (2:1.3.0-3) ...
+Setting up libxss1 (1:1.2.1-2) ...
+Setting up libxt6 (1:1.1.1-2) ...
+Setting up bsdmainutils (8.2.3) ...
update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode.
update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode.
-Setting up groff-base (1.21-5) ...
-Setting up libpipeline1 (1.2.0-2) ...
-Setting up man-db (2.6.0.2-1) ...
+Setting up groff-base (1.21-6) ...
+Setting up man-db (2.6.0.2-2) ...
Building database of manual pages ...
Setting up libmagic1 (5.04-5+b1) ...
Setting up file (5.04-5+b1) ...
-Setting up gettext-base (0.18.1.1-3) ...
-Setting up libpcre3 (8.12-3) ...
-Setting up libxml2 (2.7.8.dfsg-2+b1) ...
-Setting up ucf (3.0025+nmu2) ...
+Setting up gettext-base (0.18.1.1-4) ...
+Setting up libxml2 (2.7.8.dfsg-4) ...
Setting up html2text (1.3.2a-15) ...
-Setting up libglib2.0-0 (2.28.6-1) ...
-No schema files found: doing nothing.
Setting up libcroco3 (0.6.2-1) ...
Setting up libunistring0 (0.9.3-4) ...
-Setting up gettext (0.18.1.1-3) ...
+Setting up gettext (0.18.1.1-4) ...
Setting up intltool-debian (0.35.0+20060710.1) ...
Setting up po-debconf (1.0.16+nmu1) ...
-Setting up debhelper (8.1.6) ...
-Setting up cdbs (0.4.94) ...
+Setting up debhelper (8.9.4) ...
+Setting up cdbs (0.4.96) ...
Setting up dpatch (2.0.31) ...
-Setting up libexpat1 (2.0.1-7) ...
-Setting up libfreetype6 (2.4.4-1) ...
-Setting up ttf-dejavu-core (2.33-1) ...
-Setting up fontconfig-config (2.8.0-2.2) ...
-Setting up libfontconfig1 (2.8.0-2.2) ...
-Setting up fontconfig (2.8.0-2.2) ...
-Cleaning up old fontconfig caches... done.
-Regenerating fonts cache... done.
-Setting up libgfortran3 (4.6.0-10) ...
-Setting up gfortran-4.6 (4.6.0-10) ...
-Setting up gfortran (4:4.6.0-5) ...
+Setting up gfortran-4.6 (4.6.1-6) ...
+Setting up gfortran (4:4.6.1-2) ...
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode.
-Setting up libblas3gf (1.2-8) ...
+Setting up libblas3gf (1.2.20110419-2) ...
update-alternatives: using /usr/lib/libblas/libblas.so.3gf to provide /usr/lib/libblas.so.3gf (libblas.so.3gf) in auto mode.
-Setting up libblas-dev (1.2-8) ...
+Setting up libblas-dev (1.2.20110419-2) ...
update-alternatives: using /usr/lib/libblas/libblas.so to provide /usr/lib/libblas.so (libblas.so) in auto mode.
Setting up libbz2-dev (1.0.5-6) ...
-Setting up libpixman-1-0 (0.21.8-1) ...
-Setting up libpng12-0 (1.2.44-2) ...
-Setting up libxau6 (1:1.0.6-1) ...
-Setting up libxdmcp6 (1:1.1.0-1) ...
-Setting up libxcb1 (1.7-2) ...
-Setting up libx11-data (2:1.4.3-1) ...
-Setting up libx11-6 (2:1.4.3-1) ...
-Setting up libxcb-render0 (1.7-2) ...
-Setting up libxcb-shm0 (1.7-2) ...
-Setting up libxrender1 (1:0.9.6-1) ...
-Setting up libcairo2 (1.10.2-6) ...
-Setting up libdatrie1 (0.2.4-2) ...
-Setting up x11-common (1:7.6+6) ...
-All runlevel operations denied by policy
-invoke-rc.d: policy-rc.d denied execution of start.
-Setting up libice6 (2:1.0.7-1) ...
-Setting up libjpeg62 (6b1-1) ...
-Setting up libjpeg62-dev (6b1-1) ...
-Setting up liblapack3gf (3.3.0-4) ...
+Setting up libjpeg62 (6b1-2) ...
+Setting up libjpeg8 (8c-2) ...
+Setting up libjpeg8-dev (8c-2) ...
+Setting up liblapack3gf (3.3.1-1) ...
update-alternatives: using /usr/lib/lapack/liblapack.so.3gf to provide /usr/lib/liblapack.so.3gf (liblapack.so.3gf) in auto mode.
-Setting up liblapack-dev (3.3.0-4) ...
+Setting up liblapack-dev (3.3.1-1) ...
update-alternatives: using /usr/lib/lapack/liblapack.so to provide /usr/lib/liblapack.so (liblapack.so) in auto mode.
Setting up libncurses5-dev (5.9-1) ...
-Setting up libthai-data (0.1.15-1) ...
-Setting up libthai0 (0.1.15-1) ...
-Setting up libxft2 (2.2.0-2) ...
-Setting up libpango1.0-0 (1.28.3-6) ...
Setting up libpaper1 (1.1.24+nmu1) ...
Creating config file /etc/papersize with new version
Setting up libpaper-utils (1.1.24+nmu1) ...
-Setting up libpcrecpp0 (8.12-3) ...
-Setting up libpcre3-dev (8.12-3) ...
+Setting up libpcre3-dev (8.12-4) ...
Setting up zlib1g-dev (1:1.2.3.4.dfsg-3) ...
-Setting up libpng12-dev (1.2.44-2) ...
+Setting up libpng12-dev (1.2.46-3) ...
Setting up libreadline6-dev (6.2-2) ...
Setting up libreadline-dev (6.2-2) ...
-Setting up libsm6 (2:1.2.0-1) ...
Setting up libtiff4 (3.9.5-1) ...
-Setting up libxext6 (2:1.3.0-1) ...
-Setting up libxss1 (1:1.2.1-1) ...
-Setting up libxt6 (1:1.1.1-1) ...
-Setting up zip (3.0-3) ...
-Setting up unzip (6.0-4) ...
+Setting up zip (3.0-4) ...
+Setting up unzip (6.0-5) ...
Setting up xdg-utils (1.1.0~rc1-2) ...
-Setting up tcl8.5 (8.5.9-2) ...
+Setting up tcl8.5 (8.5.10-1) ...
update-alternatives: using /usr/bin/tclsh8.5 to provide /usr/bin/tclsh (tclsh) in auto mode.
-Setting up tk8.5 (8.5.9-2) ...
+Setting up tk8.5 (8.5.10-1) ...
update-alternatives: using /usr/bin/wish8.5 to provide /usr/bin/wish (wish) in auto mode.
-Setting up r-base-core (2.13.0-2) ...
+Setting up r-base-core (2.13.1-1) ...
Setting R_PAPERSIZE_USER default to 'a4'
Creating config file /etc/R/Renviron with new version
-Setting up r-base-dev (2.13.0-2) ...
+Setting up r-base-dev (2.13.1-1) ...
Removing negative dependencies:
Reading package lists...
Building dependency tree...
Reading state information...
0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
Checking correctness of dependencies...
-Kernel: Linux 2.6.32-5-686-bigmem i386 (i686)
-Toolchain package versions: binutils_2.21.51.20110523-1 dpkg-dev_1.16.0.3 g++-4.6_4.6.0-10 gcc-4.6_4.6.0-10 libc6-dev_2.13-4 libstdc++6_4.6.0-10 libstdc++6-4.6-dev_4.6.0-10 linux-libc-dev_2.6.39-1
-Package versions: apt_0.8.14.1 base-files_6.4 base-passwd_3.5.22 bash_4.1-3 binutils_2.21.51.20110523-1 bsdmainutils_8.2.2 bsdutils_1:2.17.2-9.1 build-essential_11.5 bzip2_1.0.5-6 cdbs_0.4.94 coreutils_8.5-1 cpp_4:4.6.0-5 cpp-4.6_4.6.0-10 dash_0.5.5.1-7.4 debconf_1.5.39 debfoster_2.7-1.1 debhelper_8.1.6 debian-archive-keyring_2010.08.28 debianutils_4.0.1 diffutils_1:3.0-1 dpatch_2.0.31 dpkg_1.16.0.3 dpkg-dev_1.16.0.3 e2fslibs_1.41.12-4 e2fsprogs_1.41.12-4 fakeroot_1.15.1-1 file_5.04-5+b1 findutils_4.4.2-1+b1 fontconfig_2.8.0-2.2 fontconfig-config_2.8.0-2.2 g++_4:4.6.0-5 g++-4.6_4.6.0-10 gawk_1:3.1.7.dfsg-5 gcc_4:4.6.0-5 gcc-4.6_4.6.0-10 gcc-4.6-base_4.6.0-10 gettext_0.18.1.1-3 gettext-base_0.18.1.1-3 gfortran_4:4.6.0-5 gfortran-4.6_4.6.0-10 gnupg_1.4.11-3 gpgv_1.4.11-3 grep_2.8-2 groff-base_1.21-5 gzip_1.3.12-9 hostname_3.06 html2text_1.3.2a-15 initscripts_2.88dsf-13.7 insserv_1.14.0-2.1 intltool-debian_0.35.0+20060710.1 libacl1_2.2.49-5 libattr1_1:2.4.44-3 libblas-dev_1.2-8 libblas3gf_1.2-8 libblkid1_2.17.2-9.1 libbz2-1.0_1.0.5-6 libbz2-dev_1.0.5-6 libc-bin_2.13-4 libc-dev-bin_2.13-4 libc6_2.13-4 libc6-dev_2.13-4 libcairo2_1.10.2-6 libcloog-ppl0_0.15.9-3 libcomerr2_1.41.12-4 libcroco3_0.6.2-1 libdatrie1_0.2.4-2 libdb5.1_5.1.25-10 libdpkg-perl_1.16.0.3 libexpat1_2.0.1-7 libfontconfig1_2.8.0-2.2 libfreetype6_2.4.4-1 libgc1c2_1:7.1-8 libgcc1_1:4.6.0-10 libgdbm3_1.8.3-9 libgfortran3_4.6.0-10 libglib2.0-0_2.28.6-1 libgmp10_2:5.0.1+dfsg-7 libgmpxx4ldbl_2:5.0.1+dfsg-7 libgomp1_4.6.0-10 libice6_2:1.0.7-1 libjpeg62_6b1-1 libjpeg62-dev_6b1-1 liblapack-dev_3.3.0-4 liblapack3gf_3.3.0-4 liblzma2_5.0.0-2 libmagic1_5.04-5+b1 libmpc2_0.9-3 libmpfr4_3.0.1-3 libncurses5_5.9-1 libncurses5-dev_5.9-1 libpam-modules_1.1.2-3 libpam-runtime_1.1.2-3 libpam0g_1.1.2-3 libpango1.0-0_1.28.3-6 libpaper-utils_1.1.24+nmu1 libpaper1_1.1.24+nmu1 libpcre3_8.12-3 libpcre3-dev_8.12-3 libpcrecpp0_8.12-3 libpipeline1_1.2.0-2 libpixman-1-0_0.21.8-1 libpng12-0_1.2.44-2 libpng12-dev_1.2.44-2 libppl-c4_0.11.2-3 libppl9_0.11.2-3 libpwl5_0.11.2-3 libquadmath0_4.6.0-10 libreadline-dev_6.2-2 libreadline6_6.2-2 libreadline6-dev_6.2-2 libselinux1_2.0.98-1+b1 libsepol1_2.0.42-1 libslang2_2.2.4-2 libsm6_2:1.2.0-1 libss2_1.41.12-4 libstdc++6_4.6.0-10 libstdc++6-4.6-dev_4.6.0-10 libthai-data_0.1.15-1 libthai0_0.1.15-1 libtiff4_3.9.5-1 libtimedate-perl_1.2000-1 libunistring0_0.9.3-4 libusb-0.1-4_2:0.1.12-17 libuuid1_2.17.2-9.1 libx11-6_2:1.4.3-1 libx11-data_2:1.4.3-1 libxau6_1:1.0.6-1 libxcb-render0_1.7-2 libxcb-shm0_1.7-2 libxcb1_1.7-2 libxdmcp6_1:1.1.0-1 libxext6_2:1.3.0-1 libxft2_2.2.0-2 libxml2_2.7.8.dfsg-2+b1 libxrender1_1:0.9.6-1 libxss1_1:1.2.1-1 libxt6_1:1.1.1-1 linux-libc-dev_2.6.39-1 login_1:4.1.4.2+svn3283-3 lsb-base_3.2-27 make_3.81-8.1 man-db_2.6.0.2-1 mawk_1.3.3-15 mount_2.17.2-9.1 ncurses-base_5.9-1 ncurses-bin_5.9-1 passwd_1:4.1.4.2+svn3283-3 patch_2.6.1-2 perl_5.12.3-7 perl-base_5.12.3-7 perl-modules_5.12.3-7 po-debconf_1.0.16+nmu1 r-base-core_2.13.0-2 r-base-dev_2.13.0-2 readline-common_6.2-2 sed_4.2.1-9 sensible-utils_0.0.6 sudo_1.7.4p6-1 sysv-rc_2.88dsf-13.7 sysvinit_2.88dsf-13.7 sysvinit-utils_2.88dsf-13.7 tar_1.25-3 tcl8.5_8.5.9-2 tk8.5_8.5.9-2 ttf-dejavu-core_2.33-1 tzdata_2011g-1 ucf_3.0025+nmu2 unzip_6.0-4 util-linux_2.17.2-9.1 x11-common_1:7.6+6 xdg-utils_1.1.0~rc1-2 xz-utils_5.0.0-2 zip_3.0-3 zlib1g_1:1.2.3.4.dfsg-3 zlib1g-dev_1:1.2.3.4.dfsg-3
+Kernel: Linux 2.6.32-5-amd64 i386 (x86_64)
+Toolchain package versions: binutils_2.21.53.20110805-1 dpkg-dev_1.16.0.3 g++-4.6_4.6.1-6 gcc-4.6_4.6.1-6 libc6-dev_2.13-16 libstdc++6_4.6.1-6 libstdc++6-4.6-dev_4.6.1-6 linux-libc-dev_3.0.0-1
+Package versions: apt_0.8.15.5 base-files_6.5 base-passwd_3.5.23 bash_4.1-3 binutils_2.21.53.20110805-1 bsdmainutils_8.2.3 bsdutils_1:2.19.1-5 build-essential_11.5 bzip2_1.0.5-6 cdbs_0.4.96 coreutils_8.5-1 cpp_4:4.6.1-2 cpp-4.6_4.6.1-6 dash_0.5.5.1-7.4 debconf_1.5.41 debfoster_2.7-1.1 debhelper_8.9.4 debian-archive-keyring_2010.08.28 debianutils_4.0.2 diffutils_1:3.0-1 dpatch_2.0.31 dpkg_1.16.0.3 dpkg-dev_1.16.0.3 e2fslibs_1.42~WIP-2011-07-02-1 e2fsprogs_1.42~WIP-2011-07-02-1 fakeroot_1.16-1 file_5.04-5+b1 findutils_4.4.2-1+b1 fontconfig_2.8.0-3 fontconfig-config_2.8.0-3 g++_4:4.6.1-2 g++-4.6_4.6.1-6 gcc_4:4.6.1-2 gcc-4.6_4.6.1-6 gcc-4.6-base_4.6.1-6 gettext_0.18.1.1-4 gettext-base_0.18.1.1-4 gfortran_4:4.6.1-2 gfortran-4.6_4.6.1-6 gnupg_1.4.11-3 gpgv_1.4.11-3 grep_2.9-1 groff-base_1.21-6 gzip_1.4-1 hostname_3.06 html2text_1.3.2a-15 initscripts_2.88dsf-13.11 insserv_1.14.0-2.1 intltool-debian_0.35.0+20060710.1 libacl1_2.2.51-3 libattr1_1:2.4.46-3 libblas-dev_1.2.20110419-2 libblas3gf_1.2.20110419-2 libblkid1_2.19.1-5 libbz2-1.0_1.0.5-6 libbz2-dev_1.0.5-6 libc-bin_2.13-16 libc-dev-bin_2.13-16 libc6_2.13-16 libc6-dev_2.13-16 libcairo2_1.10.2-6.1 libcloog-ppl0_0.15.9-3 libcomerr2_1.42~WIP-2011-07-02-1 libcroco3_0.6.2-1 libdatrie1_0.2.4-3 libdb5.1_5.1.25-11 libdpkg-perl_1.16.0.3 libexpat1_2.0.1-7 libfontconfig1_2.8.0-3 libfreetype6_2.4.6-1 libgc1c2_1:7.1-8 libgcc1_1:4.6.1-6 libgdbm3_1.8.3-10 libgfortran3_4.6.1-6 libglib2.0-0_2.28.6-1 libgmp10_2:5.0.1+dfsg-7 libgmpxx4ldbl_2:5.0.1+dfsg-7 libgomp1_4.6.1-6 libice6_2:1.0.7-2 libjpeg62_6b1-2 libjpeg8_8c-2 libjpeg8-dev_8c-2 liblapack-dev_3.3.1-1 liblapack3gf_3.3.1-1 liblzma2_5.0.0-2 libmagic1_5.04-5+b1 libmount1_2.19.1-5 libmpc2_0.9-3 libmpfr4_3.0.1-5 libncurses5_5.9-1 libncurses5-dev_5.9-1 libpam-modules_1.1.3-2 libpam-modules-bin_1.1.3-2 libpam-runtime_1.1.3-2 libpam0g_1.1.3-2 libpango1.0-0_1.28.4-2 libpaper-utils_1.1.24+nmu1 libpaper1_1.1.24+nmu1 libpcre3_8.12-4 libpcre3-dev_8.12-4 libpcrecpp0_8.12-4 libpipeline1_1.2.0-3 libpixman-1-0_0.22.2-1 libpng12-0_1.2.46-3 libpng12-dev_1.2.46-3 libppl-c4_0.11.2-4 libppl9_0.11.2-4 libpwl5_0.11.2-4 libquadmath0_4.6.1-6 libreadline-dev_6.2-2 libreadline6_6.2-2 libreadline6-dev_6.2-2 libselinux1_2.0.98-1.1 libsepol1_2.0.42-1 libslang2_2.2.4-2 libsm6_2:1.2.0-2 libss2_1.42~WIP-2011-07-02-1 libstdc++6_4.6.1-6 libstdc++6-4.6-dev_4.6.1-6 libthai-data_0.1.15-2 libthai0_0.1.15-2 libtiff4_3.9.5-1 libtimedate-perl_1.2000-1 libunistring0_0.9.3-4 libusb-0.1-4_2:0.1.12-18 libuuid1_2.19.1-5 libx11-6_2:1.4.4-1 libx11-data_2:1.4.4-1 libxau6_1:1.0.6-3 libxcb-render0_1.7-3 libxcb-shm0_1.7-3 libxcb1_1.7-3 libxdmcp6_1:1.1.0-3 libxext6_2:1.3.0-3 libxft2_2.2.0-3 libxml2_2.7.8.dfsg-4 libxrender1_1:0.9.6-2 libxss1_1:1.2.1-2 libxt6_1:1.1.1-2 linux-libc-dev_3.0.0-1 login_1:4.1.4.2+svn3283-3 lsb-base_3.2-27 make_3.81-8.1 man-db_2.6.0.2-2 mawk_1.3.3-15 mount_2.19.1-5 multiarch-support_2.13-16 ncurses-base_5.9-1 ncurses-bin_5.9-1 passwd_1:4.1.4.2+svn3283-3 patch_2.6.1-2 perl_5.12.4-4 perl-base_5.12.4-4 perl-modules_5.12.4-4 po-debconf_1.0.16+nmu1 r-base-core_2.13.1-1 r-base-dev_2.13.1-1 readline-common_6.2-2 sed_4.2.1-9 sensible-utils_0.0.6 sudo_1.7.4p6-1 sysv-rc_2.88dsf-13.11 sysvinit_2.88dsf-13.11 sysvinit-utils_2.88dsf-13.11 tar_1.25-3 tcl8.5_8.5.10-1 tk8.5_8.5.10-1 ttf-dejavu-core_2.33-1 tzdata_2011h-3 ucf_3.0025+nmu2 unzip_6.0-5 util-linux_2.19.1-5 x11-common_1:7.6+7 xdg-utils_1.1.0~rc1-2 xz-utils_5.0.0-2 zip_3.0-4 zlib1g_1:1.2.3.4.dfsg-3 zlib1g-dev_1:1.2.3.4.dfsg-3
┌──────────────────────────────────────────────────────────────────────────────┐
│ Build │
@@ -468,12 +547,12 @@ Unpack source
─────────────
gpgv: keyblock resource `/home/buildd/.gnupg/trustedkeys.gpg': file open error
-gpgv: Signature made Thu Jun 2 04:18:41 2011 UTC using RSA key ID 2295D502
+gpgv: Signature made Sun Aug 14 11:36:35 2011 UTC using RSA key ID 2295D502
gpgv: Can't check signature: public key not found
-dpkg-source: warning: failed to verify signature on ./r-bioc-limma_3.8.2-1.dsc
-dpkg-source: info: extracting r-bioc-limma in r-bioc-limma-3.8.2
-dpkg-source: info: unpacking r-bioc-limma_3.8.2.orig.tar.gz
-dpkg-source: info: applying r-bioc-limma_3.8.2-1.diff.gz
+dpkg-source: warning: failed to verify signature on ./r-bioc-limma_3.8.3-1.dsc
+dpkg-source: info: extracting r-bioc-limma in r-bioc-limma-3.8.3
+dpkg-source: info: unpacking r-bioc-limma_3.8.3.orig.tar.gz
+dpkg-source: info: applying r-bioc-limma_3.8.3-1.diff.gz
Check disc space
────────────────
@@ -488,8 +567,8 @@ dpkg-buildpackage: export CXXFLAGS from dpkg-buildflags (origin: vendor): -g -O2
dpkg-buildpackage: export FFLAGS from dpkg-buildflags (origin: vendor): -g -O2
dpkg-buildpackage: export LDFLAGS from dpkg-buildflags (origin: vendor):
dpkg-buildpackage: source package r-bioc-limma
-dpkg-buildpackage: source version 3.8.2-1
- dpkg-source --before-build r-bioc-limma-3.8.2
+dpkg-buildpackage: source version 3.8.3-1
+ dpkg-source --before-build r-bioc-limma-3.8.3
dpkg-buildpackage: host architecture i386
fakeroot debian/rules clean
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
@@ -497,9 +576,9 @@ test -x debian/rules
dh_testroot
/usr/bin/make -f debian/rules reverse-config
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
-make[1]: Entering directory `/build/buildd-r-bioc-limma_3.8.2-1-i386-GjiAiB/r-bioc-limma-3.8.2'
+make[1]: Entering directory `/build/buildd-r-bioc-limma_3.8.3-1-i386-UIiPW1/r-bioc-limma-3.8.3'
make[1]: Nothing to be done for `reverse-config'.
-make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.8.2-1-i386-GjiAiB/r-bioc-limma-3.8.2'
+make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.8.3-1-i386-UIiPW1/r-bioc-limma-3.8.3'
if [ "reverse-patches" = "reverse-patches" ]; then rm -f debian/stamp-patched; fi
patches:
if [ "reverse-patches" != "reverse-patches" ]; then touch debian/stamp-patched; fi
@@ -521,19 +600,19 @@ test -x debian/rules
mkdir -p "."
/usr/bin/make -f debian/rules reverse-config
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
-make[1]: Entering directory `/build/buildd-r-bioc-limma_3.8.2-1-i386-GjiAiB/r-bioc-limma-3.8.2'
+make[1]: Entering directory `/build/buildd-r-bioc-limma_3.8.3-1-i386-UIiPW1/r-bioc-limma-3.8.3'
make[1]: Nothing to be done for `reverse-config'.
-make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.8.2-1-i386-GjiAiB/r-bioc-limma-3.8.2'
+make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.8.3-1-i386-UIiPW1/r-bioc-limma-3.8.3'
if [ "debian/stamp-patched" = "reverse-patches" ]; then rm -f debian/stamp-patched; fi
patches:
if [ "debian/stamp-patched" != "reverse-patches" ]; then touch debian/stamp-patched; fi
if [ "debian/stamp-patched" != "reverse-patches" ] ; then \
/usr/bin/make -f debian/rules update-config ; \
fi
-/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) insteadmake[1]: Entering directory `/build/buildd-r-bioc-limma_3.8.2-1-i386-GjiAiB/r-bioc-limma-3.8.2'
-
+/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
+make[1]: Entering directory `/build/buildd-r-bioc-limma_3.8.3-1-i386-UIiPW1/r-bioc-limma-3.8.3'
make[1]: Nothing to be done for `update-config'.
-make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.8.2-1-i386-GjiAiB/r-bioc-limma-3.8.2'
+make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.8.3-1-i386-UIiPW1/r-bioc-limma-3.8.3'
fakeroot debian/rules binary-arch
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
test -x debian/rules
@@ -543,24 +622,24 @@ dh_installdirs -A
mkdir -p "."
dh_installdirs usr/lib/R/site-library
if test -f /usr/bin/xvfb-run; then \
- xvfb-run \
- R CMD INSTALL -l /build/buildd-r-bioc-limma_3.8.2-1-i386-GjiAiB/r-bioc-limma-3.8.2/debian/r-bioc-limma/usr/lib/R/site-library --clean \
+ xvfb-run -a \
+ R CMD INSTALL -l /build/buildd-r-bioc-limma_3.8.3-1-i386-UIiPW1/r-bioc-limma-3.8.3/debian/r-bioc-limma/usr/lib/R/site-library --clean \
. ; \
else \
- R CMD INSTALL -l /build/buildd-r-bioc-limma_3.8.2-1-i386-GjiAiB/r-bioc-limma-3.8.2/debian/r-bioc-limma/usr/lib/R/site-library \
+ R CMD INSTALL -l /build/buildd-r-bioc-limma_3.8.3-1-i386-UIiPW1/r-bioc-limma-3.8.3/debian/r-bioc-limma/usr/lib/R/site-library \
--clean . ;\
fi
* installing *source* package 'limma' ...
** libs
-make[1]: Entering directory `/build/buildd-r-bioc-limma_3.8.2-1-i386-GjiAiB/r-bioc-limma-3.8.2/src'
+make[1]: Entering directory `/build/buildd-r-bioc-limma_3.8.3-1-i386-UIiPW1/r-bioc-limma-3.8.3/src'
gcc -I/usr/share/R/include -fpic -std=gnu99 -O3 -pipe -g -c normexp.c -o normexp.o
normexp.c: In function 'fit_saddle_nelder_mead':
normexp.c:153:3: warning: floating constant exceeds range of 'double' [-Woverflow]
gcc -shared -o limma.so normexp.o -L/usr/lib/R/lib -lR
-make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.8.2-1-i386-GjiAiB/r-bioc-limma-3.8.2/src'
-make[1]: Entering directory `/build/buildd-r-bioc-limma_3.8.2-1-i386-GjiAiB/r-bioc-limma-3.8.2/src'
-make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.8.2-1-i386-GjiAiB/r-bioc-limma-3.8.2/src'
-installing to /build/buildd-r-bioc-limma_3.8.2-1-i386-GjiAiB/r-bioc-limma-3.8.2/debian/r-bioc-limma/usr/lib/R/site-library/limma/libs
+make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.8.3-1-i386-UIiPW1/r-bioc-limma-3.8.3/src'
+make[1]: Entering directory `/build/buildd-r-bioc-limma_3.8.3-1-i386-UIiPW1/r-bioc-limma-3.8.3/src'
+make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.8.3-1-i386-UIiPW1/r-bioc-limma-3.8.3/src'
+installing to /build/buildd-r-bioc-limma_3.8.3-1-i386-UIiPW1/r-bioc-limma-3.8.3/debian/r-bioc-limma/usr/lib/R/site-library/limma/libs
** R
** inst
** preparing package for lazy loading
@@ -570,17 +649,17 @@ installing to /build/buildd-r-bioc-limma_3.8.2-1-i386-GjiAiB/r-bioc-limma-3.8.2/
** testing if installed package can be loaded
* DONE (limma)
-rm -vf /build/buildd-r-bioc-limma_3.8.2-1-i386-GjiAiB/r-bioc-limma-3.8.2/debian/r-bioc-limma/usr/lib/R/site-library/R.css \
- /build/buildd-r-bioc-limma_3.8.2-1-i386-GjiAiB/r-bioc-limma-3.8.2/debian/r-bioc-limma/usr/lib/R/site-library/limma/COPYING \
- /build/buildd-r-bioc-limma_3.8.2-1-i386-GjiAiB/r-bioc-limma-3.8.2/debian/r-bioc-limma/usr/lib/R/site-library/limma/LICENSE.txt
+rm -vf /build/buildd-r-bioc-limma_3.8.3-1-i386-UIiPW1/r-bioc-limma-3.8.3/debian/r-bioc-limma/usr/lib/R/site-library/R.css \
+ /build/buildd-r-bioc-limma_3.8.3-1-i386-UIiPW1/r-bioc-limma-3.8.3/debian/r-bioc-limma/usr/lib/R/site-library/limma/COPYING \
+ /build/buildd-r-bioc-limma_3.8.3-1-i386-UIiPW1/r-bioc-limma-3.8.3/debian/r-bioc-limma/usr/lib/R/site-library/limma/LICENSE.txt
if test -f debian/overrides; then \
- install -d /build/buildd-r-bioc-limma_3.8.2-1-i386-GjiAiB/r-bioc-limma-3.8.2/debian/r-bioc-limma/usr/share/lintian/overrides ; \
+ install -d /build/buildd-r-bioc-limma_3.8.3-1-i386-UIiPW1/r-bioc-limma-3.8.3/debian/r-bioc-limma/usr/share/lintian/overrides ; \
install -m 0644 debian/overrides \
- /build/buildd-r-bioc-limma_3.8.2-1-i386-GjiAiB/r-bioc-limma-3.8.2/debian/r-bioc-limma/usr/share/lintian/overrides/r-bioc-limma; \
+ /build/buildd-r-bioc-limma_3.8.3-1-i386-UIiPW1/r-bioc-limma-3.8.3/debian/r-bioc-limma/usr/share/lintian/overrides/r-bioc-limma; \
fi
Adding cdbs dependencies to debian/r-bioc-limma.substvars
dh_installdirs -pr-bioc-limma
-echo "R:Depends=r-base-core (>= 2.13.0~)" >> debian/r-bioc-limma.substvars
+echo "R:Depends=r-base-core (>= 2.13.1~)" >> debian/r-bioc-limma.substvars
dh_installdocs -pr-bioc-limma
dh_installexamples -pr-bioc-limma
dh_installman -pr-bioc-limma
@@ -612,58 +691,58 @@ dh_shlibdeps -pr-bioc-limma
dh_gencontrol -pr-bioc-limma
dh_md5sums -pr-bioc-limma
dh_builddeb -pr-bioc-limma
-dpkg-deb: building package `r-bioc-limma' in `../r-bioc-limma_3.8.2-1_i386.deb'.
- dpkg-genchanges -B -mi386 Build Daemon (murphy) <buildd_i386-murphy at buildd.debian.org> >../r-bioc-limma_3.8.2-1_i386.changes
+dpkg-deb: building package `r-bioc-limma' in `../r-bioc-limma_3.8.3-1_i386.deb'.
+ dpkg-genchanges -B -mi386 Build Daemon <buildd_i386-biber at buildd.debian.org> >../r-bioc-limma_3.8.3-1_i386.changes
dpkg-genchanges: arch-specific upload - not including arch-independent packages
dpkg-genchanges: binary-only upload - not including any source code
- dpkg-source --after-build r-bioc-limma-3.8.2
+ dpkg-source --after-build r-bioc-limma-3.8.3
dpkg-buildpackage: binary only upload (no source included)
────────────────────────────────────────────────────────────────────────────────
-Build finished at 20110602-1327
+Build finished at 20110814-1238
-r-bioc-limma_3.8.2-1_i386.changes:
+r-bioc-limma_3.8.3-1_i386.changes:
Format: 1.8
-Date: Thu, 02 Jun 2011 13:07:58 +0900
+Date: Sun, 14 Aug 2011 20:30:21 +0900
Source: r-bioc-limma
Binary: r-bioc-limma
Architecture: i386
-Version: 3.8.2-1
+Version: 3.8.3-1
Distribution: sid
Urgency: low
-Maintainer: i386 Build Daemon (murphy) <buildd_i386-murphy at buildd.debian.org>
+Maintainer: i386 Build Daemon <buildd_i386-biber at buildd.debian.org>
Changed-By: Charles Plessy <plessy at debian.org>
Description:
r-bioc-limma - linear models for microarray data
-Closes: 628548
Changes:
- r-bioc-limma (3.8.2-1) unstable; urgency=low
+ r-bioc-limma (3.8.3-1) unstable; urgency=low
.
- * Initial release (closes: #628548).
+ * New upstream release.
+ * [e891bb6b] Corrected VCS-Git url.
Checksums-Sha1:
- 27a49a3be46d628591b9bf5f62c44d770f8cb0de 1393980 r-bioc-limma_3.8.2-1_i386.deb
+ 61296e6fa6897e77040e22bfde136453f07769aa 1398798 r-bioc-limma_3.8.3-1_i386.deb
Checksums-Sha256:
- a75b17393fdd967df4cee624b3c525853c92eca767f8bcb587a31788f4d7b1ff 1393980 r-bioc-limma_3.8.2-1_i386.deb
+ c8510b6fa5234bb4835cc356703bae4c8074075af539e8a6da87dfd60e66e30a 1398798 r-bioc-limma_3.8.3-1_i386.deb
Files:
- b1058690562b3704882d890e6d1b6674 1393980 gnu-r optional r-bioc-limma_3.8.2-1_i386.deb
+ 14dc517a19a74c5fcbf7763184cd27e6 1398798 gnu-r optional r-bioc-limma_3.8.3-1_i386.deb
┌──────────────────────────────────────────────────────────────────────────────┐
│ Package contents │
└──────────────────────────────────────────────────────────────────────────────┘
-r-bioc-limma_3.8.2-1_i386.deb
+r-bioc-limma_3.8.3-1_i386.deb
─────────────────────────────
new debian package, version 2.0.
- size 1393980 bytes: control archive= 1506 bytes.
+ size 1398798 bytes: control archive= 1506 bytes.
768 bytes, 16 lines control
2226 bytes, 29 lines md5sums
Package: r-bioc-limma
- Version: 3.8.2-1
+ Version: 3.8.3-1
Architecture: i386
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
Installed-Size: 1672
- Depends: libc6 (>= 2.1.3), r-base-core (>= 2.13.0~)
+ Depends: libc6 (>= 2.1.3), r-base-core (>= 2.13.1~)
Section: gnu-r
Priority: optional
Homepage: http://bioinf.wehi.edu.au/limma/
@@ -675,50 +754,50 @@ r-bioc-limma_3.8.2-1_i386.deb
apply to all array platforms and treat Affymetrix, single channel and two
channel experiments in a unified way.
-drwxr-xr-x root/root 0 2011-06-02 13:27 ./
-drwxr-xr-x root/root 0 2011-06-02 13:27 ./usr/
-drwxr-xr-x root/root 0 2011-06-02 13:27 ./usr/lib/
-drwxr-xr-x root/root 0 2011-06-02 13:27 ./usr/lib/R/
-drwxr-xr-x root/root 0 2011-06-02 13:27 ./usr/lib/R/site-library/
-drwxr-xr-x root/root 0 2011-06-02 13:27 ./usr/lib/R/site-library/limma/
--rw-r--r-- root/root 9360 2011-06-02 13:27 ./usr/lib/R/site-library/limma/INDEX
-drwxr-xr-x root/root 0 2011-06-02 13:27 ./usr/lib/R/site-library/limma/html/
--rw-r--r-- root/root 1179 2011-06-02 13:27 ./usr/lib/R/site-library/limma/html/R.css
--rw-r--r-- root/root 34039 2011-06-02 13:27 ./usr/lib/R/site-library/limma/html/00Index.html
--rw-r--r-- root/root 1872 2011-06-02 13:27 ./usr/lib/R/site-library/limma/NAMESPACE
--rwxr-xr-x root/root 1230 2011-06-02 13:27 ./usr/lib/R/site-library/limma/CITATION
-drwxr-xr-x root/root 0 2011-06-02 13:27 ./usr/lib/R/site-library/limma/libs/
--rw-r--r-- root/root 8076 2011-06-02 13:27 ./usr/lib/R/site-library/limma/libs/limma.so
-drwxr-xr-x root/root 0 2011-06-02 13:27 ./usr/lib/R/site-library/limma/R/
--rw-r--r-- root/root 172728 2011-06-02 13:27 ./usr/lib/R/site-library/limma/R/limma.rdb
--rw-r--r-- root/root 384 2011-06-02 13:27 ./usr/lib/R/site-library/limma/R/limma
--rw-r--r-- root/root 3733 2011-06-02 13:27 ./usr/lib/R/site-library/limma/R/limma.rdx
-drwxr-xr-x root/root 0 2011-06-02 13:27 ./usr/lib/R/site-library/limma/help/
--rw-r--r-- root/root 2361 2011-06-02 13:27 ./usr/lib/R/site-library/limma/help/aliases.rds
--rw-r--r-- root/root 449846 2011-06-02 13:27 ./usr/lib/R/site-library/limma/help/limma.rdb
--rw-r--r-- root/root 6150 2011-06-02 13:27 ./usr/lib/R/site-library/limma/help/AnIndex
--rw-r--r-- root/root 1335 2011-06-02 13:27 ./usr/lib/R/site-library/limma/help/paths.rds
--rw-r--r-- root/root 3247 2011-06-02 13:27 ./usr/lib/R/site-library/limma/help/limma.rdx
-drwxr-xr-x root/root 0 2011-06-02 13:27 ./usr/lib/R/site-library/limma/doc/
--rwxr-xr-x root/root 673 2011-06-02 13:27 ./usr/lib/R/site-library/limma/doc/index.html
--rw-r--r-- root/root 45616 2011-06-02 13:27 ./usr/lib/R/site-library/limma/doc/limma.pdf
--rwxr-xr-x root/root 84633 2011-06-02 13:27 ./usr/lib/R/site-library/limma/doc/changelog.txt
--rw-r--r-- root/root 687780 2011-06-02 13:27 ./usr/lib/R/site-library/limma/doc/usersguide.pdf
--rwxr-xr-x root/root 1711 2011-06-02 13:27 ./usr/lib/R/site-library/limma/doc/limma.Rnw
-drwxr-xr-x root/root 0 2011-06-02 13:27 ./usr/lib/R/site-library/limma/Meta/
--rw-r--r-- root/root 1048 2011-06-02 13:27 ./usr/lib/R/site-library/limma/Meta/package.rds
--rw-r--r-- root/root 217 2011-06-02 13:27 ./usr/lib/R/site-library/limma/Meta/vignette.rds
--rw-r--r-- root/root 503 2011-06-02 13:27 ./usr/lib/R/site-library/limma/Meta/nsInfo.rds
--rw-r--r-- root/root 5946 2011-06-02 13:27 ./usr/lib/R/site-library/limma/Meta/Rd.rds
--rw-r--r-- root/root 2853 2011-06-02 13:27 ./usr/lib/R/site-library/limma/Meta/links.rds
--rw-r--r-- root/root 5522 2011-06-02 13:27 ./usr/lib/R/site-library/limma/Meta/hsearch.rds
--rw-r--r-- root/root 1003 2011-06-02 13:27 ./usr/lib/R/site-library/limma/DESCRIPTION
-drwxr-xr-x root/root 0 2011-06-02 13:27 ./usr/share/
-drwxr-xr-x root/root 0 2011-06-02 13:27 ./usr/share/doc/
-drwxr-xr-x root/root 0 2011-06-02 13:27 ./usr/share/doc/r-bioc-limma/
--rw-r--r-- root/root 161 2011-06-02 13:27 ./usr/share/doc/r-bioc-limma/changelog.Debian.gz
--rw-r--r-- root/root 2116 2011-06-02 13:27 ./usr/share/doc/r-bioc-limma/copyright
--rw-r--r-- root/root 25983 2011-05-20 04:14 ./usr/share/doc/r-bioc-limma/changelog.gz
+drwxr-xr-x root/root 0 2011-08-14 12:37 ./
+drwxr-xr-x root/root 0 2011-08-14 12:37 ./usr/
+drwxr-xr-x root/root 0 2011-08-14 12:37 ./usr/lib/
+drwxr-xr-x root/root 0 2011-08-14 12:37 ./usr/lib/R/
+drwxr-xr-x root/root 0 2011-08-14 12:37 ./usr/lib/R/site-library/
+drwxr-xr-x root/root 0 2011-08-14 12:37 ./usr/lib/R/site-library/limma/
+drwxr-xr-x root/root 0 2011-08-14 12:37 ./usr/lib/R/site-library/limma/Meta/
+-rw-r--r-- root/root 217 2011-08-14 12:37 ./usr/lib/R/site-library/limma/Meta/vignette.rds
+-rw-r--r-- root/root 2854 2011-08-14 12:37 ./usr/lib/R/site-library/limma/Meta/links.rds
+-rw-r--r-- root/root 5947 2011-08-14 12:37 ./usr/lib/R/site-library/limma/Meta/Rd.rds
+-rw-r--r-- root/root 5524 2011-08-14 12:37 ./usr/lib/R/site-library/limma/Meta/hsearch.rds
+-rw-r--r-- root/root 505 2011-08-14 12:37 ./usr/lib/R/site-library/limma/Meta/nsInfo.rds
+-rw-r--r-- root/root 1048 2011-08-14 12:37 ./usr/lib/R/site-library/limma/Meta/package.rds
+-rw-r--r-- root/root 1872 2011-08-14 12:37 ./usr/lib/R/site-library/limma/NAMESPACE
+drwxr-xr-x root/root 0 2011-08-14 12:37 ./usr/lib/R/site-library/limma/doc/
+-rwxr-xr-x root/root 673 2011-08-14 12:37 ./usr/lib/R/site-library/limma/doc/index.html
+-rw-r--r-- root/root 687780 2011-08-14 12:37 ./usr/lib/R/site-library/limma/doc/usersguide.pdf
+-rwxr-xr-x root/root 84899 2011-08-14 12:37 ./usr/lib/R/site-library/limma/doc/changelog.txt
+-rw-r--r-- root/root 45616 2011-08-14 12:37 ./usr/lib/R/site-library/limma/doc/limma.pdf
+-rwxr-xr-x root/root 1711 2011-08-14 12:37 ./usr/lib/R/site-library/limma/doc/limma.Rnw
+-rw-r--r-- root/root 1003 2011-08-14 12:37 ./usr/lib/R/site-library/limma/DESCRIPTION
+drwxr-xr-x root/root 0 2011-08-14 12:38 ./usr/lib/R/site-library/limma/libs/
+-rw-r--r-- root/root 8120 2011-08-14 12:38 ./usr/lib/R/site-library/limma/libs/limma.so
+drwxr-xr-x root/root 0 2011-08-14 12:37 ./usr/lib/R/site-library/limma/help/
+-rw-r--r-- root/root 1337 2011-08-14 12:37 ./usr/lib/R/site-library/limma/help/paths.rds
+-rw-r--r-- root/root 450115 2011-08-14 12:37 ./usr/lib/R/site-library/limma/help/limma.rdb
+-rw-r--r-- root/root 3255 2011-08-14 12:37 ./usr/lib/R/site-library/limma/help/limma.rdx
+-rw-r--r-- root/root 6150 2011-08-14 12:37 ./usr/lib/R/site-library/limma/help/AnIndex
+-rw-r--r-- root/root 2363 2011-08-14 12:37 ./usr/lib/R/site-library/limma/help/aliases.rds
+-rw-r--r-- root/root 9360 2011-08-14 12:37 ./usr/lib/R/site-library/limma/INDEX
+drwxr-xr-x root/root 0 2011-08-14 12:37 ./usr/lib/R/site-library/limma/html/
+-rw-r--r-- root/root 1179 2011-08-14 12:37 ./usr/lib/R/site-library/limma/html/R.css
+-rw-r--r-- root/root 34039 2011-08-14 12:37 ./usr/lib/R/site-library/limma/html/00Index.html
+drwxr-xr-x root/root 0 2011-08-14 12:37 ./usr/lib/R/site-library/limma/R/
+-rw-r--r-- root/root 384 2011-08-14 12:37 ./usr/lib/R/site-library/limma/R/limma
+-rw-r--r-- root/root 173274 2011-08-14 12:37 ./usr/lib/R/site-library/limma/R/limma.rdb
+-rw-r--r-- root/root 3746 2011-08-14 12:37 ./usr/lib/R/site-library/limma/R/limma.rdx
+-rwxr-xr-x root/root 1230 2011-08-14 12:37 ./usr/lib/R/site-library/limma/CITATION
+drwxr-xr-x root/root 0 2011-08-14 12:37 ./usr/share/
+drwxr-xr-x root/root 0 2011-08-14 12:37 ./usr/share/doc/
+drwxr-xr-x root/root 0 2011-08-14 12:38 ./usr/share/doc/r-bioc-limma/
+-rw-r--r-- root/root 26050 2011-08-08 16:14 ./usr/share/doc/r-bioc-limma/changelog.gz
+-rw-r--r-- root/root 234 2011-08-14 12:37 ./usr/share/doc/r-bioc-limma/changelog.Debian.gz
+-rw-r--r-- root/root 2117 2011-08-14 12:37 ./usr/share/doc/r-bioc-limma/copyright
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -732,174 +811,26 @@ Built successfully
│ Post Build │
└──────────────────────────────────────────────────────────────────────────────┘
-Purging /var/lib/schroot/mount/sid-i386-sbuild-fb8a560d-99cb-4793-b349-a439ebaca29a/build/buildd-r-bioc-limma_3.8.2-1-i386-GjiAiB
-Reading package lists...
-Building dependency tree...
-Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
-Reading package lists...
-Building dependency tree...
-Reading state information...
-The following packages will be REMOVED:
- bsdmainutils* cdbs* debhelper* dpatch* file* fontconfig* fontconfig-config*
- gettext* gettext-base* gfortran* gfortran-4.6* groff-base* html2text*
- intltool-debian* libblas-dev* libblas3gf* libbz2-dev* libcairo2* libcroco3*
- libdatrie1* libexpat1* libfontconfig1* libfreetype6* libgfortran3*
- libglib2.0-0* libice6* libjpeg62* libjpeg62-dev* liblapack-dev*
- liblapack3gf* libmagic1* libncurses5-dev* libpango1.0-0* libpaper-utils*
- libpaper1* libpcre3* libpcre3-dev* libpcrecpp0* libpipeline1* libpixman-1-0*
- libpng12-0* libpng12-dev* libreadline-dev* libreadline6-dev* libsm6*
- libthai-data* libthai0* libtiff4* libunistring0* libx11-6* libx11-data*
- libxau6* libxcb-render0* libxcb-shm0* libxcb1* libxdmcp6* libxext6* libxft2*
- libxml2* libxrender1* libxss1* libxt6* man-db* po-debconf* r-base-core*
- r-base-dev* tcl8.5* tk8.5* ttf-dejavu-core* ucf* unzip* x11-common*
- xdg-utils* zip* zlib1g-dev*
-0 upgraded, 0 newly installed, 75 to remove and 0 not upgraded.
-After this operation, 119 MB disk space will be freed.
-(Reading database ... 14791 files and directories currently installed.)
-Removing r-base-dev ...
-Removing cdbs ...
-Removing debhelper ...
-Removing man-db ...
-Purging configuration files for man-db ...
-Removing bsdmainutils ...
-Purging configuration files for bsdmainutils ...
-Removing dpatch ...
-Purging configuration files for dpatch ...
-Removing file ...
-Removing r-base-core ...
-Purging configuration files for r-base-core ...
-Removing libpango1.0-0 ...
-Purging configuration files for libpango1.0-0 ...
-Removing fontconfig ...
-Purging configuration files for fontconfig ...
-Removing tk8.5 ...
-Purging configuration files for tk8.5 ...
-Removing libxft2 ...
-Purging configuration files for libxft2 ...
-Removing libcairo2 ...
-Purging configuration files for libcairo2 ...
-Removing libfontconfig1 ...
-Purging configuration files for libfontconfig1 ...
-Removing fontconfig-config ...
-Purging configuration files for fontconfig-config ...
-Removing po-debconf ...
-Removing intltool-debian ...
-Removing gettext ...
-Removing gettext-base ...
-Removing gfortran ...
-Removing gfortran-4.6 ...
-Removing groff-base ...
-Purging configuration files for groff-base ...
-Removing html2text ...
-Purging configuration files for html2text ...
-Removing liblapack-dev ...
-Removing libblas-dev ...
-Removing liblapack3gf ...
-Purging configuration files for liblapack3gf ...
-Removing libblas3gf ...
-Purging configuration files for libblas3gf ...
-Removing libbz2-dev ...
-Removing libcroco3 ...
-Purging configuration files for libcroco3 ...
-Removing libthai0 ...
-Purging configuration files for libthai0 ...
-Removing libdatrie1 ...
-Purging configuration files for libdatrie1 ...
-Removing libexpat1 ...
-Purging configuration files for libexpat1 ...
-Removing libfreetype6 ...
-Purging configuration files for libfreetype6 ...
-Removing libgfortran3 ...
-Purging configuration files for libgfortran3 ...
-Removing libglib2.0-0 ...
-Purging configuration files for libglib2.0-0 ...
-Removing libxt6 ...
-Purging configuration files for libxt6 ...
-Removing libsm6 ...
-Purging configuration files for libsm6 ...
-Removing libice6 ...
-Purging configuration files for libice6 ...
-Removing libtiff4 ...
-Purging configuration files for libtiff4 ...
-Removing libjpeg62-dev ...
-Removing libjpeg62 ...
-Removing libmagic1 ...
-Purging configuration files for libmagic1 ...
-Removing libreadline-dev ...
-Removing libreadline6-dev ...
-Removing libncurses5-dev ...
-Removing libpaper-utils ...
-Removing libpaper1 ...
-Purging configuration files for libpaper1 ...
-Removing libpcre3-dev ...
-Removing libpcrecpp0 ...
-Purging configuration files for libpcrecpp0 ...
-Removing libpcre3 ...
-Purging configuration files for libpcre3 ...
-Removing libpipeline1 ...
-Purging configuration files for libpipeline1 ...
-Removing libpixman-1-0 ...
-Purging configuration files for libpixman-1-0 ...
-Removing libpng12-dev ...
-Removing libpng12-0 ...
-Purging configuration files for libpng12-0 ...
-Removing libthai-data ...
-Removing libunistring0 ...
-Purging configuration files for libunistring0 ...
-Removing libxss1 ...
-Purging configuration files for libxss1 ...
-Removing libxrender1 ...
-Purging configuration files for libxrender1 ...
-Removing libxext6 ...
-Purging configuration files for libxext6 ...
-Removing libx11-6 ...
-Purging configuration files for libx11-6 ...
-Removing libx11-data ...
-Removing libxcb-shm0 ...
-Purging configuration files for libxcb-shm0 ...
-Removing libxcb-render0 ...
-Purging configuration files for libxcb-render0 ...
-Removing libxcb1 ...
-Purging configuration files for libxcb1 ...
-Removing libxau6 ...
-Purging configuration files for libxau6 ...
-Removing libxdmcp6 ...
-Purging configuration files for libxdmcp6 ...
-Removing libxml2 ...
-Purging configuration files for libxml2 ...
-Removing tcl8.5 ...
-Purging configuration files for tcl8.5 ...
-Removing ttf-dejavu-core ...
-Removing ucf ...
-Purging configuration files for ucf ...
-Removing unzip ...
-Purging configuration files for unzip ...
-Removing x11-common ...
-All runlevel operations denied by policy
-invoke-rc.d: policy-rc.d denied execution of stop.
-Purging configuration files for x11-common ...
-Removing xdg-utils ...
-Removing zip ...
-Removing zlib1g-dev ...
+Purging /var/lib/schroot/mount/sid-i386-sbuild-c610d6f5-a759-43c2-96f9-9755ff325fb0/build/buildd-r-bioc-limma_3.8.3-1-i386-UIiPW1
+Not cleaning session: cloned chroot in use
┌──────────────────────────────────────────────────────────────────────────────┐
│ Summary │
└──────────────────────────────────────────────────────────────────────────────┘
Architecture: i386
-Build-Space: 5072
-Build-Time: 20
+Build-Space: 5076
+Build-Time: 18
Distribution: sid
-Install-Time: 23
-Job: r-bioc-limma_3.8.2-1
+Install-Time: 123
+Job: r-bioc-limma_3.8.3-1
Package: r-bioc-limma
-Package-Time: 55
-Source-Version: 3.8.2-1
-Space: 5072
+Package-Time: 170
+Source-Version: 3.8.3-1
+Space: 5076
Status: successful
-Version: 3.8.2-1
+Version: 3.8.3-1
────────────────────────────────────────────────────────────────────────────────
-Finished at 20110602-1327
-Build needed 00:00:55, 5072k disc space
-Signature with key '1C3F1E5E' requested:
+Finished at 20110814-1238
+Build needed 00:02:50, 5076k disc space
+Signature with key 'E4786BDC' requested:
diff --git a/ia64.log b/ia64.log
index 94174a7..1affb1d 100644
--- a/ia64.log
+++ b/ia64.log
@@ -1,65 +1,67 @@
-From buildd at caballero.debian.org Fri Jun 03 03:57:30 2011
-Return-path: <buildd at caballero.debian.org>
+From buildd at alkman.debian.org Wed Aug 17 05:16:21 2011
+Return-path: <buildd at alkman.debian.org>
Received: from merikanto.debian.org ([2001:858:2:2:216:35ff:fec4:a49a])
from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
CN=merikanto.debian.org,
EMAIL=hostmaster at merikanto.debian.org (verified)
by grieg.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
- (Exim 4.72) (envelope-from <buildd at caballero.debian.org>)
- id 1QSLVp-00061m-LP
- for logs at buildd.debian.org; Fri, 03 Jun 2011 03:57:30 +0000
-Received: from caballero.debian.org ([193.201.200.200])
+ (Exim 4.72) (envelope-from <buildd at alkman.debian.org>)
+ id 1QtYUH-0006Mk-4a
+ for logs at buildd.debian.org; Wed, 17 Aug 2011 05:16:21 +0000
+Received: from alkman.debian.org ([192.25.206.63])
from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
- CN=caballero.debian.org,
- EMAIL=hostmaster at caballero.debian.org (verified)
+ CN=alkman.debian.org, EMAIL=hostmaster at alkman.debian.org (verified)
by merikanto.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
- (Exim 4.72) (envelope-from <buildd at caballero.debian.org>)
- id 1QSLVo-0002TL-6i; Fri, 03 Jun 2011 03:57:28 +0000
-Received: from buildd by caballero.debian.org with local (Exim 4.69)
- (envelope-from <buildd at caballero.debian.org>) id 1QSLVn-0002cj-BO
- for buildd-porters at caballero.debian.org; Fri, 03 Jun 2011 03:57:27 +0000
-From: buildd on caballero <buildd at caballero.debian.org>
-To: buildd-porters at caballero.debian.org
-Subject: Log for successful build of r-bioc-limma_3.8.2-1 on ia64 (dist=sid)
+ (Exim 4.72) (envelope-from <buildd at alkman.debian.org>)
+ id 1QtYUF-0002zA-4z
+ for logs at buildd.debian.org; Wed, 17 Aug 2011 05:16:19 +0000
+Received: from buildd by alkman.debian.org with local (Exim 4.72)
+ (envelope-from <buildd at alkman.debian.org>)
+ id 1QtYUC-0007iE-SW; Wed, 17 Aug 2011 05:16:16 +0000
+Date: Wed, 17 Aug 2011 05:16:16 +0000
+Message-Id: <E1QtYUC-0007iE-SW at alkman.debian.org>
+From: buildd on alkman <buildd at alkman.debian.org>
+To: buildd-porters at alkman.debian.org,logs at buildd.debian.org
+Subject: Log for successful build of r-bioc-limma_3.8.3-1 on ia64 (dist=sid)
Content-Type: text/plain; charset=UTF-8
Content-Transfer-Encoding: 8bit
-Message-Id: <E1QSLVn-0002cj-BO at caballero.debian.org>
-Date: Fri, 03 Jun 2011 03:57:27 +0000
-Delivered-To: buildd-porters at caballero.debian.org
Delivered-To: logs at buildd.debian.org
-sbuild (Debian sbuild) 0.61.0 (23 Feb 2011) on caballero.debian.org
+sbuild (Debian sbuild) 0.61.0 (23 Feb 2011) on alkman.debian.org
╔══════════════════════════════════════════════════════════════════════════════╗
-║ r-bioc-limma 3.8.2-1 (ia64) 03 Jun 2011 03:55 ║
+║ r-bioc-limma 3.8.3-1 (ia64) 17 Aug 2011 05:10 ║
╚══════════════════════════════════════════════════════════════════════════════╝
Package: r-bioc-limma
-Version: 3.8.2-1
-Source Version: 3.8.2-1
+Version: 3.8.3-1
+Source Version: 3.8.3-1
Architecture: ia64
-Hit http://mirror.positive-internet.com sid InRelease
-Hit http://mirror.positive-internet.com sid/main Sources/DiffIndex
-Hit http://incoming.debian.org sid InRelease
+Get:1 http://spohr.debian.org unstable InRelease [146 kB]
+Get:2 http://incoming.debian.org unstable InRelease [146 kB]
+Get:3 http://spohr.debian.org unstable/main Sources [5453 kB]
+Get:4 http://spohr.debian.org unstable/contrib Sources [52.5 kB]
+Get:5 http://spohr.debian.org unstable/non-free Sources [95.9 kB]
+Get:6 http://spohr.debian.org unstable/main ia64 Packages [7346 kB]
Ign http://incoming.debian.org InRelease
-Hit http://mirror.positive-internet.com sid/contrib Sources/DiffIndex
-Hit http://mirror.positive-internet.com sid/main ia64 Packages/DiffIndex
-Hit http://mirror.positive-internet.com sid/contrib ia64 Packages/DiffIndex
-Ign http://mirror.positive-internet.com sid/contrib TranslationIndex
-Hit http://mirror.positive-internet.com sid/main TranslationIndex
-Hit http://incoming.debian.org Release.gpg
-Ign http://mirror.positive-internet.com sid/contrib Translation-en
-Hit http://incoming.debian.org sid/main Sources/DiffIndex
-Hit http://incoming.debian.org sid/contrib Sources/DiffIndex
-Hit http://incoming.debian.org sid/main ia64 Packages/DiffIndex
-Hit http://incoming.debian.org sid/contrib ia64 Packages/DiffIndex
-Ign http://incoming.debian.org sid/contrib TranslationIndex
-Hit http://incoming.debian.org sid/main TranslationIndex
-Hit http://incoming.debian.org Release
-Hit http://incoming.debian.org Sources
-Hit http://incoming.debian.org Packages
-Ign http://incoming.debian.org sid/contrib Translation-en
+Get:7 http://incoming.debian.org Release.gpg [836 B]
+Get:8 http://incoming.debian.org unstable/main Sources [5453 kB]
+Get:9 http://spohr.debian.org unstable/contrib ia64 Packages [55.1 kB]
+Ign http://spohr.debian.org unstable/contrib TranslationIndex
+Get:10 http://spohr.debian.org unstable/main TranslationIndex [2185 B]
+Ign http://spohr.debian.org unstable/contrib Translation-en
+Get:11 http://incoming.debian.org unstable/contrib Sources [52.5 kB]
+Get:12 http://incoming.debian.org unstable/non-free Sources [95.9 kB]
+Get:13 http://incoming.debian.org unstable/main ia64 Packages [7346 kB]
+Get:14 http://incoming.debian.org unstable/contrib ia64 Packages [55.1 kB]
+Ign http://incoming.debian.org unstable/contrib TranslationIndex
+Get:15 http://incoming.debian.org unstable/main TranslationIndex [2185 B]
+Get:16 http://incoming.debian.org Release [1604 B]
+Get:17 http://incoming.debian.org Sources [33.2 kB]
+Get:18 http://incoming.debian.org Packages [423 kB]
+Ign http://incoming.debian.org unstable/contrib Translation-en
Ign http://incoming.debian.org Translation-en
+Fetched 26.8 MB in 24s (1098 kB/s)
Reading package lists...
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -79,12 +81,12 @@ Reading package lists...
Building dependency tree...
Reading state information...
NOTICE: 'r-bioc-limma' packaging is maintained in the 'Git' version control system at:
-git://anonscm.debian.org/debian-med/r-bioc-limma.git
+git://git.debian.org/git/debian-med/r-bioc-limma.git
Need to get 921 kB of source archives.
-Get:1 http://mirror.positive-internet.com/debian/ sid/main r-bioc-limma 3.8.2-1 (dsc) [1931 B]
-Get:2 http://mirror.positive-internet.com/debian/ sid/main r-bioc-limma 3.8.2-1 (tar) [917 kB]
-Get:3 http://mirror.positive-internet.com/debian/ sid/main r-bioc-limma 3.8.2-1 (diff) [2158 B]
-Fetched 921 kB in 0s (5010 kB/s)
+Get:1 http://spohr.debian.org/debian/ unstable/main r-bioc-limma 3.8.3-1 (dsc) [1931 B]
+Get:2 http://spohr.debian.org/debian/ unstable/main r-bioc-limma 3.8.3-1 (tar) [917 kB]
+Get:3 http://spohr.debian.org/debian/ unstable/main r-bioc-limma 3.8.3-1 (diff) [2212 B]
+Fetched 921 kB in 0s (8574 kB/s)
Download complete and in download only mode
Check arch
@@ -98,18 +100,18 @@ Check arch
Build-Depends: build-essential, fakeroot
Checking for already installed dependencies...
build-essential: already installed (11.5)
-fakeroot: already installed (1.15.1-1)
+fakeroot: already installed (1.16-1)
Checking for dependency conflicts...
Installing positive dependencies:
Reading package lists...
Building dependency tree...
Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 10 not upgraded.
+0 upgraded, 0 newly installed, 0 to remove and 34 not upgraded.
Removing negative dependencies:
Reading package lists...
Building dependency tree...
Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 10 not upgraded.
+0 upgraded, 0 newly installed, 0 to remove and 34 not upgraded.
Checking correctness of dependencies...
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -118,344 +120,466 @@ Checking correctness of dependencies...
Build-Depends: base-files, base-passwd, bash, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, ncurses-base, ncurses-bin, perl-base, sed, login, sysvinit-utils, sysvinit, tar, bsdutils, mount, util-linux, libc6.1-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 8), cdbs, r-base-dev (>= 2.10.0)
Checking for already installed dependencies...
-base-files: already installed (6.3)
-base-passwd: already installed (3.5.22)
+base-files: already installed (6.4)
+base-passwd: already installed (3.5.23)
bash: already installed (4.1-3)
coreutils: already installed (8.5-1)
dash: already installed (0.5.5.1-7.4)
-debianutils: already installed (3.4.4)
+debianutils: already installed (4.0.2)
diffutils: already installed (1:3.0-1)
dpkg: already installed (1.16.0.3)
-e2fsprogs: already installed (1.41.12-4)
+e2fsprogs: already installed (1.42~WIP-2011-07-02-1)
findutils: already installed (4.4.2-1+b1)
-grep: already installed (2.6.3-3)
-gzip: already installed (1.3.12-9)
+grep: already installed (2.9-1)
+gzip: already installed (1.4-1)
hostname: already installed (3.06)
ncurses-base: already installed (5.9-1)
ncurses-bin: already installed (5.9-1)
-perl-base: already installed (5.12.3-7)
+perl-base: already installed (5.12.4-1)
sed: already installed (4.2.1-9)
login: already installed (1:4.1.4.2+svn3283-3)
-sysvinit-utils: already installed (2.88dsf-13.2)
-sysvinit: already installed (2.88dsf-13.2)
+sysvinit-utils: already installed (2.88dsf-13.11)
+sysvinit: already installed (2.88dsf-13.11)
tar: already installed (1.25-3)
-bsdutils: already installed (1:2.17.2-9.1)
-mount: already installed (2.17.2-9.1)
-util-linux: already installed (2.17.2-9.1)
-libc6.1-dev: already installed (2.13-4)
-gcc: already installed (4:4.4.5-9 >= 4:4.4.3 is satisfied)
-g++: already installed (4:4.4.5-9 >= 4:4.4.3 is satisfied)
+bsdutils: already installed (1:2.19.1-4)
+mount: already installed (2.19.1-4)
+util-linux: already installed (2.19.1-4)
+libc6.1-dev: already installed (2.13-10)
+gcc: already installed (4:4.6.1-2 >= 4:4.4.3 is satisfied)
+g++: already installed (4:4.6.1-2 >= 4:4.4.3 is satisfied)
make: already installed (3.81-8.1)
dpkg-dev: already installed (1.16.0.3 >= 1.13.5 is satisfied)
debhelper: missing
-Using default version 8.1.6
+Using default version 8.9.4
cdbs: missing
r-base-dev: missing
-Using default version 2.13.0-2
+Using default version 2.13.1-1
Checking for dependency conflicts...
Installing positive dependencies: debhelper cdbs r-base-dev
Reading package lists...
Building dependency tree...
Reading state information...
The following extra packages will be installed:
- bsdmainutils dpatch file fontconfig fontconfig-config gettext gettext-base
- gfortran gfortran-4.4 groff-base html2text intltool-debian libblas-dev
- libblas3gf libbz2-dev libcairo2 libcroco3 libdatrie1 libexpat1
- libfontconfig1 libfreetype6 libgfortran3 libglib2.0-0 libice6 libjpeg62
- libjpeg62-dev liblapack-dev liblapack3gf libmagic1 libncurses5-dev
- libpango1.0-0 libpaper-utils libpaper1 libpcre3 libpcre3-dev libpcrecpp0
- libpipeline1 libpixman-1-0 libpng12-0 libpng12-dev libquadmath0
- libreadline-dev libreadline6-dev libsm6 libthai-data libthai0 libtiff4
- libunistring0 libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0
- libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxrender1 libxss1 libxt6 man-db
- po-debconf r-base-core tcl8.5 tk8.5 ttf-dejavu-core ucf unzip x11-common
- xdg-utils zip zlib1g-dev
+ bsdmainutils cpp-4.6 dpatch file fontconfig fontconfig-config g++-4.6
+ gcc-4.6 gcc-4.6-base gettext gettext-base gfortran gfortran-4.6 groff-base
+ html2text intltool-debian libblas-dev libblas3gf libbz2-dev libcairo2
+ libcroco3 libdatrie1 libexpat1 libfontconfig1 libfreetype6 libgcc1
+ libgfortran3 libglib2.0-0 libgomp1 libice6 libjpeg62 libjpeg8 libjpeg8-dev
+ liblapack-dev liblapack3gf libmagic1 libncurses5-dev libpango1.0-0
+ libpaper-utils libpaper1 libpcre3 libpcre3-dev libpcrecpp0 libpipeline1
+ libpixman-1-0 libpng12-0 libpng12-dev libquadmath0 libreadline-dev
+ libreadline6-dev libsm6 libstdc++6 libstdc++6-4.6-dev libthai-data libthai0
+ libtiff4 libunistring0 libx11-6 libx11-data libxau6 libxcb-render0
+ libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxrender1 libxss1
+ libxt6 man-db po-debconf r-base-core tcl8.5 tk8.5 ttf-dejavu-core ucf unzip
+ x11-common xdg-utils zip zlib1g-dev
Suggested packages:
- wamerican wordlist whois vacation devscripts dh-make curl defoma gettext-doc
- gfortran-doc gfortran-4.4-doc libgfortran3-dbg groff ncurses-doc ttf-baekmuk
+ wamerican wordlist whois vacation devscripts gcc-4.6-locales dh-make curl
+ defoma gcc-4.6-doc libstdc++6-4.6-dbg libmudflap0-4.6-dev libgcc1-dbg
+ libgomp1-dbg libquadmath0-dbg libmudflap0-dbg gettext-doc gfortran-doc
+ gfortran-4.6-doc libgfortran3-dbg groff ncurses-doc ttf-baekmuk
ttf-arphic-gbsn00lp ttf-arphic-bsmi00lp ttf-arphic-gkai00mp
- ttf-arphic-bkai00mp less www-browser libmail-box-perl r-doc-info r-doc-pdf
- r-mathlib r-base-html tclreadline gvfs-bin
+ ttf-arphic-bkai00mp libstdc++6-4.6-doc less www-browser libmail-box-perl
+ r-doc-info r-doc-pdf r-mathlib r-base-html tclreadline gvfs-bin
Recommended packages:
autotools-dev patchutils autopoint libglib2.0-data shared-mime-info
x-ttcidfont-conf xml-core libmail-sendmail-perl r-recommended r-doc-html
xterm x-terminal-emulator libfile-mimeinfo-perl x11-utils x11-xserver-utils
The following NEW packages will be installed:
bsdmainutils cdbs debhelper dpatch file fontconfig fontconfig-config gettext
- gettext-base gfortran gfortran-4.4 groff-base html2text intltool-debian
+ gettext-base gfortran gfortran-4.6 groff-base html2text intltool-debian
libblas-dev libblas3gf libbz2-dev libcairo2 libcroco3 libdatrie1 libexpat1
libfontconfig1 libfreetype6 libgfortran3 libglib2.0-0 libice6 libjpeg62
- libjpeg62-dev liblapack-dev liblapack3gf libmagic1 libncurses5-dev
+ libjpeg8 libjpeg8-dev liblapack-dev liblapack3gf libmagic1 libncurses5-dev
libpango1.0-0 libpaper-utils libpaper1 libpcre3 libpcre3-dev libpcrecpp0
- libpipeline1 libpixman-1-0 libpng12-0 libpng12-dev libquadmath0
- libreadline-dev libreadline6-dev libsm6 libthai-data libthai0 libtiff4
- libunistring0 libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0
- libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxrender1 libxss1 libxt6 man-db
- po-debconf r-base-core r-base-dev tcl8.5 tk8.5 ttf-dejavu-core ucf unzip
- x11-common xdg-utils zip zlib1g-dev
+ libpipeline1 libpixman-1-0 libpng12-0 libpng12-dev libreadline-dev
+ libreadline6-dev libsm6 libthai-data libthai0 libtiff4 libunistring0
+ libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6
+ libxext6 libxft2 libxml2 libxrender1 libxss1 libxt6 man-db po-debconf
+ r-base-core r-base-dev tcl8.5 tk8.5 ttf-dejavu-core ucf unzip x11-common
+ xdg-utils zip zlib1g-dev
+The following packages will be upgraded:
+ cpp-4.6 g++-4.6 gcc-4.6 gcc-4.6-base libgcc1 libgomp1 libquadmath0
+ libstdc++6 libstdc++6-4.6-dev
+9 upgraded, 76 newly installed, 0 to remove and 25 not upgraded.
+Need to get 88.6 MB of archives.
+After this operation, 192 MB of additional disk space will be used.
+Get:1 http://spohr.debian.org/debian/ unstable/main libgomp1 ia64 4.6.1-7 [36.3 kB]
+Get:2 http://spohr.debian.org/debian/ unstable/main gcc-4.6-base ia64 4.6.1-7 [134 kB]
+Get:3 http://spohr.debian.org/debian/ unstable/main libgcc1 ia64 1:4.6.1-7 [44.9 kB]
+Get:4 http://spohr.debian.org/debian/ unstable/main cpp-4.6 ia64 4.6.1-7 [6011 kB]
+Get:5 http://spohr.debian.org/debian/ unstable/main libquadmath0 ia64 4.6.1-7 [166 kB]
+Get:6 http://spohr.debian.org/debian/ unstable/main libstdc++6-4.6-dev ia64 4.6.1-7 [1864 kB]
+Get:7 http://spohr.debian.org/debian/ unstable/main g++-4.6 ia64 4.6.1-7 [7237 kB]
+Get:8 http://spohr.debian.org/debian/ unstable/main gcc-4.6 ia64 4.6.1-7 [6364 kB]
+Get:9 http://spohr.debian.org/debian/ unstable/main libstdc++6 ia64 4.6.1-7 [436 kB]
+Get:10 http://spohr.debian.org/debian/ unstable/main libpipeline1 ia64 1.2.0-3 [47.8 kB]
+Get:11 http://spohr.debian.org/debian/ unstable/main libpcre3 ia64 8.12-4 [272 kB]
+Get:12 http://spohr.debian.org/debian/ unstable/main libdatrie1 ia64 0.2.4-3 [31.5 kB]
+Get:13 http://spohr.debian.org/debian/ unstable/main libexpat1 ia64 2.0.1-7 [213 kB]
+Get:14 http://spohr.debian.org/debian/ unstable/main libfreetype6 ia64 2.4.6-1 [614 kB]
+Get:15 http://spohr.debian.org/debian/ unstable/main ucf all 3.0025+nmu2 [70.6 kB]
+Get:16 http://spohr.debian.org/debian/ unstable/main ttf-dejavu-core all 2.33-1 [1550 kB]
+Get:17 http://spohr.debian.org/debian/ unstable/main fontconfig-config all 2.8.0-3 [221 kB]
+Get:18 http://spohr.debian.org/debian/ unstable/main libfontconfig1 ia64 2.8.0-3 [320 kB]
+Get:19 http://spohr.debian.org/debian/ unstable/main libgfortran3 ia64 4.6.1-7 [462 kB]
+Get:20 http://spohr.debian.org/debian/ unstable/main x11-common all 1:7.6+7 [275 kB]
+Get:21 http://spohr.debian.org/debian/ unstable/main libice6 ia64 2:1.0.7-2 [75.8 kB]
+Get:22 http://spohr.debian.org/debian/ unstable/main libpixman-1-0 ia64 0.22.2-1 [413 kB]
+Get:23 http://spohr.debian.org/debian/ unstable/main libpng12-0 ia64 1.2.46-3 [222 kB]
+Get:24 http://spohr.debian.org/debian/ unstable/main libxau6 ia64 1:1.0.6-3 [18.4 kB]
+Get:25 http://spohr.debian.org/debian/ unstable/main libxdmcp6 ia64 1:1.1.0-3 [25.8 kB]
+Get:26 http://spohr.debian.org/debian/ unstable/main libxcb1 ia64 1.7-3 [52.1 kB]
+Get:27 http://spohr.debian.org/debian/ unstable/main libx11-data all 2:1.4.4-1 [183 kB]
+Get:28 http://spohr.debian.org/debian/ unstable/main libx11-6 ia64 2:1.4.4-1 [1080 kB]
+Get:29 http://spohr.debian.org/debian/ unstable/main libxcb-render0 ia64 1.7-3 [18.1 kB]
+Get:30 http://spohr.debian.org/debian/ unstable/main libxcb-shm0 ia64 1.7-3 [10.4 kB]
+Get:31 http://spohr.debian.org/debian/ unstable/main libxrender1 ia64 1:0.9.6-2 [41.8 kB]
+Get:32 http://spohr.debian.org/debian/ unstable/main libcairo2 ia64 1.10.2-6.1 [1165 kB]
+Get:33 http://spohr.debian.org/debian/ unstable/main libglib2.0-0 ia64 2.28.6-1 [1973 kB]
+Get:34 http://spohr.debian.org/debian/ unstable/main libthai-data all 0.1.15-2 [201 kB]
+Get:35 http://spohr.debian.org/debian/ unstable/main libthai0 ia64 0.1.15-2 [47.4 kB]
+Get:36 http://spohr.debian.org/debian/ unstable/main libxft2 ia64 2.2.0-3 [77.5 kB]
+Get:37 http://spohr.debian.org/debian/ unstable/main fontconfig ia64 2.8.0-3 [340 kB]
+Get:38 http://spohr.debian.org/debian/ unstable/main libpango1.0-0 ia64 1.28.4-2 [559 kB]
+Get:39 http://spohr.debian.org/debian/ unstable/main libpcrecpp0 ia64 8.12-4 [116 kB]
+Get:40 http://spohr.debian.org/debian/ unstable/main libsm6 ia64 2:1.2.0-2 [36.0 kB]
+Get:41 http://spohr.debian.org/debian/ unstable/main libxext6 ia64 2:1.3.0-3 [68.0 kB]
+Get:42 http://spohr.debian.org/debian/ unstable/main libxss1 ia64 1:1.2.1-2 [19.0 kB]
+Get:43 http://spohr.debian.org/debian/ unstable/main libxt6 ia64 1:1.1.1-2 [286 kB]
+Get:44 http://spohr.debian.org/debian/ unstable/main bsdmainutils ia64 8.2.3 [238 kB]
+Get:45 http://spohr.debian.org/debian/ unstable/main groff-base ia64 1.21-6 [1402 kB]
+Get:46 http://spohr.debian.org/debian/ unstable/main man-db ia64 2.6.0.2-2 [1118 kB]
+Get:47 http://spohr.debian.org/debian/ unstable/main libmagic1 ia64 5.04-5+b1 [263 kB]
+Get:48 http://spohr.debian.org/debian/ unstable/main file ia64 5.04-5+b1 [52.0 kB]
+Get:49 http://spohr.debian.org/debian/ unstable/main gettext-base ia64 0.18.1.1-4 [173 kB]
+Get:50 http://spohr.debian.org/debian/ unstable/main libxml2 ia64 2.7.8.dfsg-4 [1177 kB]
+Get:51 http://spohr.debian.org/debian/ unstable/main html2text ia64 1.3.2a-15 [134 kB]
+Get:52 http://spohr.debian.org/debian/ unstable/main libcroco3 ia64 0.6.2-1 [155 kB]
+Get:53 http://spohr.debian.org/debian/ unstable/main libunistring0 ia64 0.9.3-4 [467 kB]
+Get:54 http://spohr.debian.org/debian/ unstable/main gettext ia64 0.18.1.1-4 [2441 kB]
+Get:55 http://spohr.debian.org/debian/ unstable/main intltool-debian all 0.35.0+20060710.1 [30.8 kB]
+Get:56 http://spohr.debian.org/debian/ unstable/main po-debconf all 1.0.16+nmu1 [223 kB]
+Get:57 http://spohr.debian.org/debian/ unstable/main debhelper all 8.9.4 [561 kB]
+Get:58 http://spohr.debian.org/debian/ unstable/main cdbs all 0.4.96 [75.8 kB]
+Get:59 http://spohr.debian.org/debian/ unstable/main dpatch all 2.0.31 [92.3 kB]
+Get:60 http://spohr.debian.org/debian/ unstable/main gfortran-4.6 ia64 4.6.1-7 [7147 kB]
+Get:61 http://spohr.debian.org/debian/ unstable/main gfortran ia64 4:4.6.1-2 [1120 B]
+Get:62 http://spohr.debian.org/debian/ unstable/main libblas3gf ia64 1.2.20110419-2 [313 kB]
+Get:63 http://spohr.debian.org/debian/ unstable/main libblas-dev ia64 1.2.20110419-2 [344 kB]
+Get:64 http://spohr.debian.org/debian/ unstable/main libbz2-dev ia64 1.0.5-6 [51.8 kB]
+Get:65 http://spohr.debian.org/debian/ unstable/main libjpeg62 ia64 6b1-2 [154 kB]
+Get:66 http://spohr.debian.org/debian/ unstable/main libjpeg8 ia64 8c-2 [240 kB]
+Get:67 http://spohr.debian.org/debian/ unstable/main libjpeg8-dev ia64 8c-2 [351 kB]
+Get:68 http://spohr.debian.org/debian/ unstable/main liblapack3gf ia64 3.3.1-1 [7288 kB]
+Get:69 http://spohr.debian.org/debian/ unstable/main liblapack-dev ia64 3.3.1-1 [8033 kB]
+Get:70 http://spohr.debian.org/debian/ unstable/main libncurses5-dev ia64 5.9-1 [614 kB]
+Get:71 http://spohr.debian.org/debian/ unstable/main libpaper1 ia64 1.1.24+nmu1 [22.9 kB]
+Get:72 http://spohr.debian.org/debian/ unstable/main libpaper-utils ia64 1.1.24+nmu1 [19.7 kB]
+Get:73 http://spohr.debian.org/debian/ unstable/main libpcre3-dev ia64 8.12-4 [362 kB]
+Get:74 http://spohr.debian.org/debian/ unstable/main zlib1g-dev ia64 1:1.2.3.4.dfsg-3 [224 kB]
+Get:75 http://spohr.debian.org/debian/ unstable/main libpng12-dev ia64 1.2.46-3 [306 kB]
+Get:76 http://spohr.debian.org/debian/ unstable/main libreadline6-dev ia64 6.2-2 [339 kB]
+Get:77 http://spohr.debian.org/debian/ unstable/main libreadline-dev ia64 6.2-2 [880 B]
+Get:78 http://spohr.debian.org/debian/ unstable/main libtiff4 ia64 3.9.5-1 [270 kB]
+Get:79 http://spohr.debian.org/debian/ unstable/main zip ia64 3.0-4 [445 kB]
+Get:80 http://spohr.debian.org/debian/ unstable/main unzip ia64 6.0-5 [263 kB]
+Get:81 http://spohr.debian.org/debian/ unstable/main xdg-utils all 1.1.0~rc1-2 [70.2 kB]
+Get:82 http://spohr.debian.org/debian/ unstable/main tcl8.5 ia64 8.5.10-1 [1902 kB]
+Get:83 http://spohr.debian.org/debian/ unstable/main tk8.5 ia64 8.5.10-1 [1520 kB]
+Get:84 http://spohr.debian.org/debian/ unstable/main r-base-core ia64 2.13.1-1 [16.3 MB]
+Get:85 http://spohr.debian.org/debian/ unstable/main r-base-dev all 2.13.1-1 [3490 B]
debconf: delaying package configuration, since apt-utils is not installed
-0 upgraded, 76 newly installed, 0 to remove and 10 not upgraded.
-Need to get 0 B/64.5 MB of archives.
-After this operation, 182 MB of additional disk space will be used.
+Fetched 88.6 MB in 7s (12.2 MB/s)
+(Reading database ... 10586 files and directories currently installed.)
+Preparing to replace libgomp1 4.6.1-4 (using .../libgomp1_4.6.1-7_ia64.deb) ...
+Unpacking replacement libgomp1 ...
+Preparing to replace gcc-4.6-base 4.6.1-4 (using .../gcc-4.6-base_4.6.1-7_ia64.deb) ...
+Unpacking replacement gcc-4.6-base ...
+Setting up gcc-4.6-base (4.6.1-7) ...
+(Reading database ... 10586 files and directories currently installed.)
+Preparing to replace libgcc1 1:4.6.1-4 (using .../libgcc1_1%3a4.6.1-7_ia64.deb) ...
+Unpacking replacement libgcc1 ...
+Setting up libgcc1 (1:4.6.1-7) ...
+(Reading database ... 10586 files and directories currently installed.)
+Preparing to replace cpp-4.6 4.6.1-4 (using .../cpp-4.6_4.6.1-7_ia64.deb) ...
+Unpacking replacement cpp-4.6 ...
+Preparing to replace libquadmath0 4.6.1-4 (using .../libquadmath0_4.6.1-7_ia64.deb) ...
+Unpacking replacement libquadmath0 ...
+Preparing to replace libstdc++6-4.6-dev 4.6.1-4 (using .../libstdc++6-4.6-dev_4.6.1-7_ia64.deb) ...
+Unpacking replacement libstdc++6-4.6-dev ...
+Preparing to replace g++-4.6 4.6.1-4 (using .../g++-4.6_4.6.1-7_ia64.deb) ...
+Unpacking replacement g++-4.6 ...
+Preparing to replace gcc-4.6 4.6.1-4 (using .../gcc-4.6_4.6.1-7_ia64.deb) ...
+Unpacking replacement gcc-4.6 ...
+Preparing to replace libstdc++6 4.6.1-4 (using .../libstdc++6_4.6.1-7_ia64.deb) ...
+Unpacking replacement libstdc++6 ...
+Setting up libstdc++6 (4.6.1-7) ...
+Selecting previously deselected package libpipeline1.
+(Reading database ... 10586 files and directories currently installed.)
+Unpacking libpipeline1 (from .../libpipeline1_1.2.0-3_ia64.deb) ...
+Selecting previously deselected package libpcre3.
+Unpacking libpcre3 (from .../libpcre3_8.12-4_ia64.deb) ...
+Selecting previously deselected package libdatrie1.
+Unpacking libdatrie1 (from .../libdatrie1_0.2.4-3_ia64.deb) ...
+Selecting previously deselected package libexpat1.
+Unpacking libexpat1 (from .../libexpat1_2.0.1-7_ia64.deb) ...
+Selecting previously deselected package libfreetype6.
+Unpacking libfreetype6 (from .../libfreetype6_2.4.6-1_ia64.deb) ...
+Selecting previously deselected package ucf.
+Unpacking ucf (from .../ucf_3.0025+nmu2_all.deb) ...
+Moving old data out of the way
+Selecting previously deselected package ttf-dejavu-core.
+Unpacking ttf-dejavu-core (from .../ttf-dejavu-core_2.33-1_all.deb) ...
+Selecting previously deselected package fontconfig-config.
+Unpacking fontconfig-config (from .../fontconfig-config_2.8.0-3_all.deb) ...
+Selecting previously deselected package libfontconfig1.
+Unpacking libfontconfig1 (from .../libfontconfig1_2.8.0-3_ia64.deb) ...
+Selecting previously deselected package libgfortran3.
+Unpacking libgfortran3 (from .../libgfortran3_4.6.1-7_ia64.deb) ...
+Selecting previously deselected package x11-common.
+Unpacking x11-common (from .../x11-common_1%3a7.6+7_all.deb) ...
+Selecting previously deselected package libice6.
+Unpacking libice6 (from .../libice6_2%3a1.0.7-2_ia64.deb) ...
+Selecting previously deselected package libpixman-1-0.
+Unpacking libpixman-1-0 (from .../libpixman-1-0_0.22.2-1_ia64.deb) ...
+Selecting previously deselected package libpng12-0.
+Unpacking libpng12-0 (from .../libpng12-0_1.2.46-3_ia64.deb) ...
+Selecting previously deselected package libxau6.
+Unpacking libxau6 (from .../libxau6_1%3a1.0.6-3_ia64.deb) ...
+Selecting previously deselected package libxdmcp6.
+Unpacking libxdmcp6 (from .../libxdmcp6_1%3a1.1.0-3_ia64.deb) ...
+Selecting previously deselected package libxcb1.
+Unpacking libxcb1 (from .../libxcb1_1.7-3_ia64.deb) ...
+Selecting previously deselected package libx11-data.
+Unpacking libx11-data (from .../libx11-data_2%3a1.4.4-1_all.deb) ...
+Selecting previously deselected package libx11-6.
+Unpacking libx11-6 (from .../libx11-6_2%3a1.4.4-1_ia64.deb) ...
+Selecting previously deselected package libxcb-render0.
+Unpacking libxcb-render0 (from .../libxcb-render0_1.7-3_ia64.deb) ...
+Selecting previously deselected package libxcb-shm0.
+Unpacking libxcb-shm0 (from .../libxcb-shm0_1.7-3_ia64.deb) ...
+Selecting previously deselected package libxrender1.
+Unpacking libxrender1 (from .../libxrender1_1%3a0.9.6-2_ia64.deb) ...
+Selecting previously deselected package libcairo2.
+Unpacking libcairo2 (from .../libcairo2_1.10.2-6.1_ia64.deb) ...
+Selecting previously deselected package libglib2.0-0.
+Unpacking libglib2.0-0 (from .../libglib2.0-0_2.28.6-1_ia64.deb) ...
+Selecting previously deselected package libthai-data.
+Unpacking libthai-data (from .../libthai-data_0.1.15-2_all.deb) ...
+Selecting previously deselected package libthai0.
+Unpacking libthai0 (from .../libthai0_0.1.15-2_ia64.deb) ...
+Selecting previously deselected package libxft2.
+Unpacking libxft2 (from .../libxft2_2.2.0-3_ia64.deb) ...
+Selecting previously deselected package fontconfig.
+Unpacking fontconfig (from .../fontconfig_2.8.0-3_ia64.deb) ...
+Selecting previously deselected package libpango1.0-0.
+Unpacking libpango1.0-0 (from .../libpango1.0-0_1.28.4-2_ia64.deb) ...
+Selecting previously deselected package libpcrecpp0.
+Unpacking libpcrecpp0 (from .../libpcrecpp0_8.12-4_ia64.deb) ...
+Selecting previously deselected package libsm6.
+Unpacking libsm6 (from .../libsm6_2%3a1.2.0-2_ia64.deb) ...
+Selecting previously deselected package libxext6.
+Unpacking libxext6 (from .../libxext6_2%3a1.3.0-3_ia64.deb) ...
+Selecting previously deselected package libxss1.
+Unpacking libxss1 (from .../libxss1_1%3a1.2.1-2_ia64.deb) ...
+Selecting previously deselected package libxt6.
+Unpacking libxt6 (from .../libxt6_1%3a1.1.1-2_ia64.deb) ...
Selecting previously deselected package bsdmainutils.
-(Reading database ... 10487 files and directories currently installed.)
-Unpacking bsdmainutils (from .../bsdmainutils_8.2.2_ia64.deb) ...
+Unpacking bsdmainutils (from .../bsdmainutils_8.2.3_ia64.deb) ...
Selecting previously deselected package groff-base.
-Unpacking groff-base (from .../groff-base_1.21-5_ia64.deb) ...
-Selecting previously deselected package libpipeline1.
-Unpacking libpipeline1 (from .../libpipeline1_1.2.0-2_ia64.deb) ...
+Unpacking groff-base (from .../groff-base_1.21-6_ia64.deb) ...
Selecting previously deselected package man-db.
-Unpacking man-db (from .../man-db_2.6.0.2-1_ia64.deb) ...
+Unpacking man-db (from .../man-db_2.6.0.2-2_ia64.deb) ...
Selecting previously deselected package libmagic1.
Unpacking libmagic1 (from .../libmagic1_5.04-5+b1_ia64.deb) ...
Selecting previously deselected package file.
Unpacking file (from .../file_5.04-5+b1_ia64.deb) ...
Selecting previously deselected package gettext-base.
-Unpacking gettext-base (from .../gettext-base_0.18.1.1-3_ia64.deb) ...
-Selecting previously deselected package libpcre3.
-Unpacking libpcre3 (from .../libpcre3_8.12-3_ia64.deb) ...
+Unpacking gettext-base (from .../gettext-base_0.18.1.1-4_ia64.deb) ...
Selecting previously deselected package libxml2.
-Unpacking libxml2 (from .../libxml2_2.7.8.dfsg-2+b1_ia64.deb) ...
-Selecting previously deselected package ucf.
-Unpacking ucf (from .../ucf_3.0025+nmu2_all.deb) ...
-Moving old data out of the way
+Unpacking libxml2 (from .../libxml2_2.7.8.dfsg-4_ia64.deb) ...
Selecting previously deselected package html2text.
Unpacking html2text (from .../html2text_1.3.2a-15_ia64.deb) ...
-Selecting previously deselected package libglib2.0-0.
-Unpacking libglib2.0-0 (from .../libglib2.0-0_2.28.6-1_ia64.deb) ...
Selecting previously deselected package libcroco3.
Unpacking libcroco3 (from .../libcroco3_0.6.2-1_ia64.deb) ...
Selecting previously deselected package libunistring0.
Unpacking libunistring0 (from .../libunistring0_0.9.3-4_ia64.deb) ...
Selecting previously deselected package gettext.
-Unpacking gettext (from .../gettext_0.18.1.1-3_ia64.deb) ...
+Unpacking gettext (from .../gettext_0.18.1.1-4_ia64.deb) ...
Selecting previously deselected package intltool-debian.
Unpacking intltool-debian (from .../intltool-debian_0.35.0+20060710.1_all.deb) ...
Selecting previously deselected package po-debconf.
Unpacking po-debconf (from .../po-debconf_1.0.16+nmu1_all.deb) ...
Selecting previously deselected package debhelper.
-Unpacking debhelper (from .../debhelper_8.1.6_all.deb) ...
+Unpacking debhelper (from .../debhelper_8.9.4_all.deb) ...
Selecting previously deselected package cdbs.
-Unpacking cdbs (from .../archives/cdbs_0.4.94_all.deb) ...
+Unpacking cdbs (from .../archives/cdbs_0.4.96_all.deb) ...
Selecting previously deselected package dpatch.
Unpacking dpatch (from .../archives/dpatch_2.0.31_all.deb) ...
-Selecting previously deselected package libexpat1.
-Unpacking libexpat1 (from .../libexpat1_2.0.1-7_ia64.deb) ...
-Selecting previously deselected package libfreetype6.
-Unpacking libfreetype6 (from .../libfreetype6_2.4.4-1_ia64.deb) ...
-Selecting previously deselected package ttf-dejavu-core.
-Unpacking ttf-dejavu-core (from .../ttf-dejavu-core_2.33-1_all.deb) ...
-Selecting previously deselected package fontconfig-config.
-Unpacking fontconfig-config (from .../fontconfig-config_2.8.0-2.2_all.deb) ...
-Selecting previously deselected package libfontconfig1.
-Unpacking libfontconfig1 (from .../libfontconfig1_2.8.0-2.2_ia64.deb) ...
-Selecting previously deselected package fontconfig.
-Unpacking fontconfig (from .../fontconfig_2.8.0-2.2_ia64.deb) ...
-Selecting previously deselected package libquadmath0.
-Unpacking libquadmath0 (from .../libquadmath0_4.6.0-10_ia64.deb) ...
-Selecting previously deselected package libgfortran3.
-Unpacking libgfortran3 (from .../libgfortran3_4.6.0-10_ia64.deb) ...
-Selecting previously deselected package gfortran-4.4.
-Unpacking gfortran-4.4 (from .../gfortran-4.4_4.4.6-3_ia64.deb) ...
+Selecting previously deselected package gfortran-4.6.
+Unpacking gfortran-4.6 (from .../gfortran-4.6_4.6.1-7_ia64.deb) ...
Selecting previously deselected package gfortran.
-Unpacking gfortran (from .../gfortran_4%3a4.4.5-9_ia64.deb) ...
+Unpacking gfortran (from .../gfortran_4%3a4.6.1-2_ia64.deb) ...
Selecting previously deselected package libblas3gf.
-Unpacking libblas3gf (from .../libblas3gf_1.2-8_ia64.deb) ...
+Unpacking libblas3gf (from .../libblas3gf_1.2.20110419-2_ia64.deb) ...
Selecting previously deselected package libblas-dev.
-Unpacking libblas-dev (from .../libblas-dev_1.2-8_ia64.deb) ...
+Unpacking libblas-dev (from .../libblas-dev_1.2.20110419-2_ia64.deb) ...
Selecting previously deselected package libbz2-dev.
Unpacking libbz2-dev (from .../libbz2-dev_1.0.5-6_ia64.deb) ...
-Selecting previously deselected package libpixman-1-0.
-Unpacking libpixman-1-0 (from .../libpixman-1-0_0.21.8-1_ia64.deb) ...
-Selecting previously deselected package libpng12-0.
-Unpacking libpng12-0 (from .../libpng12-0_1.2.44-2_ia64.deb) ...
-Selecting previously deselected package libxau6.
-Unpacking libxau6 (from .../libxau6_1%3a1.0.6-1_ia64.deb) ...
-Selecting previously deselected package libxdmcp6.
-Unpacking libxdmcp6 (from .../libxdmcp6_1%3a1.1.0-1_ia64.deb) ...
-Selecting previously deselected package libxcb1.
-Unpacking libxcb1 (from .../libxcb1_1.7-2_ia64.deb) ...
-Selecting previously deselected package libx11-data.
-Unpacking libx11-data (from .../libx11-data_2%3a1.4.3-1_all.deb) ...
-Selecting previously deselected package libx11-6.
-Unpacking libx11-6 (from .../libx11-6_2%3a1.4.3-1_ia64.deb) ...
-Selecting previously deselected package libxcb-render0.
-Unpacking libxcb-render0 (from .../libxcb-render0_1.7-2_ia64.deb) ...
-Selecting previously deselected package libxcb-shm0.
-Unpacking libxcb-shm0 (from .../libxcb-shm0_1.7-2_ia64.deb) ...
-Selecting previously deselected package libxrender1.
-Unpacking libxrender1 (from .../libxrender1_1%3a0.9.6-1_ia64.deb) ...
-Selecting previously deselected package libcairo2.
-Unpacking libcairo2 (from .../libcairo2_1.10.2-6_ia64.deb) ...
-Selecting previously deselected package libdatrie1.
-Unpacking libdatrie1 (from .../libdatrie1_0.2.4-2_ia64.deb) ...
-Selecting previously deselected package x11-common.
-Unpacking x11-common (from .../x11-common_1%3a7.6+6_all.deb) ...
-Selecting previously deselected package libice6.
-Unpacking libice6 (from .../libice6_2%3a1.0.7-1_ia64.deb) ...
Selecting previously deselected package libjpeg62.
-Unpacking libjpeg62 (from .../libjpeg62_6b1-1_ia64.deb) ...
-Selecting previously deselected package libjpeg62-dev.
-Unpacking libjpeg62-dev (from .../libjpeg62-dev_6b1-1_ia64.deb) ...
+Unpacking libjpeg62 (from .../libjpeg62_6b1-2_ia64.deb) ...
+Selecting previously deselected package libjpeg8.
+Unpacking libjpeg8 (from .../libjpeg8_8c-2_ia64.deb) ...
+Selecting previously deselected package libjpeg8-dev.
+Unpacking libjpeg8-dev (from .../libjpeg8-dev_8c-2_ia64.deb) ...
Selecting previously deselected package liblapack3gf.
-Unpacking liblapack3gf (from .../liblapack3gf_3.2.1-8_ia64.deb) ...
+Unpacking liblapack3gf (from .../liblapack3gf_3.3.1-1_ia64.deb) ...
Selecting previously deselected package liblapack-dev.
-Unpacking liblapack-dev (from .../liblapack-dev_3.2.1-8_ia64.deb) ...
+Unpacking liblapack-dev (from .../liblapack-dev_3.3.1-1_ia64.deb) ...
Selecting previously deselected package libncurses5-dev.
Unpacking libncurses5-dev (from .../libncurses5-dev_5.9-1_ia64.deb) ...
-Selecting previously deselected package libthai-data.
-Unpacking libthai-data (from .../libthai-data_0.1.15-1_all.deb) ...
-Selecting previously deselected package libthai0.
-Unpacking libthai0 (from .../libthai0_0.1.15-1_ia64.deb) ...
-Selecting previously deselected package libxft2.
-Unpacking libxft2 (from .../libxft2_2.2.0-2_ia64.deb) ...
-Selecting previously deselected package libpango1.0-0.
-Unpacking libpango1.0-0 (from .../libpango1.0-0_1.28.3-6_ia64.deb) ...
Selecting previously deselected package libpaper1.
Unpacking libpaper1 (from .../libpaper1_1.1.24+nmu1_ia64.deb) ...
Selecting previously deselected package libpaper-utils.
Unpacking libpaper-utils (from .../libpaper-utils_1.1.24+nmu1_ia64.deb) ...
-Selecting previously deselected package libpcrecpp0.
-Unpacking libpcrecpp0 (from .../libpcrecpp0_8.12-3_ia64.deb) ...
Selecting previously deselected package libpcre3-dev.
-Unpacking libpcre3-dev (from .../libpcre3-dev_8.12-3_ia64.deb) ...
+Unpacking libpcre3-dev (from .../libpcre3-dev_8.12-4_ia64.deb) ...
Selecting previously deselected package zlib1g-dev.
Unpacking zlib1g-dev (from .../zlib1g-dev_1%3a1.2.3.4.dfsg-3_ia64.deb) ...
Selecting previously deselected package libpng12-dev.
-Unpacking libpng12-dev (from .../libpng12-dev_1.2.44-2_ia64.deb) ...
+Unpacking libpng12-dev (from .../libpng12-dev_1.2.46-3_ia64.deb) ...
Selecting previously deselected package libreadline6-dev.
Unpacking libreadline6-dev (from .../libreadline6-dev_6.2-2_ia64.deb) ...
Selecting previously deselected package libreadline-dev.
Unpacking libreadline-dev (from .../libreadline-dev_6.2-2_ia64.deb) ...
-Selecting previously deselected package libsm6.
-Unpacking libsm6 (from .../libsm6_2%3a1.2.0-1_ia64.deb) ...
Selecting previously deselected package libtiff4.
Unpacking libtiff4 (from .../libtiff4_3.9.5-1_ia64.deb) ...
-Selecting previously deselected package libxext6.
-Unpacking libxext6 (from .../libxext6_2%3a1.3.0-1_ia64.deb) ...
-Selecting previously deselected package libxss1.
-Unpacking libxss1 (from .../libxss1_1%3a1.2.1-1_ia64.deb) ...
-Selecting previously deselected package libxt6.
-Unpacking libxt6 (from .../libxt6_1%3a1.1.1-1_ia64.deb) ...
Selecting previously deselected package zip.
-Unpacking zip (from .../archives/zip_3.0-3_ia64.deb) ...
+Unpacking zip (from .../archives/zip_3.0-4_ia64.deb) ...
Selecting previously deselected package unzip.
-Unpacking unzip (from .../archives/unzip_6.0-4_ia64.deb) ...
+Unpacking unzip (from .../archives/unzip_6.0-5_ia64.deb) ...
Selecting previously deselected package xdg-utils.
Unpacking xdg-utils (from .../xdg-utils_1.1.0~rc1-2_all.deb) ...
Selecting previously deselected package tcl8.5.
-Unpacking tcl8.5 (from .../tcl8.5_8.5.9-2_ia64.deb) ...
+Unpacking tcl8.5 (from .../tcl8.5_8.5.10-1_ia64.deb) ...
Selecting previously deselected package tk8.5.
-Unpacking tk8.5 (from .../tk8.5_8.5.9-2_ia64.deb) ...
+Unpacking tk8.5 (from .../tk8.5_8.5.10-1_ia64.deb) ...
Selecting previously deselected package r-base-core.
-Unpacking r-base-core (from .../r-base-core_2.13.0-2_ia64.deb) ...
+Unpacking r-base-core (from .../r-base-core_2.13.1-1_ia64.deb) ...
Selecting previously deselected package r-base-dev.
-Unpacking r-base-dev (from .../r-base-dev_2.13.0-2_all.deb) ...
-Setting up bsdmainutils (8.2.2) ...
+Unpacking r-base-dev (from .../r-base-dev_2.13.1-1_all.deb) ...
+Setting up libgomp1 (4.6.1-7) ...
+Setting up cpp-4.6 (4.6.1-7) ...
+Setting up libquadmath0 (4.6.1-7) ...
+Setting up gcc-4.6 (4.6.1-7) ...
+Setting up libpipeline1 (1.2.0-3) ...
+Setting up libpcre3 (8.12-4) ...
+Setting up libdatrie1 (0.2.4-3) ...
+Setting up libexpat1 (2.0.1-7) ...
+Setting up libfreetype6 (2.4.6-1) ...
+Setting up ucf (3.0025+nmu2) ...
+Setting up ttf-dejavu-core (2.33-1) ...
+Setting up fontconfig-config (2.8.0-3) ...
+Setting up libfontconfig1 (2.8.0-3) ...
+Setting up libgfortran3 (4.6.1-7) ...
+Setting up x11-common (1:7.6+7) ...
+All runlevel operations denied by policy
+invoke-rc.d: policy-rc.d denied execution of start.
+Setting up libice6 (2:1.0.7-2) ...
+Setting up libpixman-1-0 (0.22.2-1) ...
+Setting up libpng12-0 (1.2.46-3) ...
+Setting up libxau6 (1:1.0.6-3) ...
+Setting up libxdmcp6 (1:1.1.0-3) ...
+Setting up libxcb1 (1.7-3) ...
+Setting up libx11-data (2:1.4.4-1) ...
+Setting up libx11-6 (2:1.4.4-1) ...
+Setting up libxcb-render0 (1.7-3) ...
+Setting up libxcb-shm0 (1.7-3) ...
+Setting up libxrender1 (1:0.9.6-2) ...
+Setting up libcairo2 (1.10.2-6.1) ...
+Setting up libglib2.0-0 (2.28.6-1) ...
+No schema files found: doing nothing.
+Setting up libthai-data (0.1.15-2) ...
+Setting up libthai0 (0.1.15-2) ...
+Setting up libxft2 (2.2.0-3) ...
+Setting up fontconfig (2.8.0-3) ...
+Cleaning up old fontconfig caches... done.
+Regenerating fonts cache... done.
+Setting up libpango1.0-0 (1.28.4-2) ...
+Setting up libpcrecpp0 (8.12-4) ...
+Setting up libsm6 (2:1.2.0-2) ...
+Setting up libxext6 (2:1.3.0-3) ...
+Setting up libxss1 (1:1.2.1-2) ...
+Setting up libxt6 (1:1.1.1-2) ...
+Setting up bsdmainutils (8.2.3) ...
update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode.
update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode.
-Setting up groff-base (1.21-5) ...
-Setting up libpipeline1 (1.2.0-2) ...
-Setting up man-db (2.6.0.2-1) ...
+Setting up groff-base (1.21-6) ...
+Setting up man-db (2.6.0.2-2) ...
Building database of manual pages ...
Setting up libmagic1 (5.04-5+b1) ...
Setting up file (5.04-5+b1) ...
-Setting up gettext-base (0.18.1.1-3) ...
-Setting up libpcre3 (8.12-3) ...
-Setting up libxml2 (2.7.8.dfsg-2+b1) ...
-Setting up ucf (3.0025+nmu2) ...
+Setting up gettext-base (0.18.1.1-4) ...
+Setting up libxml2 (2.7.8.dfsg-4) ...
Setting up html2text (1.3.2a-15) ...
-Setting up libglib2.0-0 (2.28.6-1) ...
-No schema files found: doing nothing.
Setting up libcroco3 (0.6.2-1) ...
Setting up libunistring0 (0.9.3-4) ...
-Setting up gettext (0.18.1.1-3) ...
+Setting up gettext (0.18.1.1-4) ...
Setting up intltool-debian (0.35.0+20060710.1) ...
Setting up po-debconf (1.0.16+nmu1) ...
-Setting up debhelper (8.1.6) ...
-Setting up cdbs (0.4.94) ...
+Setting up debhelper (8.9.4) ...
+Setting up cdbs (0.4.96) ...
Setting up dpatch (2.0.31) ...
-Setting up libexpat1 (2.0.1-7) ...
-Setting up libfreetype6 (2.4.4-1) ...
-Setting up ttf-dejavu-core (2.33-1) ...
-Setting up fontconfig-config (2.8.0-2.2) ...
-Setting up libfontconfig1 (2.8.0-2.2) ...
-Setting up fontconfig (2.8.0-2.2) ...
-Cleaning up old fontconfig caches... done.
-Regenerating fonts cache... done.
-Setting up libquadmath0 (4.6.0-10) ...
-Setting up libgfortran3 (4.6.0-10) ...
-Setting up gfortran-4.4 (4.4.6-3) ...
-Setting up gfortran (4:4.4.5-9) ...
+Setting up gfortran-4.6 (4.6.1-7) ...
+Setting up gfortran (4:4.6.1-2) ...
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode.
-Setting up libblas3gf (1.2-8) ...
+Setting up libblas3gf (1.2.20110419-2) ...
update-alternatives: using /usr/lib/libblas/libblas.so.3gf to provide /usr/lib/libblas.so.3gf (libblas.so.3gf) in auto mode.
-Setting up libblas-dev (1.2-8) ...
+Setting up libblas-dev (1.2.20110419-2) ...
update-alternatives: using /usr/lib/libblas/libblas.so to provide /usr/lib/libblas.so (libblas.so) in auto mode.
Setting up libbz2-dev (1.0.5-6) ...
-Setting up libpixman-1-0 (0.21.8-1) ...
-Setting up libpng12-0 (1.2.44-2) ...
-Setting up libxau6 (1:1.0.6-1) ...
-Setting up libxdmcp6 (1:1.1.0-1) ...
-Setting up libxcb1 (1.7-2) ...
-Setting up libx11-data (2:1.4.3-1) ...
-Setting up libx11-6 (2:1.4.3-1) ...
-Setting up libxcb-render0 (1.7-2) ...
-Setting up libxcb-shm0 (1.7-2) ...
-Setting up libxrender1 (1:0.9.6-1) ...
-Setting up libcairo2 (1.10.2-6) ...
-Setting up libdatrie1 (0.2.4-2) ...
-Setting up x11-common (1:7.6+6) ...
-All runlevel operations denied by policy
-invoke-rc.d: policy-rc.d denied execution of start.
-Setting up libice6 (2:1.0.7-1) ...
-Setting up libjpeg62 (6b1-1) ...
-Setting up libjpeg62-dev (6b1-1) ...
-Setting up liblapack3gf (3.2.1-8) ...
+Setting up libjpeg62 (6b1-2) ...
+Setting up libjpeg8 (8c-2) ...
+Setting up libjpeg8-dev (8c-2) ...
+Setting up liblapack3gf (3.3.1-1) ...
update-alternatives: using /usr/lib/lapack/liblapack.so.3gf to provide /usr/lib/liblapack.so.3gf (liblapack.so.3gf) in auto mode.
-Setting up liblapack-dev (3.2.1-8) ...
+Setting up liblapack-dev (3.3.1-1) ...
update-alternatives: using /usr/lib/lapack/liblapack.so to provide /usr/lib/liblapack.so (liblapack.so) in auto mode.
Setting up libncurses5-dev (5.9-1) ...
-Setting up libthai-data (0.1.15-1) ...
-Setting up libthai0 (0.1.15-1) ...
-Setting up libxft2 (2.2.0-2) ...
-Setting up libpango1.0-0 (1.28.3-6) ...
Setting up libpaper1 (1.1.24+nmu1) ...
Creating config file /etc/papersize with new version
Setting up libpaper-utils (1.1.24+nmu1) ...
-Setting up libpcrecpp0 (8.12-3) ...
-Setting up libpcre3-dev (8.12-3) ...
+Setting up libpcre3-dev (8.12-4) ...
Setting up zlib1g-dev (1:1.2.3.4.dfsg-3) ...
-Setting up libpng12-dev (1.2.44-2) ...
+Setting up libpng12-dev (1.2.46-3) ...
Setting up libreadline6-dev (6.2-2) ...
Setting up libreadline-dev (6.2-2) ...
-Setting up libsm6 (2:1.2.0-1) ...
Setting up libtiff4 (3.9.5-1) ...
-Setting up libxext6 (2:1.3.0-1) ...
-Setting up libxss1 (1:1.2.1-1) ...
-Setting up libxt6 (1:1.1.1-1) ...
-Setting up zip (3.0-3) ...
-Setting up unzip (6.0-4) ...
+Setting up zip (3.0-4) ...
+Setting up unzip (6.0-5) ...
Setting up xdg-utils (1.1.0~rc1-2) ...
-Setting up tcl8.5 (8.5.9-2) ...
+Setting up tcl8.5 (8.5.10-1) ...
update-alternatives: using /usr/bin/tclsh8.5 to provide /usr/bin/tclsh (tclsh) in auto mode.
-Setting up tk8.5 (8.5.9-2) ...
+Setting up tk8.5 (8.5.10-1) ...
update-alternatives: using /usr/bin/wish8.5 to provide /usr/bin/wish (wish) in auto mode.
-Setting up r-base-core (2.13.0-2) ...
+Setting up r-base-core (2.13.1-1) ...
Setting R_PAPERSIZE_USER default to 'a4'
Creating config file /etc/R/Renviron with new version
-Setting up r-base-dev (2.13.0-2) ...
+Setting up r-base-dev (2.13.1-1) ...
+Setting up libstdc++6-4.6-dev (4.6.1-7) ...
+Setting up g++-4.6 (4.6.1-7) ...
Removing negative dependencies:
Reading package lists...
Building dependency tree...
Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 10 not upgraded.
+0 upgraded, 0 newly installed, 0 to remove and 25 not upgraded.
Checking correctness of dependencies...
-Kernel: Linux 2.6.32-bpo.5-mckinley ia64 (ia64)
-Toolchain package versions: binutils_2.21.51.20110523-1 dpkg-dev_1.16.0.3 g++-4.4_4.4.6-3 gcc-4.4_4.4.6-3 libc6.1-dev_2.13-4 libstdc++6_4.6.0-10 libstdc++6-4.4-dev_4.4.6-3 linux-libc-dev_2.6.38-5
-Package versions: apt_0.8.14.1 base-files_6.3 base-passwd_3.5.22 bash_4.1-3 binutils_2.21.51.20110523-1 bsdmainutils_8.2.2 bsdutils_1:2.17.2-9.1 build-essential_11.5 bzip2_1.0.5-6 cdbs_0.4.94 coreutils_8.5-1 cpp_4:4.4.5-9 cpp-4.4_4.4.6-3 dash_0.5.5.1-7.4 debconf_1.5.39 debfoster_2.7-1.1 debhelper_8.1.6 debian-archive-keyring_2010.08.28 debianutils_3.4.4 diffutils_1:3.0-1 dpatch_2.0.31 dpkg_1.16.0.3 dpkg-dev_1.16.0.3 e2fslibs_1.41.12-4 e2fsprogs_1.41.12-4 fakeroot_1.15.1-1 file_5.04-5+b1 findutils_4.4.2-1+b1 fontconfig_2.8.0-2.2 fontconfig-config_2.8.0-2.2 g++_4:4.4.5-9 g++-4.4_4.4.6-3 gcc_4:4.4.5-9 gcc-4.4_4.4.6-3 gcc-4.4-base_4.4.6-3 gcc-4.6-base_4.6.0-10 gettext_0.18.1.1-3 gettext-base_0.18.1.1-3 gfortran_4:4.4.5-9 gfortran-4.4_4.4.6-3 gnupg_1.4.11-3 gpgv_1.4.11-3 grep_2.6.3-3 groff-base_1.21-5 gzip_1.3.12-9 hostname_3.06 html2text_1.3.2a-15 initscripts_2.88dsf-13.2 insserv_1.14.0-2.1 intltool-debian_0.35.0+20060710.1 libacl1_2.2.49-5 libattr1_1:2.4.44-3 libblas-dev_1.2-8 libblas3gf_1.2-8 libblkid1_2.17.2-9.1 libbz2-1.0_1.0.5-6 libbz2-dev_1.0.5-6 libc-bin_2.13-4 libc-dev-bin_2.13-4 libc6.1_2.13-4 libc6.1-dev_2.13-4 libcairo2_1.10.2-6 libcomerr2_1.41.12-4 libcroco3_0.6.2-1 libdatrie1_0.2.4-2 libdb5.1_5.1.25-10 libdpkg-perl_1.16.0.3 libexpat1_2.0.1-7 libfontconfig1_2.8.0-2.2 libfreetype6_2.4.4-1 libgc1c2_1:7.1-8 libgcc1_1:4.6.0-10 libgdbm3_1.8.3-9 libgfortran3_4.6.0-10 libglib2.0-0_2.28.6-1 libgmp10_2:5.0.1+dfsg-7 libgomp1_4.6.0-10 libice6_2:1.0.7-1 libjpeg62_6b1-1 libjpeg62-dev_6b1-1 liblapack-dev_3.2.1-8 liblapack3gf_3.2.1-8 liblzma2_5.0.0-2 libmagic1_5.04-5+b1 libmpfr4_3.0.1-3 libncurses5_5.9-1 libncurses5-dev_5.9-1 libpam-modules_1.1.2-3 libpam-runtime_1.1.2-3 libpam0g_1.1.2-3 libpango1.0-0_1.28.3-6 libpaper-utils_1.1.24+nmu1 libpaper1_1.1.24+nmu1 libpcre3_8.12-3 libpcre3-dev_8.12-3 libpcrecpp0_8.12-3 libpipeline1_1.2.0-2 libpixman-1-0_0.21.8-1 libpng12-0_1.2.44-2 libpng12-dev_1.2.44-2 libquadmath0_4.6.0-10 libreadline-dev_6.2-2 libreadline6_6.2-2 libreadline6-dev_6.2-2 libselinux1_2.0.98-1+b1 libsepol1_2.0.42-1 libslang2_2.2.4-2 libsm6_2:1.2.0-1 libss2_1.41.12-4 libstdc++6_4.6.0-10 libstdc++6-4.4-dev_4.4.6-3 libthai-data_0.1.15-1 libthai0_0.1.15-1 libtiff4_3.9.5-1 libtimedate-perl_1.2000-1 libunistring0_0.9.3-4 libunwind7_0.99-0.2 libunwind7-dev_0.99-0.2 libusb-0.1-4_2:0.1.12-17 libuuid1_2.17.2-9.1 libx11-6_2:1.4.3-1 libx11-data_2:1.4.3-1 libxau6_1:1.0.6-1 libxcb-render0_1.7-2 libxcb-shm0_1.7-2 libxcb1_1.7-2 libxdmcp6_1:1.1.0-1 libxext6_2:1.3.0-1 libxft2_2.2.0-2 libxml2_2.7.8.dfsg-2+b1 libxrender1_1:0.9.6-1 libxss1_1:1.2.1-1 libxt6_1:1.1.1-1 linux-libc-dev_2.6.38-5 login_1:4.1.4.2+svn3283-3 lsb-base_3.2-27 make_3.81-8.1 man-db_2.6.0.2-1 mawk_1.3.3-15 mount_2.17.2-9.1 ncurses-base_5.9-1 ncurses-bin_5.9-1 passwd_1:4.1.4.2+svn3283-3 patch_2.6.1-1 perl_5.12.3-7 perl-base_5.12.3-7 perl-modules_5.12.3-7 po-debconf_1.0.16+nmu1 r-base-core_2.13.0-2 r-base-dev_2.13.0-2 readline-common_6.2-1 sed_4.2.1-9 sensible-utils_0.0.6 sudo_1.7.4p6-1 sysv-rc_2.88dsf-13.2 sysvinit_2.88dsf-13.2 sysvinit-utils_2.88dsf-13.2 tar_1.25-3 tcl8.5_8.5.9-2 tk8.5_8.5.9-2 ttf-dejavu-core_2.33-1 tzdata_2011g-1 ucf_3.0025+nmu2 unzip_6.0-4 util-linux_2.17.2-9.1 x11-common_1:7.6+6 xdg-utils_1.1.0~rc1-2 xz-utils_5.0.0-2 zip_3.0-3 zlib1g_1:1.2.3.4.dfsg-3 zlib1g-dev_1:1.2.3.4.dfsg-3
+Kernel: Linux 2.6.32-5-mckinley ia64 (ia64)
+Toolchain package versions: binutils_2.21.53.20110720-1 dpkg-dev_1.16.0.3 g++-4.6_4.6.1-7 gcc-4.6_4.6.1-7 libc6.1-dev_2.13-10 libstdc++6_4.6.1-7 libstdc++6-4.6-dev_4.6.1-7 linux-libc-dev_2.6.39-3
+Package versions: apt_0.8.15.2 base-files_6.4 base-passwd_3.5.23 bash_4.1-3 binutils_2.21.53.20110720-1 bsdmainutils_8.2.3 bsdutils_1:2.19.1-4 build-essential_11.5 bzip2_1.0.5-6 cdbs_0.4.96 coreutils_8.5-1 cpp_4:4.6.1-2 cpp-4.6_4.6.1-7 dash_0.5.5.1-7.4 debconf_1.5.40 debfoster_2.7-1.1 debhelper_8.9.4 debian-archive-keyring_2010.08.28 debianutils_4.0.2 diffutils_1:3.0-1 dpatch_2.0.31 dpkg_1.16.0.3 dpkg-dev_1.16.0.3 e2fslibs_1.42~WIP-2011-07-02-1 e2fsprogs_1.42~WIP-2011-07-02-1 fakeroot_1.16-1 file_5.04-5+b1 findutils_4.4.2-1+b1 fontconfig_2.8.0-3 fontconfig-config_2.8.0-3 g++_4:4.6.1-2 g++-4.6_4.6.1-7 gcc_4:4.6.1-2 gcc-4.4-base_4.4.6-6 gcc-4.5-base_4.5.3-3 gcc-4.6_4.6.1-7 gcc-4.6-base_4.6.1-7 gettext_0.18.1.1-4 gettext-base_0.18.1.1-4 gfortran_4:4.6.1-2 gfortran-4.6_4.6.1-7 gnupg_1.4.11-3 gpgv_1.4.11-3 grep_2.9-1 groff-base_1.21-6 gzip_1.4-1 hostname_3.06 html2text_1.3.2a-15 initscripts_2.88dsf-13.11 insserv_1.14.0-2.1 intltool-debian_0.35.0+20060710.1 libacl1_2.2.51-3 libattr1_1:2.4.46-3 libblas-dev_1.2.20110419-2 libblas3gf_1.2.20110419-2 libblkid1_2.19.1-4 libbz2-1.0_1.0.5-6 libbz2-dev_1.0.5-6 libc-bin_2.13-10 libc-dev-bin_2.13-10 libc6.1_2.13-10 libc6.1-dev_2.13-10 libcairo2_1.10.2-6.1 libcloog-ppl0_0.15.9-3 libcomerr2_1.42~WIP-2011-07-02-1 libcroco3_0.6.2-1 libdatrie1_0.2.4-3 libdb5.1_5.1.25-11 libdpkg-perl_1.16.0.3 libexpat1_2.0.1-7 libfontconfig1_2.8.0-3 libfreetype6_2.4.6-1 libgc1c2_1:7.1-8 libgcc1_1:4.6.1-7 libgdbm3_1.8.3-10 libgfortran3_4.6.1-7 libglib2.0-0_2.28.6-1 libgmp10_2:5.0.1+dfsg-7 libgmpxx4ldbl_2:5.0.1+dfsg-7 libgomp1_4.6.1-7 libice6_2:1.0.7-2 libjpeg62_6b1-2 libjpeg8_8c-2 libjpeg8-dev_8c-2 liblapack-dev_3.3.1-1 liblapack3gf_3.3.1-1 liblzma2_5.0.0-2 libmagic1_5.04-5+b1 libmount1_2.19.1-4 libmpc2_0.9-3 libmpfr4_3.0.1-4 libncurses5_5.9-1 libncurses5-dev_5.9-1 libpam-modules_1.1.3-2 libpam-modules-bin_1.1.3-2 libpam-runtime_1.1.3-2 libpam0g_1.1.3-2 libpango1.0-0_1.28.4-2 libpaper-utils_1.1.24+nmu1 libpaper1_1.1.24+nmu1 libpcre3_8.12-4 libpcre3-dev_8.12-4 libpcrecpp0_8.12-4 libpipeline1_1.2.0-3 libpixman-1-0_0.22.2-1 libpng12-0_1.2.46-3 libpng12-dev_1.2.46-3 libppl-c4_0.11.2-4 libppl9_0.11.2-4 libpwl5_0.11.2-4 libquadmath0_4.6.1-7 libreadline-dev_6.2-2 libreadline6_6.2-2 libreadline6-dev_6.2-2 libselinux1_2.0.98-1.1 libsepol1_2.0.42-1 libslang2_2.2.4-2 libsm6_2:1.2.0-2 libss2_1.42~WIP-2011-07-02-1 libstdc++6_4.6.1-7 libstdc++6-4.6-dev_4.6.1-7 libthai-data_0.1.15-2 libthai0_0.1.15-2 libtiff4_3.9.5-1 libtimedate-perl_1.2000-1 libunistring0_0.9.3-4 libunwind7_0.99-0.3 libunwind7-dev_0.99-0.3 libusb-0.1-4_2:0.1.12-18 libuuid1_2.19.1-4 libx11-6_2:1.4.4-1 libx11-data_2:1.4.4-1 libxau6_1:1.0.6-3 libxcb-render0_1.7-3 libxcb-shm0_1.7-3 libxcb1_1.7-3 libxdmcp6_1:1.1.0-3 libxext6_2:1.3.0-3 libxft2_2.2.0-3 libxml2_2.7.8.dfsg-4 libxrender1_1:0.9.6-2 libxss1_1:1.2.1-2 libxt6_1:1.1.1-2 linux-libc-dev_2.6.39-3 login_1:4.1.4.2+svn3283-3 lsb-base_3.2-27 make_3.81-8.1 man-db_2.6.0.2-2 mawk_1.3.3-15 mount_2.19.1-4 multiarch-support_2.13-10 ncurses-base_5.9-1 ncurses-bin_5.9-1 passwd_1:4.1.4.2+svn3283-3 patch_2.6.1-2 perl_5.12.4-1 perl-base_5.12.4-1 perl-modules_5.12.4-1 po-debconf_1.0.16+nmu1 r-base-core_2.13.1-1 r-base-dev_2.13.1-1 readline-common_6.2-2 sed_4.2.1-9 sensible-utils_0.0.6 sudo_1.7.4p6-1 sysv-rc_2.88dsf-13.11 sysvinit_2.88dsf-13.11 sysvinit-utils_2.88dsf-13.11 tar_1.25-3 tcl8.5_8.5.10-1 tk8.5_8.5.10-1 ttf-dejavu-core_2.33-1 tzdata_2011h-3 ucf_3.0025+nmu2 unzip_6.0-5 util-linux_2.19.1-4 x11-common_1:7.6+7 xdg-utils_1.1.0~rc1-2 xz-utils_5.0.0-2 zip_3.0-4 zlib1g_1:1.2.3.4.dfsg-3 zlib1g-dev_1:1.2.3.4.dfsg-3
┌──────────────────────────────────────────────────────────────────────────────┐
│ Build │
@@ -465,14 +589,13 @@ Package versions: apt_0.8.14.1 base-files_6.3 base-passwd_3.5.22 bash_4.1-3 binu
Unpack source
─────────────
-Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/Source/Package.pm line 258.
gpgv: keyblock resource `/home/buildd/.gnupg/trustedkeys.gpg': file open error
-gpgv: Signature made Thu Jun 2 04:18:41 2011 UTC using RSA key ID 2295D502
+gpgv: Signature made Sun Aug 14 11:36:35 2011 UTC using RSA key ID 2295D502
gpgv: Can't check signature: public key not found
-dpkg-source: warning: failed to verify signature on ./r-bioc-limma_3.8.2-1.dsc
-dpkg-source: info: extracting r-bioc-limma in r-bioc-limma-3.8.2
-dpkg-source: info: unpacking r-bioc-limma_3.8.2.orig.tar.gz
-dpkg-source: info: applying r-bioc-limma_3.8.2-1.diff.gz
+dpkg-source: warning: failed to verify signature on ./r-bioc-limma_3.8.3-1.dsc
+dpkg-source: info: extracting r-bioc-limma in r-bioc-limma-3.8.3
+dpkg-source: info: unpacking r-bioc-limma_3.8.3.orig.tar.gz
+dpkg-source: info: applying r-bioc-limma_3.8.3-1.diff.gz
Check disc space
────────────────
@@ -481,33 +604,24 @@ Check disc space
dpkg-buildpackage
─────────────────
-Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
dpkg-buildpackage: export CFLAGS from dpkg-buildflags (origin: vendor): -g -O2
dpkg-buildpackage: export CPPFLAGS from dpkg-buildflags (origin: vendor):
dpkg-buildpackage: export CXXFLAGS from dpkg-buildflags (origin: vendor): -g -O2
dpkg-buildpackage: export FFLAGS from dpkg-buildflags (origin: vendor): -g -O2
dpkg-buildpackage: export LDFLAGS from dpkg-buildflags (origin: vendor):
dpkg-buildpackage: source package r-bioc-limma
-dpkg-buildpackage: source version 3.8.2-1
- dpkg-source --before-build r-bioc-limma-3.8.2
+dpkg-buildpackage: source version 3.8.3-1
+ dpkg-source --before-build r-bioc-limma-3.8.3
dpkg-buildpackage: host architecture ia64
fakeroot debian/rules clean
-Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
-Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
-Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
-Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
test -x debian/rules
dh_testroot
/usr/bin/make -f debian/rules reverse-config
-Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
-Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
-Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
-Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
-make[1]: Entering directory `/build/buildd-r-bioc-limma_3.8.2-1-ia64-RDWaPk/r-bioc-limma-3.8.2'
+make[1]: Entering directory `/build/buildd-r-bioc-limma_3.8.3-1-ia64-ZcQ3ZY/r-bioc-limma-3.8.3'
make[1]: Nothing to be done for `reverse-config'.
-make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.8.2-1-ia64-RDWaPk/r-bioc-limma-3.8.2'
+make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.8.3-1-ia64-ZcQ3ZY/r-bioc-limma-3.8.3'
if [ "reverse-patches" = "reverse-patches" ]; then rm -f debian/stamp-patched; fi
patches:
if [ "reverse-patches" != "reverse-patches" ]; then touch debian/stamp-patched; fi
@@ -524,41 +638,25 @@ if test -d src; then \
fi
rm -f config.log config.status
debian/rules build
-Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
-Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
-Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
-Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
test -x debian/rules
mkdir -p "."
/usr/bin/make -f debian/rules reverse-config
-Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
-Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
-Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
-Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+make[1]: Entering directory `/build/buildd-r-bioc-limma_3.8.3-1-ia64-ZcQ3ZY/r-bioc-limma-3.8.3'
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
-make[1]: Entering directory `/build/buildd-r-bioc-limma_3.8.2-1-ia64-RDWaPk/r-bioc-limma-3.8.2'
make[1]: Nothing to be done for `reverse-config'.
-make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.8.2-1-ia64-RDWaPk/r-bioc-limma-3.8.2'
+make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.8.3-1-ia64-ZcQ3ZY/r-bioc-limma-3.8.3'
if [ "debian/stamp-patched" = "reverse-patches" ]; then rm -f debian/stamp-patched; fi
patches:
if [ "debian/stamp-patched" != "reverse-patches" ]; then touch debian/stamp-patched; fi
if [ "debian/stamp-patched" != "reverse-patches" ] ; then \
/usr/bin/make -f debian/rules update-config ; \
fi
-Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
-Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
-Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
-Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
+make[1]: Entering directory `/build/buildd-r-bioc-limma_3.8.3-1-ia64-ZcQ3ZY/r-bioc-limma-3.8.3'
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
-make[1]: Entering directory `/build/buildd-r-bioc-limma_3.8.2-1-ia64-RDWaPk/r-bioc-limma-3.8.2'
make[1]: Nothing to be done for `update-config'.
-make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.8.2-1-ia64-RDWaPk/r-bioc-limma-3.8.2'
+make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.8.3-1-ia64-ZcQ3ZY/r-bioc-limma-3.8.3'
fakeroot debian/rules binary-arch
-Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
-Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
-Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
-Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
test -x debian/rules
dh_testroot
@@ -567,24 +665,24 @@ dh_installdirs -A
mkdir -p "."
dh_installdirs usr/lib/R/site-library
if test -f /usr/bin/xvfb-run; then \
- xvfb-run \
- R CMD INSTALL -l /build/buildd-r-bioc-limma_3.8.2-1-ia64-RDWaPk/r-bioc-limma-3.8.2/debian/r-bioc-limma/usr/lib/R/site-library --clean \
+ xvfb-run -a \
+ R CMD INSTALL -l /build/buildd-r-bioc-limma_3.8.3-1-ia64-ZcQ3ZY/r-bioc-limma-3.8.3/debian/r-bioc-limma/usr/lib/R/site-library --clean \
. ; \
else \
- R CMD INSTALL -l /build/buildd-r-bioc-limma_3.8.2-1-ia64-RDWaPk/r-bioc-limma-3.8.2/debian/r-bioc-limma/usr/lib/R/site-library \
+ R CMD INSTALL -l /build/buildd-r-bioc-limma_3.8.3-1-ia64-ZcQ3ZY/r-bioc-limma-3.8.3/debian/r-bioc-limma/usr/lib/R/site-library \
--clean . ;\
fi
* installing *source* package 'limma' ...
** libs
-make[1]: Entering directory `/build/buildd-r-bioc-limma_3.8.2-1-ia64-RDWaPk/r-bioc-limma-3.8.2/src'
+make[1]: Entering directory `/build/buildd-r-bioc-limma_3.8.3-1-ia64-ZcQ3ZY/r-bioc-limma-3.8.3/src'
gcc -I/usr/share/R/include -fpic -std=gnu99 -O3 -pipe -g -c normexp.c -o normexp.o
normexp.c: In function 'fit_saddle_nelder_mead':
-normexp.c:153: warning: floating constant exceeds range of 'double'
+normexp.c:153:3: warning: floating constant exceeds range of 'double' [-Woverflow]
gcc -shared -o limma.so normexp.o -L/usr/lib/R/lib -lR
-make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.8.2-1-ia64-RDWaPk/r-bioc-limma-3.8.2/src'
-make[1]: Entering directory `/build/buildd-r-bioc-limma_3.8.2-1-ia64-RDWaPk/r-bioc-limma-3.8.2/src'
-make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.8.2-1-ia64-RDWaPk/r-bioc-limma-3.8.2/src'
-installing to /build/buildd-r-bioc-limma_3.8.2-1-ia64-RDWaPk/r-bioc-limma-3.8.2/debian/r-bioc-limma/usr/lib/R/site-library/limma/libs
+make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.8.3-1-ia64-ZcQ3ZY/r-bioc-limma-3.8.3/src'
+make[1]: Entering directory `/build/buildd-r-bioc-limma_3.8.3-1-ia64-ZcQ3ZY/r-bioc-limma-3.8.3/src'
+make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.8.3-1-ia64-ZcQ3ZY/r-bioc-limma-3.8.3/src'
+installing to /build/buildd-r-bioc-limma_3.8.3-1-ia64-ZcQ3ZY/r-bioc-limma-3.8.3/debian/r-bioc-limma/usr/lib/R/site-library/limma/libs
** R
** inst
** preparing package for lazy loading
@@ -594,17 +692,17 @@ installing to /build/buildd-r-bioc-limma_3.8.2-1-ia64-RDWaPk/r-bioc-limma-3.8.2/
** testing if installed package can be loaded
* DONE (limma)
-rm -vf /build/buildd-r-bioc-limma_3.8.2-1-ia64-RDWaPk/r-bioc-limma-3.8.2/debian/r-bioc-limma/usr/lib/R/site-library/R.css \
- /build/buildd-r-bioc-limma_3.8.2-1-ia64-RDWaPk/r-bioc-limma-3.8.2/debian/r-bioc-limma/usr/lib/R/site-library/limma/COPYING \
- /build/buildd-r-bioc-limma_3.8.2-1-ia64-RDWaPk/r-bioc-limma-3.8.2/debian/r-bioc-limma/usr/lib/R/site-library/limma/LICENSE.txt
+rm -vf /build/buildd-r-bioc-limma_3.8.3-1-ia64-ZcQ3ZY/r-bioc-limma-3.8.3/debian/r-bioc-limma/usr/lib/R/site-library/R.css \
+ /build/buildd-r-bioc-limma_3.8.3-1-ia64-ZcQ3ZY/r-bioc-limma-3.8.3/debian/r-bioc-limma/usr/lib/R/site-library/limma/COPYING \
+ /build/buildd-r-bioc-limma_3.8.3-1-ia64-ZcQ3ZY/r-bioc-limma-3.8.3/debian/r-bioc-limma/usr/lib/R/site-library/limma/LICENSE.txt
if test -f debian/overrides; then \
- install -d /build/buildd-r-bioc-limma_3.8.2-1-ia64-RDWaPk/r-bioc-limma-3.8.2/debian/r-bioc-limma/usr/share/lintian/overrides ; \
+ install -d /build/buildd-r-bioc-limma_3.8.3-1-ia64-ZcQ3ZY/r-bioc-limma-3.8.3/debian/r-bioc-limma/usr/share/lintian/overrides ; \
install -m 0644 debian/overrides \
- /build/buildd-r-bioc-limma_3.8.2-1-ia64-RDWaPk/r-bioc-limma-3.8.2/debian/r-bioc-limma/usr/share/lintian/overrides/r-bioc-limma; \
+ /build/buildd-r-bioc-limma_3.8.3-1-ia64-ZcQ3ZY/r-bioc-limma-3.8.3/debian/r-bioc-limma/usr/share/lintian/overrides/r-bioc-limma; \
fi
Adding cdbs dependencies to debian/r-bioc-limma.substvars
dh_installdirs -pr-bioc-limma
-echo "R:Depends=r-base-core (>= 2.13.0~)" >> debian/r-bioc-limma.substvars
+echo "R:Depends=r-base-core (>= 2.13.1~)" >> debian/r-bioc-limma.substvars
dh_installdocs -pr-bioc-limma
dh_installexamples -pr-bioc-limma
dh_installman -pr-bioc-limma
@@ -636,58 +734,58 @@ dh_shlibdeps -pr-bioc-limma
dh_gencontrol -pr-bioc-limma
dh_md5sums -pr-bioc-limma
dh_builddeb -pr-bioc-limma
-dpkg-deb: building package `r-bioc-limma' in `../r-bioc-limma_3.8.2-1_ia64.deb'.
- dpkg-genchanges -B -mia64 Build Daemon (caballero) <buildd_ia64-caballero at buildd.debian.org> >../r-bioc-limma_3.8.2-1_ia64.changes
+dpkg-deb: building package `r-bioc-limma' in `../r-bioc-limma_3.8.3-1_ia64.deb'.
+ dpkg-genchanges -B -mia64 Build Daemon (alkman) <buildd_ia64-alkman at buildd.debian.org> >../r-bioc-limma_3.8.3-1_ia64.changes
dpkg-genchanges: arch-specific upload - not including arch-independent packages
dpkg-genchanges: binary-only upload - not including any source code
- dpkg-source --after-build r-bioc-limma-3.8.2
+ dpkg-source --after-build r-bioc-limma-3.8.3
dpkg-buildpackage: binary only upload (no source included)
────────────────────────────────────────────────────────────────────────────────
-Build finished at 20110603-0356
+Build finished at 20110817-0516
-r-bioc-limma_3.8.2-1_ia64.changes:
+r-bioc-limma_3.8.3-1_ia64.changes:
Format: 1.8
-Date: Thu, 02 Jun 2011 13:07:58 +0900
+Date: Sun, 14 Aug 2011 20:30:21 +0900
Source: r-bioc-limma
Binary: r-bioc-limma
Architecture: ia64
-Version: 3.8.2-1
+Version: 3.8.3-1
Distribution: sid
Urgency: low
-Maintainer: ia64 Build Daemon (caballero) <buildd_ia64-caballero at buildd.debian.org>
+Maintainer: ia64 Build Daemon (alkman) <buildd_ia64-alkman at buildd.debian.org>
Changed-By: Charles Plessy <plessy at debian.org>
Description:
r-bioc-limma - linear models for microarray data
-Closes: 628548
Changes:
- r-bioc-limma (3.8.2-1) unstable; urgency=low
+ r-bioc-limma (3.8.3-1) unstable; urgency=low
.
- * Initial release (closes: #628548).
+ * New upstream release.
+ * [e891bb6b] Corrected VCS-Git url.
Checksums-Sha1:
- 1f5afbe4e44553cb03c61f2b8b4a5a62a8e6af37 1403682 r-bioc-limma_3.8.2-1_ia64.deb
+ 599a59cb0f73ca578c113b493553cd4aa7a5c741 1404814 r-bioc-limma_3.8.3-1_ia64.deb
Checksums-Sha256:
- e4dfca8a0be189d9a5647edc2255cdfaafd97571859f378cd36e9d382faa8a1a 1403682 r-bioc-limma_3.8.2-1_ia64.deb
+ edb32f83855cdfba9495c775e6d04f416e82ea80ba3009291bd2c5c198deabc8 1404814 r-bioc-limma_3.8.3-1_ia64.deb
Files:
- c907f758a1b76fe3bda5ecd0e3d87afd 1403682 gnu-r optional r-bioc-limma_3.8.2-1_ia64.deb
+ 18f0990abfe20ad9e3ef7b1a27a04e9c 1404814 gnu-r optional r-bioc-limma_3.8.3-1_ia64.deb
┌──────────────────────────────────────────────────────────────────────────────┐
│ Package contents │
└──────────────────────────────────────────────────────────────────────────────┘
-r-bioc-limma_3.8.2-1_ia64.deb
+r-bioc-limma_3.8.3-1_ia64.deb
─────────────────────────────
new debian package, version 2.0.
- size 1403682 bytes: control archive= 1507 bytes.
+ size 1404814 bytes: control archive= 1513 bytes.
768 bytes, 16 lines control
2226 bytes, 29 lines md5sums
Package: r-bioc-limma
- Version: 3.8.2-1
+ Version: 3.8.3-1
Architecture: ia64
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
- Installed-Size: 1692
- Depends: libc6.1 (>= 2.2), r-base-core (>= 2.13.0~)
+ Installed-Size: 1952
+ Depends: libc6.1 (>= 2.2), r-base-core (>= 2.13.1~)
Section: gnu-r
Priority: optional
Homepage: http://bioinf.wehi.edu.au/limma/
@@ -699,50 +797,50 @@ r-bioc-limma_3.8.2-1_ia64.deb
apply to all array platforms and treat Affymetrix, single channel and two
channel experiments in a unified way.
-drwxr-xr-x root/root 0 2011-06-03 03:56 ./
-drwxr-xr-x root/root 0 2011-06-03 03:56 ./usr/
-drwxr-xr-x root/root 0 2011-06-03 03:56 ./usr/lib/
-drwxr-xr-x root/root 0 2011-06-03 03:56 ./usr/lib/R/
-drwxr-xr-x root/root 0 2011-06-03 03:56 ./usr/lib/R/site-library/
-drwxr-xr-x root/root 0 2011-06-03 03:56 ./usr/lib/R/site-library/limma/
--rw-r--r-- root/root 1872 2011-06-03 03:56 ./usr/lib/R/site-library/limma/NAMESPACE
--rw-r--r-- root/root 1008 2011-06-03 03:56 ./usr/lib/R/site-library/limma/DESCRIPTION
-drwxr-xr-x root/root 0 2011-06-03 03:56 ./usr/lib/R/site-library/limma/Meta/
--rw-r--r-- root/root 1052 2011-06-03 03:56 ./usr/lib/R/site-library/limma/Meta/package.rds
--rw-r--r-- root/root 5946 2011-06-03 03:56 ./usr/lib/R/site-library/limma/Meta/Rd.rds
--rw-r--r-- root/root 5522 2011-06-03 03:56 ./usr/lib/R/site-library/limma/Meta/hsearch.rds
--rw-r--r-- root/root 2853 2011-06-03 03:56 ./usr/lib/R/site-library/limma/Meta/links.rds
--rw-r--r-- root/root 217 2011-06-03 03:56 ./usr/lib/R/site-library/limma/Meta/vignette.rds
--rw-r--r-- root/root 503 2011-06-03 03:56 ./usr/lib/R/site-library/limma/Meta/nsInfo.rds
-drwxr-xr-x root/root 0 2011-06-03 03:56 ./usr/lib/R/site-library/limma/libs/
--rw-r--r-- root/root 25328 2011-06-03 03:56 ./usr/lib/R/site-library/limma/libs/limma.so
-drwxr-xr-x root/root 0 2011-06-03 03:56 ./usr/lib/R/site-library/limma/R/
--rw-r--r-- root/root 384 2011-06-03 03:56 ./usr/lib/R/site-library/limma/R/limma
--rw-r--r-- root/root 172729 2011-06-03 03:56 ./usr/lib/R/site-library/limma/R/limma.rdb
--rw-r--r-- root/root 3737 2011-06-03 03:56 ./usr/lib/R/site-library/limma/R/limma.rdx
-drwxr-xr-x root/root 0 2011-06-03 03:56 ./usr/lib/R/site-library/limma/doc/
--rwxr-xr-x root/root 84633 2011-06-03 03:56 ./usr/lib/R/site-library/limma/doc/changelog.txt
--rwxr-xr-x root/root 673 2011-06-03 03:56 ./usr/lib/R/site-library/limma/doc/index.html
--rwxr-xr-x root/root 1711 2011-06-03 03:56 ./usr/lib/R/site-library/limma/doc/limma.Rnw
--rw-r--r-- root/root 45616 2011-06-03 03:56 ./usr/lib/R/site-library/limma/doc/limma.pdf
--rw-r--r-- root/root 687780 2011-06-03 03:56 ./usr/lib/R/site-library/limma/doc/usersguide.pdf
--rwxr-xr-x root/root 1230 2011-06-03 03:56 ./usr/lib/R/site-library/limma/CITATION
-drwxr-xr-x root/root 0 2011-06-03 03:56 ./usr/lib/R/site-library/limma/help/
--rw-r--r-- root/root 1335 2011-06-03 03:56 ./usr/lib/R/site-library/limma/help/paths.rds
--rw-r--r-- root/root 449901 2011-06-03 03:56 ./usr/lib/R/site-library/limma/help/limma.rdb
--rw-r--r-- root/root 3249 2011-06-03 03:56 ./usr/lib/R/site-library/limma/help/limma.rdx
--rw-r--r-- root/root 6150 2011-06-03 03:56 ./usr/lib/R/site-library/limma/help/AnIndex
--rw-r--r-- root/root 2361 2011-06-03 03:56 ./usr/lib/R/site-library/limma/help/aliases.rds
-drwxr-xr-x root/root 0 2011-06-03 03:56 ./usr/lib/R/site-library/limma/html/
--rw-r--r-- root/root 34039 2011-06-03 03:56 ./usr/lib/R/site-library/limma/html/00Index.html
--rw-r--r-- root/root 1179 2011-06-03 03:56 ./usr/lib/R/site-library/limma/html/R.css
--rw-r--r-- root/root 9360 2011-06-03 03:56 ./usr/lib/R/site-library/limma/INDEX
-drwxr-xr-x root/root 0 2011-06-03 03:56 ./usr/share/
-drwxr-xr-x root/root 0 2011-06-03 03:56 ./usr/share/doc/
-drwxr-xr-x root/root 0 2011-06-03 03:56 ./usr/share/doc/r-bioc-limma/
--rw-r--r-- root/root 2116 2011-06-03 03:56 ./usr/share/doc/r-bioc-limma/copyright
--rw-r--r-- root/root 25983 2011-05-20 04:14 ./usr/share/doc/r-bioc-limma/changelog.gz
--rw-r--r-- root/root 161 2011-06-03 03:56 ./usr/share/doc/r-bioc-limma/changelog.Debian.gz
+drwxr-xr-x root/root 0 2011-08-17 05:16 ./
+drwxr-xr-x root/root 0 2011-08-17 05:16 ./usr/
+drwxr-xr-x root/root 0 2011-08-17 05:16 ./usr/share/
+drwxr-xr-x root/root 0 2011-08-17 05:16 ./usr/share/doc/
+drwxr-xr-x root/root 0 2011-08-17 05:16 ./usr/share/doc/r-bioc-limma/
+-rw-r--r-- root/root 234 2011-08-17 05:15 ./usr/share/doc/r-bioc-limma/changelog.Debian.gz
+-rw-r--r-- root/root 26050 2011-08-08 16:14 ./usr/share/doc/r-bioc-limma/changelog.gz
+-rw-r--r-- root/root 2117 2011-08-17 05:15 ./usr/share/doc/r-bioc-limma/copyright
+drwxr-xr-x root/root 0 2011-08-17 05:15 ./usr/lib/
+drwxr-xr-x root/root 0 2011-08-17 05:15 ./usr/lib/R/
+drwxr-xr-x root/root 0 2011-08-17 05:16 ./usr/lib/R/site-library/
+drwxr-xr-x root/root 0 2011-08-17 05:16 ./usr/lib/R/site-library/limma/
+-rw-r--r-- root/root 9360 2011-08-17 05:16 ./usr/lib/R/site-library/limma/INDEX
+drwxr-xr-x root/root 0 2011-08-17 05:15 ./usr/lib/R/site-library/limma/html/
+-rw-r--r-- root/root 1179 2011-08-17 05:15 ./usr/lib/R/site-library/limma/html/R.css
+-rw-r--r-- root/root 34039 2011-08-17 05:15 ./usr/lib/R/site-library/limma/html/00Index.html
+drwxr-xr-x root/root 0 2011-08-17 05:15 ./usr/lib/R/site-library/limma/help/
+-rw-r--r-- root/root 2363 2011-08-17 05:15 ./usr/lib/R/site-library/limma/help/aliases.rds
+-rw-r--r-- root/root 6150 2011-08-17 05:15 ./usr/lib/R/site-library/limma/help/AnIndex
+-rw-r--r-- root/root 3248 2011-08-17 05:15 ./usr/lib/R/site-library/limma/help/limma.rdx
+-rw-r--r-- root/root 450222 2011-08-17 05:15 ./usr/lib/R/site-library/limma/help/limma.rdb
+-rw-r--r-- root/root 1338 2011-08-17 05:15 ./usr/lib/R/site-library/limma/help/paths.rds
+-rwxr-xr-x root/root 1230 2011-08-17 05:15 ./usr/lib/R/site-library/limma/CITATION
+drwxr-xr-x root/root 0 2011-08-17 05:16 ./usr/lib/R/site-library/limma/doc/
+-rw-r--r-- root/root 687780 2011-08-17 05:15 ./usr/lib/R/site-library/limma/doc/usersguide.pdf
+-rw-r--r-- root/root 45616 2011-08-17 05:15 ./usr/lib/R/site-library/limma/doc/limma.pdf
+-rwxr-xr-x root/root 1711 2011-08-17 05:15 ./usr/lib/R/site-library/limma/doc/limma.Rnw
+-rwxr-xr-x root/root 673 2011-08-17 05:15 ./usr/lib/R/site-library/limma/doc/index.html
+-rwxr-xr-x root/root 84899 2011-08-17 05:15 ./usr/lib/R/site-library/limma/doc/changelog.txt
+drwxr-xr-x root/root 0 2011-08-17 05:15 ./usr/lib/R/site-library/limma/R/
+-rw-r--r-- root/root 3746 2011-08-17 05:15 ./usr/lib/R/site-library/limma/R/limma.rdx
+-rw-r--r-- root/root 173273 2011-08-17 05:15 ./usr/lib/R/site-library/limma/R/limma.rdb
+-rw-r--r-- root/root 384 2011-08-17 05:15 ./usr/lib/R/site-library/limma/R/limma
+drwxr-xr-x root/root 0 2011-08-17 05:16 ./usr/lib/R/site-library/limma/libs/
+-rw-r--r-- root/root 23480 2011-08-17 05:16 ./usr/lib/R/site-library/limma/libs/limma.so
+drwxr-xr-x root/root 0 2011-08-17 05:16 ./usr/lib/R/site-library/limma/Meta/
+-rw-r--r-- root/root 505 2011-08-17 05:16 ./usr/lib/R/site-library/limma/Meta/nsInfo.rds
+-rw-r--r-- root/root 217 2011-08-17 05:16 ./usr/lib/R/site-library/limma/Meta/vignette.rds
+-rw-r--r-- root/root 2854 2011-08-17 05:16 ./usr/lib/R/site-library/limma/Meta/links.rds
+-rw-r--r-- root/root 5524 2011-08-17 05:16 ./usr/lib/R/site-library/limma/Meta/hsearch.rds
+-rw-r--r-- root/root 5947 2011-08-17 05:16 ./usr/lib/R/site-library/limma/Meta/Rd.rds
+-rw-r--r-- root/root 1054 2011-08-17 05:15 ./usr/lib/R/site-library/limma/Meta/package.rds
+-rw-r--r-- root/root 1008 2011-08-17 05:15 ./usr/lib/R/site-library/limma/DESCRIPTION
+-rw-r--r-- root/root 1872 2011-08-17 05:15 ./usr/lib/R/site-library/limma/NAMESPACE
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -756,177 +854,27 @@ Built successfully
│ Post Build │
└──────────────────────────────────────────────────────────────────────────────┘
-Purging /var/lib/schroot/mount/sid-ia64-sbuild-ab60cc96-e6ee-4d17-92c0-533972261553/build/buildd-r-bioc-limma_3.8.2-1-ia64-RDWaPk
-Reading package lists...
-Building dependency tree...
-Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 10 not upgraded.
-Reading package lists...
-Building dependency tree...
-Reading state information...
-The following packages will be REMOVED:
- bsdmainutils* cdbs* debhelper* dpatch* file* fontconfig* fontconfig-config*
- gettext* gettext-base* gfortran* gfortran-4.4* groff-base* html2text*
- intltool-debian* libblas-dev* libblas3gf* libbz2-dev* libcairo2* libcroco3*
- libdatrie1* libexpat1* libfontconfig1* libfreetype6* libgfortran3*
- libglib2.0-0* libice6* libjpeg62* libjpeg62-dev* liblapack-dev*
- liblapack3gf* libmagic1* libncurses5-dev* libpango1.0-0* libpaper-utils*
- libpaper1* libpcre3* libpcre3-dev* libpcrecpp0* libpipeline1* libpixman-1-0*
- libpng12-0* libpng12-dev* libquadmath0* libreadline-dev* libreadline6-dev*
- libsm6* libthai-data* libthai0* libtiff4* libunistring0* libx11-6*
- libx11-data* libxau6* libxcb-render0* libxcb-shm0* libxcb1* libxdmcp6*
- libxext6* libxft2* libxml2* libxrender1* libxss1* libxt6* man-db*
- po-debconf* r-base-core* r-base-dev* tcl8.5* tk8.5* ttf-dejavu-core* ucf*
- unzip* x11-common* xdg-utils* zip* zlib1g-dev*
-0 upgraded, 0 newly installed, 76 to remove and 10 not upgraded.
-After this operation, 182 MB disk space will be freed.
-(Reading database ... 14430 files and directories currently installed.)
-Removing r-base-dev ...
-Removing cdbs ...
-Removing debhelper ...
-Removing man-db ...
-Purging configuration files for man-db ...
-Removing bsdmainutils ...
-Purging configuration files for bsdmainutils ...
-Removing dpatch ...
-Purging configuration files for dpatch ...
-Removing file ...
-Removing r-base-core ...
-Purging configuration files for r-base-core ...
-Removing libpango1.0-0 ...
-Purging configuration files for libpango1.0-0 ...
-Removing fontconfig ...
-Purging configuration files for fontconfig ...
-Removing tk8.5 ...
-Purging configuration files for tk8.5 ...
-Removing libxft2 ...
-Purging configuration files for libxft2 ...
-Removing libcairo2 ...
-Purging configuration files for libcairo2 ...
-Removing libfontconfig1 ...
-Purging configuration files for libfontconfig1 ...
-Removing fontconfig-config ...
-Purging configuration files for fontconfig-config ...
-Removing po-debconf ...
-Removing intltool-debian ...
-Removing gettext ...
-Removing gettext-base ...
-Removing gfortran ...
-Removing gfortran-4.4 ...
-Removing groff-base ...
-Purging configuration files for groff-base ...
-Removing html2text ...
-Purging configuration files for html2text ...
-Removing liblapack-dev ...
-Removing libblas-dev ...
-Removing liblapack3gf ...
-Purging configuration files for liblapack3gf ...
-Removing libblas3gf ...
-Purging configuration files for libblas3gf ...
-Removing libbz2-dev ...
-Removing libcroco3 ...
-Purging configuration files for libcroco3 ...
-Removing libthai0 ...
-Purging configuration files for libthai0 ...
-Removing libdatrie1 ...
-Purging configuration files for libdatrie1 ...
-Removing libexpat1 ...
-Purging configuration files for libexpat1 ...
-Removing libfreetype6 ...
-Purging configuration files for libfreetype6 ...
-Removing libgfortran3 ...
-Purging configuration files for libgfortran3 ...
-Removing libglib2.0-0 ...
-Purging configuration files for libglib2.0-0 ...
-Removing libxt6 ...
-Purging configuration files for libxt6 ...
-Removing libsm6 ...
-Purging configuration files for libsm6 ...
-Removing libice6 ...
-Purging configuration files for libice6 ...
-Removing libtiff4 ...
-Purging configuration files for libtiff4 ...
-Removing libjpeg62-dev ...
-Removing libjpeg62 ...
-Removing libmagic1 ...
-Purging configuration files for libmagic1 ...
-Removing libreadline-dev ...
-Removing libreadline6-dev ...
-Removing libncurses5-dev ...
-Removing libpaper-utils ...
-Removing libpaper1 ...
-Purging configuration files for libpaper1 ...
-Removing libpcre3-dev ...
-Removing libpcrecpp0 ...
-Purging configuration files for libpcrecpp0 ...
-Removing libpcre3 ...
-Purging configuration files for libpcre3 ...
-Removing libpipeline1 ...
-Purging configuration files for libpipeline1 ...
-Removing libpixman-1-0 ...
-Purging configuration files for libpixman-1-0 ...
-Removing libpng12-dev ...
-Removing libpng12-0 ...
-Purging configuration files for libpng12-0 ...
-Removing libquadmath0 ...
-Purging configuration files for libquadmath0 ...
-Removing libthai-data ...
-Removing libunistring0 ...
-Purging configuration files for libunistring0 ...
-Removing libxss1 ...
-Purging configuration files for libxss1 ...
-Removing libxrender1 ...
-Purging configuration files for libxrender1 ...
-Removing libxext6 ...
-Purging configuration files for libxext6 ...
-Removing libx11-6 ...
-Purging configuration files for libx11-6 ...
-Removing libx11-data ...
-Removing libxcb-shm0 ...
-Purging configuration files for libxcb-shm0 ...
-Removing libxcb-render0 ...
-Purging configuration files for libxcb-render0 ...
-Removing libxcb1 ...
-Purging configuration files for libxcb1 ...
-Removing libxau6 ...
-Purging configuration files for libxau6 ...
-Removing libxdmcp6 ...
-Purging configuration files for libxdmcp6 ...
-Removing libxml2 ...
-Purging configuration files for libxml2 ...
-Removing tcl8.5 ...
-Purging configuration files for tcl8.5 ...
-Removing ttf-dejavu-core ...
-Removing ucf ...
-Purging configuration files for ucf ...
-Removing unzip ...
-Purging configuration files for unzip ...
-Removing x11-common ...
-All runlevel operations denied by policy
-invoke-rc.d: policy-rc.d denied execution of stop.
-Purging configuration files for x11-common ...
-dpkg: warning: while removing x11-common, directory '/etc/X11' not empty so not removed.
-Removing xdg-utils ...
-Removing zip ...
-Removing zlib1g-dev ...
+Purging /var/lib/schroot/mount/sid-ia64-sbuild-2fe84207-8217-430f-ad74-3b34d44f0fbe/build/buildd-r-bioc-limma_3.8.3-1-ia64-ZcQ3ZY
+Not cleaning session: cloned chroot in use
┌──────────────────────────────────────────────────────────────────────────────┐
│ Summary │
└──────────────────────────────────────────────────────────────────────────────┘
Architecture: ia64
-Build-Space: 5100
-Build-Time: 39
+Build-Space: 7680
+Build-Time: 44
Distribution: sid
-Install-Time: 56
-Job: r-bioc-limma_3.8.2-1
+Install-Time: 222
+Job: r-bioc-limma_3.8.3-1
Package: r-bioc-limma
-Package-Time: 106
-Source-Version: 3.8.2-1
-Space: 5100
+Package-Time: 318
+Source-Version: 3.8.3-1
+Space: 7680
Status: successful
-Version: 3.8.2-1
+Version: 3.8.3-1
────────────────────────────────────────────────────────────────────────────────
-Finished at 20110603-0356
-Build needed 00:01:46, 5100k disc space
+Finished at 20110817-0516
+Build needed 00:05:18, 7680k disc space
+Signature with key 'C6591CE9' requested:
diff --git a/info b/info
index f67d4ea..9886d2f 100644
--- a/info
+++ b/info
@@ -1,11 +1,11 @@
-i386~1307021266~sid~successful
-powerpc~1307021526~sid~successful
-kfreebsd-amd64~1307021841~sid~successful
-mips~1307021876~sid~successful
-kfreebsd-i386~1307021898~sid~successful
-s390~1307023919~sid~successful
-mipsel~1307026638~sid~successful
-sparc~1307028710~sid~successful
-armel~1307030093~sid~successful
-ia64~1307073450~sid~successful
-hurd-i386~1307100902~sid~successful
+kfreebsd-i386~1313324359~sid~successful
+powerpc~1313324394~sid~successful
+kfreebsd-amd64~1313324508~sid~successful
+armel~1313324572~sid~successful
+mips~1313324626~sid~successful
+i386~1313325489~sid~successful
+mipsel~1313326140~sid~successful
+s390~1313326654~sid~successful
+hurd-i386~1313484175~sid~successful
+sparc~1313499196~sid~successful
+ia64~1313558182~sid~successful
diff --git a/kfreebsd-amd64.log b/kfreebsd-amd64.log
index 2d82d12..b861f51 100644
--- a/kfreebsd-amd64.log
+++ b/kfreebsd-amd64.log
@@ -1,49 +1,61 @@
-From buildd at fano.debian.org Thu Jun 02 13:37:19 2011
-Return-path: <buildd at fano.debian.org>
+From buildd at fasch.debian.org Sun Aug 14 12:21:45 2011
+Return-path: <buildd at fasch.debian.org>
Received: from merikanto.debian.org ([2001:858:2:2:216:35ff:fec4:a49a])
from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
CN=merikanto.debian.org,
EMAIL=hostmaster at merikanto.debian.org (verified)
by grieg.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
- (Exim 4.72) (envelope-from <buildd at fano.debian.org>)
- id 1QS85P-0007vA-Mo
- for logs at buildd.debian.org; Thu, 02 Jun 2011 13:37:19 +0000
-Received: from fano.debian.org ([206.12.19.110])
+ (Exim 4.72) (envelope-from <buildd at fasch.debian.org>)
+ id 1QsZhI-0007HO-TH
+ for logs at buildd.debian.org; Sun, 14 Aug 2011 12:21:45 +0000
+Received: from fasch.debian.org ([194.177.211.201])
from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
- CN=fano.debian.org, EMAIL=hostmaster at fano.debian.org (verified)
+ CN=fasch.debian.org, EMAIL=hostmaster at fasch.debian.org (verified)
by merikanto.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
- (Exim 4.72) (envelope-from <buildd at fano.debian.org>)
- id 1QS85O-0007BU-7J; Thu, 02 Jun 2011 13:37:18 +0000
-Received: from buildd by fano.debian.org with local (Exim 4.72)
- (envelope-from <buildd at fano.debian.org>)
- id 1QS85L-0003wH-Tw; Thu, 02 Jun 2011 13:37:15 +0000
-Message-Id: <E1QS85L-0003wH-Tw at fano.debian.org>
+ (Exim 4.72) (envelope-from <buildd at fasch.debian.org>)
+ id 1QsZhH-0005vU-A3; Sun, 14 Aug 2011 12:21:43 +0000
+Received: from buildd by fasch.debian.org with local (Exim 4.72)
+ (envelope-from <buildd at fasch.debian.org>)
+ id 1QsZhG-000Onf-7e; Sun, 14 Aug 2011 12:21:42 +0000
+Message-Id: <E1QsZhG-000Onf-7e at fasch.debian.org>
MIME-Version: 1.0
Content-Transfer-Encoding: binary
X-Mailer: MIME::Lite 3.027 (F2.77; B3.08; Q3.08)
-Date: Thu, 2 Jun 2011 13:37:15 +0000
-From: buildd on fano <buildd at fano.debian.org>
+Date: Sun, 14 Aug 2011 12:21:42 +0000
+From: buildd on fasch <buildd at fasch.debian.org>
To: logs at buildd.debian.org,aurelien at aurel32.net,christoph at debian.org
-Subject: Log for successful build of r-bioc-limma_3.8.2-1 on kfreebsd-amd64
+Subject: Log for successful build of r-bioc-limma_3.8.3-1 on kfreebsd-amd64
(dist=sid)
-Key-Id: 91116966
+Key-Id: 56BAE008
Delivered-To: logs at buildd.debian.org
-sbuild (Debian sbuild) 0.61.0 (23 Feb 2011) on fano.debian.org
+sbuild (Debian sbuild) 0.61.0 (23 Feb 2011) on fasch.debian.org
╔══════════════════════════════════════════════════════════════════════════════╗
-║ r-bioc-limma 3.8.2-1 (kfreebsd-amd64) 02 Jun 2011 13:33 ║
+║ r-bioc-limma 3.8.3-1 (kfreebsd-amd64) 14 Aug 2011 12:15 ║
╚══════════════════════════════════════════════════════════════════════════════╝
Package: r-bioc-limma
-Version: 3.8.2-1
-Source Version: 3.8.2-1
+Version: 3.8.3-1
+Source Version: 3.8.3-1
Architecture: kfreebsd-amd64
+Hit http://ftp.gr.debian.org sid InRelease
+Hit http://ftp.gr.debian.org sid/main Sources/DiffIndex
Hit http://incoming.debian.org sid InRelease
Ign http://incoming.debian.org InRelease
+Hit http://ftp.gr.debian.org sid/contrib Sources/DiffIndex
+Hit http://ftp.gr.debian.org sid/non-free Sources/DiffIndex
+Hit http://ftp.gr.debian.org sid/main kfreebsd-amd64 Packages/DiffIndex
+Hit http://ftp.gr.debian.org sid/contrib kfreebsd-amd64 Packages/DiffIndex
+Hit http://ftp.gr.debian.org sid/non-free kfreebsd-amd64 Packages/DiffIndex
+Ign http://ftp.gr.debian.org sid/contrib TranslationIndex
+Hit http://ftp.gr.debian.org sid/main TranslationIndex
+Ign http://ftp.gr.debian.org sid/non-free TranslationIndex
Get:1 http://incoming.debian.org Release.gpg [836 B]
+Hit http://ftp.gr.debian.org sid/non-free kfreebsd-amd64 Packages
+Ign http://ftp.gr.debian.org sid/contrib Translation-en
+Ign http://ftp.gr.debian.org sid/non-free Translation-en
Hit http://incoming.debian.org sid/main Sources/DiffIndex
-Hit http://mirror-ubc.debian.org sid InRelease
Hit http://incoming.debian.org sid/contrib Sources/DiffIndex
Hit http://incoming.debian.org sid/non-free Sources/DiffIndex
Hit http://incoming.debian.org sid/main kfreebsd-amd64 Packages/DiffIndex
@@ -52,26 +64,18 @@ Hit http://incoming.debian.org sid/non-free kfreebsd-amd64 Packages/DiffIndex
Ign http://incoming.debian.org sid/contrib TranslationIndex
Hit http://incoming.debian.org sid/main TranslationIndex
Ign http://incoming.debian.org sid/non-free TranslationIndex
-Hit http://mirror-ubc.debian.org sid/main Sources/DiffIndex
Get:2 http://incoming.debian.org Release [1604 B]
+Ign http://incoming.debian.org sid/main 2011-08-14-0213.58.pdiff
+Ign http://incoming.debian.org sid/main kfreebsd-amd64 2011-08-14-0213.58.pdiff
Hit http://incoming.debian.org sid/non-free kfreebsd-amd64 Packages
-Hit http://mirror-ubc.debian.org sid/contrib Sources/DiffIndex
-Hit http://mirror-ubc.debian.org sid/non-free Sources/DiffIndex
-Hit http://mirror-ubc.debian.org sid/main kfreebsd-amd64 Packages/DiffIndex
-Hit http://mirror-ubc.debian.org sid/contrib kfreebsd-amd64 Packages/DiffIndex
-Hit http://mirror-ubc.debian.org sid/non-free kfreebsd-amd64 Packages/DiffIndex
-Ign http://mirror-ubc.debian.org sid/contrib TranslationIndex
-Hit http://mirror-ubc.debian.org sid/main TranslationIndex
-Ign http://mirror-ubc.debian.org sid/non-free TranslationIndex
-Hit http://mirror-ubc.debian.org sid/non-free kfreebsd-amd64 Packages
-Ign http://mirror-ubc.debian.org sid/contrib Translation-en
-Ign http://mirror-ubc.debian.org sid/non-free Translation-en
-Get:3 http://incoming.debian.org Sources [36.2 kB]
-Get:4 http://incoming.debian.org Packages [362 kB]
+Hit http://incoming.debian.org sid/main
+Get:3 http://incoming.debian.org Sources [25.0 kB]
+Get:4 http://incoming.debian.org Packages [110 kB]
+Hit http://incoming.debian.org sid/main kfreebsd-amd64
Ign http://incoming.debian.org sid/contrib Translation-en
Ign http://incoming.debian.org sid/non-free Translation-en
Ign http://incoming.debian.org Translation-en
-Fetched 401 kB in 6s (63.3 kB/s)
+Fetched 137 kB in 3s (36.0 kB/s)
Reading package lists...
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -91,12 +95,12 @@ Reading package lists...
Building dependency tree...
Reading state information...
NOTICE: 'r-bioc-limma' packaging is maintained in the 'Git' version control system at:
-git://anonscm.debian.org/debian-med/r-bioc-limma.git
+git://git.debian.org/git/debian-med/r-bioc-limma.git
Need to get 921 kB of source archives.
-Get:1 http://incoming.debian.org/buildd-unstable/ r-bioc-limma 3.8.2-1 (dsc) [1931 B]
-Get:2 http://incoming.debian.org/buildd-unstable/ r-bioc-limma 3.8.2-1 (tar) [917 kB]
-Get:3 http://incoming.debian.org/buildd-unstable/ r-bioc-limma 3.8.2-1 (diff) [2158 B]
-Fetched 921 kB in 1s (529 kB/s)
+Get:1 http://incoming.debian.org/buildd-unstable/ r-bioc-limma 3.8.3-1 (dsc) [1931 B]
+Get:2 http://incoming.debian.org/buildd-unstable/ r-bioc-limma 3.8.3-1 (tar) [917 kB]
+Get:3 http://incoming.debian.org/buildd-unstable/ r-bioc-limma 3.8.3-1 (diff) [2212 B]
+Fetched 921 kB in 2s (334 kB/s)
Download complete and in download only mode
Check arch
@@ -110,7 +114,7 @@ Check arch
Build-Depends: build-essential, fakeroot
Checking for already installed dependencies...
build-essential: already installed (11.5)
-fakeroot: already installed (1.15.1-1)
+fakeroot: already installed (1.16-1)
Checking for dependency conflicts...
Installing positive dependencies:
Reading package lists...
@@ -130,40 +134,40 @@ Checking correctness of dependencies...
Build-Depends: base-files, base-passwd, bash, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, freebsd-utils, grep, gzip, hostname, ncurses-base, ncurses-bin, perl-base, sed, login, sysvinit-utils, sysvinit, tar, bsdutils, util-linux, libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 8), cdbs, r-base-dev (>= 2.10.0)
Checking for already installed dependencies...
-base-files: already installed (6.4)
-base-passwd: already installed (3.5.22)
+base-files: already installed (6.5)
+base-passwd: already installed (3.5.23)
bash: already installed (4.1-3)
coreutils: already installed (8.5-1)
dash: already installed (0.5.5.1-7.4)
-debianutils: already installed (4.0.1)
+debianutils: already installed (4.0.2)
diffutils: already installed (1:3.0-1)
dpkg: already installed (1.16.0.3)
-e2fsprogs: already installed (1.41.12-4)
+e2fsprogs: already installed (1.42~WIP-2011-07-02-1)
findutils: already installed (4.4.2-1)
-freebsd-utils: already installed (8.1-4+b1)
-grep: already installed (2.8-2)
-gzip: already installed (1.3.12-9)
+freebsd-utils: already installed (8.2+ds2-5)
+grep: already installed (2.9-1)
+gzip: already installed (1.4-1)
hostname: already installed (3.06)
ncurses-base: already installed (5.9-1)
ncurses-bin: already installed (5.9-1)
-perl-base: already installed (5.12.3-7)
+perl-base: already installed (5.12.4-4)
sed: already installed (4.2.1-9)
login: already installed (1:4.1.4.2+svn3283-3)
-sysvinit-utils: already installed (2.88dsf-13.7)
-sysvinit: already installed (2.88dsf-13.7)
+sysvinit-utils: already installed (2.88dsf-13.11)
+sysvinit: already installed (2.88dsf-13.11)
tar: already installed (1.25-3)
-bsdutils: already installed (1:2.17.2-9.1)
-util-linux: already installed (2.17.2-9.1)
+bsdutils: already installed (1:2.19.1-5)
+util-linux: already installed (2.19.1-5)
libc6-dev: already installed (~*=PROVIDED=*=)
-gcc: already installed (4:4.6.0-5 >= 4:4.4.3 is satisfied)
-g++: already installed (4:4.6.0-5 >= 4:4.4.3 is satisfied)
+gcc: already installed (4:4.6.1-2 >= 4:4.4.3 is satisfied)
+g++: already installed (4:4.6.1-2 >= 4:4.4.3 is satisfied)
make: already installed (3.81-8.1)
dpkg-dev: already installed (1.16.0.3 >= 1.13.5 is satisfied)
debhelper: missing
-Using default version 8.1.6
+Using default version 8.9.4
cdbs: missing
r-base-dev: missing
-Using default version 2.13.0-2
+Using default version 2.13.1-1
Checking for dependency conflicts...
Installing positive dependencies: debhelper cdbs r-base-dev
Reading package lists...
@@ -173,14 +177,14 @@ The following extra packages will be installed:
dpatch file fontconfig fontconfig-config gettext gettext-base gfortran
gfortran-4.6 groff-base html2text intltool-debian libblas-dev libblas3gf
libbz2-dev libcairo2 libcroco3 libdatrie1 libfontconfig1 libfreetype6
- libgfortran3 libglib2.0-0 libice6 libjpeg62 libjpeg62-dev liblapack-dev
- liblapack3gf libmagic1 libncurses5-dev libpango1.0-0 libpaper-utils
- libpaper1 libpcre3 libpcre3-dev libpcrecpp0 libpipeline1 libpixman-1-0
- libpng12-dev libreadline-dev libreadline6-dev libsm6 libthai-data libthai0
- libtiff4 libunistring0 libx11-6 libx11-data libxau6 libxcb-render0
- libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxrender1 libxss1
- libxt6 man-db po-debconf r-base-core tcl8.5 tk8.5 ttf-dejavu-core ucf unzip
- x11-common xdg-utils zip zlib1g-dev
+ libgfortran3 libglib2.0-0 libice6 libjpeg62 libjpeg8 libjpeg8-dev
+ liblapack-dev liblapack3gf libmagic1 libncurses5-dev libpango1.0-0
+ libpaper-utils libpaper1 libpcre3 libpcre3-dev libpcrecpp0 libpipeline1
+ libpixman-1-0 libpng12-dev libreadline-dev libreadline6-dev libsm6
+ libthai-data libthai0 libtiff4 libunistring0 libx11-6 libx11-data libxau6
+ libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2
+ libxrender1 libxss1 libxt6 man-db po-debconf r-base-core tcl8.5 tk8.5
+ ttf-dejavu-core ucf unzip x11-common xdg-utils zip zlib1g-dev
Suggested packages:
devscripts dh-make curl defoma gettext-doc gfortran-multilib gfortran-doc
gfortran-4.6-multilib gfortran-4.6-doc libgfortran3-dbg groff ncurses-doc
@@ -195,254 +199,257 @@ The following NEW packages will be installed:
cdbs debhelper dpatch file fontconfig fontconfig-config gettext gettext-base
gfortran gfortran-4.6 groff-base html2text intltool-debian libblas-dev
libblas3gf libbz2-dev libcairo2 libcroco3 libdatrie1 libfontconfig1
- libfreetype6 libgfortran3 libglib2.0-0 libice6 libjpeg62 libjpeg62-dev
- liblapack-dev liblapack3gf libmagic1 libncurses5-dev libpango1.0-0
- libpaper-utils libpaper1 libpcre3 libpcre3-dev libpcrecpp0 libpipeline1
- libpixman-1-0 libpng12-dev libreadline-dev libreadline6-dev libsm6
- libthai-data libthai0 libtiff4 libunistring0 libx11-6 libx11-data libxau6
- libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2
- libxrender1 libxss1 libxt6 man-db po-debconf r-base-core r-base-dev tcl8.5
- tk8.5 ttf-dejavu-core ucf unzip x11-common xdg-utils zip zlib1g-dev
+ libfreetype6 libgfortran3 libglib2.0-0 libice6 libjpeg62 libjpeg8
+ libjpeg8-dev liblapack-dev liblapack3gf libmagic1 libncurses5-dev
+ libpango1.0-0 libpaper-utils libpaper1 libpcre3 libpcre3-dev libpcrecpp0
+ libpipeline1 libpixman-1-0 libpng12-dev libreadline-dev libreadline6-dev
+ libsm6 libthai-data libthai0 libtiff4 libunistring0 libx11-6 libx11-data
+ libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2
+ libxml2 libxrender1 libxss1 libxt6 man-db po-debconf r-base-core r-base-dev
+ tcl8.5 tk8.5 ttf-dejavu-core ucf unzip x11-common xdg-utils zip zlib1g-dev
debconf: delaying package configuration, since apt-utils is not installed
-0 upgraded, 72 newly installed, 0 to remove and 0 not upgraded.
-Need to get 0 B/52.5 MB of archives.
-After this operation, 125 MB of additional disk space will be used.
-Selecting previously deselected package groff-base.
-(Reading database ... 12246 files and directories currently installed.)
-Unpacking groff-base (from .../groff-base_1.21-5_kfreebsd-amd64.deb) ...
+0 upgraded, 73 newly installed, 0 to remove and 0 not upgraded.
+Need to get 0 B/52.6 MB of archives.
+After this operation, 126 MB of additional disk space will be used.
Selecting previously deselected package libpipeline1.
-Unpacking libpipeline1 (from .../libpipeline1_1.2.0-2_kfreebsd-amd64.deb) ...
+(Reading database ... 12202 files and directories currently installed.)
+Unpacking libpipeline1 (from .../libpipeline1_1.2.0-3_kfreebsd-amd64.deb) ...
+Selecting previously deselected package libpcre3.
+Unpacking libpcre3 (from .../libpcre3_8.12-4_kfreebsd-amd64.deb) ...
+Selecting previously deselected package libdatrie1.
+Unpacking libdatrie1 (from .../libdatrie1_0.2.4-3_kfreebsd-amd64.deb) ...
+Selecting previously deselected package libfreetype6.
+Unpacking libfreetype6 (from .../libfreetype6_2.4.6-1_kfreebsd-amd64.deb) ...
+Selecting previously deselected package ucf.
+Unpacking ucf (from .../ucf_3.0025+nmu2_all.deb) ...
+Moving old data out of the way
+Selecting previously deselected package ttf-dejavu-core.
+Unpacking ttf-dejavu-core (from .../ttf-dejavu-core_2.33-1_all.deb) ...
+Selecting previously deselected package fontconfig-config.
+Unpacking fontconfig-config (from .../fontconfig-config_2.8.0-3_all.deb) ...
+Selecting previously deselected package libfontconfig1.
+Unpacking libfontconfig1 (from .../libfontconfig1_2.8.0-3_kfreebsd-amd64.deb) ...
+Selecting previously deselected package libgfortran3.
+Unpacking libgfortran3 (from .../libgfortran3_4.6.1-4_kfreebsd-amd64.deb) ...
+Selecting previously deselected package x11-common.
+Unpacking x11-common (from .../x11-common_1%3a7.6+7_all.deb) ...
+Selecting previously deselected package libice6.
+Unpacking libice6 (from .../libice6_2%3a1.0.7-2_kfreebsd-amd64.deb) ...
+Selecting previously deselected package libpixman-1-0.
+Unpacking libpixman-1-0 (from .../libpixman-1-0_0.22.2-1_kfreebsd-amd64.deb) ...
+Selecting previously deselected package libxau6.
+Unpacking libxau6 (from .../libxau6_1%3a1.0.6-3_kfreebsd-amd64.deb) ...
+Selecting previously deselected package libxdmcp6.
+Unpacking libxdmcp6 (from .../libxdmcp6_1%3a1.1.0-3_kfreebsd-amd64.deb) ...
+Selecting previously deselected package libxcb1.
+Unpacking libxcb1 (from .../libxcb1_1.7-3_kfreebsd-amd64.deb) ...
+Selecting previously deselected package libx11-data.
+Unpacking libx11-data (from .../libx11-data_2%3a1.4.4-1_all.deb) ...
+Selecting previously deselected package libx11-6.
+Unpacking libx11-6 (from .../libx11-6_2%3a1.4.4-1_kfreebsd-amd64.deb) ...
+Selecting previously deselected package libxcb-render0.
+Unpacking libxcb-render0 (from .../libxcb-render0_1.7-3_kfreebsd-amd64.deb) ...
+Selecting previously deselected package libxcb-shm0.
+Unpacking libxcb-shm0 (from .../libxcb-shm0_1.7-3_kfreebsd-amd64.deb) ...
+Selecting previously deselected package libxrender1.
+Unpacking libxrender1 (from .../libxrender1_1%3a0.9.6-2_kfreebsd-amd64.deb) ...
+Selecting previously deselected package libcairo2.
+Unpacking libcairo2 (from .../libcairo2_1.10.2-6.1_kfreebsd-amd64.deb) ...
+Selecting previously deselected package libglib2.0-0.
+Unpacking libglib2.0-0 (from .../libglib2.0-0_2.28.6-1_kfreebsd-amd64.deb) ...
+Selecting previously deselected package libthai-data.
+Unpacking libthai-data (from .../libthai-data_0.1.15-2_all.deb) ...
+Selecting previously deselected package libthai0.
+Unpacking libthai0 (from .../libthai0_0.1.15-2_kfreebsd-amd64.deb) ...
+Selecting previously deselected package libxft2.
+Unpacking libxft2 (from .../libxft2_2.2.0-3_kfreebsd-amd64.deb) ...
+Selecting previously deselected package fontconfig.
+Unpacking fontconfig (from .../fontconfig_2.8.0-3_kfreebsd-amd64.deb) ...
+Selecting previously deselected package libpango1.0-0.
+Unpacking libpango1.0-0 (from .../libpango1.0-0_1.28.4-2_kfreebsd-amd64.deb) ...
+Selecting previously deselected package libpcrecpp0.
+Unpacking libpcrecpp0 (from .../libpcrecpp0_8.12-4_kfreebsd-amd64.deb) ...
+Selecting previously deselected package libsm6.
+Unpacking libsm6 (from .../libsm6_2%3a1.2.0-2_kfreebsd-amd64.deb) ...
+Selecting previously deselected package libxext6.
+Unpacking libxext6 (from .../libxext6_2%3a1.3.0-3_kfreebsd-amd64.deb) ...
+Selecting previously deselected package libxss1.
+Unpacking libxss1 (from .../libxss1_1%3a1.2.1-2_kfreebsd-amd64.deb) ...
+Selecting previously deselected package libxt6.
+Unpacking libxt6 (from .../libxt6_1%3a1.1.1-2_kfreebsd-amd64.deb) ...
+Selecting previously deselected package groff-base.
+Unpacking groff-base (from .../groff-base_1.21-6_kfreebsd-amd64.deb) ...
Selecting previously deselected package man-db.
-Unpacking man-db (from .../man-db_2.6.0.2-1_kfreebsd-amd64.deb) ...
+Unpacking man-db (from .../man-db_2.6.0.2-2_kfreebsd-amd64.deb) ...
Selecting previously deselected package libmagic1.
Unpacking libmagic1 (from .../libmagic1_5.04-5+b1_kfreebsd-amd64.deb) ...
Selecting previously deselected package file.
Unpacking file (from .../file_5.04-5+b1_kfreebsd-amd64.deb) ...
Selecting previously deselected package gettext-base.
-Unpacking gettext-base (from .../gettext-base_0.18.1.1-3_kfreebsd-amd64.deb) ...
-Selecting previously deselected package libpcre3.
-Unpacking libpcre3 (from .../libpcre3_8.12-3_kfreebsd-amd64.deb) ...
+Unpacking gettext-base (from .../gettext-base_0.18.1.1-4_kfreebsd-amd64.deb) ...
Selecting previously deselected package libxml2.
-Unpacking libxml2 (from .../libxml2_2.7.8.dfsg-2+b1_kfreebsd-amd64.deb) ...
-Selecting previously deselected package ucf.
-Unpacking ucf (from .../ucf_3.0025+nmu2_all.deb) ...
-Moving old data out of the way
+Unpacking libxml2 (from .../libxml2_2.7.8.dfsg-4_kfreebsd-amd64.deb) ...
Selecting previously deselected package html2text.
Unpacking html2text (from .../html2text_1.3.2a-15_kfreebsd-amd64.deb) ...
-Selecting previously deselected package libglib2.0-0.
-Unpacking libglib2.0-0 (from .../libglib2.0-0_2.28.6-1_kfreebsd-amd64.deb) ...
Selecting previously deselected package libcroco3.
Unpacking libcroco3 (from .../libcroco3_0.6.2-1_kfreebsd-amd64.deb) ...
Selecting previously deselected package libunistring0.
Unpacking libunistring0 (from .../libunistring0_0.9.3-4_kfreebsd-amd64.deb) ...
Selecting previously deselected package gettext.
-Unpacking gettext (from .../gettext_0.18.1.1-3_kfreebsd-amd64.deb) ...
+Unpacking gettext (from .../gettext_0.18.1.1-4_kfreebsd-amd64.deb) ...
Selecting previously deselected package intltool-debian.
Unpacking intltool-debian (from .../intltool-debian_0.35.0+20060710.1_all.deb) ...
Selecting previously deselected package po-debconf.
Unpacking po-debconf (from .../po-debconf_1.0.16+nmu1_all.deb) ...
Selecting previously deselected package debhelper.
-Unpacking debhelper (from .../debhelper_8.1.6_all.deb) ...
+Unpacking debhelper (from .../debhelper_8.9.4_all.deb) ...
Selecting previously deselected package cdbs.
-Unpacking cdbs (from .../archives/cdbs_0.4.94_all.deb) ...
+Unpacking cdbs (from .../archives/cdbs_0.4.96_all.deb) ...
Selecting previously deselected package dpatch.
Unpacking dpatch (from .../archives/dpatch_2.0.31_all.deb) ...
-Selecting previously deselected package libfreetype6.
-Unpacking libfreetype6 (from .../libfreetype6_2.4.4-1_kfreebsd-amd64.deb) ...
-Selecting previously deselected package ttf-dejavu-core.
-Unpacking ttf-dejavu-core (from .../ttf-dejavu-core_2.33-1_all.deb) ...
-Selecting previously deselected package fontconfig-config.
-Unpacking fontconfig-config (from .../fontconfig-config_2.8.0-2.2_all.deb) ...
-Selecting previously deselected package libfontconfig1.
-Unpacking libfontconfig1 (from .../libfontconfig1_2.8.0-2.2_kfreebsd-amd64.deb) ...
-Selecting previously deselected package fontconfig.
-Unpacking fontconfig (from .../fontconfig_2.8.0-2.2_kfreebsd-amd64.deb) ...
-Selecting previously deselected package libgfortran3.
-Unpacking libgfortran3 (from .../libgfortran3_4.6.0-10_kfreebsd-amd64.deb) ...
Selecting previously deselected package gfortran-4.6.
-Unpacking gfortran-4.6 (from .../gfortran-4.6_4.6.0-10_kfreebsd-amd64.deb) ...
+Unpacking gfortran-4.6 (from .../gfortran-4.6_4.6.1-4_kfreebsd-amd64.deb) ...
Selecting previously deselected package gfortran.
-Unpacking gfortran (from .../gfortran_4%3a4.6.0-5_kfreebsd-amd64.deb) ...
+Unpacking gfortran (from .../gfortran_4%3a4.6.1-2_kfreebsd-amd64.deb) ...
Selecting previously deselected package libblas3gf.
-Unpacking libblas3gf (from .../libblas3gf_1.2-8_kfreebsd-amd64.deb) ...
+Unpacking libblas3gf (from .../libblas3gf_1.2.20110419-2_kfreebsd-amd64.deb) ...
Selecting previously deselected package libblas-dev.
-Unpacking libblas-dev (from .../libblas-dev_1.2-8_kfreebsd-amd64.deb) ...
+Unpacking libblas-dev (from .../libblas-dev_1.2.20110419-2_kfreebsd-amd64.deb) ...
Selecting previously deselected package libbz2-dev.
Unpacking libbz2-dev (from .../libbz2-dev_1.0.5-6_kfreebsd-amd64.deb) ...
-Selecting previously deselected package libpixman-1-0.
-Unpacking libpixman-1-0 (from .../libpixman-1-0_0.21.8-1_kfreebsd-amd64.deb) ...
-Selecting previously deselected package libxau6.
-Unpacking libxau6 (from .../libxau6_1%3a1.0.6-1_kfreebsd-amd64.deb) ...
-Selecting previously deselected package libxdmcp6.
-Unpacking libxdmcp6 (from .../libxdmcp6_1%3a1.1.0-1_kfreebsd-amd64.deb) ...
-Selecting previously deselected package libxcb1.
-Unpacking libxcb1 (from .../libxcb1_1.7-2_kfreebsd-amd64.deb) ...
-Selecting previously deselected package libx11-data.
-Unpacking libx11-data (from .../libx11-data_2%3a1.4.3-1_all.deb) ...
-Selecting previously deselected package libx11-6.
-Unpacking libx11-6 (from .../libx11-6_2%3a1.4.3-1_kfreebsd-amd64.deb) ...
-Selecting previously deselected package libxcb-render0.
-Unpacking libxcb-render0 (from .../libxcb-render0_1.7-2_kfreebsd-amd64.deb) ...
-Selecting previously deselected package libxcb-shm0.
-Unpacking libxcb-shm0 (from .../libxcb-shm0_1.7-2_kfreebsd-amd64.deb) ...
-Selecting previously deselected package libxrender1.
-Unpacking libxrender1 (from .../libxrender1_1%3a0.9.6-1_kfreebsd-amd64.deb) ...
-Selecting previously deselected package libcairo2.
-Unpacking libcairo2 (from .../libcairo2_1.10.2-6_kfreebsd-amd64.deb) ...
-Selecting previously deselected package libdatrie1.
-Unpacking libdatrie1 (from .../libdatrie1_0.2.4-2_kfreebsd-amd64.deb) ...
-Selecting previously deselected package x11-common.
-Unpacking x11-common (from .../x11-common_1%3a7.6+6_all.deb) ...
-Selecting previously deselected package libice6.
-Unpacking libice6 (from .../libice6_2%3a1.0.7-1_kfreebsd-amd64.deb) ...
Selecting previously deselected package libjpeg62.
-Unpacking libjpeg62 (from .../libjpeg62_6b1-1_kfreebsd-amd64.deb) ...
-Selecting previously deselected package libjpeg62-dev.
-Unpacking libjpeg62-dev (from .../libjpeg62-dev_6b1-1_kfreebsd-amd64.deb) ...
+Unpacking libjpeg62 (from .../libjpeg62_6b1-2_kfreebsd-amd64.deb) ...
+Selecting previously deselected package libjpeg8.
+Unpacking libjpeg8 (from .../libjpeg8_8c-2_kfreebsd-amd64.deb) ...
+Selecting previously deselected package libjpeg8-dev.
+Unpacking libjpeg8-dev (from .../libjpeg8-dev_8c-2_kfreebsd-amd64.deb) ...
Selecting previously deselected package liblapack3gf.
-Unpacking liblapack3gf (from .../liblapack3gf_3.3.0-4_kfreebsd-amd64.deb) ...
+Unpacking liblapack3gf (from .../liblapack3gf_3.3.1-1_kfreebsd-amd64.deb) ...
Selecting previously deselected package liblapack-dev.
-Unpacking liblapack-dev (from .../liblapack-dev_3.3.0-4_kfreebsd-amd64.deb) ...
+Unpacking liblapack-dev (from .../liblapack-dev_3.3.1-1_kfreebsd-amd64.deb) ...
Selecting previously deselected package libncurses5-dev.
Unpacking libncurses5-dev (from .../libncurses5-dev_5.9-1_kfreebsd-amd64.deb) ...
-Selecting previously deselected package libthai-data.
-Unpacking libthai-data (from .../libthai-data_0.1.15-1_all.deb) ...
-Selecting previously deselected package libthai0.
-Unpacking libthai0 (from .../libthai0_0.1.15-1_kfreebsd-amd64.deb) ...
-Selecting previously deselected package libxft2.
-Unpacking libxft2 (from .../libxft2_2.2.0-2_kfreebsd-amd64.deb) ...
-Selecting previously deselected package libpango1.0-0.
-Unpacking libpango1.0-0 (from .../libpango1.0-0_1.28.3-6_kfreebsd-amd64.deb) ...
Selecting previously deselected package libpaper1.
Unpacking libpaper1 (from .../libpaper1_1.1.24+nmu1_kfreebsd-amd64.deb) ...
Selecting previously deselected package libpaper-utils.
Unpacking libpaper-utils (from .../libpaper-utils_1.1.24+nmu1_kfreebsd-amd64.deb) ...
-Selecting previously deselected package libpcrecpp0.
-Unpacking libpcrecpp0 (from .../libpcrecpp0_8.12-3_kfreebsd-amd64.deb) ...
Selecting previously deselected package libpcre3-dev.
-Unpacking libpcre3-dev (from .../libpcre3-dev_8.12-3_kfreebsd-amd64.deb) ...
+Unpacking libpcre3-dev (from .../libpcre3-dev_8.12-4_kfreebsd-amd64.deb) ...
Selecting previously deselected package zlib1g-dev.
Unpacking zlib1g-dev (from .../zlib1g-dev_1%3a1.2.3.4.dfsg-3_kfreebsd-amd64.deb) ...
Selecting previously deselected package libpng12-dev.
-Unpacking libpng12-dev (from .../libpng12-dev_1.2.44-2_kfreebsd-amd64.deb) ...
+Unpacking libpng12-dev (from .../libpng12-dev_1.2.46-3_kfreebsd-amd64.deb) ...
Selecting previously deselected package libreadline6-dev.
Unpacking libreadline6-dev (from .../libreadline6-dev_6.2-2_kfreebsd-amd64.deb) ...
Selecting previously deselected package libreadline-dev.
Unpacking libreadline-dev (from .../libreadline-dev_6.2-2_kfreebsd-amd64.deb) ...
-Selecting previously deselected package libsm6.
-Unpacking libsm6 (from .../libsm6_2%3a1.2.0-1_kfreebsd-amd64.deb) ...
Selecting previously deselected package libtiff4.
Unpacking libtiff4 (from .../libtiff4_3.9.5-1_kfreebsd-amd64.deb) ...
-Selecting previously deselected package libxext6.
-Unpacking libxext6 (from .../libxext6_2%3a1.3.0-1_kfreebsd-amd64.deb) ...
-Selecting previously deselected package libxss1.
-Unpacking libxss1 (from .../libxss1_1%3a1.2.1-1_kfreebsd-amd64.deb) ...
-Selecting previously deselected package libxt6.
-Unpacking libxt6 (from .../libxt6_1%3a1.1.1-1_kfreebsd-amd64.deb) ...
Selecting previously deselected package zip.
-Unpacking zip (from .../zip_3.0-3_kfreebsd-amd64.deb) ...
+Unpacking zip (from .../zip_3.0-4_kfreebsd-amd64.deb) ...
Selecting previously deselected package unzip.
-Unpacking unzip (from .../unzip_6.0-4_kfreebsd-amd64.deb) ...
+Unpacking unzip (from .../unzip_6.0-5_kfreebsd-amd64.deb) ...
Selecting previously deselected package xdg-utils.
Unpacking xdg-utils (from .../xdg-utils_1.1.0~rc1-2_all.deb) ...
Selecting previously deselected package tcl8.5.
-Unpacking tcl8.5 (from .../tcl8.5_8.5.9-2_kfreebsd-amd64.deb) ...
+Unpacking tcl8.5 (from .../tcl8.5_8.5.10-1_kfreebsd-amd64.deb) ...
Selecting previously deselected package tk8.5.
-Unpacking tk8.5 (from .../tk8.5_8.5.9-2_kfreebsd-amd64.deb) ...
+Unpacking tk8.5 (from .../tk8.5_8.5.10-1_kfreebsd-amd64.deb) ...
Selecting previously deselected package r-base-core.
-Unpacking r-base-core (from .../r-base-core_2.13.0-2_kfreebsd-amd64.deb) ...
+Unpacking r-base-core (from .../r-base-core_2.13.1-1_kfreebsd-amd64.deb) ...
Selecting previously deselected package r-base-dev.
-Unpacking r-base-dev (from .../r-base-dev_2.13.0-2_all.deb) ...
-Setting up groff-base (1.21-5) ...
-Setting up libpipeline1 (1.2.0-2) ...
-Setting up man-db (2.6.0.2-1) ...
+Unpacking r-base-dev (from .../r-base-dev_2.13.1-1_all.deb) ...
+Setting up libpipeline1 (1.2.0-3) ...
+Setting up libpcre3 (8.12-4) ...
+Setting up libdatrie1 (0.2.4-3) ...
+Setting up libfreetype6 (2.4.6-1) ...
+Setting up ucf (3.0025+nmu2) ...
+Setting up ttf-dejavu-core (2.33-1) ...
+Setting up fontconfig-config (2.8.0-3) ...
+Setting up libfontconfig1 (2.8.0-3) ...
+Setting up libgfortran3 (4.6.1-4) ...
+Setting up x11-common (1:7.6+7) ...
+All runlevel operations denied by policy
+invoke-rc.d: policy-rc.d denied execution of start.
+Setting up libice6 (2:1.0.7-2) ...
+Setting up libpixman-1-0 (0.22.2-1) ...
+Setting up libxau6 (1:1.0.6-3) ...
+Setting up libxdmcp6 (1:1.1.0-3) ...
+Setting up libxcb1 (1.7-3) ...
+Setting up libx11-data (2:1.4.4-1) ...
+Setting up libx11-6 (2:1.4.4-1) ...
+Setting up libxcb-render0 (1.7-3) ...
+Setting up libxcb-shm0 (1.7-3) ...
+Setting up libxrender1 (1:0.9.6-2) ...
+Setting up libcairo2 (1.10.2-6.1) ...
+Setting up libglib2.0-0 (2.28.6-1) ...
+No schema files found: doing nothing.
+Setting up libthai-data (0.1.15-2) ...
+Setting up libthai0 (0.1.15-2) ...
+Setting up libxft2 (2.2.0-3) ...
+Setting up fontconfig (2.8.0-3) ...
+Cleaning up old fontconfig caches... done.
+Regenerating fonts cache... done.
+Setting up libpango1.0-0 (1.28.4-2) ...
+Setting up libpcrecpp0 (8.12-4) ...
+Setting up libsm6 (2:1.2.0-2) ...
+Setting up libxext6 (2:1.3.0-3) ...
+Setting up libxss1 (1:1.2.1-2) ...
+Setting up libxt6 (1:1.1.1-2) ...
+Setting up groff-base (1.21-6) ...
+Setting up man-db (2.6.0.2-2) ...
Building database of manual pages ...
Setting up libmagic1 (5.04-5+b1) ...
Setting up file (5.04-5+b1) ...
-Setting up gettext-base (0.18.1.1-3) ...
-Setting up libpcre3 (8.12-3) ...
-Setting up libxml2 (2.7.8.dfsg-2+b1) ...
-Setting up ucf (3.0025+nmu2) ...
+Setting up gettext-base (0.18.1.1-4) ...
+Setting up libxml2 (2.7.8.dfsg-4) ...
Setting up html2text (1.3.2a-15) ...
-Setting up libglib2.0-0 (2.28.6-1) ...
-No schema files found: doing nothing.
Setting up libcroco3 (0.6.2-1) ...
Setting up libunistring0 (0.9.3-4) ...
-Setting up gettext (0.18.1.1-3) ...
+Setting up gettext (0.18.1.1-4) ...
Setting up intltool-debian (0.35.0+20060710.1) ...
Setting up po-debconf (1.0.16+nmu1) ...
-Setting up debhelper (8.1.6) ...
-Setting up cdbs (0.4.94) ...
+Setting up debhelper (8.9.4) ...
+Setting up cdbs (0.4.96) ...
Setting up dpatch (2.0.31) ...
-Setting up libfreetype6 (2.4.4-1) ...
-Setting up ttf-dejavu-core (2.33-1) ...
-Setting up fontconfig-config (2.8.0-2.2) ...
-Setting up libfontconfig1 (2.8.0-2.2) ...
-Setting up fontconfig (2.8.0-2.2) ...
-Cleaning up old fontconfig caches... done.
-Regenerating fonts cache... done.
-Setting up libgfortran3 (4.6.0-10) ...
-Setting up gfortran-4.6 (4.6.0-10) ...
-Setting up gfortran (4:4.6.0-5) ...
+Setting up gfortran-4.6 (4.6.1-4) ...
+Setting up gfortran (4:4.6.1-2) ...
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode.
-Setting up libblas3gf (1.2-8) ...
+Setting up libblas3gf (1.2.20110419-2) ...
update-alternatives: using /usr/lib/libblas/libblas.so.3gf to provide /usr/lib/libblas.so.3gf (libblas.so.3gf) in auto mode.
-Setting up libblas-dev (1.2-8) ...
+Setting up libblas-dev (1.2.20110419-2) ...
update-alternatives: using /usr/lib/libblas/libblas.so to provide /usr/lib/libblas.so (libblas.so) in auto mode.
Setting up libbz2-dev (1.0.5-6) ...
-Setting up libpixman-1-0 (0.21.8-1) ...
-Setting up libxau6 (1:1.0.6-1) ...
-Setting up libxdmcp6 (1:1.1.0-1) ...
-Setting up libxcb1 (1.7-2) ...
-Setting up libx11-data (2:1.4.3-1) ...
-Setting up libx11-6 (2:1.4.3-1) ...
-Setting up libxcb-render0 (1.7-2) ...
-Setting up libxcb-shm0 (1.7-2) ...
-Setting up libxrender1 (1:0.9.6-1) ...
-Setting up libcairo2 (1.10.2-6) ...
-Setting up libdatrie1 (0.2.4-2) ...
-Setting up x11-common (1:7.6+6) ...
-All runlevel operations denied by policy
-invoke-rc.d: policy-rc.d denied execution of start.
-Setting up libice6 (2:1.0.7-1) ...
-Setting up libjpeg62 (6b1-1) ...
-Setting up libjpeg62-dev (6b1-1) ...
-Setting up liblapack3gf (3.3.0-4) ...
+Setting up libjpeg62 (6b1-2) ...
+Setting up libjpeg8 (8c-2) ...
+Setting up libjpeg8-dev (8c-2) ...
+Setting up liblapack3gf (3.3.1-1) ...
update-alternatives: using /usr/lib/lapack/liblapack.so.3gf to provide /usr/lib/liblapack.so.3gf (liblapack.so.3gf) in auto mode.
-Setting up liblapack-dev (3.3.0-4) ...
+Setting up liblapack-dev (3.3.1-1) ...
update-alternatives: using /usr/lib/lapack/liblapack.so to provide /usr/lib/liblapack.so (liblapack.so) in auto mode.
Setting up libncurses5-dev (5.9-1) ...
-Setting up libthai-data (0.1.15-1) ...
-Setting up libthai0 (0.1.15-1) ...
-Setting up libxft2 (2.2.0-2) ...
-Setting up libpango1.0-0 (1.28.3-6) ...
Setting up libpaper1 (1.1.24+nmu1) ...
Creating config file /etc/papersize with new version
Setting up libpaper-utils (1.1.24+nmu1) ...
-Setting up libpcrecpp0 (8.12-3) ...
-Setting up libpcre3-dev (8.12-3) ...
+Setting up libpcre3-dev (8.12-4) ...
Setting up zlib1g-dev (1:1.2.3.4.dfsg-3) ...
-Setting up libpng12-dev (1.2.44-2) ...
+Setting up libpng12-dev (1.2.46-3) ...
Setting up libreadline6-dev (6.2-2) ...
Setting up libreadline-dev (6.2-2) ...
-Setting up libsm6 (2:1.2.0-1) ...
Setting up libtiff4 (3.9.5-1) ...
-Setting up libxext6 (2:1.3.0-1) ...
-Setting up libxss1 (1:1.2.1-1) ...
-Setting up libxt6 (1:1.1.1-1) ...
-Setting up zip (3.0-3) ...
-Setting up unzip (6.0-4) ...
+Setting up zip (3.0-4) ...
+Setting up unzip (6.0-5) ...
Setting up xdg-utils (1.1.0~rc1-2) ...
-Setting up tcl8.5 (8.5.9-2) ...
+Setting up tcl8.5 (8.5.10-1) ...
update-alternatives: using /usr/bin/tclsh8.5 to provide /usr/bin/tclsh (tclsh) in auto mode.
-Setting up tk8.5 (8.5.9-2) ...
+Setting up tk8.5 (8.5.10-1) ...
update-alternatives: using /usr/bin/wish8.5 to provide /usr/bin/wish (wish) in auto mode.
-Setting up r-base-core (2.13.0-2) ...
+Setting up r-base-core (2.13.1-1) ...
Setting R_PAPERSIZE_USER default to 'a4'
Creating config file /etc/R/Renviron with new version
-Setting up r-base-dev (2.13.0-2) ...
+Setting up r-base-dev (2.13.1-1) ...
Removing negative dependencies:
Reading package lists...
Building dependency tree...
@@ -450,8 +457,8 @@ Reading state information...
0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
Checking correctness of dependencies...
Kernel: GNU/kFreeBSD 8.1-1-amd64 kfreebsd-amd64 (x86_64)
-Toolchain package versions: binutils_2.21.51.20110523-1 dpkg-dev_1.16.0.3 g++-4.6_4.6.0-10 gcc-4.6_4.6.0-10 kfreebsd-kernel-headers_0.54 libc0.1-dev_2.13-4 libstdc++6_4.6.0-10 libstdc++6-4.6-dev_4.6.0-10
-Package versions: apt_0.8.14.1 base-files_6.4 base-passwd_3.5.22 bash_4.1-3 binutils_2.21.51.20110523-1 bsdmainutils_8.2.2 bsdutils_1:2.17.2-9.1 build-essential_11.5 bzip2_1.0.5-6 cdbs_0.4.94 coreutils_8.5-1 cpio_2.11-7 cpp_4:4.6.0-5 cpp-4.6_4.6.0-10 dash_0.5.5.1-7.4 debconf_1.5.39 debfoster_2.7-1.1 debhelper_8.1.6 debian-archive-keyring_2010.08.28 debianutils_4.0.1 diffutils_1:3.0-1 dpatch_2.0.31 dpkg_1.16.0.3 dpkg-dev_1.16.0.3 e2fslibs_1.41.12-4 e2fsprogs_1.41.12-4 fakeroot_1.15.1-1 file_5.04-5+b1 findutils_4.4.2-1 fontconfig_2.8.0-2.2 fontconfig-config_2.8.0-2.2 freebsd-utils_8.1-4+b1 g++_4:4.6.0-5 g++-4.6_4.6.0-10 gcc_4:4.6.0-5 gcc-4.2-base_4.2.4-6 gcc-4.4-base_4.4.6-3 gcc-4.5-base_4.5.3-1 gcc-4.6_4.6.0-10 gcc-4.6-base_4.6.0-10 gettext_0.18.1.1-3 gettext-base_0.18.1.1-3 gfortran_4:4.6.0-5 gfortran-4.6_4.6.0-10 gnupg_1.4.11-3 gpgv_1.4.11-3 grep_2.8-2 groff-base_1.21-5 gzip_1.3.12-9 hostname_3.06 html2text_1.3.2a-15 initscripts_2.88dsf-13.7 insserv_1.14.0-2.1 intltool-debian_0.35.0+20060710.1 kfreebsd-kernel-headers_0.54 libacl1_2.2.49-5 libattr1_1:2.4.44-3 libblas-dev_1.2-8 libblas3gf_1.2-8 libblkid1_2.17.2-9.1 libbsd0_0.2.0-1 libbz2-1.0_1.0.5-6 libbz2-dev_1.0.5-6 libc-bin_2.13-4 libc-dev-bin_2.13-4 libc0.1_2.13-4 libc0.1-dev_2.13-4 libcairo2_1.10.2-6 libcam0_8.1-5 libcloog-ppl0_0.15.9-3 libcomerr2_1.41.12-4 libcroco3_0.6.2-1 libdatrie1_0.2.4-2 libdb5.1_5.1.25-10 libdpkg-perl_1.16.0.3 libedit2_2.11-20080614-2 libexpat1_2.0.1-7 libfontconfig1_2.8.0-2.2 libfreetype6_2.4.4-1 libgc1c2_1:7.1-8 libgcc1_1:4.6.0-10 libgcrypt11_1.4.6-5 libgdbm3_1.8.3-9 libgeom0_8.1-5 libgfortran3_4.6.0-10 libglib2.0-0_2.28.6-1 libgmp10_2:5.0.1+dfsg-7 libgmpxx4ldbl_2:5.0.1+dfsg-7 libgnutls26_2.10.5-1+b1 libgomp1_4.6.0-10 libgpg-error0_1.10-0.3 libice6_2:1.0.7-1 libjpeg62_6b1-1 libjpeg62-dev_6b1-1 libkiconv4_8.1-5 libkvm0_8.1-5 liblapack-dev_3.3.0-4 liblapack3gf_3.3.0-4 libldap-2.4-2_2.4.25-1+b1 liblzma2_5.0.0-2 libmagic1_5.04-5+b1 libmpc2_0.9-3 libmpfr4_3.0.1-3 libncurses5_5.9-1 libncurses5-dev_5.9-1 libncursesw5_5.9-1 libpam-modules_1.1.2-3 libpam-runtime_1.1.2-3 libpam0g_1.1.2-3 libpango1.0-0_1.28.3-6 libpaper-utils_1.1.24+nmu1 libpaper1_1.1.24+nmu1 libpcre3_8.12-3 libpcre3-dev_8.12-3 libpcrecpp0_8.12-3 libpipeline1_1.2.0-2 libpixman-1-0_0.21.8-1 libpng12-0_1.2.44-2 libpng12-dev_1.2.44-2 libppl-c4_0.11.2-3 libppl9_0.11.2-3 libpwl5_0.11.2-3 libquadmath0_4.6.0-10 libreadline-dev_6.2-2 libreadline6_6.2-2 libreadline6-dev_6.2-2 libsasl2-2_2.1.24~rc1.dfsg1+cvs2011-05-23-2 libsbuf0_8.1-5 libslang2_2.2.4-2 libsm6_2:1.2.0-1 libss2_1.41.12-4 libstdc++6_4.6.0-10 libstdc++6-4.6-dev_4.6.0-10 libtasn1-3_2.9-3 libthai-data_0.1.15-1 libthai0_0.1.15-1 libtiff4_3.9.5-1 libtimedate-perl_1.2000-1 libunistring0_0.9.3-4 libusb-0.1-4_2:0.1.12-17 libuuid1_2.17.2-9.1 libx11-6_2:1.4.3-1 libx11-data_2:1.4.3-1 libxau6_1:1.0.6-1 libxcb-render0_1.7-2 libxcb-shm0_1.7-2 libxcb1_1.7-2 libxdmcp6_1:1.1.0-1 libxext6_2:1.3.0-1 libxft2_2.2.0-2 libxml2_2.7.8.dfsg-2+b1 libxrender1_1:0.9.6-1 libxss1_1:1.2.1-1 libxt6_1:1.1.1-1 login_1:4.1.4.2+svn3283-3 lsb-base_3.2-27 lzma_4.43-14 make_3.81-8.1 man-db_2.6.0.2-1 mawk_1.3.3-15 ncurses-base_5.9-1 ncurses-bin_5.9-1 passwd_1:4.1.4.2+svn3283-3 patch_2.6.1-2 perl_5.12.3-7 perl-base_5.12.3-7 perl-modules_5.12.3-7 po-debconf_1.0.16+nmu1 procps_1:3.2.8-10 psmisc_22.13-1 r-base-core_2.13.0-2 r-base-dev_2.13.0-2 readline-common_6.2-2 sed_4.2.1-9 sensible-utils_0.0.6 sudo_1.7.4p6-1 sysv-rc_2.88dsf-13.7 sysvinit_2.88dsf-13.7 sysvinit-utils_2.88dsf-13.7 tar_1.25-3 tcl8.5_8.5.9-2 tk8.5_8.5.9-2 ttf-dejavu-core_2.33-1 type-handling_0.2.23 tzdata_2011g-1 ucf_3.0025+nmu2 ufsutils_8.2-1 unzip_6.0-4 util-linux_2.17.2-9.1 x11-common_1:7.6+6 xdg-utils_1.1.0~rc1-2 xz-utils_5.0.0-2 zip_3.0-3 zlib1g_1:1.2.3.4.dfsg-3 zlib1g-dev_1:1.2.3.4.dfsg-3
+Toolchain package versions: binutils_2.21.53.20110805-1 dpkg-dev_1.16.0.3 g++-4.6_4.6.1-4 gcc-4.6_4.6.1-4 kfreebsd-kernel-headers_0.56 libc0.1-dev_2.13-16 libstdc++6_4.6.1-4 libstdc++6-4.6-dev_4.6.1-4
+Package versions: apt_0.8.15.5 base-files_6.5 base-passwd_3.5.23 bash_4.1-3 binutils_2.21.53.20110805-1 bsdmainutils_8.2.3 bsdutils_1:2.19.1-5 build-essential_11.5 bzip2_1.0.5-6 cdbs_0.4.96 coreutils_8.5-1 cpp_4:4.6.1-2 cpp-4.6_4.6.1-4 dash_0.5.5.1-7.4 debconf_1.5.41 debfoster_2.7-1.1 debhelper_8.9.4 debian-archive-keyring_2010.08.28 debianutils_4.0.2 diffutils_1:3.0-1 dpatch_2.0.31 dpkg_1.16.0.3 dpkg-dev_1.16.0.3 e2fslibs_1.42~WIP-2011-07-02-1 e2fsprogs_1.42~WIP-2011-07-02-1 fakeroot_1.16-1 file_5.04-5+b1 findutils_4.4.2-1 fontconfig_2.8.0-3 fontconfig-config_2.8.0-3 freebsd-utils_8.2+ds2-5 g++_4:4.6.1-2 g++-4.6_4.6.1-4 gcc_4:4.6.1-2 gcc-4.4-base_4.4.6-8 gcc-4.5-base_4.5.3-5 gcc-4.6_4.6.1-4 gcc-4.6-base_4.6.1-4 gettext_0.18.1.1-4 gettext-base_0.18.1.1-4 gfortran_4:4.6.1-2 gfortran-4.6_4.6.1-4 gnupg_1.4.11-3 gpgv_1.4.11-3 grep_2.9-1 groff-base_1.21-6 gzip_1.4-1 hostname_3.06 html2text_1.3.2a-15 initscripts_2.88dsf-13.11 insserv_1.14.0-2.1 intltool-debian_0.35.0+20060710.1 kfreebsd-kernel-headers_0.56 libacl1_2.2.51-3 libattr1_1:2.4.46-3 libblas-dev_1.2.20110419-2 libblas3gf_1.2.20110419-2 libblkid1_2.19.1-5 libbsd0_0.3.0-1 libbz2-1.0_1.0.5-6 libbz2-dev_1.0.5-6 libc-bin_2.13-16 libc-dev-bin_2.13-16 libc0.1_2.13-16 libc0.1-dev_2.13-16 libcairo2_1.10.2-6.1 libcam0_8.2+ds1-4 libcloog-ppl0_0.15.9-3 libcomerr2_1.42~WIP-2011-07-02-1 libcroco3_0.6.2-1 libdatrie1_0.2.4-3 libdb5.1_5.1.25-11 libdpkg-perl_1.16.0.3 libexpat1_2.0.1-7 libfontconfig1_2.8.0-3 libfreetype6_2.4.6-1 libgc1c2_1:7.1-8 libgcc1_1:4.6.1-4 libgcrypt11_1.4.6-9 libgdbm3_1.8.3-10 libgeom1_8.2+ds1-4 libgfortran3_4.6.1-4 libglib2.0-0_2.28.6-1 libgmp10_2:5.0.1+dfsg-7 libgmpxx4ldbl_2:5.0.1+dfsg-7 libgnutls26_2.12.7-6 libgomp1_4.6.1-4 libgpg-error0_1.10-0.3 libgssglue1_0.3-2 libice6_2:1.0.7-2 libjail1_8.2+ds1-4 libjpeg62_6b1-2 libjpeg8_8c-2 libjpeg8-dev_8c-2 libkiconv4_8.2+ds1-4 libkvm0_8.2+ds1-4 liblapack-dev_3.3.1-1 liblapack3gf_3.3.1-1 libldap-2.4-2_2.4.25-1.1 liblzma2_5.0.0-2 libmagic1_5.04-5+b1 libmpc2_0.9-3 libmpfr4_3.0.1-5 libncurses5_5.9-1 libncurses5-dev_5.9-1 libncursesw5_5.9-1 libpam-modules_1.1.3-2 libpam-modules-bin_1.1.3-2 libpam-runtime_1.1.3-2 libpam0g_1.1.3-2 libpango1.0-0_1.28.4-2 libpaper-utils_1.1.24+nmu1 libpaper1_1.1.24+nmu1 libpcre3_8.12-4 libpcre3-dev_8.12-4 libpcrecpp0_8.12-4 libpipeline1_1.2.0-3 libpixman-1-0_0.22.2-1 libpng12-0_1.2.46-3 libpng12-dev_1.2.46-3 libppl-c4_0.11.2-4 libppl9_0.11.2-4 libpwl5_0.11.2-4 libquadmath0_4.6.1-4 libreadline-dev_6.2-2 libreadline6_6.2-2 libreadline6-dev_6.2-2 libsasl2-2_2.1.24~rc1.dfsg1+cvs2011-05-23-4 libsbuf0_8.2+ds1-4 libslang2_2.2.4-2 libsm6_2:1.2.0-2 libss2_1.42~WIP-2011-07-02-1 libstdc++6_4.6.1-4 libstdc++6-4.6-dev_4.6.1-4 libtasn1-3_2.9-4 libthai-data_0.1.15-2 libthai0_0.1.15-2 libtiff4_3.9.5-1 libtimedate-perl_1.2000-1 libtirpc1_0.2.2-5 libunistring0_0.9.3-4 libusb-0.1-4_2:0.1.12-18 libuuid1_2.19.1-5 libx11-6_2:1.4.4-1 libx11-data_2:1.4.4-1 libxau6_1:1.0.6-3 libxcb-render0_1.7-3 libxcb-shm0_1.7-3 libxcb1_1.7-3 libxdmcp6_1:1.1.0-3 libxext6_2:1.3.0-3 libxft2_2.2.0-3 libxml2_2.7.8.dfsg-4 libxrender1_1:0.9.6-2 libxss1_1:1.2.1-2 libxt6_1:1.1.1-2 login_1:4.1.4.2+svn3283-3 lsb-base_3.2-27 lzma_4.43-14 make_3.81-8.1 man-db_2.6.0.2-2 mawk_1.3.3-15 multiarch-support_2.13-16 ncurses-base_5.9-1 ncurses-bin_5.9-1 passwd_1:4.1.4.2+svn3283-3 patch_2.6.1-2 perl_5.12.4-4 perl-base_5.12.4-4 perl-modules_5.12.4-4 po-debconf_1.0.16+nmu1 procps_1:3.2.8-11 r-base-core_2.13.1-1 r-base-dev_2.13.1-1 readline-common_6.2-2 sed_4.2.1-9 sensible-utils_0.0.6 sysv-rc_2.88dsf-13.11 sysvinit_2.88dsf-13.11 sysvinit-utils_2.88dsf-13.11 tar_1.25-3 tcl8.5_8.5.10-1 tk8.5_8.5.10-1 ttf-dejavu-core_2.33-1 type-handling_0.2.23 tzdata_2011h-3 ucf_3.0025+nmu2 unzip_6.0-5 util-linux_2.19.1-5 x11-common_1:7.6+7 xdg-utils_1.1.0~rc1-2 xz-utils_5.0.0-2 zip_3.0-4 zlib1g_1:1.2.3.4.dfsg-3 zlib1g-dev_1:1.2.3.4.dfsg-3
┌──────────────────────────────────────────────────────────────────────────────┐
│ Build │
@@ -462,12 +469,12 @@ Unpack source
─────────────
gpgv: keyblock resource `/home/buildd/.gnupg/trustedkeys.gpg': file open error
-gpgv: Signature made Thu Jun 2 04:18:41 2011 UTC using RSA key ID 2295D502
+gpgv: Signature made Sun Aug 14 11:36:35 2011 UTC using RSA key ID 2295D502
gpgv: Can't check signature: public key not found
-dpkg-source: warning: failed to verify signature on ./r-bioc-limma_3.8.2-1.dsc
-dpkg-source: info: extracting r-bioc-limma in r-bioc-limma-3.8.2
-dpkg-source: info: unpacking r-bioc-limma_3.8.2.orig.tar.gz
-dpkg-source: info: applying r-bioc-limma_3.8.2-1.diff.gz
+dpkg-source: warning: failed to verify signature on ./r-bioc-limma_3.8.3-1.dsc
+dpkg-source: info: extracting r-bioc-limma in r-bioc-limma-3.8.3
+dpkg-source: info: unpacking r-bioc-limma_3.8.3.orig.tar.gz
+dpkg-source: info: applying r-bioc-limma_3.8.3-1.diff.gz
Check disc space
────────────────
@@ -482,18 +489,18 @@ dpkg-buildpackage: export CXXFLAGS from dpkg-buildflags (origin: vendor): -g -O2
dpkg-buildpackage: export FFLAGS from dpkg-buildflags (origin: vendor): -g -O2
dpkg-buildpackage: export LDFLAGS from dpkg-buildflags (origin: vendor):
dpkg-buildpackage: source package r-bioc-limma
-dpkg-buildpackage: source version 3.8.2-1
- dpkg-source --before-build r-bioc-limma-3.8.2
+dpkg-buildpackage: source version 3.8.3-1
+ dpkg-source --before-build r-bioc-limma-3.8.3
dpkg-buildpackage: host architecture kfreebsd-amd64
fakeroot debian/rules clean
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
test -x debian/rules
dh_testroot
/usr/bin/make -f debian/rules reverse-config
-/usr/share/cdbs/1/rules/simple-patchsys.mk:31: make[1]: Entering directory `/build/buildd-r-bioc-limma_3.8.2-1-kfreebsd-amd64-3hY1lt/r-bioc-limma-3.8.2'
-WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
+/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
+make[1]: Entering directory `/build/buildd-r-bioc-limma_3.8.3-1-kfreebsd-amd64-YEHYSU/r-bioc-limma-3.8.3'
make[1]: Nothing to be done for `reverse-config'.
-make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.8.2-1-kfreebsd-amd64-3hY1lt/r-bioc-limma-3.8.2'
+make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.8.3-1-kfreebsd-amd64-YEHYSU/r-bioc-limma-3.8.3'
if [ "reverse-patches" = "reverse-patches" ]; then rm -f debian/stamp-patched; fi
patches:
if [ "reverse-patches" != "reverse-patches" ]; then touch debian/stamp-patched; fi
@@ -514,20 +521,20 @@ rm -f config.log config.status
test -x debian/rules
mkdir -p "."
/usr/bin/make -f debian/rules reverse-config
-/usr/share/cdbs/1/rules/simple-patchsys.mk:31: make[1]: Entering directory `/build/buildd-r-bioc-limma_3.8.2-1-kfreebsd-amd64-3hY1lt/r-bioc-limma-3.8.2'
-WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
+/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
+make[1]: Entering directory `/build/buildd-r-bioc-limma_3.8.3-1-kfreebsd-amd64-YEHYSU/r-bioc-limma-3.8.3'
make[1]: Nothing to be done for `reverse-config'.
-make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.8.2-1-kfreebsd-amd64-3hY1lt/r-bioc-limma-3.8.2'
+make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.8.3-1-kfreebsd-amd64-YEHYSU/r-bioc-limma-3.8.3'
if [ "debian/stamp-patched" = "reverse-patches" ]; then rm -f debian/stamp-patched; fi
patches:
if [ "debian/stamp-patched" != "reverse-patches" ]; then touch debian/stamp-patched; fi
if [ "debian/stamp-patched" != "reverse-patches" ] ; then \
/usr/bin/make -f debian/rules update-config ; \
fi
-/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) insteadmake[1]: Entering directory `/build/buildd-r-bioc-limma_3.8.2-1-kfreebsd-amd64-3hY1lt/r-bioc-limma-3.8.2'
-
+/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
+make[1]: Entering directory `/build/buildd-r-bioc-limma_3.8.3-1-kfreebsd-amd64-YEHYSU/r-bioc-limma-3.8.3'
make[1]: Nothing to be done for `update-config'.
-make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.8.2-1-kfreebsd-amd64-3hY1lt/r-bioc-limma-3.8.2'
+make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.8.3-1-kfreebsd-amd64-YEHYSU/r-bioc-limma-3.8.3'
fakeroot debian/rules binary-arch
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
test -x debian/rules
@@ -537,24 +544,24 @@ dh_installdirs -A
mkdir -p "."
dh_installdirs usr/lib/R/site-library
if test -f /usr/bin/xvfb-run; then \
- xvfb-run \
- R CMD INSTALL -l /build/buildd-r-bioc-limma_3.8.2-1-kfreebsd-amd64-3hY1lt/r-bioc-limma-3.8.2/debian/r-bioc-limma/usr/lib/R/site-library --clean \
+ xvfb-run -a \
+ R CMD INSTALL -l /build/buildd-r-bioc-limma_3.8.3-1-kfreebsd-amd64-YEHYSU/r-bioc-limma-3.8.3/debian/r-bioc-limma/usr/lib/R/site-library --clean \
. ; \
else \
- R CMD INSTALL -l /build/buildd-r-bioc-limma_3.8.2-1-kfreebsd-amd64-3hY1lt/r-bioc-limma-3.8.2/debian/r-bioc-limma/usr/lib/R/site-library \
+ R CMD INSTALL -l /build/buildd-r-bioc-limma_3.8.3-1-kfreebsd-amd64-YEHYSU/r-bioc-limma-3.8.3/debian/r-bioc-limma/usr/lib/R/site-library \
--clean . ;\
fi
* installing *source* package 'limma' ...
** libs
-make[1]: Entering directory `/build/buildd-r-bioc-limma_3.8.2-1-kfreebsd-amd64-3hY1lt/r-bioc-limma-3.8.2/src'
+make[1]: Entering directory `/build/buildd-r-bioc-limma_3.8.3-1-kfreebsd-amd64-YEHYSU/r-bioc-limma-3.8.3/src'
gcc -I/usr/share/R/include -fpic -std=gnu99 -O3 -pipe -g -c normexp.c -o normexp.o
normexp.c: In function 'fit_saddle_nelder_mead':
normexp.c:153:3: warning: floating constant exceeds range of 'double' [-Woverflow]
gcc -shared -o limma.so normexp.o -L/usr/lib/R/lib -lR
-make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.8.2-1-kfreebsd-amd64-3hY1lt/r-bioc-limma-3.8.2/src'
-make[1]: Entering directory `/build/buildd-r-bioc-limma_3.8.2-1-kfreebsd-amd64-3hY1lt/r-bioc-limma-3.8.2/src'
-make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.8.2-1-kfreebsd-amd64-3hY1lt/r-bioc-limma-3.8.2/src'
-installing to /build/buildd-r-bioc-limma_3.8.2-1-kfreebsd-amd64-3hY1lt/r-bioc-limma-3.8.2/debian/r-bioc-limma/usr/lib/R/site-library/limma/libs
+make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.8.3-1-kfreebsd-amd64-YEHYSU/r-bioc-limma-3.8.3/src'
+make[1]: Entering directory `/build/buildd-r-bioc-limma_3.8.3-1-kfreebsd-amd64-YEHYSU/r-bioc-limma-3.8.3/src'
+make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.8.3-1-kfreebsd-amd64-YEHYSU/r-bioc-limma-3.8.3/src'
+installing to /build/buildd-r-bioc-limma_3.8.3-1-kfreebsd-amd64-YEHYSU/r-bioc-limma-3.8.3/debian/r-bioc-limma/usr/lib/R/site-library/limma/libs
** R
** inst
** preparing package for lazy loading
@@ -564,17 +571,17 @@ installing to /build/buildd-r-bioc-limma_3.8.2-1-kfreebsd-amd64-3hY1lt/r-bioc-li
** testing if installed package can be loaded
* DONE (limma)
-rm -vf /build/buildd-r-bioc-limma_3.8.2-1-kfreebsd-amd64-3hY1lt/r-bioc-limma-3.8.2/debian/r-bioc-limma/usr/lib/R/site-library/R.css \
- /build/buildd-r-bioc-limma_3.8.2-1-kfreebsd-amd64-3hY1lt/r-bioc-limma-3.8.2/debian/r-bioc-limma/usr/lib/R/site-library/limma/COPYING \
- /build/buildd-r-bioc-limma_3.8.2-1-kfreebsd-amd64-3hY1lt/r-bioc-limma-3.8.2/debian/r-bioc-limma/usr/lib/R/site-library/limma/LICENSE.txt
+rm -vf /build/buildd-r-bioc-limma_3.8.3-1-kfreebsd-amd64-YEHYSU/r-bioc-limma-3.8.3/debian/r-bioc-limma/usr/lib/R/site-library/R.css \
+ /build/buildd-r-bioc-limma_3.8.3-1-kfreebsd-amd64-YEHYSU/r-bioc-limma-3.8.3/debian/r-bioc-limma/usr/lib/R/site-library/limma/COPYING \
+ /build/buildd-r-bioc-limma_3.8.3-1-kfreebsd-amd64-YEHYSU/r-bioc-limma-3.8.3/debian/r-bioc-limma/usr/lib/R/site-library/limma/LICENSE.txt
if test -f debian/overrides; then \
- install -d /build/buildd-r-bioc-limma_3.8.2-1-kfreebsd-amd64-3hY1lt/r-bioc-limma-3.8.2/debian/r-bioc-limma/usr/share/lintian/overrides ; \
+ install -d /build/buildd-r-bioc-limma_3.8.3-1-kfreebsd-amd64-YEHYSU/r-bioc-limma-3.8.3/debian/r-bioc-limma/usr/share/lintian/overrides ; \
install -m 0644 debian/overrides \
- /build/buildd-r-bioc-limma_3.8.2-1-kfreebsd-amd64-3hY1lt/r-bioc-limma-3.8.2/debian/r-bioc-limma/usr/share/lintian/overrides/r-bioc-limma; \
+ /build/buildd-r-bioc-limma_3.8.3-1-kfreebsd-amd64-YEHYSU/r-bioc-limma-3.8.3/debian/r-bioc-limma/usr/share/lintian/overrides/r-bioc-limma; \
fi
Adding cdbs dependencies to debian/r-bioc-limma.substvars
dh_installdirs -pr-bioc-limma
-echo "R:Depends=r-base-core (>= 2.13.0~)" >> debian/r-bioc-limma.substvars
+echo "R:Depends=r-base-core (>= 2.13.1~)" >> debian/r-bioc-limma.substvars
dh_installdocs -pr-bioc-limma
dh_installexamples -pr-bioc-limma
dh_installman -pr-bioc-limma
@@ -606,58 +613,58 @@ dh_shlibdeps -pr-bioc-limma
dh_gencontrol -pr-bioc-limma
dh_md5sums -pr-bioc-limma
dh_builddeb -pr-bioc-limma
-dpkg-deb: building package `r-bioc-limma' in `../r-bioc-limma_3.8.2-1_kfreebsd-amd64.deb'.
- dpkg-genchanges -B -mkfreebsd-amd64 Build Daemon (fano) <buildd_kfreebsd-amd64-fano at buildd.debian.org> >../r-bioc-limma_3.8.2-1_kfreebsd-amd64.changes
+dpkg-deb: building package `r-bioc-limma' in `../r-bioc-limma_3.8.3-1_kfreebsd-amd64.deb'.
+ dpkg-genchanges -B -mkfreebsd-amd64 Build Daemon (fasch) <buildd_kfreebsd-amd64-fasch at buildd.debian.org> >../r-bioc-limma_3.8.3-1_kfreebsd-amd64.changes
dpkg-genchanges: arch-specific upload - not including arch-independent packages
dpkg-genchanges: binary-only upload - not including any source code
- dpkg-source --after-build r-bioc-limma-3.8.2
+ dpkg-source --after-build r-bioc-limma-3.8.3
dpkg-buildpackage: binary only upload (no source included)
────────────────────────────────────────────────────────────────────────────────
-Build finished at 20110602-1336
+Build finished at 20110814-1219
-r-bioc-limma_3.8.2-1_kfreebsd-amd64.changes:
+r-bioc-limma_3.8.3-1_kfreebsd-amd64.changes:
Format: 1.8
-Date: Thu, 02 Jun 2011 13:07:58 +0900
+Date: Sun, 14 Aug 2011 20:30:21 +0900
Source: r-bioc-limma
Binary: r-bioc-limma
Architecture: kfreebsd-amd64
-Version: 3.8.2-1
+Version: 3.8.3-1
Distribution: sid
Urgency: low
-Maintainer: kfreebsd-amd64 Build Daemon (fano) <buildd_kfreebsd-amd64-fano at buildd.debian.org>
+Maintainer: kfreebsd-amd64 Build Daemon (fasch) <buildd_kfreebsd-amd64-fasch at buildd.debian.org>
Changed-By: Charles Plessy <plessy at debian.org>
Description:
r-bioc-limma - linear models for microarray data
-Closes: 628548
Changes:
- r-bioc-limma (3.8.2-1) unstable; urgency=low
+ r-bioc-limma (3.8.3-1) unstable; urgency=low
.
- * Initial release (closes: #628548).
+ * New upstream release.
+ * [e891bb6b] Corrected VCS-Git url.
Checksums-Sha1:
- ea44ce8dfb228fbea8856751fdde27ba66edbab6 1398488 r-bioc-limma_3.8.2-1_kfreebsd-amd64.deb
+ bc38900654a4e3248e6d65dd01c7f0c770d4132c 1401056 r-bioc-limma_3.8.3-1_kfreebsd-amd64.deb
Checksums-Sha256:
- 6a32301d8c8d9965cbd7436b4df414efff41ea42bf8c41ea059e0f4654041662 1398488 r-bioc-limma_3.8.2-1_kfreebsd-amd64.deb
+ 2ed4840c27e32c23d0bb20505686217d10613ff9fb6ece180ca01c4ad9eb39a0 1401056 r-bioc-limma_3.8.3-1_kfreebsd-amd64.deb
Files:
- 92911f97d49d2e8ce5c0cc5fb06899e3 1398488 gnu-r optional r-bioc-limma_3.8.2-1_kfreebsd-amd64.deb
+ 43498892e2c7088a0091c41f88a7f163 1401056 gnu-r optional r-bioc-limma_3.8.3-1_kfreebsd-amd64.deb
┌──────────────────────────────────────────────────────────────────────────────┐
│ Package contents │
└──────────────────────────────────────────────────────────────────────────────┘
-r-bioc-limma_3.8.2-1_kfreebsd-amd64.deb
+r-bioc-limma_3.8.3-1_kfreebsd-amd64.deb
───────────────────────────────────────
new debian package, version 2.0.
- size 1398488 bytes: control archive= 1510 bytes.
+ size 1401056 bytes: control archive= 1512 bytes.
778 bytes, 16 lines control
2226 bytes, 29 lines md5sums
Package: r-bioc-limma
- Version: 3.8.2-1
+ Version: 3.8.3-1
Architecture: kfreebsd-amd64
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
Installed-Size: 1630
- Depends: libc0.1 (>= 2.3), r-base-core (>= 2.13.0~)
+ Depends: libc0.1 (>= 2.3), r-base-core (>= 2.13.1~)
Section: gnu-r
Priority: optional
Homepage: http://bioinf.wehi.edu.au/limma/
@@ -669,50 +676,50 @@ r-bioc-limma_3.8.2-1_kfreebsd-amd64.deb
apply to all array platforms and treat Affymetrix, single channel and two
channel experiments in a unified way.
-drwxr-xr-x root/root 0 2011-06-02 13:36 ./
-drwxr-xr-x root/root 0 2011-06-02 13:36 ./usr/
-drwxr-xr-x root/root 0 2011-06-02 13:36 ./usr/lib/
-drwxr-xr-x root/root 0 2011-06-02 13:36 ./usr/lib/R/
-drwxr-xr-x root/root 0 2011-06-02 13:36 ./usr/lib/R/site-library/
-drwxr-xr-x root/root 0 2011-06-02 13:36 ./usr/lib/R/site-library/limma/
--rw-r--r-- root/root 1872 2011-06-02 13:36 ./usr/lib/R/site-library/limma/NAMESPACE
--rw-r--r-- root/root 1008 2011-06-02 13:36 ./usr/lib/R/site-library/limma/DESCRIPTION
-drwxr-xr-x root/root 0 2011-06-02 13:36 ./usr/lib/R/site-library/limma/Meta/
--rw-r--r-- root/root 1055 2011-06-02 13:36 ./usr/lib/R/site-library/limma/Meta/package.rds
--rw-r--r-- root/root 5946 2011-06-02 13:36 ./usr/lib/R/site-library/limma/Meta/Rd.rds
--rw-r--r-- root/root 5522 2011-06-02 13:36 ./usr/lib/R/site-library/limma/Meta/hsearch.rds
--rw-r--r-- root/root 2853 2011-06-02 13:36 ./usr/lib/R/site-library/limma/Meta/links.rds
--rw-r--r-- root/root 217 2011-06-02 13:36 ./usr/lib/R/site-library/limma/Meta/vignette.rds
--rw-r--r-- root/root 503 2011-06-02 13:36 ./usr/lib/R/site-library/limma/Meta/nsInfo.rds
-drwxr-xr-x root/root 0 2011-06-02 13:36 ./usr/lib/R/site-library/limma/libs/
--rw-r--r-- root/root 10856 2011-06-02 13:36 ./usr/lib/R/site-library/limma/libs/limma.so
-drwxr-xr-x root/root 0 2011-06-02 13:36 ./usr/lib/R/site-library/limma/R/
--rw-r--r-- root/root 384 2011-06-02 13:36 ./usr/lib/R/site-library/limma/R/limma
--rw-r--r-- root/root 172735 2011-06-02 13:36 ./usr/lib/R/site-library/limma/R/limma.rdb
--rw-r--r-- root/root 3738 2011-06-02 13:36 ./usr/lib/R/site-library/limma/R/limma.rdx
-drwxr-xr-x root/root 0 2011-06-02 13:36 ./usr/lib/R/site-library/limma/doc/
--rwxr-xr-x root/root 84633 2011-06-02 13:36 ./usr/lib/R/site-library/limma/doc/changelog.txt
--rwxr-xr-x root/root 673 2011-06-02 13:36 ./usr/lib/R/site-library/limma/doc/index.html
--rwxr-xr-x root/root 1711 2011-06-02 13:36 ./usr/lib/R/site-library/limma/doc/limma.Rnw
--rw-r--r-- root/root 45616 2011-06-02 13:36 ./usr/lib/R/site-library/limma/doc/limma.pdf
--rw-r--r-- root/root 687780 2011-06-02 13:36 ./usr/lib/R/site-library/limma/doc/usersguide.pdf
--rwxr-xr-x root/root 1230 2011-06-02 13:36 ./usr/lib/R/site-library/limma/CITATION
-drwxr-xr-x root/root 0 2011-06-02 13:36 ./usr/lib/R/site-library/limma/help/
--rw-r--r-- root/root 1346 2011-06-02 13:36 ./usr/lib/R/site-library/limma/help/paths.rds
--rw-r--r-- root/root 452076 2011-06-02 13:36 ./usr/lib/R/site-library/limma/help/limma.rdb
--rw-r--r-- root/root 3251 2011-06-02 13:36 ./usr/lib/R/site-library/limma/help/limma.rdx
--rw-r--r-- root/root 6150 2011-06-02 13:36 ./usr/lib/R/site-library/limma/help/AnIndex
--rw-r--r-- root/root 2361 2011-06-02 13:36 ./usr/lib/R/site-library/limma/help/aliases.rds
-drwxr-xr-x root/root 0 2011-06-02 13:36 ./usr/lib/R/site-library/limma/html/
--rw-r--r-- root/root 34039 2011-06-02 13:36 ./usr/lib/R/site-library/limma/html/00Index.html
--rw-r--r-- root/root 1179 2011-06-02 13:36 ./usr/lib/R/site-library/limma/html/R.css
--rw-r--r-- root/root 9360 2011-06-02 13:36 ./usr/lib/R/site-library/limma/INDEX
-drwxr-xr-x root/root 0 2011-06-02 13:36 ./usr/share/
-drwxr-xr-x root/root 0 2011-06-02 13:36 ./usr/share/doc/
-drwxr-xr-x root/root 0 2011-06-02 13:36 ./usr/share/doc/r-bioc-limma/
--rw-r--r-- root/root 2116 2011-06-02 13:36 ./usr/share/doc/r-bioc-limma/copyright
--rw-r--r-- root/root 25983 2011-05-20 04:14 ./usr/share/doc/r-bioc-limma/changelog.gz
--rw-r--r-- root/root 161 2011-06-02 13:36 ./usr/share/doc/r-bioc-limma/changelog.Debian.gz
+drwxr-xr-x root/root 0 2011-08-14 12:19 ./
+drwxr-xr-x root/root 0 2011-08-14 12:19 ./usr/
+drwxr-xr-x root/root 0 2011-08-14 12:19 ./usr/lib/
+drwxr-xr-x root/root 0 2011-08-14 12:19 ./usr/lib/R/
+drwxr-xr-x root/root 0 2011-08-14 12:19 ./usr/lib/R/site-library/
+drwxr-xr-x root/root 0 2011-08-14 12:19 ./usr/lib/R/site-library/limma/
+-rw-r--r-- root/root 1872 2011-08-14 12:19 ./usr/lib/R/site-library/limma/NAMESPACE
+-rw-r--r-- root/root 1008 2011-08-14 12:19 ./usr/lib/R/site-library/limma/DESCRIPTION
+drwxr-xr-x root/root 0 2011-08-14 12:19 ./usr/lib/R/site-library/limma/Meta/
+-rw-r--r-- root/root 1055 2011-08-14 12:19 ./usr/lib/R/site-library/limma/Meta/package.rds
+-rw-r--r-- root/root 5947 2011-08-14 12:19 ./usr/lib/R/site-library/limma/Meta/Rd.rds
+-rw-r--r-- root/root 5524 2011-08-14 12:19 ./usr/lib/R/site-library/limma/Meta/hsearch.rds
+-rw-r--r-- root/root 2854 2011-08-14 12:19 ./usr/lib/R/site-library/limma/Meta/links.rds
+-rw-r--r-- root/root 217 2011-08-14 12:19 ./usr/lib/R/site-library/limma/Meta/vignette.rds
+-rw-r--r-- root/root 505 2011-08-14 12:19 ./usr/lib/R/site-library/limma/Meta/nsInfo.rds
+drwxr-xr-x root/root 0 2011-08-14 12:19 ./usr/lib/R/site-library/limma/libs/
+-rw-r--r-- root/root 10904 2011-08-14 12:19 ./usr/lib/R/site-library/limma/libs/limma.so
+drwxr-xr-x root/root 0 2011-08-14 12:19 ./usr/lib/R/site-library/limma/R/
+-rw-r--r-- root/root 384 2011-08-14 12:19 ./usr/lib/R/site-library/limma/R/limma
+-rw-r--r-- root/root 173283 2011-08-14 12:19 ./usr/lib/R/site-library/limma/R/limma.rdb
+-rw-r--r-- root/root 3739 2011-08-14 12:19 ./usr/lib/R/site-library/limma/R/limma.rdx
+drwxr-xr-x root/root 0 2011-08-14 12:19 ./usr/lib/R/site-library/limma/doc/
+-rwxr-xr-x root/root 84899 2011-08-14 12:19 ./usr/lib/R/site-library/limma/doc/changelog.txt
+-rwxr-xr-x root/root 673 2011-08-14 12:19 ./usr/lib/R/site-library/limma/doc/index.html
+-rwxr-xr-x root/root 1711 2011-08-14 12:19 ./usr/lib/R/site-library/limma/doc/limma.Rnw
+-rw-r--r-- root/root 45616 2011-08-14 12:19 ./usr/lib/R/site-library/limma/doc/limma.pdf
+-rw-r--r-- root/root 687780 2011-08-14 12:19 ./usr/lib/R/site-library/limma/doc/usersguide.pdf
+-rwxr-xr-x root/root 1230 2011-08-14 12:19 ./usr/lib/R/site-library/limma/CITATION
+drwxr-xr-x root/root 0 2011-08-14 12:19 ./usr/lib/R/site-library/limma/help/
+-rw-r--r-- root/root 1349 2011-08-14 12:19 ./usr/lib/R/site-library/limma/help/paths.rds
+-rw-r--r-- root/root 452493 2011-08-14 12:19 ./usr/lib/R/site-library/limma/help/limma.rdb
+-rw-r--r-- root/root 3249 2011-08-14 12:19 ./usr/lib/R/site-library/limma/help/limma.rdx
+-rw-r--r-- root/root 6150 2011-08-14 12:19 ./usr/lib/R/site-library/limma/help/AnIndex
+-rw-r--r-- root/root 2363 2011-08-14 12:19 ./usr/lib/R/site-library/limma/help/aliases.rds
+drwxr-xr-x root/root 0 2011-08-14 12:19 ./usr/lib/R/site-library/limma/html/
+-rw-r--r-- root/root 34039 2011-08-14 12:19 ./usr/lib/R/site-library/limma/html/00Index.html
+-rw-r--r-- root/root 1179 2011-08-14 12:19 ./usr/lib/R/site-library/limma/html/R.css
+-rw-r--r-- root/root 9360 2011-08-14 12:19 ./usr/lib/R/site-library/limma/INDEX
+drwxr-xr-x root/root 0 2011-08-14 12:19 ./usr/share/
+drwxr-xr-x root/root 0 2011-08-14 12:19 ./usr/share/doc/
+drwxr-xr-x root/root 0 2011-08-14 12:19 ./usr/share/doc/r-bioc-limma/
+-rw-r--r-- root/root 2117 2011-08-14 12:19 ./usr/share/doc/r-bioc-limma/copyright
+-rw-r--r-- root/root 26050 2011-08-08 16:14 ./usr/share/doc/r-bioc-limma/changelog.gz
+-rw-r--r-- root/root 234 2011-08-14 12:19 ./usr/share/doc/r-bioc-limma/changelog.Debian.gz
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -726,7 +733,7 @@ Built successfully
│ Post Build │
└──────────────────────────────────────────────────────────────────────────────┘
-Purging /var/lib/schroot/mount/sid-ka-sbuild-1307021627-12569/build/buildd-r-bioc-limma_3.8.2-1-kfreebsd-amd64-3hY1lt
+Purging /var/lib/schroot/mount/sid-ka-sbuild-1313324148-91726/build/buildd-r-bioc-limma_3.8.3-1-kfreebsd-amd64-YEHYSU
Reading package lists...
Building dependency tree...
Reading state information...
@@ -739,17 +746,18 @@ The following packages will be REMOVED:
gettext-base* gfortran* gfortran-4.6* groff-base* html2text*
intltool-debian* libblas-dev* libblas3gf* libbz2-dev* libcairo2* libcroco3*
libdatrie1* libfontconfig1* libfreetype6* libgfortran3* libglib2.0-0*
- libice6* libjpeg62* libjpeg62-dev* liblapack-dev* liblapack3gf* libmagic1*
- libncurses5-dev* libpango1.0-0* libpaper-utils* libpaper1* libpcre3*
- libpcre3-dev* libpcrecpp0* libpipeline1* libpixman-1-0* libpng12-dev*
- libreadline-dev* libreadline6-dev* libsm6* libthai-data* libthai0* libtiff4*
- libunistring0* libx11-6* libx11-data* libxau6* libxcb-render0* libxcb-shm0*
- libxcb1* libxdmcp6* libxext6* libxft2* libxml2* libxrender1* libxss1*
- libxt6* man-db* po-debconf* r-base-core* r-base-dev* tcl8.5* tk8.5*
- ttf-dejavu-core* ucf* unzip* x11-common* xdg-utils* zip* zlib1g-dev*
-0 upgraded, 0 newly installed, 72 to remove and 0 not upgraded.
-After this operation, 125 MB disk space will be freed.
-(Reading database ... 16058 files and directories currently installed.)
+ libice6* libjpeg62* libjpeg8* libjpeg8-dev* liblapack-dev* liblapack3gf*
+ libmagic1* libncurses5-dev* libpango1.0-0* libpaper-utils* libpaper1*
+ libpcre3* libpcre3-dev* libpcrecpp0* libpipeline1* libpixman-1-0*
+ libpng12-dev* libreadline-dev* libreadline6-dev* libsm6* libthai-data*
+ libthai0* libtiff4* libunistring0* libx11-6* libx11-data* libxau6*
+ libxcb-render0* libxcb-shm0* libxcb1* libxdmcp6* libxext6* libxft2* libxml2*
+ libxrender1* libxss1* libxt6* man-db* po-debconf* r-base-core* r-base-dev*
+ tcl8.5* tk8.5* ttf-dejavu-core* ucf* unzip* x11-common* xdg-utils* zip*
+ zlib1g-dev*
+0 upgraded, 0 newly installed, 73 to remove and 0 not upgraded.
+After this operation, 126 MB disk space will be freed.
+(Reading database ... 16021 files and directories currently installed.)
Removing r-base-dev ...
Removing cdbs ...
Removing debhelper ...
@@ -811,8 +819,9 @@ Removing libice6 ...
Purging configuration files for libice6 ...
Removing libtiff4 ...
Purging configuration files for libtiff4 ...
-Removing libjpeg62-dev ...
Removing libjpeg62 ...
+Removing libjpeg8-dev ...
+Removing libjpeg8 ...
Removing libmagic1 ...
Purging configuration files for libmagic1 ...
Removing libreadline-dev ...
@@ -877,17 +886,17 @@ Removing zlib1g-dev ...
Architecture: kfreebsd-amd64
Build-Space: 4772
-Build-Time: 24
+Build-Time: 25
Distribution: sid
-Install-Time: 126
-Job: r-bioc-limma_3.8.2-1
+Install-Time: 196
+Job: r-bioc-limma_3.8.3-1
Package: r-bioc-limma
-Package-Time: 167
-Source-Version: 3.8.2-1
+Package-Time: 242
+Source-Version: 3.8.3-1
Space: 4772
Status: successful
-Version: 3.8.2-1
+Version: 3.8.3-1
────────────────────────────────────────────────────────────────────────────────
-Finished at 20110602-1336
-Build needed 00:02:47, 4772k disc space
-Signature with key '91116966' requested:
+Finished at 20110814-1219
+Build needed 00:04:02, 4772k disc space
+Signature with key '56BAE008' requested:
diff --git a/kfreebsd-i386.log b/kfreebsd-i386.log
index f33c6a4..0b4c8ed 100644
--- a/kfreebsd-i386.log
+++ b/kfreebsd-i386.log
@@ -1,59 +1,59 @@
-From buildd at finzi.debian.org Thu Jun 02 13:38:18 2011
-Return-path: <buildd at finzi.debian.org>
+From buildd at field.debian.org Sun Aug 14 12:19:18 2011
+Return-path: <buildd at field.debian.org>
Received: from merikanto.debian.org ([2001:858:2:2:216:35ff:fec4:a49a])
from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
CN=merikanto.debian.org,
EMAIL=hostmaster at merikanto.debian.org (verified)
by grieg.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
- (Exim 4.72) (envelope-from <buildd at finzi.debian.org>)
- id 1QS86L-00083p-VS
- for logs at buildd.debian.org; Thu, 02 Jun 2011 13:38:18 +0000
-Received: from finzi.debian.org ([206.12.19.111])
+ (Exim 4.72) (envelope-from <buildd at field.debian.org>)
+ id 1QsZew-0006iw-Gj
+ for logs at buildd.debian.org; Sun, 14 Aug 2011 12:19:18 +0000
+Received: from field.debian.org ([194.177.211.210])
from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
- CN=finzi.debian.org, EMAIL=hostmaster at finzi.debian.org (verified)
+ CN=field.debian.org, EMAIL=hostmaster at field.debian.org (verified)
by merikanto.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
- (Exim 4.72) (envelope-from <buildd at finzi.debian.org>)
- id 1QS86K-0007Df-HL; Thu, 02 Jun 2011 13:38:16 +0000
-Received: from buildd by finzi.debian.org with local (Exim 4.72)
- (envelope-from <buildd at finzi.debian.org>)
- id 1QS86I-0002Au-68; Thu, 02 Jun 2011 13:38:14 +0000
-Message-Id: <E1QS86I-0002Au-68 at finzi.debian.org>
+ (Exim 4.72) (envelope-from <buildd at field.debian.org>)
+ id 1QsZeu-0005jK-Sr; Sun, 14 Aug 2011 12:19:17 +0000
+Received: from buildd by field.debian.org with local (Exim 4.72)
+ (envelope-from <buildd at field.debian.org>)
+ id 1QsZet-000IVl-OU; Sun, 14 Aug 2011 12:19:15 +0000
+Message-Id: <E1QsZet-000IVl-OU at field.debian.org>
MIME-Version: 1.0
Content-Transfer-Encoding: binary
X-Mailer: MIME::Lite 3.027 (F2.77; B3.08; Q3.08)
-Date: Thu, 2 Jun 2011 13:38:14 +0000
-From: buildd on finzi <buildd at finzi.debian.org>
+Date: Sun, 14 Aug 2011 12:19:15 +0000
+From: buildd on field <buildd at field.debian.org>
To: logs at buildd.debian.org,aurelien at aurel32.net,christoph at debian.org
-Subject: Log for successful build of r-bioc-limma_3.8.2-1 on kfreebsd-i386
+Subject: Log for successful build of r-bioc-limma_3.8.3-1 on kfreebsd-i386
(dist=sid)
-Key-Id: BB0A10AB
+Key-Id: 6B8016EE
Delivered-To: logs at buildd.debian.org
-sbuild (Debian sbuild) 0.61.0 (23 Feb 2011) on finzi.debian.org
+sbuild (Debian sbuild) 0.61.0 (23 Feb 2011) on field.debian.org
╔══════════════════════════════════════════════════════════════════════════════╗
-║ r-bioc-limma 3.8.2-1 (kfreebsd-i386) 02 Jun 2011 13:34 ║
+║ r-bioc-limma 3.8.3-1 (kfreebsd-i386) 14 Aug 2011 12:13 ║
╚══════════════════════════════════════════════════════════════════════════════╝
Package: r-bioc-limma
-Version: 3.8.2-1
-Source Version: 3.8.2-1
+Version: 3.8.3-1
+Source Version: 3.8.3-1
Architecture: kfreebsd-i386
-Hit http://mirror-ubc.debian.org sid InRelease
-Hit http://mirror-ubc.debian.org sid/main Sources/DiffIndex
+Hit http://ftp.gr.debian.org sid InRelease
+Hit http://ftp.gr.debian.org sid/main Sources/DiffIndex
Hit http://incoming.debian.org sid InRelease
Ign http://incoming.debian.org InRelease
-Hit http://mirror-ubc.debian.org sid/contrib Sources/DiffIndex
-Hit http://mirror-ubc.debian.org sid/non-free Sources/DiffIndex
-Hit http://mirror-ubc.debian.org sid/main kfreebsd-i386 Packages/DiffIndex
-Hit http://mirror-ubc.debian.org sid/contrib kfreebsd-i386 Packages/DiffIndex
-Hit http://mirror-ubc.debian.org sid/non-free kfreebsd-i386 Packages/DiffIndex
-Ign http://mirror-ubc.debian.org sid/contrib TranslationIndex
-Hit http://mirror-ubc.debian.org sid/main TranslationIndex
-Ign http://mirror-ubc.debian.org sid/non-free TranslationIndex
-Get:1 http://incoming.debian.org Release.gpg [836 B]
-Ign http://mirror-ubc.debian.org sid/contrib Translation-en
-Ign http://mirror-ubc.debian.org sid/non-free Translation-en
+Hit http://ftp.gr.debian.org sid/contrib Sources/DiffIndex
+Hit http://ftp.gr.debian.org sid/non-free Sources/DiffIndex
+Hit http://ftp.gr.debian.org sid/main kfreebsd-i386 Packages/DiffIndex
+Hit http://ftp.gr.debian.org sid/contrib kfreebsd-i386 Packages/DiffIndex
+Hit http://ftp.gr.debian.org sid/non-free kfreebsd-i386 Packages/DiffIndex
+Ign http://ftp.gr.debian.org sid/contrib TranslationIndex
+Hit http://ftp.gr.debian.org sid/main TranslationIndex
+Ign http://ftp.gr.debian.org sid/non-free TranslationIndex
+Hit http://incoming.debian.org Release.gpg
+Ign http://ftp.gr.debian.org sid/contrib Translation-en
+Ign http://ftp.gr.debian.org sid/non-free Translation-en
Hit http://incoming.debian.org sid/main Sources/DiffIndex
Hit http://incoming.debian.org sid/contrib Sources/DiffIndex
Hit http://incoming.debian.org sid/non-free Sources/DiffIndex
@@ -63,13 +63,16 @@ Hit http://incoming.debian.org sid/non-free kfreebsd-i386 Packages/DiffIndex
Ign http://incoming.debian.org sid/contrib TranslationIndex
Hit http://incoming.debian.org sid/main TranslationIndex
Ign http://incoming.debian.org sid/non-free TranslationIndex
-Get:2 http://incoming.debian.org Release [1604 B]
-Get:3 http://incoming.debian.org Sources [36.2 kB]
-Get:4 http://incoming.debian.org Packages [362 kB]
+Hit http://incoming.debian.org Release
+Ign http://incoming.debian.org sid/main 2011-08-14-0213.58.pdiff
+Ign http://incoming.debian.org sid/main kfreebsd-i386 2011-08-14-0213.58.pdiff
+Hit http://incoming.debian.org sid/main
+Hit http://incoming.debian.org sid/main kfreebsd-i386
+Hit http://incoming.debian.org Sources
+Hit http://incoming.debian.org Packages
Ign http://incoming.debian.org sid/contrib Translation-en
Ign http://incoming.debian.org sid/non-free Translation-en
Ign http://incoming.debian.org Translation-en
-Fetched 401 kB in 5s (78.0 kB/s)
Reading package lists...
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -89,12 +92,12 @@ Reading package lists...
Building dependency tree...
Reading state information...
NOTICE: 'r-bioc-limma' packaging is maintained in the 'Git' version control system at:
-git://anonscm.debian.org/debian-med/r-bioc-limma.git
+git://git.debian.org/git/debian-med/r-bioc-limma.git
Need to get 921 kB of source archives.
-Get:1 http://incoming.debian.org/buildd-unstable/ r-bioc-limma 3.8.2-1 (dsc) [1931 B]
-Get:2 http://incoming.debian.org/buildd-unstable/ r-bioc-limma 3.8.2-1 (tar) [917 kB]
-Get:3 http://incoming.debian.org/buildd-unstable/ r-bioc-limma 3.8.2-1 (diff) [2158 B]
-Fetched 921 kB in 2s (448 kB/s)
+Get:1 http://incoming.debian.org/buildd-unstable/ r-bioc-limma 3.8.3-1 (dsc) [1931 B]
+Get:2 http://incoming.debian.org/buildd-unstable/ r-bioc-limma 3.8.3-1 (tar) [917 kB]
+Get:3 http://incoming.debian.org/buildd-unstable/ r-bioc-limma 3.8.3-1 (diff) [2212 B]
+Fetched 921 kB in 2s (367 kB/s)
Download complete and in download only mode
Check arch
@@ -108,7 +111,7 @@ Check arch
Build-Depends: build-essential, fakeroot
Checking for already installed dependencies...
build-essential: already installed (11.5)
-fakeroot: already installed (1.15.1-1)
+fakeroot: already installed (1.16-1)
Checking for dependency conflicts...
Installing positive dependencies:
Reading package lists...
@@ -128,40 +131,40 @@ Checking correctness of dependencies...
Build-Depends: base-files, base-passwd, bash, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, freebsd-utils, grep, gzip, hostname, ncurses-base, ncurses-bin, perl-base, sed, login, sysvinit-utils, sysvinit, tar, bsdutils, util-linux, libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 8), cdbs, r-base-dev (>= 2.10.0)
Checking for already installed dependencies...
-base-files: already installed (6.4)
-base-passwd: already installed (3.5.22)
+base-files: already installed (6.5)
+base-passwd: already installed (3.5.23)
bash: already installed (4.1-3)
coreutils: already installed (8.5-1)
dash: already installed (0.5.5.1-7.4)
-debianutils: already installed (4.0.1)
+debianutils: already installed (4.0.2)
diffutils: already installed (1:3.0-1)
dpkg: already installed (1.16.0.3)
-e2fsprogs: already installed (1.41.12-4)
+e2fsprogs: already installed (1.42~WIP-2011-07-02-1)
findutils: already installed (4.4.2-1)
-freebsd-utils: already installed (8.1-4)
-grep: already installed (2.8-2)
-gzip: already installed (1.3.12-9)
+freebsd-utils: already installed (8.2+ds2-5)
+grep: already installed (2.9-1)
+gzip: already installed (1.4-1)
hostname: already installed (3.06)
ncurses-base: already installed (5.9-1)
ncurses-bin: already installed (5.9-1)
-perl-base: already installed (5.12.3-7)
+perl-base: already installed (5.12.4-4)
sed: already installed (4.2.1-9)
login: already installed (1:4.1.4.2+svn3283-3)
-sysvinit-utils: already installed (2.88dsf-13.7)
-sysvinit: already installed (2.88dsf-13.7)
+sysvinit-utils: already installed (2.88dsf-13.11)
+sysvinit: already installed (2.88dsf-13.11)
tar: already installed (1.25-3)
-bsdutils: already installed (1:2.17.2-9.1)
-util-linux: already installed (2.17.2-9.1)
+bsdutils: already installed (1:2.19.1-5)
+util-linux: already installed (2.19.1-5)
libc6-dev: already installed (~*=PROVIDED=*=)
-gcc: already installed (4:4.6.0-5 >= 4:4.4.3 is satisfied)
-g++: already installed (4:4.6.0-5 >= 4:4.4.3 is satisfied)
+gcc: already installed (4:4.6.1-2 >= 4:4.4.3 is satisfied)
+g++: already installed (4:4.6.1-2 >= 4:4.4.3 is satisfied)
make: already installed (3.81-8.1)
dpkg-dev: already installed (1.16.0.3 >= 1.13.5 is satisfied)
debhelper: missing
-Using default version 8.1.6
+Using default version 8.9.4
cdbs: missing
r-base-dev: missing
-Using default version 2.13.0-2
+Using default version 2.13.1-1
Checking for dependency conflicts...
Installing positive dependencies: debhelper cdbs r-base-dev
Reading package lists...
@@ -171,14 +174,14 @@ The following extra packages will be installed:
dpatch file fontconfig fontconfig-config gettext gettext-base gfortran
gfortran-4.6 groff-base html2text intltool-debian libblas-dev libblas3gf
libbz2-dev libcairo2 libcroco3 libdatrie1 libfontconfig1 libfreetype6
- libgfortran3 libglib2.0-0 libice6 libjpeg62 libjpeg62-dev liblapack-dev
- liblapack3gf libmagic1 libncurses5-dev libpango1.0-0 libpaper-utils
- libpaper1 libpcre3 libpcre3-dev libpcrecpp0 libpipeline1 libpixman-1-0
- libpng12-dev libreadline-dev libreadline6-dev libsm6 libthai-data libthai0
- libtiff4 libunistring0 libx11-6 libx11-data libxau6 libxcb-render0
- libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxrender1 libxss1
- libxt6 man-db po-debconf r-base-core tcl8.5 tk8.5 ttf-dejavu-core ucf unzip
- x11-common xdg-utils zip zlib1g-dev
+ libgfortran3 libglib2.0-0 libice6 libjpeg62 libjpeg8 libjpeg8-dev
+ liblapack-dev liblapack3gf libmagic1 libncurses5-dev libpango1.0-0
+ libpaper-utils libpaper1 libpcre3 libpcre3-dev libpcrecpp0 libpipeline1
+ libpixman-1-0 libpng12-dev libreadline-dev libreadline6-dev libsm6
+ libthai-data libthai0 libtiff4 libunistring0 libx11-6 libx11-data libxau6
+ libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2
+ libxrender1 libxss1 libxt6 man-db po-debconf r-base-core tcl8.5 tk8.5
+ ttf-dejavu-core ucf unzip x11-common xdg-utils zip zlib1g-dev
Suggested packages:
devscripts dh-make curl defoma gettext-doc gfortran-doc gfortran-4.6-doc
libgfortran3-dbg groff ncurses-doc ttf-baekmuk ttf-arphic-gbsn00lp
@@ -186,261 +189,264 @@ Suggested packages:
libmail-box-perl r-doc-info r-doc-pdf r-mathlib r-base-html tclreadline
gvfs-bin
Recommended packages:
- patchutils autopoint libglib2.0-data shared-mime-info x-ttcidfont-conf
- xml-core libmail-sendmail-perl r-recommended r-doc-html xterm
- x-terminal-emulator libfile-mimeinfo-perl x11-utils x11-xserver-utils
+ autotools-dev patchutils autopoint libglib2.0-data shared-mime-info
+ x-ttcidfont-conf xml-core libmail-sendmail-perl r-recommended r-doc-html
+ xterm x-terminal-emulator libfile-mimeinfo-perl x11-utils x11-xserver-utils
The following NEW packages will be installed:
cdbs debhelper dpatch file fontconfig fontconfig-config gettext gettext-base
gfortran gfortran-4.6 groff-base html2text intltool-debian libblas-dev
libblas3gf libbz2-dev libcairo2 libcroco3 libdatrie1 libfontconfig1
- libfreetype6 libgfortran3 libglib2.0-0 libice6 libjpeg62 libjpeg62-dev
- liblapack-dev liblapack3gf libmagic1 libncurses5-dev libpango1.0-0
- libpaper-utils libpaper1 libpcre3 libpcre3-dev libpcrecpp0 libpipeline1
- libpixman-1-0 libpng12-dev libreadline-dev libreadline6-dev libsm6
- libthai-data libthai0 libtiff4 libunistring0 libx11-6 libx11-data libxau6
- libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2
- libxrender1 libxss1 libxt6 man-db po-debconf r-base-core r-base-dev tcl8.5
- tk8.5 ttf-dejavu-core ucf unzip x11-common xdg-utils zip zlib1g-dev
+ libfreetype6 libgfortran3 libglib2.0-0 libice6 libjpeg62 libjpeg8
+ libjpeg8-dev liblapack-dev liblapack3gf libmagic1 libncurses5-dev
+ libpango1.0-0 libpaper-utils libpaper1 libpcre3 libpcre3-dev libpcrecpp0
+ libpipeline1 libpixman-1-0 libpng12-dev libreadline-dev libreadline6-dev
+ libsm6 libthai-data libthai0 libtiff4 libunistring0 libx11-6 libx11-data
+ libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2
+ libxml2 libxrender1 libxss1 libxt6 man-db po-debconf r-base-core r-base-dev
+ tcl8.5 tk8.5 ttf-dejavu-core ucf unzip x11-common xdg-utils zip zlib1g-dev
debconf: delaying package configuration, since apt-utils is not installed
-0 upgraded, 72 newly installed, 0 to remove and 0 not upgraded.
-Need to get 0 B/47.9 MB of archives.
-After this operation, 112 MB of additional disk space will be used.
-Selecting previously deselected package groff-base.
-(Reading database ... 12239 files and directories currently installed.)
-Unpacking groff-base (from .../groff-base_1.21-5_kfreebsd-i386.deb) ...
+0 upgraded, 73 newly installed, 0 to remove and 0 not upgraded.
+Need to get 0 B/48.9 MB of archives.
+After this operation, 116 MB of additional disk space will be used.
Selecting previously deselected package libpipeline1.
-Unpacking libpipeline1 (from .../libpipeline1_1.2.0-2_kfreebsd-i386.deb) ...
+(Reading database ... 12260 files and directories currently installed.)
+Unpacking libpipeline1 (from .../libpipeline1_1.2.0-3_kfreebsd-i386.deb) ...
+Selecting previously deselected package libpcre3.
+Unpacking libpcre3 (from .../libpcre3_8.12-4_kfreebsd-i386.deb) ...
+Selecting previously deselected package libdatrie1.
+Unpacking libdatrie1 (from .../libdatrie1_0.2.4-3_kfreebsd-i386.deb) ...
+Selecting previously deselected package libfreetype6.
+Unpacking libfreetype6 (from .../libfreetype6_2.4.6-1_kfreebsd-i386.deb) ...
+Selecting previously deselected package ucf.
+Unpacking ucf (from .../ucf_3.0025+nmu2_all.deb) ...
+Moving old data out of the way
+Selecting previously deselected package ttf-dejavu-core.
+Unpacking ttf-dejavu-core (from .../ttf-dejavu-core_2.33-1_all.deb) ...
+Selecting previously deselected package fontconfig-config.
+Unpacking fontconfig-config (from .../fontconfig-config_2.8.0-3_all.deb) ...
+Selecting previously deselected package libfontconfig1.
+Unpacking libfontconfig1 (from .../libfontconfig1_2.8.0-3_kfreebsd-i386.deb) ...
+Selecting previously deselected package libgfortran3.
+Unpacking libgfortran3 (from .../libgfortran3_4.6.1-6_kfreebsd-i386.deb) ...
+Selecting previously deselected package x11-common.
+Unpacking x11-common (from .../x11-common_1%3a7.6+7_all.deb) ...
+Selecting previously deselected package libice6.
+Unpacking libice6 (from .../libice6_2%3a1.0.7-2_kfreebsd-i386.deb) ...
+Selecting previously deselected package libpixman-1-0.
+Unpacking libpixman-1-0 (from .../libpixman-1-0_0.22.2-1_kfreebsd-i386.deb) ...
+Selecting previously deselected package libxau6.
+Unpacking libxau6 (from .../libxau6_1%3a1.0.6-3_kfreebsd-i386.deb) ...
+Selecting previously deselected package libxdmcp6.
+Unpacking libxdmcp6 (from .../libxdmcp6_1%3a1.1.0-3_kfreebsd-i386.deb) ...
+Selecting previously deselected package libxcb1.
+Unpacking libxcb1 (from .../libxcb1_1.7-3_kfreebsd-i386.deb) ...
+Selecting previously deselected package libx11-data.
+Unpacking libx11-data (from .../libx11-data_2%3a1.4.4-1_all.deb) ...
+Selecting previously deselected package libx11-6.
+Unpacking libx11-6 (from .../libx11-6_2%3a1.4.4-1_kfreebsd-i386.deb) ...
+Selecting previously deselected package libxcb-render0.
+Unpacking libxcb-render0 (from .../libxcb-render0_1.7-3_kfreebsd-i386.deb) ...
+Selecting previously deselected package libxcb-shm0.
+Unpacking libxcb-shm0 (from .../libxcb-shm0_1.7-3_kfreebsd-i386.deb) ...
+Selecting previously deselected package libxrender1.
+Unpacking libxrender1 (from .../libxrender1_1%3a0.9.6-2_kfreebsd-i386.deb) ...
+Selecting previously deselected package libcairo2.
+Unpacking libcairo2 (from .../libcairo2_1.10.2-6.1_kfreebsd-i386.deb) ...
+Selecting previously deselected package libglib2.0-0.
+Unpacking libglib2.0-0 (from .../libglib2.0-0_2.28.6-1_kfreebsd-i386.deb) ...
+Selecting previously deselected package libthai-data.
+Unpacking libthai-data (from .../libthai-data_0.1.15-2_all.deb) ...
+Selecting previously deselected package libthai0.
+Unpacking libthai0 (from .../libthai0_0.1.15-2_kfreebsd-i386.deb) ...
+Selecting previously deselected package libxft2.
+Unpacking libxft2 (from .../libxft2_2.2.0-3_kfreebsd-i386.deb) ...
+Selecting previously deselected package fontconfig.
+Unpacking fontconfig (from .../fontconfig_2.8.0-3_kfreebsd-i386.deb) ...
+Selecting previously deselected package libpango1.0-0.
+Unpacking libpango1.0-0 (from .../libpango1.0-0_1.28.4-2_kfreebsd-i386.deb) ...
+Selecting previously deselected package libpcrecpp0.
+Unpacking libpcrecpp0 (from .../libpcrecpp0_8.12-4_kfreebsd-i386.deb) ...
+Selecting previously deselected package libsm6.
+Unpacking libsm6 (from .../libsm6_2%3a1.2.0-2_kfreebsd-i386.deb) ...
+Selecting previously deselected package libxext6.
+Unpacking libxext6 (from .../libxext6_2%3a1.3.0-3_kfreebsd-i386.deb) ...
+Selecting previously deselected package libxss1.
+Unpacking libxss1 (from .../libxss1_1%3a1.2.1-2_kfreebsd-i386.deb) ...
+Selecting previously deselected package libxt6.
+Unpacking libxt6 (from .../libxt6_1%3a1.1.1-2_kfreebsd-i386.deb) ...
+Selecting previously deselected package groff-base.
+Unpacking groff-base (from .../groff-base_1.21-6_kfreebsd-i386.deb) ...
Selecting previously deselected package man-db.
-Unpacking man-db (from .../man-db_2.6.0.2-1_kfreebsd-i386.deb) ...
+Unpacking man-db (from .../man-db_2.6.0.2-2_kfreebsd-i386.deb) ...
Selecting previously deselected package libmagic1.
Unpacking libmagic1 (from .../libmagic1_5.04-5+b1_kfreebsd-i386.deb) ...
Selecting previously deselected package file.
Unpacking file (from .../file_5.04-5+b1_kfreebsd-i386.deb) ...
Selecting previously deselected package gettext-base.
-Unpacking gettext-base (from .../gettext-base_0.18.1.1-3_kfreebsd-i386.deb) ...
-Selecting previously deselected package libpcre3.
-Unpacking libpcre3 (from .../libpcre3_8.12-3_kfreebsd-i386.deb) ...
+Unpacking gettext-base (from .../gettext-base_0.18.1.1-4_kfreebsd-i386.deb) ...
Selecting previously deselected package libxml2.
-Unpacking libxml2 (from .../libxml2_2.7.8.dfsg-2+b1_kfreebsd-i386.deb) ...
-Selecting previously deselected package ucf.
-Unpacking ucf (from .../ucf_3.0025+nmu2_all.deb) ...
-Moving old data out of the way
+Unpacking libxml2 (from .../libxml2_2.7.8.dfsg-4_kfreebsd-i386.deb) ...
Selecting previously deselected package html2text.
Unpacking html2text (from .../html2text_1.3.2a-15_kfreebsd-i386.deb) ...
-Selecting previously deselected package libglib2.0-0.
-Unpacking libglib2.0-0 (from .../libglib2.0-0_2.28.6-1_kfreebsd-i386.deb) ...
Selecting previously deselected package libcroco3.
Unpacking libcroco3 (from .../libcroco3_0.6.2-1_kfreebsd-i386.deb) ...
Selecting previously deselected package libunistring0.
Unpacking libunistring0 (from .../libunistring0_0.9.3-4_kfreebsd-i386.deb) ...
Selecting previously deselected package gettext.
-Unpacking gettext (from .../gettext_0.18.1.1-3_kfreebsd-i386.deb) ...
+Unpacking gettext (from .../gettext_0.18.1.1-4_kfreebsd-i386.deb) ...
Selecting previously deselected package intltool-debian.
Unpacking intltool-debian (from .../intltool-debian_0.35.0+20060710.1_all.deb) ...
Selecting previously deselected package po-debconf.
Unpacking po-debconf (from .../po-debconf_1.0.16+nmu1_all.deb) ...
Selecting previously deselected package debhelper.
-Unpacking debhelper (from .../debhelper_8.1.6_all.deb) ...
+Unpacking debhelper (from .../debhelper_8.9.4_all.deb) ...
Selecting previously deselected package cdbs.
-Unpacking cdbs (from .../archives/cdbs_0.4.94_all.deb) ...
+Unpacking cdbs (from .../archives/cdbs_0.4.96_all.deb) ...
Selecting previously deselected package dpatch.
Unpacking dpatch (from .../archives/dpatch_2.0.31_all.deb) ...
-Selecting previously deselected package libfreetype6.
-Unpacking libfreetype6 (from .../libfreetype6_2.4.4-1_kfreebsd-i386.deb) ...
-Selecting previously deselected package ttf-dejavu-core.
-Unpacking ttf-dejavu-core (from .../ttf-dejavu-core_2.33-1_all.deb) ...
-Selecting previously deselected package fontconfig-config.
-Unpacking fontconfig-config (from .../fontconfig-config_2.8.0-2.2_all.deb) ...
-Selecting previously deselected package libfontconfig1.
-Unpacking libfontconfig1 (from .../libfontconfig1_2.8.0-2.2_kfreebsd-i386.deb) ...
-Selecting previously deselected package fontconfig.
-Unpacking fontconfig (from .../fontconfig_2.8.0-2.2_kfreebsd-i386.deb) ...
-Selecting previously deselected package libgfortran3.
-Unpacking libgfortran3 (from .../libgfortran3_4.6.0-10_kfreebsd-i386.deb) ...
Selecting previously deselected package gfortran-4.6.
-Unpacking gfortran-4.6 (from .../gfortran-4.6_4.6.0-10_kfreebsd-i386.deb) ...
+Unpacking gfortran-4.6 (from .../gfortran-4.6_4.6.1-6_kfreebsd-i386.deb) ...
Selecting previously deselected package gfortran.
-Unpacking gfortran (from .../gfortran_4%3a4.6.0-5_kfreebsd-i386.deb) ...
+Unpacking gfortran (from .../gfortran_4%3a4.6.1-2_kfreebsd-i386.deb) ...
Selecting previously deselected package libblas3gf.
-Unpacking libblas3gf (from .../libblas3gf_1.2-8_kfreebsd-i386.deb) ...
+Unpacking libblas3gf (from .../libblas3gf_1.2.20110419-2_kfreebsd-i386.deb) ...
Selecting previously deselected package libblas-dev.
-Unpacking libblas-dev (from .../libblas-dev_1.2-8_kfreebsd-i386.deb) ...
+Unpacking libblas-dev (from .../libblas-dev_1.2.20110419-2_kfreebsd-i386.deb) ...
Selecting previously deselected package libbz2-dev.
Unpacking libbz2-dev (from .../libbz2-dev_1.0.5-6_kfreebsd-i386.deb) ...
-Selecting previously deselected package libpixman-1-0.
-Unpacking libpixman-1-0 (from .../libpixman-1-0_0.21.8-1_kfreebsd-i386.deb) ...
-Selecting previously deselected package libxau6.
-Unpacking libxau6 (from .../libxau6_1%3a1.0.6-1_kfreebsd-i386.deb) ...
-Selecting previously deselected package libxdmcp6.
-Unpacking libxdmcp6 (from .../libxdmcp6_1%3a1.1.0-1_kfreebsd-i386.deb) ...
-Selecting previously deselected package libxcb1.
-Unpacking libxcb1 (from .../libxcb1_1.7-2_kfreebsd-i386.deb) ...
-Selecting previously deselected package libx11-data.
-Unpacking libx11-data (from .../libx11-data_2%3a1.4.3-1_all.deb) ...
-Selecting previously deselected package libx11-6.
-Unpacking libx11-6 (from .../libx11-6_2%3a1.4.3-1_kfreebsd-i386.deb) ...
-Selecting previously deselected package libxcb-render0.
-Unpacking libxcb-render0 (from .../libxcb-render0_1.7-2_kfreebsd-i386.deb) ...
-Selecting previously deselected package libxcb-shm0.
-Unpacking libxcb-shm0 (from .../libxcb-shm0_1.7-2_kfreebsd-i386.deb) ...
-Selecting previously deselected package libxrender1.
-Unpacking libxrender1 (from .../libxrender1_1%3a0.9.6-1_kfreebsd-i386.deb) ...
-Selecting previously deselected package libcairo2.
-Unpacking libcairo2 (from .../libcairo2_1.10.2-6_kfreebsd-i386.deb) ...
-Selecting previously deselected package libdatrie1.
-Unpacking libdatrie1 (from .../libdatrie1_0.2.4-2_kfreebsd-i386.deb) ...
-Selecting previously deselected package x11-common.
-Unpacking x11-common (from .../x11-common_1%3a7.6+6_all.deb) ...
-Selecting previously deselected package libice6.
-Unpacking libice6 (from .../libice6_2%3a1.0.7-1_kfreebsd-i386.deb) ...
Selecting previously deselected package libjpeg62.
-Unpacking libjpeg62 (from .../libjpeg62_6b1-1_kfreebsd-i386.deb) ...
-Selecting previously deselected package libjpeg62-dev.
-Unpacking libjpeg62-dev (from .../libjpeg62-dev_6b1-1_kfreebsd-i386.deb) ...
+Unpacking libjpeg62 (from .../libjpeg62_6b1-2_kfreebsd-i386.deb) ...
+Selecting previously deselected package libjpeg8.
+Unpacking libjpeg8 (from .../libjpeg8_8c-2_kfreebsd-i386.deb) ...
+Selecting previously deselected package libjpeg8-dev.
+Unpacking libjpeg8-dev (from .../libjpeg8-dev_8c-2_kfreebsd-i386.deb) ...
Selecting previously deselected package liblapack3gf.
-Unpacking liblapack3gf (from .../liblapack3gf_3.3.0-4_kfreebsd-i386.deb) ...
+Unpacking liblapack3gf (from .../liblapack3gf_3.3.1-1_kfreebsd-i386.deb) ...
Selecting previously deselected package liblapack-dev.
-Unpacking liblapack-dev (from .../liblapack-dev_3.3.0-4_kfreebsd-i386.deb) ...
+Unpacking liblapack-dev (from .../liblapack-dev_3.3.1-1_kfreebsd-i386.deb) ...
Selecting previously deselected package libncurses5-dev.
Unpacking libncurses5-dev (from .../libncurses5-dev_5.9-1_kfreebsd-i386.deb) ...
-Selecting previously deselected package libthai-data.
-Unpacking libthai-data (from .../libthai-data_0.1.15-1_all.deb) ...
-Selecting previously deselected package libthai0.
-Unpacking libthai0 (from .../libthai0_0.1.15-1_kfreebsd-i386.deb) ...
-Selecting previously deselected package libxft2.
-Unpacking libxft2 (from .../libxft2_2.2.0-2_kfreebsd-i386.deb) ...
-Selecting previously deselected package libpango1.0-0.
-Unpacking libpango1.0-0 (from .../libpango1.0-0_1.28.3-6_kfreebsd-i386.deb) ...
Selecting previously deselected package libpaper1.
Unpacking libpaper1 (from .../libpaper1_1.1.24+nmu1_kfreebsd-i386.deb) ...
Selecting previously deselected package libpaper-utils.
Unpacking libpaper-utils (from .../libpaper-utils_1.1.24+nmu1_kfreebsd-i386.deb) ...
-Selecting previously deselected package libpcrecpp0.
-Unpacking libpcrecpp0 (from .../libpcrecpp0_8.12-3_kfreebsd-i386.deb) ...
Selecting previously deselected package libpcre3-dev.
-Unpacking libpcre3-dev (from .../libpcre3-dev_8.12-3_kfreebsd-i386.deb) ...
+Unpacking libpcre3-dev (from .../libpcre3-dev_8.12-4_kfreebsd-i386.deb) ...
Selecting previously deselected package zlib1g-dev.
Unpacking zlib1g-dev (from .../zlib1g-dev_1%3a1.2.3.4.dfsg-3_kfreebsd-i386.deb) ...
Selecting previously deselected package libpng12-dev.
-Unpacking libpng12-dev (from .../libpng12-dev_1.2.44-2_kfreebsd-i386.deb) ...
+Unpacking libpng12-dev (from .../libpng12-dev_1.2.46-3_kfreebsd-i386.deb) ...
Selecting previously deselected package libreadline6-dev.
Unpacking libreadline6-dev (from .../libreadline6-dev_6.2-2_kfreebsd-i386.deb) ...
Selecting previously deselected package libreadline-dev.
Unpacking libreadline-dev (from .../libreadline-dev_6.2-2_kfreebsd-i386.deb) ...
-Selecting previously deselected package libsm6.
-Unpacking libsm6 (from .../libsm6_2%3a1.2.0-1_kfreebsd-i386.deb) ...
Selecting previously deselected package libtiff4.
Unpacking libtiff4 (from .../libtiff4_3.9.5-1_kfreebsd-i386.deb) ...
-Selecting previously deselected package libxext6.
-Unpacking libxext6 (from .../libxext6_2%3a1.3.0-1_kfreebsd-i386.deb) ...
-Selecting previously deselected package libxss1.
-Unpacking libxss1 (from .../libxss1_1%3a1.2.1-1_kfreebsd-i386.deb) ...
-Selecting previously deselected package libxt6.
-Unpacking libxt6 (from .../libxt6_1%3a1.1.1-1_kfreebsd-i386.deb) ...
Selecting previously deselected package zip.
-Unpacking zip (from .../zip_3.0-3_kfreebsd-i386.deb) ...
+Unpacking zip (from .../zip_3.0-4_kfreebsd-i386.deb) ...
Selecting previously deselected package unzip.
-Unpacking unzip (from .../unzip_6.0-4_kfreebsd-i386.deb) ...
+Unpacking unzip (from .../unzip_6.0-5_kfreebsd-i386.deb) ...
Selecting previously deselected package xdg-utils.
Unpacking xdg-utils (from .../xdg-utils_1.1.0~rc1-2_all.deb) ...
Selecting previously deselected package tcl8.5.
-Unpacking tcl8.5 (from .../tcl8.5_8.5.9-2_kfreebsd-i386.deb) ...
+Unpacking tcl8.5 (from .../tcl8.5_8.5.10-1_kfreebsd-i386.deb) ...
Selecting previously deselected package tk8.5.
-Unpacking tk8.5 (from .../tk8.5_8.5.9-2_kfreebsd-i386.deb) ...
+Unpacking tk8.5 (from .../tk8.5_8.5.10-1_kfreebsd-i386.deb) ...
Selecting previously deselected package r-base-core.
-Unpacking r-base-core (from .../r-base-core_2.13.0-2_kfreebsd-i386.deb) ...
+Unpacking r-base-core (from .../r-base-core_2.13.1-1_kfreebsd-i386.deb) ...
Selecting previously deselected package r-base-dev.
-Unpacking r-base-dev (from .../r-base-dev_2.13.0-2_all.deb) ...
-Setting up groff-base (1.21-5) ...
-Setting up libpipeline1 (1.2.0-2) ...
-Setting up man-db (2.6.0.2-1) ...
+Unpacking r-base-dev (from .../r-base-dev_2.13.1-1_all.deb) ...
+Setting up libpipeline1 (1.2.0-3) ...
+Setting up libpcre3 (8.12-4) ...
+Setting up libdatrie1 (0.2.4-3) ...
+Setting up libfreetype6 (2.4.6-1) ...
+Setting up ucf (3.0025+nmu2) ...
+Setting up ttf-dejavu-core (2.33-1) ...
+Setting up fontconfig-config (2.8.0-3) ...
+Setting up libfontconfig1 (2.8.0-3) ...
+Setting up libgfortran3 (4.6.1-6) ...
+Setting up x11-common (1:7.6+7) ...
+All runlevel operations denied by policy
+invoke-rc.d: policy-rc.d denied execution of start.
+Setting up libice6 (2:1.0.7-2) ...
+Setting up libpixman-1-0 (0.22.2-1) ...
+Setting up libxau6 (1:1.0.6-3) ...
+Setting up libxdmcp6 (1:1.1.0-3) ...
+Setting up libxcb1 (1.7-3) ...
+Setting up libx11-data (2:1.4.4-1) ...
+Setting up libx11-6 (2:1.4.4-1) ...
+Setting up libxcb-render0 (1.7-3) ...
+Setting up libxcb-shm0 (1.7-3) ...
+Setting up libxrender1 (1:0.9.6-2) ...
+Setting up libcairo2 (1.10.2-6.1) ...
+Setting up libglib2.0-0 (2.28.6-1) ...
+No schema files found: doing nothing.
+Setting up libthai-data (0.1.15-2) ...
+Setting up libthai0 (0.1.15-2) ...
+Setting up libxft2 (2.2.0-3) ...
+Setting up fontconfig (2.8.0-3) ...
+Cleaning up old fontconfig caches... done.
+Regenerating fonts cache... done.
+Setting up libpango1.0-0 (1.28.4-2) ...
+Setting up libpcrecpp0 (8.12-4) ...
+Setting up libsm6 (2:1.2.0-2) ...
+Setting up libxext6 (2:1.3.0-3) ...
+Setting up libxss1 (1:1.2.1-2) ...
+Setting up libxt6 (1:1.1.1-2) ...
+Setting up groff-base (1.21-6) ...
+Setting up man-db (2.6.0.2-2) ...
Building database of manual pages ...
Setting up libmagic1 (5.04-5+b1) ...
Setting up file (5.04-5+b1) ...
-Setting up gettext-base (0.18.1.1-3) ...
-Setting up libpcre3 (8.12-3) ...
-Setting up libxml2 (2.7.8.dfsg-2+b1) ...
-Setting up ucf (3.0025+nmu2) ...
+Setting up gettext-base (0.18.1.1-4) ...
+Setting up libxml2 (2.7.8.dfsg-4) ...
Setting up html2text (1.3.2a-15) ...
-Setting up libglib2.0-0 (2.28.6-1) ...
-No schema files found: doing nothing.
Setting up libcroco3 (0.6.2-1) ...
Setting up libunistring0 (0.9.3-4) ...
-Setting up gettext (0.18.1.1-3) ...
+Setting up gettext (0.18.1.1-4) ...
Setting up intltool-debian (0.35.0+20060710.1) ...
Setting up po-debconf (1.0.16+nmu1) ...
-Setting up debhelper (8.1.6) ...
-Setting up cdbs (0.4.94) ...
+Setting up debhelper (8.9.4) ...
+Setting up cdbs (0.4.96) ...
Setting up dpatch (2.0.31) ...
-Setting up libfreetype6 (2.4.4-1) ...
-Setting up ttf-dejavu-core (2.33-1) ...
-Setting up fontconfig-config (2.8.0-2.2) ...
-Setting up libfontconfig1 (2.8.0-2.2) ...
-Setting up fontconfig (2.8.0-2.2) ...
-Cleaning up old fontconfig caches... done.
-Regenerating fonts cache... done.
-Setting up libgfortran3 (4.6.0-10) ...
-Setting up gfortran-4.6 (4.6.0-10) ...
-Setting up gfortran (4:4.6.0-5) ...
+Setting up gfortran-4.6 (4.6.1-6) ...
+Setting up gfortran (4:4.6.1-2) ...
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode.
-Setting up libblas3gf (1.2-8) ...
+Setting up libblas3gf (1.2.20110419-2) ...
update-alternatives: using /usr/lib/libblas/libblas.so.3gf to provide /usr/lib/libblas.so.3gf (libblas.so.3gf) in auto mode.
-Setting up libblas-dev (1.2-8) ...
+Setting up libblas-dev (1.2.20110419-2) ...
update-alternatives: using /usr/lib/libblas/libblas.so to provide /usr/lib/libblas.so (libblas.so) in auto mode.
Setting up libbz2-dev (1.0.5-6) ...
-Setting up libpixman-1-0 (0.21.8-1) ...
-Setting up libxau6 (1:1.0.6-1) ...
-Setting up libxdmcp6 (1:1.1.0-1) ...
-Setting up libxcb1 (1.7-2) ...
-Setting up libx11-data (2:1.4.3-1) ...
-Setting up libx11-6 (2:1.4.3-1) ...
-Setting up libxcb-render0 (1.7-2) ...
-Setting up libxcb-shm0 (1.7-2) ...
-Setting up libxrender1 (1:0.9.6-1) ...
-Setting up libcairo2 (1.10.2-6) ...
-Setting up libdatrie1 (0.2.4-2) ...
-Setting up x11-common (1:7.6+6) ...
-All runlevel operations denied by policy
-invoke-rc.d: policy-rc.d denied execution of start.
-Setting up libice6 (2:1.0.7-1) ...
-Setting up libjpeg62 (6b1-1) ...
-Setting up libjpeg62-dev (6b1-1) ...
-Setting up liblapack3gf (3.3.0-4) ...
+Setting up libjpeg62 (6b1-2) ...
+Setting up libjpeg8 (8c-2) ...
+Setting up libjpeg8-dev (8c-2) ...
+Setting up liblapack3gf (3.3.1-1) ...
update-alternatives: using /usr/lib/lapack/liblapack.so.3gf to provide /usr/lib/liblapack.so.3gf (liblapack.so.3gf) in auto mode.
-Setting up liblapack-dev (3.3.0-4) ...
+Setting up liblapack-dev (3.3.1-1) ...
update-alternatives: using /usr/lib/lapack/liblapack.so to provide /usr/lib/liblapack.so (liblapack.so) in auto mode.
Setting up libncurses5-dev (5.9-1) ...
-Setting up libthai-data (0.1.15-1) ...
-Setting up libthai0 (0.1.15-1) ...
-Setting up libxft2 (2.2.0-2) ...
-Setting up libpango1.0-0 (1.28.3-6) ...
Setting up libpaper1 (1.1.24+nmu1) ...
Creating config file /etc/papersize with new version
Setting up libpaper-utils (1.1.24+nmu1) ...
-Setting up libpcrecpp0 (8.12-3) ...
-Setting up libpcre3-dev (8.12-3) ...
+Setting up libpcre3-dev (8.12-4) ...
Setting up zlib1g-dev (1:1.2.3.4.dfsg-3) ...
-Setting up libpng12-dev (1.2.44-2) ...
+Setting up libpng12-dev (1.2.46-3) ...
Setting up libreadline6-dev (6.2-2) ...
Setting up libreadline-dev (6.2-2) ...
-Setting up libsm6 (2:1.2.0-1) ...
Setting up libtiff4 (3.9.5-1) ...
-Setting up libxext6 (2:1.3.0-1) ...
-Setting up libxss1 (1:1.2.1-1) ...
-Setting up libxt6 (1:1.1.1-1) ...
-Setting up zip (3.0-3) ...
-Setting up unzip (6.0-4) ...
+Setting up zip (3.0-4) ...
+Setting up unzip (6.0-5) ...
Setting up xdg-utils (1.1.0~rc1-2) ...
-Setting up tcl8.5 (8.5.9-2) ...
+Setting up tcl8.5 (8.5.10-1) ...
update-alternatives: using /usr/bin/tclsh8.5 to provide /usr/bin/tclsh (tclsh) in auto mode.
-Setting up tk8.5 (8.5.9-2) ...
+Setting up tk8.5 (8.5.10-1) ...
update-alternatives: using /usr/bin/wish8.5 to provide /usr/bin/wish (wish) in auto mode.
-Setting up r-base-core (2.13.0-2) ...
+Setting up r-base-core (2.13.1-1) ...
Setting R_PAPERSIZE_USER default to 'a4'
Creating config file /etc/R/Renviron with new version
-Setting up r-base-dev (2.13.0-2) ...
+Setting up r-base-dev (2.13.1-1) ...
Removing negative dependencies:
Reading package lists...
Building dependency tree...
@@ -448,8 +454,8 @@ Reading state information...
0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
Checking correctness of dependencies...
Kernel: GNU/kFreeBSD 8.1-1-686-smp kfreebsd-i386 (i686)
-Toolchain package versions: binutils_2.21.51.20110523-1 dpkg-dev_1.16.0.3 g++-4.6_4.6.0-10 gcc-4.6_4.6.0-10 kfreebsd-kernel-headers_0.54 libc0.1-dev_2.13-4 libstdc++6_4.6.0-10 libstdc++6-4.6-dev_4.6.0-10
-Package versions: apt_0.8.14.1 autotools-dev_20110511.1 base-files_6.4 base-passwd_3.5.22 bash_4.1-3 binutils_2.21.51.20110523-1 bsdmainutils_8.2.2 bsdutils_1:2.17.2-9.1 build-essential_11.5 bzip2_1.0.5-6 cdbs_0.4.94 coreutils_8.5-1 cpio_2.11-7 cpp_4:4.6.0-5 cpp-4.6_4.6.0-10 dash_0.5.5.1-7.4 debconf_1.5.39 debconf-english_1.5.38 debfoster_2.7-1.1 debhelper_8.1.6 debian-archive-keyring_2010.08.28 debianutils_4.0.1 diffutils_1:3.0-1 dpatch_2.0.31 dpkg_1.16.0.3 dpkg-dev_1.16.0.3 e2fslibs_1.41.12-4 e2fsprogs_1.41.12-4 fakeroot_1.15.1-1 file_5.04-5+b1 findutils_4.4.2-1 fontconfig_2.8.0-2.2 fontconfig-config_2.8.0-2.2 freebsd-utils_8.1-4 g++_4:4.6.0-5 g++-4.6_4.6.0-10 gcc_4:4.6.0-5 gcc-4.2-base_4.2.4-6 gcc-4.4-base_4.4.6-3 gcc-4.5-base_4.5.3-1 gcc-4.6_4.6.0-10 gcc-4.6-base_4.6.0-10 gettext_0.18.1.1-3 gettext-base_0.18.1.1-3 gfortran_4:4.6.0-5 gfortran-4.6_4.6.0-10 gnupg_1.4.11-3 gpgv_1.4.11-3 grep_2.8-2 groff-base_1.21-5 gzip_1.3.12-9 hostname_3.06 html2text_1.3.2a-15 initscripts_2.88dsf-13.7 insserv_1.14.0-2.1 intltool-debian_0.35.0+20060710.1 kfreebsd-kernel-headers_0.54 libacl1_2.2.49-5 libattr1_1:2.4.44-3 libblas-dev_1.2-8 libblas3gf_1.2-8 libblkid1_2.17.2-9.1 libbsd0_0.2.0-1 libbz2-1.0_1.0.5-6 libbz2-dev_1.0.5-6 libc-bin_2.13-4 libc-dev-bin_2.13-4 libc0.1_2.13-4 libc0.1-dev_2.13-4 libcairo2_1.10.2-6 libcam0_8.1-5 libcloog-ppl0_0.15.9-3 libcomerr2_1.41.12-4 libcroco3_0.6.2-1 libdatrie1_0.2.4-2 libdb5.1_5.1.25-10 libdpkg-perl_1.16.0.3 libedit2_2.11-20080614-2 libexpat1_2.0.1-7 libfontconfig1_2.8.0-2.2 libfreetype6_2.4.4-1 libgc1c2_1:7.1-8 libgcc1_1:4.6.0-10 libgcrypt11_1.4.6-5 libgdbm3_1.8.3-9 libgeom0_8.1-5 libgfortran3_4.6.0-10 libglib2.0-0_2.28.6-1 libgmp10_2:5.0.1+dfsg-7 libgmpxx4ldbl_2:5.0.1+dfsg-7 libgnutls26_2.10.5-1+b1 libgomp1_4.6.0-10 libgpg-error0_1.10-0.3 libice6_2:1.0.7-1 libjpeg62_6b1-1 libjpeg62-dev_6b1-1 libkiconv4_8.1-5 libkvm0_8.1-5 liblapack-dev_3.3.0-4 liblapack3gf_3.3.0-4 libldap-2.4-2_2.4.25-1+b1 liblzma2_5.0.0-2 libmagic1_5.04-5+b1 libmpc2_0.9-3 libmpfr4_3.0.1-3 libncurses5_5.9-1 libncurses5-dev_5.9-1 libncursesw5_5.9-1 libpam-modules_1.1.2-3 libpam-runtime_1.1.2-3 libpam0g_1.1.2-3 libpango1.0-0_1.28.3-6 libpaper-utils_1.1.24+nmu1 libpaper1_1.1.24+nmu1 libpcre3_8.12-3 libpcre3-dev_8.12-3 libpcrecpp0_8.12-3 libpipeline1_1.2.0-2 libpixman-1-0_0.21.8-1 libpng12-0_1.2.44-2 libpng12-dev_1.2.44-2 libppl-c4_0.11.2-3 libppl9_0.11.2-3 libpwl5_0.11.2-3 libquadmath0_4.6.0-10 libreadline-dev_6.2-2 libreadline6_6.2-2 libreadline6-dev_6.2-2 libsasl2-2_2.1.24~rc1.dfsg1+cvs2011-05-23-2 libsbuf0_8.1-5 libslang2_2.2.4-2 libsm6_2:1.2.0-1 libss2_1.41.12-4 libstdc++6_4.6.0-10 libstdc++6-4.6-dev_4.6.0-10 libtasn1-3_2.9-3 libthai-data_0.1.15-1 libthai0_0.1.15-1 libtiff4_3.9.5-1 libtimedate-perl_1.2000-1 libunistring0_0.9.3-4 libusb-0.1-4_2:0.1.12-17 libuuid1_2.17.2-9.1 libx11-6_2:1.4.3-1 libx11-data_2:1.4.3-1 libxau6_1:1.0.6-1 libxcb-render0_1.7-2 libxcb-shm0_1.7-2 libxcb1_1.7-2 libxdmcp6_1:1.1.0-1 libxext6_2:1.3.0-1 libxft2_2.2.0-2 libxml2_2.7.8.dfsg-2+b1 libxrender1_1:0.9.6-1 libxss1_1:1.2.1-1 libxt6_1:1.1.1-1 login_1:4.1.4.2+svn3283-3 lsb-base_3.2-27 lzma_4.43-14 make_3.81-8.1 man-db_2.6.0.2-1 mawk_1.3.3-15 ncurses-base_5.9-1 ncurses-bin_5.9-1 netbase_4.45 passwd_1:4.1.4.2+svn3283-3 patch_2.6.1-2 perl_5.12.3-7 perl-base_5.12.3-7 perl-modules_5.12.3-7 po-debconf_1.0.16+nmu1 procps_1:3.2.8-10 psmisc_22.13-1 r-base-core_2.13.0-2 r-base-dev_2.13.0-2 readline-common_6.2-2 sed_4.2.1-9 sensible-utils_0.0.6 sudo_1.7.4p6-1 sysv-rc_2.88dsf-13.7 sysvinit_2.88dsf-13.7 sysvinit-utils_2.88dsf-13.7 tar_1.25-3 tcl8.5_8.5.9-2 tk8.5_8.5.9-2 ttf-dejavu-core_2.33-1 tzdata_2011g-1 ucf_3.0025+nmu2 ufsutils_8.2-1 unzip_6.0-4 util-linux_2.17.2-9.1 x11-common_1:7.6+6 xdg-utils_1.1.0~rc1-2 xz-utils_5.0.0-2 zip_3.0-3 zlib1g_1:1.2.3.4.dfsg-3 zlib1g-dev_1:1.2.3.4.dfsg-3
+Toolchain package versions: binutils_2.21.53.20110805-1 dpkg-dev_1.16.0.3 g++-4.6_4.6.1-6 gcc-4.6_4.6.1-6 kfreebsd-kernel-headers_0.56 libc0.1-dev_2.13-16 libstdc++6_4.6.1-6 libstdc++6-4.6-dev_4.6.1-6
+Package versions: apt_0.8.15.5 base-files_6.5 base-passwd_3.5.23 bash_4.1-3 binutils_2.21.53.20110805-1 bsdmainutils_8.2.3 bsdutils_1:2.19.1-5 build-essential_11.5 bzip2_1.0.5-6 cdbs_0.4.96 coreutils_8.5-1 cpp_4:4.6.1-2 cpp-4.6_4.6.1-6 dash_0.5.5.1-7.4 debconf_1.5.41 debconf-english_1.5.38 debfoster_2.7-1.1 debhelper_8.9.4 debian-archive-keyring_2010.08.28 debianutils_4.0.2 diffutils_1:3.0-1 dpatch_2.0.31 dpkg_1.16.0.3 dpkg-dev_1.16.0.3 e2fslibs_1.42~WIP-2011-07-02-1 e2fsprogs_1.42~WIP-2011-07-02-1 fakeroot_1.16-1 file_5.04-5+b1 findutils_4.4.2-1 fontconfig_2.8.0-3 fontconfig-config_2.8.0-3 freebsd-utils_8.2+ds2-5 g++_4:4.6.1-2 g++-4.6_4.6.1-6 gcc_4:4.6.1-2 gcc-4.4-base_4.4.6-8 gcc-4.5-base_4.5.3-5 gcc-4.6_4.6.1-6 gcc-4.6-base_4.6.1-6 gettext_0.18.1.1-4 gettext-base_0.18.1.1-4 gfortran_4:4.6.1-2 gfortran-4.6_4.6.1-6 gnupg_1.4.11-3 gpgv_1.4.11-3 grep_2.9-1 groff-base_1.21-6 gzip_1.4-1 hostname_3.06 html2text_1.3.2a-15 initscripts_2.88dsf-13.11 insserv_1.14.0-2.1 intltool-debian_0.35.0+20060710.1 kfreebsd-kernel-headers_0.56 libacl1_2.2.51-3 libattr1_1:2.4.46-3 libblas-dev_1.2.20110419-2 libblas3gf_1.2.20110419-2 libblkid1_2.19.1-5 libbsd0_0.3.0-1 libbz2-1.0_1.0.5-6 libbz2-dev_1.0.5-6 libc-bin_2.13-16 libc-dev-bin_2.13-16 libc0.1_2.13-16 libc0.1-dev_2.13-16 libcairo2_1.10.2-6.1 libcam0_8.2+ds1-4 libcloog-ppl0_0.15.9-3 libcomerr2_1.42~WIP-2011-07-02-1 libcroco3_0.6.2-1 libdatrie1_0.2.4-3 libdb5.1_5.1.25-11 libdpkg-perl_1.16.0.3 libexpat1_2.0.1-7 libfontconfig1_2.8.0-3 libfreetype6_2.4.6-1 libgc1c2_1:7.1-8 libgcc1_1:4.6.1-6 libgcrypt11_1.4.6-9 libgdbm3_1.8.3-10 libgeom1_8.2+ds1-4 libgfortran3_4.6.1-6 libglib2.0-0_2.28.6-1 libgmp10_2:5.0.1+dfsg-7 libgmpxx4ldbl_2:5.0.1+dfsg-7 libgnutls26_2.12.7-6 libgomp1_4.6.1-6 libgpg-error0_1.10-0.3 libgssglue1_0.3-2 libice6_2:1.0.7-2 libjail1_8.2+ds1-4 libjpeg62_6b1-2 libjpeg8_8c-2 libjpeg8-dev_8c-2 libkiconv4_8.2+ds1-4 libkvm0_8.2+ds1-4 liblapack-dev_3.3.1-1 liblapack3gf_3.3.1-1 libldap-2.4-2_2.4.25-1.1 liblzma2_5.0.0-2 libmagic1_5.04-5+b1 libmpc2_0.9-3 libmpfr4_3.0.1-5 libncurses5_5.9-1 libncurses5-dev_5.9-1 libncursesw5_5.9-1 libpam-modules_1.1.3-2 libpam-modules-bin_1.1.3-2 libpam-runtime_1.1.3-2 libpam0g_1.1.3-2 libpango1.0-0_1.28.4-2 libpaper-utils_1.1.24+nmu1 libpaper1_1.1.24+nmu1 libpcre3_8.12-4 libpcre3-dev_8.12-4 libpcrecpp0_8.12-4 libpipeline1_1.2.0-3 libpixman-1-0_0.22.2-1 libpng12-0_1.2.46-3 libpng12-dev_1.2.46-3 libppl-c4_0.11.2-4 libppl9_0.11.2-4 libpwl5_0.11.2-4 libquadmath0_4.6.1-6 libreadline-dev_6.2-2 libreadline6_6.2-2 libreadline6-dev_6.2-2 libsasl2-2_2.1.24~rc1.dfsg1+cvs2011-05-23-4 libsbuf0_8.2+ds1-4 libslang2_2.2.4-2 libsm6_2:1.2.0-2 libss2_1.42~WIP-2011-07-02-1 libstdc++6_4.6.1-6 libstdc++6-4.6-dev_4.6.1-6 libtasn1-3_2.9-4 libthai-data_0.1.15-2 libthai0_0.1.15-2 libtiff4_3.9.5-1 libtimedate-perl_1.2000-1 libtirpc1_0.2.2-5 libunistring0_0.9.3-4 libusb-0.1-4_2:0.1.12-18 libuuid1_2.19.1-5 libx11-6_2:1.4.4-1 libx11-data_2:1.4.4-1 libxau6_1:1.0.6-3 libxcb-render0_1.7-3 libxcb-shm0_1.7-3 libxcb1_1.7-3 libxdmcp6_1:1.1.0-3 libxext6_2:1.3.0-3 libxft2_2.2.0-3 libxml2_2.7.8.dfsg-4 libxrender1_1:0.9.6-2 libxss1_1:1.2.1-2 libxt6_1:1.1.1-2 login_1:4.1.4.2+svn3283-3 lsb-base_3.2-27 lzma_4.43-14 make_3.81-8.1 man-db_2.6.0.2-2 mawk_1.3.3-15 multiarch-support_2.13-16 ncurses-base_5.9-1 ncurses-bin_5.9-1 netbase_4.46 passwd_1:4.1.4.2+svn3283-3 patch_2.6.1-2 perl_5.12.4-4 perl-base_5.12.4-4 perl-modules_5.12.4-4 po-debconf_1.0.16+nmu1 procps_1:3.2.8-11 psmisc_22.13-1 r-base-core_2.13.1-1 r-base-dev_2.13.1-1 readline-common_6.2-2 sed_4.2.1-9 sensible-utils_0.0.6 sudo_1.7.4p6-1 sysv-rc_2.88dsf-13.11 sysvinit_2.88dsf-13.11 sysvinit-utils_2.88dsf-13.11 tar_1.25-3 tcl8.5_8.5.10-1 tk8.5_8.5.10-1 ttf-dejavu-core_2.33-1 type-handling_0.2.23 tzdata_2011h-3 ucf_3.0025+nmu2 unzip_6.0-5 util-linux_2.19.1-5 x11-common_1:7.6+7 xdg-utils_1.1.0~rc1-2 xz-utils_5.0.0-2 zip_3.0-4 zlib1g_1:1.2.3.4.dfsg-3 zlib1g-dev_1:1.2.3.4.dfsg-3
┌──────────────────────────────────────────────────────────────────────────────┐
│ Build │
@@ -460,12 +466,12 @@ Unpack source
─────────────
gpgv: keyblock resource `/home/buildd/.gnupg/trustedkeys.gpg': file open error
-gpgv: Signature made Thu Jun 2 04:18:41 2011 UTC using RSA key ID 2295D502
+gpgv: Signature made Sun Aug 14 11:36:35 2011 UTC using RSA key ID 2295D502
gpgv: Can't check signature: public key not found
-dpkg-source: warning: failed to verify signature on ./r-bioc-limma_3.8.2-1.dsc
-dpkg-source: info: extracting r-bioc-limma in r-bioc-limma-3.8.2
-dpkg-source: info: unpacking r-bioc-limma_3.8.2.orig.tar.gz
-dpkg-source: info: applying r-bioc-limma_3.8.2-1.diff.gz
+dpkg-source: warning: failed to verify signature on ./r-bioc-limma_3.8.3-1.dsc
+dpkg-source: info: extracting r-bioc-limma in r-bioc-limma-3.8.3
+dpkg-source: info: unpacking r-bioc-limma_3.8.3.orig.tar.gz
+dpkg-source: info: applying r-bioc-limma_3.8.3-1.diff.gz
Check disc space
────────────────
@@ -480,18 +486,18 @@ dpkg-buildpackage: export CXXFLAGS from dpkg-buildflags (origin: vendor): -g -O2
dpkg-buildpackage: export FFLAGS from dpkg-buildflags (origin: vendor): -g -O2
dpkg-buildpackage: export LDFLAGS from dpkg-buildflags (origin: vendor):
dpkg-buildpackage: source package r-bioc-limma
-dpkg-buildpackage: source version 3.8.2-1
- dpkg-source --before-build r-bioc-limma-3.8.2
+dpkg-buildpackage: source version 3.8.3-1
+ dpkg-source --before-build r-bioc-limma-3.8.3
dpkg-buildpackage: host architecture kfreebsd-i386
fakeroot debian/rules clean
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
test -x debian/rules
dh_testroot
/usr/bin/make -f debian/rules reverse-config
-/usr/share/cdbs/1/rules/simple-patchsys.mk:31: make[1]: Entering directory `/build/buildd-r-bioc-limma_3.8.2-1-kfreebsd-i386-CsLcqB/r-bioc-limma-3.8.2'
-WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
+/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
+make[1]: Entering directory `/build/buildd-r-bioc-limma_3.8.3-1-kfreebsd-i386-vFbIzQ/r-bioc-limma-3.8.3'
make[1]: Nothing to be done for `reverse-config'.
-make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.8.2-1-kfreebsd-i386-CsLcqB/r-bioc-limma-3.8.2'
+make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.8.3-1-kfreebsd-i386-vFbIzQ/r-bioc-limma-3.8.3'
if [ "reverse-patches" = "reverse-patches" ]; then rm -f debian/stamp-patched; fi
patches:
if [ "reverse-patches" != "reverse-patches" ]; then touch debian/stamp-patched; fi
@@ -512,20 +518,20 @@ rm -f config.log config.status
test -x debian/rules
mkdir -p "."
/usr/bin/make -f debian/rules reverse-config
-/usr/share/cdbs/1/rules/simple-patchsys.mk:31: make[1]: Entering directory `/build/buildd-r-bioc-limma_3.8.2-1-kfreebsd-i386-CsLcqB/r-bioc-limma-3.8.2'
-WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
+/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
+make[1]: Entering directory `/build/buildd-r-bioc-limma_3.8.3-1-kfreebsd-i386-vFbIzQ/r-bioc-limma-3.8.3'
make[1]: Nothing to be done for `reverse-config'.
-make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.8.2-1-kfreebsd-i386-CsLcqB/r-bioc-limma-3.8.2'
+make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.8.3-1-kfreebsd-i386-vFbIzQ/r-bioc-limma-3.8.3'
if [ "debian/stamp-patched" = "reverse-patches" ]; then rm -f debian/stamp-patched; fi
patches:
if [ "debian/stamp-patched" != "reverse-patches" ]; then touch debian/stamp-patched; fi
if [ "debian/stamp-patched" != "reverse-patches" ] ; then \
/usr/bin/make -f debian/rules update-config ; \
fi
-/usr/share/cdbs/1/rules/simple-patchsys.mk:31: make[1]: Entering directory `/build/buildd-r-bioc-limma_3.8.2-1-kfreebsd-i386-CsLcqB/r-bioc-limma-3.8.2'
-WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
+/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
+make[1]: Entering directory `/build/buildd-r-bioc-limma_3.8.3-1-kfreebsd-i386-vFbIzQ/r-bioc-limma-3.8.3'
make[1]: Nothing to be done for `update-config'.
-make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.8.2-1-kfreebsd-i386-CsLcqB/r-bioc-limma-3.8.2'
+make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.8.3-1-kfreebsd-i386-vFbIzQ/r-bioc-limma-3.8.3'
fakeroot debian/rules binary-arch
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
test -x debian/rules
@@ -535,24 +541,24 @@ dh_installdirs -A
mkdir -p "."
dh_installdirs usr/lib/R/site-library
if test -f /usr/bin/xvfb-run; then \
- xvfb-run \
- R CMD INSTALL -l /build/buildd-r-bioc-limma_3.8.2-1-kfreebsd-i386-CsLcqB/r-bioc-limma-3.8.2/debian/r-bioc-limma/usr/lib/R/site-library --clean \
+ xvfb-run -a \
+ R CMD INSTALL -l /build/buildd-r-bioc-limma_3.8.3-1-kfreebsd-i386-vFbIzQ/r-bioc-limma-3.8.3/debian/r-bioc-limma/usr/lib/R/site-library --clean \
. ; \
else \
- R CMD INSTALL -l /build/buildd-r-bioc-limma_3.8.2-1-kfreebsd-i386-CsLcqB/r-bioc-limma-3.8.2/debian/r-bioc-limma/usr/lib/R/site-library \
+ R CMD INSTALL -l /build/buildd-r-bioc-limma_3.8.3-1-kfreebsd-i386-vFbIzQ/r-bioc-limma-3.8.3/debian/r-bioc-limma/usr/lib/R/site-library \
--clean . ;\
fi
* installing *source* package 'limma' ...
** libs
-make[1]: Entering directory `/build/buildd-r-bioc-limma_3.8.2-1-kfreebsd-i386-CsLcqB/r-bioc-limma-3.8.2/src'
+make[1]: Entering directory `/build/buildd-r-bioc-limma_3.8.3-1-kfreebsd-i386-vFbIzQ/r-bioc-limma-3.8.3/src'
gcc -I/usr/share/R/include -fpic -std=gnu99 -O3 -pipe -g -c normexp.c -o normexp.o
normexp.c: In function 'fit_saddle_nelder_mead':
normexp.c:153:3: warning: floating constant exceeds range of 'double' [-Woverflow]
gcc -shared -o limma.so normexp.o -L/usr/lib/R/lib -lR
-make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.8.2-1-kfreebsd-i386-CsLcqB/r-bioc-limma-3.8.2/src'
-make[1]: Entering directory `/build/buildd-r-bioc-limma_3.8.2-1-kfreebsd-i386-CsLcqB/r-bioc-limma-3.8.2/src'
-make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.8.2-1-kfreebsd-i386-CsLcqB/r-bioc-limma-3.8.2/src'
-installing to /build/buildd-r-bioc-limma_3.8.2-1-kfreebsd-i386-CsLcqB/r-bioc-limma-3.8.2/debian/r-bioc-limma/usr/lib/R/site-library/limma/libs
+make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.8.3-1-kfreebsd-i386-vFbIzQ/r-bioc-limma-3.8.3/src'
+make[1]: Entering directory `/build/buildd-r-bioc-limma_3.8.3-1-kfreebsd-i386-vFbIzQ/r-bioc-limma-3.8.3/src'
+make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.8.3-1-kfreebsd-i386-vFbIzQ/r-bioc-limma-3.8.3/src'
+installing to /build/buildd-r-bioc-limma_3.8.3-1-kfreebsd-i386-vFbIzQ/r-bioc-limma-3.8.3/debian/r-bioc-limma/usr/lib/R/site-library/limma/libs
** R
** inst
** preparing package for lazy loading
@@ -562,17 +568,17 @@ installing to /build/buildd-r-bioc-limma_3.8.2-1-kfreebsd-i386-CsLcqB/r-bioc-lim
** testing if installed package can be loaded
* DONE (limma)
-rm -vf /build/buildd-r-bioc-limma_3.8.2-1-kfreebsd-i386-CsLcqB/r-bioc-limma-3.8.2/debian/r-bioc-limma/usr/lib/R/site-library/R.css \
- /build/buildd-r-bioc-limma_3.8.2-1-kfreebsd-i386-CsLcqB/r-bioc-limma-3.8.2/debian/r-bioc-limma/usr/lib/R/site-library/limma/COPYING \
- /build/buildd-r-bioc-limma_3.8.2-1-kfreebsd-i386-CsLcqB/r-bioc-limma-3.8.2/debian/r-bioc-limma/usr/lib/R/site-library/limma/LICENSE.txt
+rm -vf /build/buildd-r-bioc-limma_3.8.3-1-kfreebsd-i386-vFbIzQ/r-bioc-limma-3.8.3/debian/r-bioc-limma/usr/lib/R/site-library/R.css \
+ /build/buildd-r-bioc-limma_3.8.3-1-kfreebsd-i386-vFbIzQ/r-bioc-limma-3.8.3/debian/r-bioc-limma/usr/lib/R/site-library/limma/COPYING \
+ /build/buildd-r-bioc-limma_3.8.3-1-kfreebsd-i386-vFbIzQ/r-bioc-limma-3.8.3/debian/r-bioc-limma/usr/lib/R/site-library/limma/LICENSE.txt
if test -f debian/overrides; then \
- install -d /build/buildd-r-bioc-limma_3.8.2-1-kfreebsd-i386-CsLcqB/r-bioc-limma-3.8.2/debian/r-bioc-limma/usr/share/lintian/overrides ; \
+ install -d /build/buildd-r-bioc-limma_3.8.3-1-kfreebsd-i386-vFbIzQ/r-bioc-limma-3.8.3/debian/r-bioc-limma/usr/share/lintian/overrides ; \
install -m 0644 debian/overrides \
- /build/buildd-r-bioc-limma_3.8.2-1-kfreebsd-i386-CsLcqB/r-bioc-limma-3.8.2/debian/r-bioc-limma/usr/share/lintian/overrides/r-bioc-limma; \
+ /build/buildd-r-bioc-limma_3.8.3-1-kfreebsd-i386-vFbIzQ/r-bioc-limma-3.8.3/debian/r-bioc-limma/usr/share/lintian/overrides/r-bioc-limma; \
fi
Adding cdbs dependencies to debian/r-bioc-limma.substvars
dh_installdirs -pr-bioc-limma
-echo "R:Depends=r-base-core (>= 2.13.0~)" >> debian/r-bioc-limma.substvars
+echo "R:Depends=r-base-core (>= 2.13.1~)" >> debian/r-bioc-limma.substvars
dh_installdocs -pr-bioc-limma
dh_installexamples -pr-bioc-limma
dh_installman -pr-bioc-limma
@@ -604,58 +610,58 @@ dh_shlibdeps -pr-bioc-limma
dh_gencontrol -pr-bioc-limma
dh_md5sums -pr-bioc-limma
dh_builddeb -pr-bioc-limma
-dpkg-deb: building package `r-bioc-limma' in `../r-bioc-limma_3.8.2-1_kfreebsd-i386.deb'.
- dpkg-genchanges -B -mkfreebsd-i386 Build Daemon (finzi) <buildd_kfreebsd-i386-finzi at buildd.debian.org> >../r-bioc-limma_3.8.2-1_kfreebsd-i386.changes
+dpkg-deb: building package `r-bioc-limma' in `../r-bioc-limma_3.8.3-1_kfreebsd-i386.deb'.
+ dpkg-genchanges -B -mkfreebsd-i386 Build Daemon (field) <buildd_kfreebsd-i386-field at buildd.debian.org> >../r-bioc-limma_3.8.3-1_kfreebsd-i386.changes
dpkg-genchanges: arch-specific upload - not including arch-independent packages
dpkg-genchanges: binary-only upload - not including any source code
- dpkg-source --after-build r-bioc-limma-3.8.2
+ dpkg-source --after-build r-bioc-limma-3.8.3
dpkg-buildpackage: binary only upload (no source included)
────────────────────────────────────────────────────────────────────────────────
-Build finished at 20110602-1337
+Build finished at 20110814-1217
-r-bioc-limma_3.8.2-1_kfreebsd-i386.changes:
+r-bioc-limma_3.8.3-1_kfreebsd-i386.changes:
Format: 1.8
-Date: Thu, 02 Jun 2011 13:07:58 +0900
+Date: Sun, 14 Aug 2011 20:30:21 +0900
Source: r-bioc-limma
Binary: r-bioc-limma
Architecture: kfreebsd-i386
-Version: 3.8.2-1
+Version: 3.8.3-1
Distribution: sid
Urgency: low
-Maintainer: kfreebsd-i386 Build Daemon (finzi) <buildd_kfreebsd-i386-finzi at buildd.debian.org>
+Maintainer: kfreebsd-i386 Build Daemon (field) <buildd_kfreebsd-i386-field at buildd.debian.org>
Changed-By: Charles Plessy <plessy at debian.org>
Description:
r-bioc-limma - linear models for microarray data
-Closes: 628548
Changes:
- r-bioc-limma (3.8.2-1) unstable; urgency=low
+ r-bioc-limma (3.8.3-1) unstable; urgency=low
.
- * Initial release (closes: #628548).
+ * New upstream release.
+ * [e891bb6b] Corrected VCS-Git url.
Checksums-Sha1:
- 0d16c58148b46399fe3fdcd28f643bff633e98d0 1399056 r-bioc-limma_3.8.2-1_kfreebsd-i386.deb
+ dcdc789e93d1e968a95fa9eb5378f0c7a9e09aaf 1400828 r-bioc-limma_3.8.3-1_kfreebsd-i386.deb
Checksums-Sha256:
- 6adb287a77333fbf5a55e39de428796513b7bd2e87c451bd5a970c95b7dd9911 1399056 r-bioc-limma_3.8.2-1_kfreebsd-i386.deb
+ 57b5a35b64694e313e01aea3712e5c438cf81001ea51d131ed59b1cea343676d 1400828 r-bioc-limma_3.8.3-1_kfreebsd-i386.deb
Files:
- c38875ab051a97d38b7f1c188b64043d 1399056 gnu-r optional r-bioc-limma_3.8.2-1_kfreebsd-i386.deb
+ 65e416786ac90569976acd3921fdd081 1400828 gnu-r optional r-bioc-limma_3.8.3-1_kfreebsd-i386.deb
┌──────────────────────────────────────────────────────────────────────────────┐
│ Package contents │
└──────────────────────────────────────────────────────────────────────────────┘
-r-bioc-limma_3.8.2-1_kfreebsd-i386.deb
+r-bioc-limma_3.8.3-1_kfreebsd-i386.deb
──────────────────────────────────────
new debian package, version 2.0.
- size 1399056 bytes: control archive= 1515 bytes.
+ size 1400828 bytes: control archive= 1516 bytes.
777 bytes, 16 lines control
2226 bytes, 29 lines md5sums
Package: r-bioc-limma
- Version: 3.8.2-1
+ Version: 3.8.3-1
Architecture: kfreebsd-i386
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
Installed-Size: 1626
- Depends: libc0.1 (>= 2.3), r-base-core (>= 2.13.0~)
+ Depends: libc0.1 (>= 2.3), r-base-core (>= 2.13.1~)
Section: gnu-r
Priority: optional
Homepage: http://bioinf.wehi.edu.au/limma/
@@ -667,50 +673,50 @@ r-bioc-limma_3.8.2-1_kfreebsd-i386.deb
apply to all array platforms and treat Affymetrix, single channel and two
channel experiments in a unified way.
-drwxr-xr-x root/root 0 2011-06-02 13:37 ./
-drwxr-xr-x root/root 0 2011-06-02 13:37 ./usr/
-drwxr-xr-x root/root 0 2011-06-02 13:37 ./usr/lib/
-drwxr-xr-x root/root 0 2011-06-02 13:37 ./usr/lib/R/
-drwxr-xr-x root/root 0 2011-06-02 13:37 ./usr/lib/R/site-library/
-drwxr-xr-x root/root 0 2011-06-02 13:37 ./usr/lib/R/site-library/limma/
--rw-r--r-- root/root 1872 2011-06-02 13:37 ./usr/lib/R/site-library/limma/NAMESPACE
--rw-r--r-- root/root 1006 2011-06-02 13:37 ./usr/lib/R/site-library/limma/DESCRIPTION
-drwxr-xr-x root/root 0 2011-06-02 13:37 ./usr/lib/R/site-library/limma/Meta/
--rw-r--r-- root/root 1050 2011-06-02 13:37 ./usr/lib/R/site-library/limma/Meta/package.rds
--rw-r--r-- root/root 5946 2011-06-02 13:37 ./usr/lib/R/site-library/limma/Meta/Rd.rds
--rw-r--r-- root/root 5522 2011-06-02 13:37 ./usr/lib/R/site-library/limma/Meta/hsearch.rds
--rw-r--r-- root/root 2853 2011-06-02 13:37 ./usr/lib/R/site-library/limma/Meta/links.rds
--rw-r--r-- root/root 217 2011-06-02 13:37 ./usr/lib/R/site-library/limma/Meta/vignette.rds
--rw-r--r-- root/root 503 2011-06-02 13:37 ./usr/lib/R/site-library/limma/Meta/nsInfo.rds
-drwxr-xr-x root/root 0 2011-06-02 13:37 ./usr/lib/R/site-library/limma/libs/
--rw-r--r-- root/root 8076 2011-06-02 13:37 ./usr/lib/R/site-library/limma/libs/limma.so
-drwxr-xr-x root/root 0 2011-06-02 13:37 ./usr/lib/R/site-library/limma/R/
--rw-r--r-- root/root 384 2011-06-02 13:37 ./usr/lib/R/site-library/limma/R/limma
--rw-r--r-- root/root 172737 2011-06-02 13:37 ./usr/lib/R/site-library/limma/R/limma.rdb
--rw-r--r-- root/root 3732 2011-06-02 13:37 ./usr/lib/R/site-library/limma/R/limma.rdx
-drwxr-xr-x root/root 0 2011-06-02 13:37 ./usr/lib/R/site-library/limma/doc/
--rwxr-xr-x root/root 84633 2011-06-02 13:37 ./usr/lib/R/site-library/limma/doc/changelog.txt
--rwxr-xr-x root/root 673 2011-06-02 13:37 ./usr/lib/R/site-library/limma/doc/index.html
--rwxr-xr-x root/root 1711 2011-06-02 13:37 ./usr/lib/R/site-library/limma/doc/limma.Rnw
--rw-r--r-- root/root 45616 2011-06-02 13:37 ./usr/lib/R/site-library/limma/doc/limma.pdf
--rw-r--r-- root/root 687780 2011-06-02 13:37 ./usr/lib/R/site-library/limma/doc/usersguide.pdf
--rwxr-xr-x root/root 1230 2011-06-02 13:37 ./usr/lib/R/site-library/limma/CITATION
-drwxr-xr-x root/root 0 2011-06-02 13:37 ./usr/lib/R/site-library/limma/help/
--rw-r--r-- root/root 1348 2011-06-02 13:37 ./usr/lib/R/site-library/limma/help/paths.rds
--rw-r--r-- root/root 452022 2011-06-02 13:37 ./usr/lib/R/site-library/limma/help/limma.rdb
--rw-r--r-- root/root 3261 2011-06-02 13:37 ./usr/lib/R/site-library/limma/help/limma.rdx
--rw-r--r-- root/root 6150 2011-06-02 13:37 ./usr/lib/R/site-library/limma/help/AnIndex
--rw-r--r-- root/root 2361 2011-06-02 13:37 ./usr/lib/R/site-library/limma/help/aliases.rds
-drwxr-xr-x root/root 0 2011-06-02 13:37 ./usr/lib/R/site-library/limma/html/
--rw-r--r-- root/root 34039 2011-06-02 13:37 ./usr/lib/R/site-library/limma/html/00Index.html
--rw-r--r-- root/root 1179 2011-06-02 13:37 ./usr/lib/R/site-library/limma/html/R.css
--rw-r--r-- root/root 9360 2011-06-02 13:37 ./usr/lib/R/site-library/limma/INDEX
-drwxr-xr-x root/root 0 2011-06-02 13:37 ./usr/share/
-drwxr-xr-x root/root 0 2011-06-02 13:37 ./usr/share/doc/
-drwxr-xr-x root/root 0 2011-06-02 13:37 ./usr/share/doc/r-bioc-limma/
--rw-r--r-- root/root 2116 2011-06-02 13:37 ./usr/share/doc/r-bioc-limma/copyright
--rw-r--r-- root/root 25983 2011-05-20 04:14 ./usr/share/doc/r-bioc-limma/changelog.gz
--rw-r--r-- root/root 161 2011-06-02 13:37 ./usr/share/doc/r-bioc-limma/changelog.Debian.gz
+drwxr-xr-x root/root 0 2011-08-14 12:17 ./
+drwxr-xr-x root/root 0 2011-08-14 12:17 ./usr/
+drwxr-xr-x root/root 0 2011-08-14 12:17 ./usr/lib/
+drwxr-xr-x root/root 0 2011-08-14 12:17 ./usr/lib/R/
+drwxr-xr-x root/root 0 2011-08-14 12:17 ./usr/lib/R/site-library/
+drwxr-xr-x root/root 0 2011-08-14 12:17 ./usr/lib/R/site-library/limma/
+-rw-r--r-- root/root 1872 2011-08-14 12:17 ./usr/lib/R/site-library/limma/NAMESPACE
+-rw-r--r-- root/root 1006 2011-08-14 12:17 ./usr/lib/R/site-library/limma/DESCRIPTION
+drwxr-xr-x root/root 0 2011-08-14 12:17 ./usr/lib/R/site-library/limma/Meta/
+-rw-r--r-- root/root 1053 2011-08-14 12:17 ./usr/lib/R/site-library/limma/Meta/package.rds
+-rw-r--r-- root/root 5947 2011-08-14 12:17 ./usr/lib/R/site-library/limma/Meta/Rd.rds
+-rw-r--r-- root/root 5524 2011-08-14 12:17 ./usr/lib/R/site-library/limma/Meta/hsearch.rds
+-rw-r--r-- root/root 2854 2011-08-14 12:17 ./usr/lib/R/site-library/limma/Meta/links.rds
+-rw-r--r-- root/root 217 2011-08-14 12:17 ./usr/lib/R/site-library/limma/Meta/vignette.rds
+-rw-r--r-- root/root 505 2011-08-14 12:17 ./usr/lib/R/site-library/limma/Meta/nsInfo.rds
+drwxr-xr-x root/root 0 2011-08-14 12:17 ./usr/lib/R/site-library/limma/libs/
+-rw-r--r-- root/root 8120 2011-08-14 12:17 ./usr/lib/R/site-library/limma/libs/limma.so
+drwxr-xr-x root/root 0 2011-08-14 12:17 ./usr/lib/R/site-library/limma/R/
+-rw-r--r-- root/root 384 2011-08-14 12:17 ./usr/lib/R/site-library/limma/R/limma
+-rw-r--r-- root/root 173282 2011-08-14 12:17 ./usr/lib/R/site-library/limma/R/limma.rdb
+-rw-r--r-- root/root 3745 2011-08-14 12:17 ./usr/lib/R/site-library/limma/R/limma.rdx
+drwxr-xr-x root/root 0 2011-08-14 12:17 ./usr/lib/R/site-library/limma/doc/
+-rwxr-xr-x root/root 84899 2011-08-14 12:17 ./usr/lib/R/site-library/limma/doc/changelog.txt
+-rwxr-xr-x root/root 673 2011-08-14 12:17 ./usr/lib/R/site-library/limma/doc/index.html
+-rwxr-xr-x root/root 1711 2011-08-14 12:17 ./usr/lib/R/site-library/limma/doc/limma.Rnw
+-rw-r--r-- root/root 45616 2011-08-14 12:17 ./usr/lib/R/site-library/limma/doc/limma.pdf
+-rw-r--r-- root/root 687780 2011-08-14 12:17 ./usr/lib/R/site-library/limma/doc/usersguide.pdf
+-rwxr-xr-x root/root 1230 2011-08-14 12:17 ./usr/lib/R/site-library/limma/CITATION
+drwxr-xr-x root/root 0 2011-08-14 12:17 ./usr/lib/R/site-library/limma/help/
+-rw-r--r-- root/root 1351 2011-08-14 12:17 ./usr/lib/R/site-library/limma/help/paths.rds
+-rw-r--r-- root/root 452418 2011-08-14 12:17 ./usr/lib/R/site-library/limma/help/limma.rdb
+-rw-r--r-- root/root 3254 2011-08-14 12:17 ./usr/lib/R/site-library/limma/help/limma.rdx
+-rw-r--r-- root/root 6150 2011-08-14 12:17 ./usr/lib/R/site-library/limma/help/AnIndex
+-rw-r--r-- root/root 2363 2011-08-14 12:17 ./usr/lib/R/site-library/limma/help/aliases.rds
+drwxr-xr-x root/root 0 2011-08-14 12:17 ./usr/lib/R/site-library/limma/html/
+-rw-r--r-- root/root 34039 2011-08-14 12:17 ./usr/lib/R/site-library/limma/html/00Index.html
+-rw-r--r-- root/root 1179 2011-08-14 12:17 ./usr/lib/R/site-library/limma/html/R.css
+-rw-r--r-- root/root 9360 2011-08-14 12:17 ./usr/lib/R/site-library/limma/INDEX
+drwxr-xr-x root/root 0 2011-08-14 12:17 ./usr/share/
+drwxr-xr-x root/root 0 2011-08-14 12:17 ./usr/share/doc/
+drwxr-xr-x root/root 0 2011-08-14 12:17 ./usr/share/doc/r-bioc-limma/
+-rw-r--r-- root/root 2117 2011-08-14 12:16 ./usr/share/doc/r-bioc-limma/copyright
+-rw-r--r-- root/root 26050 2011-08-08 16:14 ./usr/share/doc/r-bioc-limma/changelog.gz
+-rw-r--r-- root/root 234 2011-08-14 12:16 ./usr/share/doc/r-bioc-limma/changelog.Debian.gz
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -724,7 +730,7 @@ Built successfully
│ Post Build │
└──────────────────────────────────────────────────────────────────────────────┘
-Purging /var/lib/schroot/mount/sid-ki-sbuild-1307021680-5194/build/buildd-r-bioc-limma_3.8.2-1-kfreebsd-i386-CsLcqB
+Purging /var/lib/schroot/mount/sid-ki-sbuild-1313324016-67786/build/buildd-r-bioc-limma_3.8.3-1-kfreebsd-i386-vFbIzQ
Reading package lists...
Building dependency tree...
Reading state information...
@@ -737,17 +743,18 @@ The following packages will be REMOVED:
gettext-base* gfortran* gfortran-4.6* groff-base* html2text*
intltool-debian* libblas-dev* libblas3gf* libbz2-dev* libcairo2* libcroco3*
libdatrie1* libfontconfig1* libfreetype6* libgfortran3* libglib2.0-0*
- libice6* libjpeg62* libjpeg62-dev* liblapack-dev* liblapack3gf* libmagic1*
- libncurses5-dev* libpango1.0-0* libpaper-utils* libpaper1* libpcre3*
- libpcre3-dev* libpcrecpp0* libpipeline1* libpixman-1-0* libpng12-dev*
- libreadline-dev* libreadline6-dev* libsm6* libthai-data* libthai0* libtiff4*
- libunistring0* libx11-6* libx11-data* libxau6* libxcb-render0* libxcb-shm0*
- libxcb1* libxdmcp6* libxext6* libxft2* libxml2* libxrender1* libxss1*
- libxt6* man-db* po-debconf* r-base-core* r-base-dev* tcl8.5* tk8.5*
- ttf-dejavu-core* ucf* unzip* x11-common* xdg-utils* zip* zlib1g-dev*
-0 upgraded, 0 newly installed, 72 to remove and 0 not upgraded.
-After this operation, 112 MB disk space will be freed.
-(Reading database ... 16049 files and directories currently installed.)
+ libice6* libjpeg62* libjpeg8* libjpeg8-dev* liblapack-dev* liblapack3gf*
+ libmagic1* libncurses5-dev* libpango1.0-0* libpaper-utils* libpaper1*
+ libpcre3* libpcre3-dev* libpcrecpp0* libpipeline1* libpixman-1-0*
+ libpng12-dev* libreadline-dev* libreadline6-dev* libsm6* libthai-data*
+ libthai0* libtiff4* libunistring0* libx11-6* libx11-data* libxau6*
+ libxcb-render0* libxcb-shm0* libxcb1* libxdmcp6* libxext6* libxft2* libxml2*
+ libxrender1* libxss1* libxt6* man-db* po-debconf* r-base-core* r-base-dev*
+ tcl8.5* tk8.5* ttf-dejavu-core* ucf* unzip* x11-common* xdg-utils* zip*
+ zlib1g-dev*
+0 upgraded, 0 newly installed, 73 to remove and 0 not upgraded.
+After this operation, 116 MB disk space will be freed.
+(Reading database ... 16079 files and directories currently installed.)
Removing r-base-dev ...
Removing cdbs ...
Removing debhelper ...
@@ -809,8 +816,9 @@ Removing libice6 ...
Purging configuration files for libice6 ...
Removing libtiff4 ...
Purging configuration files for libtiff4 ...
-Removing libjpeg62-dev ...
Removing libjpeg62 ...
+Removing libjpeg8-dev ...
+Removing libjpeg8 ...
Removing libmagic1 ...
Purging configuration files for libmagic1 ...
Removing libreadline-dev ...
@@ -864,7 +872,6 @@ Removing x11-common ...
All runlevel operations denied by policy
invoke-rc.d: policy-rc.d denied execution of stop.
Purging configuration files for x11-common ...
-dpkg: warning: while removing x11-common, directory '/etc/X11' not empty so not removed.
Removing xdg-utils ...
Removing zip ...
Removing zlib1g-dev ...
@@ -875,17 +882,17 @@ Removing zlib1g-dev ...
Architecture: kfreebsd-i386
Build-Space: 4768
-Build-Time: 29
+Build-Time: 25
Distribution: sid
-Install-Time: 127
-Job: r-bioc-limma_3.8.2-1
+Install-Time: 191
+Job: r-bioc-limma_3.8.3-1
Package: r-bioc-limma
-Package-Time: 173
-Source-Version: 3.8.2-1
+Package-Time: 228
+Source-Version: 3.8.3-1
Space: 4768
Status: successful
-Version: 3.8.2-1
+Version: 3.8.3-1
────────────────────────────────────────────────────────────────────────────────
-Finished at 20110602-1337
-Build needed 00:02:53, 4768k disc space
-Signature with key 'BB0A10AB' requested:
+Finished at 20110814-1217
+Build needed 00:03:48, 4768k disc space
+Signature with key '6B8016EE' requested:
diff --git a/mips.log b/mips.log
index 7132c25..adbe4a5 100644
--- a/mips.log
+++ b/mips.log
@@ -1,4 +1,4 @@
-From buildd2 at lucatelli.debian.org Thu Jun 02 13:37:56 2011
+From buildd2 at lucatelli.debian.org Sun Aug 14 12:23:46 2011
Return-path: <buildd2 at lucatelli.debian.org>
Received: from merikanto.debian.org ([2001:858:2:2:216:35ff:fec4:a49a])
from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
@@ -6,63 +6,63 @@ Received: from merikanto.debian.org ([2001:858:2:2:216:35ff:fec4:a49a])
EMAIL=hostmaster at merikanto.debian.org (verified)
by grieg.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
(Exim 4.72) (envelope-from <buildd2 at lucatelli.debian.org>)
- id 1QS85z-00080S-TN
- for logs at buildd.debian.org; Thu, 02 Jun 2011 13:37:56 +0000
+ id 1QsZjF-0007Vt-LU
+ for logs at buildd.debian.org; Sun, 14 Aug 2011 12:23:46 +0000
Received: from lucatelli.debian.org ([2607:f8f0:610:4000:2e0:98ff:fe00:4141])
from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
CN=lucatelli.debian.org,
EMAIL=hostmaster at lucatelli.debian.org (verified)
by merikanto.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
(Exim 4.72) (envelope-from <buildd2 at lucatelli.debian.org>)
- id 1QS85x-0007CG-Sn
- for logs at buildd.debian.org; Thu, 02 Jun 2011 13:37:54 +0000
+ id 1QsZjD-0005zS-Nb
+ for logs at buildd.debian.org; Sun, 14 Aug 2011 12:23:44 +0000
Received: from buildd2 by lucatelli.debian.org with local (Exim 4.69)
- (envelope-from <buildd2 at lucatelli.debian.org>) id 1QS85o-0003tn-2C
- for logs at buildd.debian.org; Thu, 02 Jun 2011 13:37:44 +0000
+ (envelope-from <buildd2 at lucatelli.debian.org>) id 1QsZjB-0005R0-75
+ for logs at buildd.debian.org; Sun, 14 Aug 2011 12:23:41 +0000
From: buildd on lucatelli <buildd2 at lucatelli.debian.org>
To: logs at buildd.debian.org
-Subject: Log for successful build of r-bioc-limma_3.8.2-1 on mips (dist=sid)
+Subject: Log for successful build of r-bioc-limma_3.8.3-1 on mips (dist=sid)
Content-Type: text/plain; charset=UTF-8
Content-Transfer-Encoding: 8bit
-Message-Id: <E1QS85o-0003tn-2C at lucatelli.debian.org>
-Date: Thu, 02 Jun 2011 13:37:44 +0000
+Message-Id: <E1QsZjB-0005R0-75 at lucatelli.debian.org>
+Date: Sun, 14 Aug 2011 12:23:41 +0000
Delivered-To: logs at buildd.debian.org
sbuild (Debian sbuild) 0.61.0 (23 Feb 2011) on lucatelli.debian.org
╔══════════════════════════════════════════════════════════════════════════════╗
-║ r-bioc-limma 3.8.2-1 (mips) 02 Jun 2011 13:27 ║
+║ r-bioc-limma 3.8.3-1 (mips) 14 Aug 2011 12:14 ║
╚══════════════════════════════════════════════════════════════════════════════╝
Package: r-bioc-limma
-Version: 3.8.2-1
-Source Version: 3.8.2-1
+Version: 3.8.3-1
+Source Version: 3.8.3-1
Architecture: mips
Get:1 http://mirror-ubc.debian.org unstable InRelease [146 kB]
Get:2 http://incoming.debian.org unstable InRelease [146 kB]
-Get:3 http://mirror-ubc.debian.org unstable/main Sources [5270 kB]
+Get:3 http://mirror-ubc.debian.org unstable/main Sources [5431 kB]
Ign http://incoming.debian.org InRelease
Get:4 http://incoming.debian.org Release.gpg [836 B]
-Get:5 http://incoming.debian.org unstable/main Sources [5270 kB]
-Get:6 http://mirror-ubc.debian.org unstable/contrib Sources [49.7 kB]
-Get:7 http://mirror-ubc.debian.org unstable/non-free Sources [92.2 kB]
-Get:8 http://mirror-ubc.debian.org unstable/main mips Packages [7147 kB]
-Get:9 http://mirror-ubc.debian.org unstable/contrib mips Packages [54.3 kB]
+Get:5 http://incoming.debian.org unstable/main Sources [5431 kB]
+Get:6 http://mirror-ubc.debian.org unstable/contrib Sources [52.5 kB]
+Get:7 http://mirror-ubc.debian.org unstable/non-free Sources [95.7 kB]
+Get:8 http://mirror-ubc.debian.org unstable/main mips Packages [7391 kB]
+Get:9 http://mirror-ubc.debian.org unstable/contrib mips Packages [55.0 kB]
Ign http://mirror-ubc.debian.org unstable/contrib TranslationIndex
-Get:10 http://mirror-ubc.debian.org unstable/main TranslationIndex [2264 B]
+Get:10 http://mirror-ubc.debian.org unstable/main TranslationIndex [2185 B]
Ign http://mirror-ubc.debian.org unstable/contrib Translation-en
-Get:11 http://incoming.debian.org unstable/contrib Sources [49.7 kB]
-Get:12 http://incoming.debian.org unstable/non-free Sources [92.2 kB]
-Get:13 http://incoming.debian.org unstable/main mips Packages [7147 kB]
-Get:14 http://incoming.debian.org unstable/contrib mips Packages [54.3 kB]
+Get:11 http://incoming.debian.org unstable/contrib Sources [52.5 kB]
+Get:12 http://incoming.debian.org unstable/non-free Sources [95.7 kB]
+Get:13 http://incoming.debian.org unstable/main mips Packages [7391 kB]
+Get:14 http://incoming.debian.org unstable/contrib mips Packages [55.0 kB]
Ign http://incoming.debian.org unstable/contrib TranslationIndex
-Get:15 http://incoming.debian.org unstable/main TranslationIndex [2264 B]
+Get:15 http://incoming.debian.org unstable/main TranslationIndex [2185 B]
Get:16 http://incoming.debian.org Release [1604 B]
-Get:17 http://incoming.debian.org Sources [35.2 kB]
-Get:18 http://incoming.debian.org Packages [360 kB]
+Get:17 http://incoming.debian.org Sources [25.0 kB]
+Get:18 http://incoming.debian.org Packages [110 kB]
Ign http://incoming.debian.org unstable/contrib Translation-en
Ign http://incoming.debian.org Translation-en
-Fetched 25.9 MB in 1min 13s (351 kB/s)
+Fetched 26.5 MB in 1min 13s (359 kB/s)
Reading package lists...
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -82,12 +82,12 @@ Reading package lists...
Building dependency tree...
Reading state information...
NOTICE: 'r-bioc-limma' packaging is maintained in the 'Git' version control system at:
-git://anonscm.debian.org/debian-med/r-bioc-limma.git
+git://git.debian.org/git/debian-med/r-bioc-limma.git
Need to get 921 kB of source archives.
-Get:1 http://incoming.debian.org/buildd-unstable/ r-bioc-limma 3.8.2-1 (dsc) [1931 B]
-Get:2 http://incoming.debian.org/buildd-unstable/ r-bioc-limma 3.8.2-1 (tar) [917 kB]
-Get:3 http://incoming.debian.org/buildd-unstable/ r-bioc-limma 3.8.2-1 (diff) [2158 B]
-Fetched 921 kB in 1s (673 kB/s)
+Get:1 http://incoming.debian.org/buildd-unstable/ r-bioc-limma 3.8.3-1 (dsc) [1931 B]
+Get:2 http://incoming.debian.org/buildd-unstable/ r-bioc-limma 3.8.3-1 (tar) [917 kB]
+Get:3 http://incoming.debian.org/buildd-unstable/ r-bioc-limma 3.8.3-1 (diff) [2212 B]
+Fetched 921 kB in 1s (793 kB/s)
Download complete and in download only mode
Check arch
@@ -101,18 +101,18 @@ Check arch
Build-Depends: build-essential, fakeroot
Checking for already installed dependencies...
build-essential: already installed (11.5)
-fakeroot: already installed (1.15.1-1)
+fakeroot: already installed (1.16-1)
Checking for dependency conflicts...
Installing positive dependencies:
Reading package lists...
Building dependency tree...
Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 46 not upgraded.
+0 upgraded, 0 newly installed, 0 to remove and 4 not upgraded.
Removing negative dependencies:
Reading package lists...
Building dependency tree...
Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 46 not upgraded.
+0 upgraded, 0 newly installed, 0 to remove and 4 not upgraded.
Checking correctness of dependencies...
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -121,68 +121,65 @@ Checking correctness of dependencies...
Build-Depends: base-files, base-passwd, bash, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, ncurses-base, ncurses-bin, perl-base, sed, login, sysvinit-utils, sysvinit, tar, bsdutils, mount, util-linux, libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 8), cdbs, r-base-dev (>= 2.10.0)
Checking for already installed dependencies...
-base-files: already installed (6.3)
-base-passwd: already installed (3.5.22)
+base-files: already installed (6.5)
+base-passwd: already installed (3.5.23)
bash: already installed (4.1-3)
coreutils: already installed (8.5-1)
dash: already installed (0.5.5.1-7.4)
-debianutils: already installed (3.4.4)
+debianutils: already installed (4.0.2)
diffutils: already installed (1:3.0-1)
-dpkg: already installed (1.16.0.2)
-e2fsprogs: already installed (1.41.12-2)
+dpkg: already installed (1.16.0.3)
+e2fsprogs: already installed (1.42~WIP-2011-07-02-1)
findutils: already installed (4.4.2-1+b1)
-grep: already installed (2.6.3-3)
-gzip: already installed (1.3.12-9)
+grep: already installed (2.9-1)
+gzip: already installed (1.4-1)
hostname: already installed (3.06)
ncurses-base: already installed (5.9-1)
ncurses-bin: already installed (5.9-1)
-perl-base: already installed (5.12.3-6)
+perl-base: already installed (5.12.4-4)
sed: already installed (4.2.1-9)
login: already installed (1:4.1.4.2+svn3283-3)
-sysvinit-utils: already installed (2.88dsf-13.2)
-sysvinit: already installed (2.88dsf-13.2)
+sysvinit-utils: already installed (2.88dsf-13.11)
+sysvinit: already installed (2.88dsf-13.11)
tar: already installed (1.25-3)
-bsdutils: already installed (1:2.17.2-9.1)
-mount: already installed (2.17.2-9.1)
-util-linux: already installed (2.17.2-9.1)
-libc6-dev: already installed (2.13-2)
-gcc: already installed (4:4.6.0-5 >= 4:4.4.3 is satisfied)
-g++: already installed (4:4.6.0-5 >= 4:4.4.3 is satisfied)
+bsdutils: already installed (1:2.19.1-5)
+mount: already installed (2.19.1-5)
+util-linux: already installed (2.19.1-5)
+libc6-dev: already installed (2.13-16)
+gcc: already installed (4:4.6.1-2 >= 4:4.4.3 is satisfied)
+g++: already installed (4:4.6.1-2 >= 4:4.4.3 is satisfied)
make: already installed (3.81-8.1)
-dpkg-dev: already installed (1.16.0.2 >= 1.13.5 is satisfied)
+dpkg-dev: already installed (1.16.0.3 >= 1.13.5 is satisfied)
debhelper: missing
-Using default version 8.1.6
+Using default version 8.9.4
cdbs: missing
r-base-dev: missing
-Using default version 2.13.0-2
+Using default version 2.13.1-1
Checking for dependency conflicts...
Installing positive dependencies: debhelper cdbs r-base-dev
Reading package lists...
Building dependency tree...
Reading state information...
The following extra packages will be installed:
- bsdmainutils cpp-4.6 dpatch file fontconfig fontconfig-config g++-4.6
- gcc-4.6 gcc-4.6-base gettext gettext-base gfortran gfortran-4.6 groff-base
- html2text intltool-debian libblas-dev libblas3gf libbz2-dev libcairo2
- libcroco3 libdatrie1 libexpat1 libfontconfig1 libfreetype6 libgcc1
- libgfortran3 libglib2.0-0 libgomp1 libice6 libjpeg62 libjpeg62-dev
- liblapack-dev liblapack3gf libmagic1 libncurses5-dev libpango1.0-0
- libpaper-utils libpaper1 libpcre3 libpcre3-dev libpcrecpp0 libpipeline1
- libpixman-1-0 libpng12-0 libpng12-dev libreadline-dev libreadline6
- libreadline6-dev libsm6 libstdc++6 libstdc++6-4.6-dev libthai-data libthai0
- libtiff4 libunistring0 libx11-6 libx11-data libxau6 libxcb-render0
- libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxrender1 libxss1
- libxt6 man-db po-debconf r-base-core tcl8.5 tk8.5 ttf-dejavu-core ucf unzip
- x11-common xdg-utils zip zlib1g-dev
+ bsdmainutils dpatch file fontconfig fontconfig-config gettext gettext-base
+ gfortran gfortran-4.6 groff-base html2text intltool-debian libblas-dev
+ libblas3gf libbz2-dev libcairo2 libcroco3 libdatrie1 libexpat1
+ libfontconfig1 libfreetype6 libgfortran3 libglib2.0-0 libice6 libjpeg62
+ libjpeg8 libjpeg8-dev liblapack-dev liblapack3gf libmagic1 libncurses5-dev
+ libpango1.0-0 libpaper-utils libpaper1 libpcre3 libpcre3-dev libpcrecpp0
+ libpipeline1 libpixman-1-0 libpng12-0 libpng12-dev libreadline-dev
+ libreadline6-dev libsm6 libthai-data libthai0 libtiff4 libunistring0
+ libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6
+ libxext6 libxft2 libxml2 libxrender1 libxss1 libxt6 man-db po-debconf
+ r-base-core tcl8.5 tk8.5 ttf-dejavu-core ucf unzip x11-common xdg-utils zip
+ zlib1g-dev
Suggested packages:
- wamerican wordlist whois vacation devscripts gcc-4.6-locales dh-make curl
- defoma g++-4.6-multilib gcc-4.6-doc libstdc++6-4.6-dbg gcc-4.6-multilib
- libmudflap0-4.6-dev libgcc1-dbg libgomp1-dbg libquadmath-dbg libmudflap0-dbg
- gettext-doc gfortran-multilib gfortran-doc gfortran-4.6-multilib
- gfortran-4.6-doc libgfortran3-dbg groff ncurses-doc ttf-baekmuk
- ttf-arphic-gbsn00lp ttf-arphic-bsmi00lp ttf-arphic-gkai00mp
- ttf-arphic-bkai00mp libstdc++6-4.6-doc less www-browser libmail-box-perl
- r-doc-info r-doc-pdf r-mathlib r-base-html tclreadline gvfs-bin
+ wamerican wordlist whois vacation devscripts dh-make curl defoma gettext-doc
+ gfortran-multilib gfortran-doc gfortran-4.6-multilib gfortran-4.6-doc
+ libgfortran3-dbg groff ncurses-doc ttf-baekmuk ttf-arphic-gbsn00lp
+ ttf-arphic-bsmi00lp ttf-arphic-gkai00mp ttf-arphic-bkai00mp less www-browser
+ libmail-box-perl r-doc-info r-doc-pdf r-mathlib r-base-html tclreadline
+ gvfs-bin
Recommended packages:
autotools-dev patchutils autopoint libglib2.0-data shared-mime-info
x-ttcidfont-conf xml-core libmail-sendmail-perl r-recommended r-doc-html
@@ -192,7 +189,7 @@ The following NEW packages will be installed:
gettext-base gfortran gfortran-4.6 groff-base html2text intltool-debian
libblas-dev libblas3gf libbz2-dev libcairo2 libcroco3 libdatrie1 libexpat1
libfontconfig1 libfreetype6 libgfortran3 libglib2.0-0 libice6 libjpeg62
- libjpeg62-dev liblapack-dev liblapack3gf libmagic1 libncurses5-dev
+ libjpeg8 libjpeg8-dev liblapack-dev liblapack3gf libmagic1 libncurses5-dev
libpango1.0-0 libpaper-utils libpaper1 libpcre3 libpcre3-dev libpcrecpp0
libpipeline1 libpixman-1-0 libpng12-0 libpng12-dev libreadline-dev
libreadline6-dev libsm6 libthai-data libthai0 libtiff4 libunistring0
@@ -200,385 +197,346 @@ The following NEW packages will be installed:
libxext6 libxft2 libxml2 libxrender1 libxss1 libxt6 man-db po-debconf
r-base-core r-base-dev tcl8.5 tk8.5 ttf-dejavu-core ucf unzip x11-common
xdg-utils zip zlib1g-dev
-The following packages will be upgraded:
- cpp-4.6 g++-4.6 gcc-4.6 gcc-4.6-base libgcc1 libgomp1 libreadline6
- libstdc++6 libstdc++6-4.6-dev
-9 upgraded, 75 newly installed, 0 to remove and 37 not upgraded.
-Need to get 67.6 MB of archives.
-After this operation, 127 MB of additional disk space will be used.
-Get:1 http://mirror-ubc.debian.org/debian/ unstable/main libreadline6 mips 6.2-2 [146 kB]
-Get:2 http://mirror-ubc.debian.org/debian/ unstable/main libgomp1 mips 4.6.0-10 [26.1 kB]
-Get:3 http://mirror-ubc.debian.org/debian/ unstable/main gcc-4.6-base mips 4.6.0-10 [131 kB]
-Get:4 http://mirror-ubc.debian.org/debian/ unstable/main libstdc++6 mips 4.6.0-10 [308 kB]
-Get:5 http://mirror-ubc.debian.org/debian/ unstable/main cpp-4.6 mips 4.6.0-10 [3735 kB]
-Get:6 http://mirror-ubc.debian.org/debian/ unstable/main libstdc++6-4.6-dev mips 4.6.0-10 [1723 kB]
-Get:7 http://mirror-ubc.debian.org/debian/ unstable/main g++-4.6 mips 4.6.0-10 [6285 kB]
-Get:8 http://mirror-ubc.debian.org/debian/ unstable/main gcc-4.6 mips 4.6.0-10 [4044 kB]
-Get:9 http://mirror-ubc.debian.org/debian/ unstable/main libgcc1 mips 1:4.6.0-10 [69.5 kB]
-Get:10 http://mirror-ubc.debian.org/debian/ unstable/main bsdmainutils mips 8.2.2 [210 kB]
-Get:11 http://mirror-ubc.debian.org/debian/ unstable/main groff-base mips 1.21-5 [1203 kB]
-Get:12 http://mirror-ubc.debian.org/debian/ unstable/main libpipeline1 mips 1.2.0-2 [35.5 kB]
-Get:13 http://mirror-ubc.debian.org/debian/ unstable/main man-db mips 2.6.0.2-1 [1005 kB]
-Get:14 http://mirror-ubc.debian.org/debian/ unstable/main libmagic1 mips 5.04-5+b1 [239 kB]
-Get:15 http://mirror-ubc.debian.org/debian/ unstable/main file mips 5.04-5+b1 [49.9 kB]
-Get:16 http://mirror-ubc.debian.org/debian/ unstable/main gettext-base mips 0.18.1.1-3 [153 kB]
-Get:17 http://mirror-ubc.debian.org/debian/ unstable/main libpcre3 mips 8.12-3 [262 kB]
-Get:18 http://mirror-ubc.debian.org/debian/ unstable/main libxml2 mips 2.7.8.dfsg-2+b1 [837 kB]
-Get:19 http://mirror-ubc.debian.org/debian/ unstable/main ucf all 3.0025+nmu2 [70.6 kB]
-Get:20 http://mirror-ubc.debian.org/debian/ unstable/main html2text mips 1.3.2a-15 [103 kB]
-Get:21 http://mirror-ubc.debian.org/debian/ unstable/main libglib2.0-0 mips 2.28.6-1 [1509 kB]
-Get:22 http://mirror-ubc.debian.org/debian/ unstable/main libcroco3 mips 0.6.2-1 [110 kB]
-Get:23 http://mirror-ubc.debian.org/debian/ unstable/main libunistring0 mips 0.9.3-4 [415 kB]
-Get:24 http://mirror-ubc.debian.org/debian/ unstable/main gettext mips 0.18.1.1-3 [2037 kB]
-Get:25 http://mirror-ubc.debian.org/debian/ unstable/main intltool-debian all 0.35.0+20060710.1 [30.8 kB]
-Get:26 http://mirror-ubc.debian.org/debian/ unstable/main po-debconf all 1.0.16+nmu1 [223 kB]
-Get:27 http://mirror-ubc.debian.org/debian/ unstable/main debhelper all 8.1.6 [557 kB]
-Get:28 http://mirror-ubc.debian.org/debian/ unstable/main cdbs all 0.4.94 [75.5 kB]
-Get:29 http://mirror-ubc.debian.org/debian/ unstable/main dpatch all 2.0.31 [92.3 kB]
-Get:30 http://mirror-ubc.debian.org/debian/ unstable/main libexpat1 mips 2.0.1-7 [135 kB]
-Get:31 http://mirror-ubc.debian.org/debian/ unstable/main libfreetype6 mips 2.4.4-1 [399 kB]
-Get:32 http://mirror-ubc.debian.org/debian/ unstable/main ttf-dejavu-core all 2.33-1 [1550 kB]
-Get:33 http://mirror-ubc.debian.org/debian/ unstable/main fontconfig-config all 2.8.0-2.2 [218 kB]
-Get:34 http://mirror-ubc.debian.org/debian/ unstable/main libfontconfig1 mips 2.8.0-2.2 [283 kB]
-Get:35 http://mirror-ubc.debian.org/debian/ unstable/main fontconfig mips 2.8.0-2.2 [332 kB]
-Get:36 http://mirror-ubc.debian.org/debian/ unstable/main libgfortran3 mips 4.6.0-10 [231 kB]
-Get:37 http://mirror-ubc.debian.org/debian/ unstable/main gfortran-4.6 mips 4.6.0-10 [4364 kB]
-Get:38 http://mirror-ubc.debian.org/debian/ unstable/main gfortran mips 4:4.6.0-5 [1132 B]
-Get:39 http://mirror-ubc.debian.org/debian/ unstable/main libblas3gf mips 1.2-8 [210 kB]
-Get:40 http://mirror-ubc.debian.org/debian/ unstable/main libblas-dev mips 1.2-8 [257 kB]
-Get:41 http://mirror-ubc.debian.org/debian/ unstable/main libbz2-dev mips 1.0.5-6 [37.9 kB]
-Get:42 http://mirror-ubc.debian.org/debian/ unstable/main libpixman-1-0 mips 0.21.8-1 [347 kB]
-Get:43 http://mirror-ubc.debian.org/debian/ unstable/main libpng12-0 mips 1.2.44-2 [176 kB]
-Get:44 http://mirror-ubc.debian.org/debian/ unstable/main libxau6 mips 1:1.0.6-1 [16.4 kB]
-Get:45 http://mirror-ubc.debian.org/debian/ unstable/main libxdmcp6 mips 1:1.1.0-1 [22.0 kB]
-Get:46 http://mirror-ubc.debian.org/debian/ unstable/main libxcb1 mips 1.7-2 [37.3 kB]
-Get:47 http://mirror-ubc.debian.org/debian/ unstable/main libx11-data all 2:1.4.3-1 [186 kB]
-Get:48 http://mirror-ubc.debian.org/debian/ unstable/main libx11-6 mips 2:1.4.3-1 [858 kB]
-Get:49 http://mirror-ubc.debian.org/debian/ unstable/main libxcb-render0 mips 1.7-2 [14.3 kB]
-Get:50 http://mirror-ubc.debian.org/debian/ unstable/main libxcb-shm0 mips 1.7-2 [9192 B]
-Get:51 http://mirror-ubc.debian.org/debian/ unstable/main libxrender1 mips 1:0.9.6-1 [30.5 kB]
-Get:52 http://mirror-ubc.debian.org/debian/ unstable/main libcairo2 mips 1.10.2-6 [959 kB]
-Get:53 http://mirror-ubc.debian.org/debian/ unstable/main libdatrie1 mips 0.2.4-2 [26.2 kB]
-Get:54 http://mirror-ubc.debian.org/debian/ unstable/main x11-common all 1:7.6+6 [280 kB]
-Get:55 http://mirror-ubc.debian.org/debian/ unstable/main libice6 mips 2:1.0.7-1 [49.9 kB]
-Get:56 http://mirror-ubc.debian.org/debian/ unstable/main libjpeg62 mips 6b1-1 [94.5 kB]
-Get:57 http://mirror-ubc.debian.org/debian/ unstable/main libjpeg62-dev mips 6b1-1 [207 kB]
-Get:58 http://mirror-ubc.debian.org/debian/ unstable/main liblapack3gf mips 3.3.0-4 [4548 kB]
-Get:59 http://mirror-ubc.debian.org/debian/ unstable/main liblapack-dev mips 3.3.0-4 [5191 kB]
-Get:60 http://mirror-ubc.debian.org/debian/ unstable/main libncurses5-dev mips 5.9-1 [509 kB]
-Get:61 http://mirror-ubc.debian.org/debian/ unstable/main libthai-data all 0.1.15-1 [201 kB]
-Get:62 http://mirror-ubc.debian.org/debian/ unstable/main libthai0 mips 0.1.15-1 [41.5 kB]
-Get:63 http://mirror-ubc.debian.org/debian/ unstable/main libxft2 mips 2.2.0-2 [56.5 kB]
-Get:64 http://mirror-ubc.debian.org/debian/ unstable/main libpango1.0-0 mips 1.28.3-6 [420 kB]
-Get:65 http://mirror-ubc.debian.org/debian/ unstable/main libpaper1 mips 1.1.24+nmu1 [21.3 kB]
-Get:66 http://mirror-ubc.debian.org/debian/ unstable/main libpaper-utils mips 1.1.24+nmu1 [18.2 kB]
-Get:67 http://mirror-ubc.debian.org/debian/ unstable/main libpcrecpp0 mips 8.12-3 [113 kB]
-Get:68 http://mirror-ubc.debian.org/debian/ unstable/main libpcre3-dev mips 8.12-3 [316 kB]
-Get:69 http://mirror-ubc.debian.org/debian/ unstable/main zlib1g-dev mips 1:1.2.3.4.dfsg-3 [191 kB]
-Get:70 http://mirror-ubc.debian.org/debian/ unstable/main libpng12-dev mips 1.2.44-2 [279 kB]
-Get:71 http://mirror-ubc.debian.org/debian/ unstable/main libreadline6-dev mips 6.2-2 [269 kB]
-Get:72 http://mirror-ubc.debian.org/debian/ unstable/main libreadline-dev mips 6.2-2 [880 B]
-Get:73 http://mirror-ubc.debian.org/debian/ unstable/main libsm6 mips 2:1.2.0-1 [27.9 kB]
-Get:74 http://mirror-ubc.debian.org/debian/ unstable/main libtiff4 mips 3.9.5-1 [191 kB]
-Get:75 http://mirror-ubc.debian.org/debian/ unstable/main libxext6 mips 2:1.3.0-1 [48.0 kB]
-Get:76 http://mirror-ubc.debian.org/debian/ unstable/main libxss1 mips 1:1.2.1-1 [16.4 kB]
-Get:77 http://mirror-ubc.debian.org/debian/ unstable/main libxt6 mips 1:1.1.1-1 [188 kB]
-Get:78 http://mirror-ubc.debian.org/debian/ unstable/main zip mips 3.0-3 [354 kB]
-Get:79 http://mirror-ubc.debian.org/debian/ unstable/main unzip mips 6.0-4 [202 kB]
-Get:80 http://mirror-ubc.debian.org/debian/ unstable/main xdg-utils all 1.1.0~rc1-2 [70.2 kB]
-Get:81 http://mirror-ubc.debian.org/debian/ unstable/main tcl8.5 mips 8.5.9-2 [1595 kB]
-Get:82 http://mirror-ubc.debian.org/debian/ unstable/main tk8.5 mips 8.5.9-2 [1182 kB]
-Get:83 http://mirror-ubc.debian.org/debian/ unstable/main r-base-core mips 2.13.0-2 [14.5 MB]
-Get:84 http://mirror-ubc.debian.org/debian/ unstable/main r-base-dev all 2.13.0-2 [3490 B]
+0 upgraded, 76 newly installed, 0 to remove and 4 not upgraded.
+Need to get 50.7 MB of archives.
+After this operation, 125 MB of additional disk space will be used.
+Get:1 http://mirror-ubc.debian.org/debian/ unstable/main libpipeline1 mips 1.2.0-3 [35.6 kB]
+Get:2 http://mirror-ubc.debian.org/debian/ unstable/main libpcre3 mips 8.12-4 [227 kB]
+Get:3 http://mirror-ubc.debian.org/debian/ unstable/main libdatrie1 mips 0.2.4-3 [27.0 kB]
+Get:4 http://mirror-ubc.debian.org/debian/ unstable/main libexpat1 mips 2.0.1-7 [135 kB]
+Get:5 http://mirror-ubc.debian.org/debian/ unstable/main libfreetype6 mips 2.4.6-1 [416 kB]
+Get:6 http://mirror-ubc.debian.org/debian/ unstable/main ucf all 3.0025+nmu2 [70.6 kB]
+Get:7 http://mirror-ubc.debian.org/debian/ unstable/main ttf-dejavu-core all 2.33-1 [1550 kB]
+Get:8 http://mirror-ubc.debian.org/debian/ unstable/main fontconfig-config all 2.8.0-3 [221 kB]
+Get:9 http://mirror-ubc.debian.org/debian/ unstable/main libfontconfig1 mips 2.8.0-3 [286 kB]
+Get:10 http://mirror-ubc.debian.org/debian/ unstable/main libgfortran3 mips 4.6.1-6 [231 kB]
+Get:11 http://mirror-ubc.debian.org/debian/ unstable/main x11-common all 1:7.6+7 [275 kB]
+Get:12 http://mirror-ubc.debian.org/debian/ unstable/main libice6 mips 2:1.0.7-2 [50.6 kB]
+Get:13 http://mirror-ubc.debian.org/debian/ unstable/main libpixman-1-0 mips 0.22.2-1 [339 kB]
+Get:14 http://mirror-ubc.debian.org/debian/ unstable/main libpng12-0 mips 1.2.46-3 [183 kB]
+Get:15 http://mirror-ubc.debian.org/debian/ unstable/main libxau6 mips 1:1.0.6-3 [16.6 kB]
+Get:16 http://mirror-ubc.debian.org/debian/ unstable/main libxdmcp6 mips 1:1.1.0-3 [22.3 kB]
+Get:17 http://mirror-ubc.debian.org/debian/ unstable/main libxcb1 mips 1.7-3 [38.0 kB]
+Get:18 http://mirror-ubc.debian.org/debian/ unstable/main libx11-data all 2:1.4.4-1 [183 kB]
+Get:19 http://mirror-ubc.debian.org/debian/ unstable/main libx11-6 mips 2:1.4.4-1 [858 kB]
+Get:20 http://mirror-ubc.debian.org/debian/ unstable/main libxcb-render0 mips 1.7-3 [14.5 kB]
+Get:21 http://mirror-ubc.debian.org/debian/ unstable/main libxcb-shm0 mips 1.7-3 [9354 B]
+Get:22 http://mirror-ubc.debian.org/debian/ unstable/main libxrender1 mips 1:0.9.6-2 [30.2 kB]
+Get:23 http://mirror-ubc.debian.org/debian/ unstable/main libcairo2 mips 1.10.2-6.1 [952 kB]
+Get:24 http://mirror-ubc.debian.org/debian/ unstable/main libglib2.0-0 mips 2.28.6-1 [1509 kB]
+Get:25 http://mirror-ubc.debian.org/debian/ unstable/main libthai-data all 0.1.15-2 [201 kB]
+Get:26 http://mirror-ubc.debian.org/debian/ unstable/main libthai0 mips 0.1.15-2 [41.8 kB]
+Get:27 http://mirror-ubc.debian.org/debian/ unstable/main libxft2 mips 2.2.0-3 [56.7 kB]
+Get:28 http://mirror-ubc.debian.org/debian/ unstable/main fontconfig mips 2.8.0-3 [334 kB]
+Get:29 http://mirror-ubc.debian.org/debian/ unstable/main libpango1.0-0 mips 1.28.4-2 [418 kB]
+Get:30 http://mirror-ubc.debian.org/debian/ unstable/main libpcrecpp0 mips 8.12-4 [113 kB]
+Get:31 http://mirror-ubc.debian.org/debian/ unstable/main libsm6 mips 2:1.2.0-2 [28.2 kB]
+Get:32 http://mirror-ubc.debian.org/debian/ unstable/main libxext6 mips 2:1.3.0-3 [48.4 kB]
+Get:33 http://mirror-ubc.debian.org/debian/ unstable/main libxss1 mips 1:1.2.1-2 [16.5 kB]
+Get:34 http://mirror-ubc.debian.org/debian/ unstable/main libxt6 mips 1:1.1.1-2 [189 kB]
+Get:35 http://mirror-ubc.debian.org/debian/ unstable/main bsdmainutils mips 8.2.3 [206 kB]
+Get:36 http://mirror-ubc.debian.org/debian/ unstable/main groff-base mips 1.21-6 [1152 kB]
+Get:37 http://mirror-ubc.debian.org/debian/ unstable/main man-db mips 2.6.0.2-2 [990 kB]
+Get:38 http://mirror-ubc.debian.org/debian/ unstable/main libmagic1 mips 5.04-5+b1 [239 kB]
+Get:39 http://mirror-ubc.debian.org/debian/ unstable/main file mips 5.04-5+b1 [49.9 kB]
+Get:40 http://mirror-ubc.debian.org/debian/ unstable/main gettext-base mips 0.18.1.1-4 [142 kB]
+Get:41 http://mirror-ubc.debian.org/debian/ unstable/main libxml2 mips 2.7.8.dfsg-4 [858 kB]
+Get:42 http://mirror-ubc.debian.org/debian/ unstable/main html2text mips 1.3.2a-15 [103 kB]
+Get:43 http://mirror-ubc.debian.org/debian/ unstable/main libcroco3 mips 0.6.2-1 [110 kB]
+Get:44 http://mirror-ubc.debian.org/debian/ unstable/main libunistring0 mips 0.9.3-4 [415 kB]
+Get:45 http://mirror-ubc.debian.org/debian/ unstable/main gettext mips 0.18.1.1-4 [2025 kB]
+Get:46 http://mirror-ubc.debian.org/debian/ unstable/main intltool-debian all 0.35.0+20060710.1 [30.8 kB]
+Get:47 http://mirror-ubc.debian.org/debian/ unstable/main po-debconf all 1.0.16+nmu1 [223 kB]
+Get:48 http://mirror-ubc.debian.org/debian/ unstable/main debhelper all 8.9.4 [561 kB]
+Get:49 http://mirror-ubc.debian.org/debian/ unstable/main cdbs all 0.4.96 [75.8 kB]
+Get:50 http://mirror-ubc.debian.org/debian/ unstable/main dpatch all 2.0.31 [92.3 kB]
+Get:51 http://mirror-ubc.debian.org/debian/ unstable/main gfortran-4.6 mips 4.6.1-6 [4365 kB]
+Get:52 http://mirror-ubc.debian.org/debian/ unstable/main gfortran mips 4:4.6.1-2 [1126 B]
+Get:53 http://mirror-ubc.debian.org/debian/ unstable/main libblas3gf mips 1.2.20110419-2 [203 kB]
+Get:54 http://mirror-ubc.debian.org/debian/ unstable/main libblas-dev mips 1.2.20110419-2 [243 kB]
+Get:55 http://mirror-ubc.debian.org/debian/ unstable/main libbz2-dev mips 1.0.5-6 [37.9 kB]
+Get:56 http://mirror-ubc.debian.org/debian/ unstable/main libjpeg62 mips 6b1-2 [92.9 kB]
+Get:57 http://mirror-ubc.debian.org/debian/ unstable/main libjpeg8 mips 8c-2 [144 kB]
+Get:58 http://mirror-ubc.debian.org/debian/ unstable/main libjpeg8-dev mips 8c-2 [257 kB]
+Get:59 http://mirror-ubc.debian.org/debian/ unstable/main liblapack3gf mips 3.3.1-1 [4250 kB]
+Get:60 http://mirror-ubc.debian.org/debian/ unstable/main liblapack-dev mips 3.3.1-1 [4908 kB]
+Get:61 http://mirror-ubc.debian.org/debian/ unstable/main libncurses5-dev mips 5.9-1 [509 kB]
+Get:62 http://mirror-ubc.debian.org/debian/ unstable/main libpaper1 mips 1.1.24+nmu1 [21.3 kB]
+Get:63 http://mirror-ubc.debian.org/debian/ unstable/main libpaper-utils mips 1.1.24+nmu1 [18.2 kB]
+Get:64 http://mirror-ubc.debian.org/debian/ unstable/main libpcre3-dev mips 8.12-4 [318 kB]
+Get:65 http://mirror-ubc.debian.org/debian/ unstable/main zlib1g-dev mips 1:1.2.3.4.dfsg-3 [191 kB]
+Get:66 http://mirror-ubc.debian.org/debian/ unstable/main libpng12-dev mips 1.2.46-3 [275 kB]
+Get:67 http://mirror-ubc.debian.org/debian/ unstable/main libreadline6-dev mips 6.2-2 [269 kB]
+Get:68 http://mirror-ubc.debian.org/debian/ unstable/main libreadline-dev mips 6.2-2 [880 B]
+Get:69 http://mirror-ubc.debian.org/debian/ unstable/main libtiff4 mips 3.9.5-1 [191 kB]
+Get:70 http://mirror-ubc.debian.org/debian/ unstable/main zip mips 3.0-4 [332 kB]
+Get:71 http://mirror-ubc.debian.org/debian/ unstable/main unzip mips 6.0-5 [189 kB]
+Get:72 http://mirror-ubc.debian.org/debian/ unstable/main xdg-utils all 1.1.0~rc1-2 [70.2 kB]
+Get:73 http://mirror-ubc.debian.org/debian/ unstable/main tcl8.5 mips 8.5.10-1 [1610 kB]
+Get:74 http://mirror-ubc.debian.org/debian/ unstable/main tk8.5 mips 8.5.10-1 [1172 kB]
+Get:75 http://mirror-ubc.debian.org/debian/ unstable/main r-base-core mips 2.13.1-1 [14.6 MB]
+Get:76 http://mirror-ubc.debian.org/debian/ unstable/main r-base-dev all 2.13.1-1 [3490 B]
debconf: delaying package configuration, since apt-utils is not installed
-Fetched 67.6 MB in 11s (5861 kB/s)
-(Reading database ... 11390 files and directories currently installed.)
-Preparing to replace libreadline6 6.2-1 (using .../libreadline6_6.2-2_mips.deb) ...
-Unpacking replacement libreadline6 ...
-Setting up libreadline6 (6.2-2) ...
-(Reading database ... 11390 files and directories currently installed.)
-Preparing to replace libgomp1 4.6.0-6 (using .../libgomp1_4.6.0-10_mips.deb) ...
-Unpacking replacement libgomp1 ...
-Preparing to replace gcc-4.6-base 4.6.0-6 (using .../gcc-4.6-base_4.6.0-10_mips.deb) ...
-Unpacking replacement gcc-4.6-base ...
-Setting up gcc-4.6-base (4.6.0-10) ...
-(Reading database ... 11389 files and directories currently installed.)
-Preparing to replace libstdc++6 4.6.0-6 (using .../libstdc++6_4.6.0-10_mips.deb) ...
-Unpacking replacement libstdc++6 ...
-Setting up libstdc++6 (4.6.0-10) ...
-(Reading database ... 11389 files and directories currently installed.)
-Preparing to replace cpp-4.6 4.6.0-6 (using .../cpp-4.6_4.6.0-10_mips.deb) ...
-Unpacking replacement cpp-4.6 ...
-Preparing to replace libstdc++6-4.6-dev 4.6.0-6 (using .../libstdc++6-4.6-dev_4.6.0-10_mips.deb) ...
-Unpacking replacement libstdc++6-4.6-dev ...
-Preparing to replace g++-4.6 4.6.0-6 (using .../g++-4.6_4.6.0-10_mips.deb) ...
-Unpacking replacement g++-4.6 ...
-Preparing to replace gcc-4.6 4.6.0-6 (using .../gcc-4.6_4.6.0-10_mips.deb) ...
-Unpacking replacement gcc-4.6 ...
-Preparing to replace libgcc1 1:4.6.0-6 (using .../libgcc1_1%3a4.6.0-10_mips.deb) ...
-Unpacking replacement libgcc1 ...
-Setting up libgcc1 (1:4.6.0-10) ...
+Fetched 50.7 MB in 8s (6033 kB/s)
+Selecting previously deselected package libpipeline1.
+(Reading database ... 10666 files and directories currently installed.)
+Unpacking libpipeline1 (from .../libpipeline1_1.2.0-3_mips.deb) ...
+Selecting previously deselected package libpcre3.
+Unpacking libpcre3 (from .../libpcre3_8.12-4_mips.deb) ...
+Selecting previously deselected package libdatrie1.
+Unpacking libdatrie1 (from .../libdatrie1_0.2.4-3_mips.deb) ...
+Selecting previously deselected package libexpat1.
+Unpacking libexpat1 (from .../libexpat1_2.0.1-7_mips.deb) ...
+Selecting previously deselected package libfreetype6.
+Unpacking libfreetype6 (from .../libfreetype6_2.4.6-1_mips.deb) ...
+Selecting previously deselected package ucf.
+Unpacking ucf (from .../ucf_3.0025+nmu2_all.deb) ...
+Moving old data out of the way
+Selecting previously deselected package ttf-dejavu-core.
+Unpacking ttf-dejavu-core (from .../ttf-dejavu-core_2.33-1_all.deb) ...
+Selecting previously deselected package fontconfig-config.
+Unpacking fontconfig-config (from .../fontconfig-config_2.8.0-3_all.deb) ...
+Selecting previously deselected package libfontconfig1.
+Unpacking libfontconfig1 (from .../libfontconfig1_2.8.0-3_mips.deb) ...
+Selecting previously deselected package libgfortran3.
+Unpacking libgfortran3 (from .../libgfortran3_4.6.1-6_mips.deb) ...
+Selecting previously deselected package x11-common.
+Unpacking x11-common (from .../x11-common_1%3a7.6+7_all.deb) ...
+Selecting previously deselected package libice6.
+Unpacking libice6 (from .../libice6_2%3a1.0.7-2_mips.deb) ...
+Selecting previously deselected package libpixman-1-0.
+Unpacking libpixman-1-0 (from .../libpixman-1-0_0.22.2-1_mips.deb) ...
+Selecting previously deselected package libpng12-0.
+Unpacking libpng12-0 (from .../libpng12-0_1.2.46-3_mips.deb) ...
+Selecting previously deselected package libxau6.
+Unpacking libxau6 (from .../libxau6_1%3a1.0.6-3_mips.deb) ...
+Selecting previously deselected package libxdmcp6.
+Unpacking libxdmcp6 (from .../libxdmcp6_1%3a1.1.0-3_mips.deb) ...
+Selecting previously deselected package libxcb1.
+Unpacking libxcb1 (from .../libxcb1_1.7-3_mips.deb) ...
+Selecting previously deselected package libx11-data.
+Unpacking libx11-data (from .../libx11-data_2%3a1.4.4-1_all.deb) ...
+Selecting previously deselected package libx11-6.
+Unpacking libx11-6 (from .../libx11-6_2%3a1.4.4-1_mips.deb) ...
+Selecting previously deselected package libxcb-render0.
+Unpacking libxcb-render0 (from .../libxcb-render0_1.7-3_mips.deb) ...
+Selecting previously deselected package libxcb-shm0.
+Unpacking libxcb-shm0 (from .../libxcb-shm0_1.7-3_mips.deb) ...
+Selecting previously deselected package libxrender1.
+Unpacking libxrender1 (from .../libxrender1_1%3a0.9.6-2_mips.deb) ...
+Selecting previously deselected package libcairo2.
+Unpacking libcairo2 (from .../libcairo2_1.10.2-6.1_mips.deb) ...
+Selecting previously deselected package libglib2.0-0.
+Unpacking libglib2.0-0 (from .../libglib2.0-0_2.28.6-1_mips.deb) ...
+Selecting previously deselected package libthai-data.
+Unpacking libthai-data (from .../libthai-data_0.1.15-2_all.deb) ...
+Selecting previously deselected package libthai0.
+Unpacking libthai0 (from .../libthai0_0.1.15-2_mips.deb) ...
+Selecting previously deselected package libxft2.
+Unpacking libxft2 (from .../libxft2_2.2.0-3_mips.deb) ...
+Selecting previously deselected package fontconfig.
+Unpacking fontconfig (from .../fontconfig_2.8.0-3_mips.deb) ...
+Selecting previously deselected package libpango1.0-0.
+Unpacking libpango1.0-0 (from .../libpango1.0-0_1.28.4-2_mips.deb) ...
+Selecting previously deselected package libpcrecpp0.
+Unpacking libpcrecpp0 (from .../libpcrecpp0_8.12-4_mips.deb) ...
+Selecting previously deselected package libsm6.
+Unpacking libsm6 (from .../libsm6_2%3a1.2.0-2_mips.deb) ...
+Selecting previously deselected package libxext6.
+Unpacking libxext6 (from .../libxext6_2%3a1.3.0-3_mips.deb) ...
+Selecting previously deselected package libxss1.
+Unpacking libxss1 (from .../libxss1_1%3a1.2.1-2_mips.deb) ...
+Selecting previously deselected package libxt6.
+Unpacking libxt6 (from .../libxt6_1%3a1.1.1-2_mips.deb) ...
Selecting previously deselected package bsdmainutils.
-(Reading database ... 11389 files and directories currently installed.)
-Unpacking bsdmainutils (from .../bsdmainutils_8.2.2_mips.deb) ...
+Unpacking bsdmainutils (from .../bsdmainutils_8.2.3_mips.deb) ...
Selecting previously deselected package groff-base.
-Unpacking groff-base (from .../groff-base_1.21-5_mips.deb) ...
-Selecting previously deselected package libpipeline1.
-Unpacking libpipeline1 (from .../libpipeline1_1.2.0-2_mips.deb) ...
+Unpacking groff-base (from .../groff-base_1.21-6_mips.deb) ...
Selecting previously deselected package man-db.
-Unpacking man-db (from .../man-db_2.6.0.2-1_mips.deb) ...
+Unpacking man-db (from .../man-db_2.6.0.2-2_mips.deb) ...
Selecting previously deselected package libmagic1.
Unpacking libmagic1 (from .../libmagic1_5.04-5+b1_mips.deb) ...
Selecting previously deselected package file.
Unpacking file (from .../file_5.04-5+b1_mips.deb) ...
Selecting previously deselected package gettext-base.
-Unpacking gettext-base (from .../gettext-base_0.18.1.1-3_mips.deb) ...
-Selecting previously deselected package libpcre3.
-Unpacking libpcre3 (from .../libpcre3_8.12-3_mips.deb) ...
+Unpacking gettext-base (from .../gettext-base_0.18.1.1-4_mips.deb) ...
Selecting previously deselected package libxml2.
-Unpacking libxml2 (from .../libxml2_2.7.8.dfsg-2+b1_mips.deb) ...
-Selecting previously deselected package ucf.
-Unpacking ucf (from .../ucf_3.0025+nmu2_all.deb) ...
-Moving old data out of the way
+Unpacking libxml2 (from .../libxml2_2.7.8.dfsg-4_mips.deb) ...
Selecting previously deselected package html2text.
Unpacking html2text (from .../html2text_1.3.2a-15_mips.deb) ...
-Selecting previously deselected package libglib2.0-0.
-Unpacking libglib2.0-0 (from .../libglib2.0-0_2.28.6-1_mips.deb) ...
Selecting previously deselected package libcroco3.
Unpacking libcroco3 (from .../libcroco3_0.6.2-1_mips.deb) ...
Selecting previously deselected package libunistring0.
Unpacking libunistring0 (from .../libunistring0_0.9.3-4_mips.deb) ...
Selecting previously deselected package gettext.
-Unpacking gettext (from .../gettext_0.18.1.1-3_mips.deb) ...
+Unpacking gettext (from .../gettext_0.18.1.1-4_mips.deb) ...
Selecting previously deselected package intltool-debian.
Unpacking intltool-debian (from .../intltool-debian_0.35.0+20060710.1_all.deb) ...
Selecting previously deselected package po-debconf.
Unpacking po-debconf (from .../po-debconf_1.0.16+nmu1_all.deb) ...
Selecting previously deselected package debhelper.
-Unpacking debhelper (from .../debhelper_8.1.6_all.deb) ...
+Unpacking debhelper (from .../debhelper_8.9.4_all.deb) ...
Selecting previously deselected package cdbs.
-Unpacking cdbs (from .../archives/cdbs_0.4.94_all.deb) ...
+Unpacking cdbs (from .../archives/cdbs_0.4.96_all.deb) ...
Selecting previously deselected package dpatch.
Unpacking dpatch (from .../archives/dpatch_2.0.31_all.deb) ...
-Selecting previously deselected package libexpat1.
-Unpacking libexpat1 (from .../libexpat1_2.0.1-7_mips.deb) ...
-Selecting previously deselected package libfreetype6.
-Unpacking libfreetype6 (from .../libfreetype6_2.4.4-1_mips.deb) ...
-Selecting previously deselected package ttf-dejavu-core.
-Unpacking ttf-dejavu-core (from .../ttf-dejavu-core_2.33-1_all.deb) ...
-Selecting previously deselected package fontconfig-config.
-Unpacking fontconfig-config (from .../fontconfig-config_2.8.0-2.2_all.deb) ...
-Selecting previously deselected package libfontconfig1.
-Unpacking libfontconfig1 (from .../libfontconfig1_2.8.0-2.2_mips.deb) ...
-Selecting previously deselected package fontconfig.
-Unpacking fontconfig (from .../fontconfig_2.8.0-2.2_mips.deb) ...
-Selecting previously deselected package libgfortran3.
-Unpacking libgfortran3 (from .../libgfortran3_4.6.0-10_mips.deb) ...
Selecting previously deselected package gfortran-4.6.
-Unpacking gfortran-4.6 (from .../gfortran-4.6_4.6.0-10_mips.deb) ...
+Unpacking gfortran-4.6 (from .../gfortran-4.6_4.6.1-6_mips.deb) ...
Selecting previously deselected package gfortran.
-Unpacking gfortran (from .../gfortran_4%3a4.6.0-5_mips.deb) ...
+Unpacking gfortran (from .../gfortran_4%3a4.6.1-2_mips.deb) ...
Selecting previously deselected package libblas3gf.
-Unpacking libblas3gf (from .../libblas3gf_1.2-8_mips.deb) ...
+Unpacking libblas3gf (from .../libblas3gf_1.2.20110419-2_mips.deb) ...
Selecting previously deselected package libblas-dev.
-Unpacking libblas-dev (from .../libblas-dev_1.2-8_mips.deb) ...
+Unpacking libblas-dev (from .../libblas-dev_1.2.20110419-2_mips.deb) ...
Selecting previously deselected package libbz2-dev.
Unpacking libbz2-dev (from .../libbz2-dev_1.0.5-6_mips.deb) ...
-Selecting previously deselected package libpixman-1-0.
-Unpacking libpixman-1-0 (from .../libpixman-1-0_0.21.8-1_mips.deb) ...
-Selecting previously deselected package libpng12-0.
-Unpacking libpng12-0 (from .../libpng12-0_1.2.44-2_mips.deb) ...
-Selecting previously deselected package libxau6.
-Unpacking libxau6 (from .../libxau6_1%3a1.0.6-1_mips.deb) ...
-Selecting previously deselected package libxdmcp6.
-Unpacking libxdmcp6 (from .../libxdmcp6_1%3a1.1.0-1_mips.deb) ...
-Selecting previously deselected package libxcb1.
-Unpacking libxcb1 (from .../libxcb1_1.7-2_mips.deb) ...
-Selecting previously deselected package libx11-data.
-Unpacking libx11-data (from .../libx11-data_2%3a1.4.3-1_all.deb) ...
-Selecting previously deselected package libx11-6.
-Unpacking libx11-6 (from .../libx11-6_2%3a1.4.3-1_mips.deb) ...
-Selecting previously deselected package libxcb-render0.
-Unpacking libxcb-render0 (from .../libxcb-render0_1.7-2_mips.deb) ...
-Selecting previously deselected package libxcb-shm0.
-Unpacking libxcb-shm0 (from .../libxcb-shm0_1.7-2_mips.deb) ...
-Selecting previously deselected package libxrender1.
-Unpacking libxrender1 (from .../libxrender1_1%3a0.9.6-1_mips.deb) ...
-Selecting previously deselected package libcairo2.
-Unpacking libcairo2 (from .../libcairo2_1.10.2-6_mips.deb) ...
-Selecting previously deselected package libdatrie1.
-Unpacking libdatrie1 (from .../libdatrie1_0.2.4-2_mips.deb) ...
-Selecting previously deselected package x11-common.
-Unpacking x11-common (from .../x11-common_1%3a7.6+6_all.deb) ...
-Selecting previously deselected package libice6.
-Unpacking libice6 (from .../libice6_2%3a1.0.7-1_mips.deb) ...
Selecting previously deselected package libjpeg62.
-Unpacking libjpeg62 (from .../libjpeg62_6b1-1_mips.deb) ...
-Selecting previously deselected package libjpeg62-dev.
-Unpacking libjpeg62-dev (from .../libjpeg62-dev_6b1-1_mips.deb) ...
+Unpacking libjpeg62 (from .../libjpeg62_6b1-2_mips.deb) ...
+Selecting previously deselected package libjpeg8.
+Unpacking libjpeg8 (from .../libjpeg8_8c-2_mips.deb) ...
+Selecting previously deselected package libjpeg8-dev.
+Unpacking libjpeg8-dev (from .../libjpeg8-dev_8c-2_mips.deb) ...
Selecting previously deselected package liblapack3gf.
-Unpacking liblapack3gf (from .../liblapack3gf_3.3.0-4_mips.deb) ...
+Unpacking liblapack3gf (from .../liblapack3gf_3.3.1-1_mips.deb) ...
Selecting previously deselected package liblapack-dev.
-Unpacking liblapack-dev (from .../liblapack-dev_3.3.0-4_mips.deb) ...
+Unpacking liblapack-dev (from .../liblapack-dev_3.3.1-1_mips.deb) ...
Selecting previously deselected package libncurses5-dev.
Unpacking libncurses5-dev (from .../libncurses5-dev_5.9-1_mips.deb) ...
-Selecting previously deselected package libthai-data.
-Unpacking libthai-data (from .../libthai-data_0.1.15-1_all.deb) ...
-Selecting previously deselected package libthai0.
-Unpacking libthai0 (from .../libthai0_0.1.15-1_mips.deb) ...
-Selecting previously deselected package libxft2.
-Unpacking libxft2 (from .../libxft2_2.2.0-2_mips.deb) ...
-Selecting previously deselected package libpango1.0-0.
-Unpacking libpango1.0-0 (from .../libpango1.0-0_1.28.3-6_mips.deb) ...
Selecting previously deselected package libpaper1.
Unpacking libpaper1 (from .../libpaper1_1.1.24+nmu1_mips.deb) ...
Selecting previously deselected package libpaper-utils.
Unpacking libpaper-utils (from .../libpaper-utils_1.1.24+nmu1_mips.deb) ...
-Selecting previously deselected package libpcrecpp0.
-Unpacking libpcrecpp0 (from .../libpcrecpp0_8.12-3_mips.deb) ...
Selecting previously deselected package libpcre3-dev.
-Unpacking libpcre3-dev (from .../libpcre3-dev_8.12-3_mips.deb) ...
+Unpacking libpcre3-dev (from .../libpcre3-dev_8.12-4_mips.deb) ...
Selecting previously deselected package zlib1g-dev.
Unpacking zlib1g-dev (from .../zlib1g-dev_1%3a1.2.3.4.dfsg-3_mips.deb) ...
Selecting previously deselected package libpng12-dev.
-Unpacking libpng12-dev (from .../libpng12-dev_1.2.44-2_mips.deb) ...
+Unpacking libpng12-dev (from .../libpng12-dev_1.2.46-3_mips.deb) ...
Selecting previously deselected package libreadline6-dev.
Unpacking libreadline6-dev (from .../libreadline6-dev_6.2-2_mips.deb) ...
Selecting previously deselected package libreadline-dev.
Unpacking libreadline-dev (from .../libreadline-dev_6.2-2_mips.deb) ...
-Selecting previously deselected package libsm6.
-Unpacking libsm6 (from .../libsm6_2%3a1.2.0-1_mips.deb) ...
Selecting previously deselected package libtiff4.
Unpacking libtiff4 (from .../libtiff4_3.9.5-1_mips.deb) ...
-Selecting previously deselected package libxext6.
-Unpacking libxext6 (from .../libxext6_2%3a1.3.0-1_mips.deb) ...
-Selecting previously deselected package libxss1.
-Unpacking libxss1 (from .../libxss1_1%3a1.2.1-1_mips.deb) ...
-Selecting previously deselected package libxt6.
-Unpacking libxt6 (from .../libxt6_1%3a1.1.1-1_mips.deb) ...
Selecting previously deselected package zip.
-Unpacking zip (from .../archives/zip_3.0-3_mips.deb) ...
+Unpacking zip (from .../archives/zip_3.0-4_mips.deb) ...
Selecting previously deselected package unzip.
-Unpacking unzip (from .../archives/unzip_6.0-4_mips.deb) ...
+Unpacking unzip (from .../archives/unzip_6.0-5_mips.deb) ...
Selecting previously deselected package xdg-utils.
Unpacking xdg-utils (from .../xdg-utils_1.1.0~rc1-2_all.deb) ...
Selecting previously deselected package tcl8.5.
-Unpacking tcl8.5 (from .../tcl8.5_8.5.9-2_mips.deb) ...
+Unpacking tcl8.5 (from .../tcl8.5_8.5.10-1_mips.deb) ...
Selecting previously deselected package tk8.5.
-Unpacking tk8.5 (from .../tk8.5_8.5.9-2_mips.deb) ...
+Unpacking tk8.5 (from .../tk8.5_8.5.10-1_mips.deb) ...
Selecting previously deselected package r-base-core.
-Unpacking r-base-core (from .../r-base-core_2.13.0-2_mips.deb) ...
+Unpacking r-base-core (from .../r-base-core_2.13.1-1_mips.deb) ...
Selecting previously deselected package r-base-dev.
-Unpacking r-base-dev (from .../r-base-dev_2.13.0-2_all.deb) ...
-Setting up libgomp1 (4.6.0-10) ...
-Setting up cpp-4.6 (4.6.0-10) ...
-Setting up gcc-4.6 (4.6.0-10) ...
-Setting up bsdmainutils (8.2.2) ...
+Unpacking r-base-dev (from .../r-base-dev_2.13.1-1_all.deb) ...
+Setting up libpipeline1 (1.2.0-3) ...
+Setting up libpcre3 (8.12-4) ...
+Setting up libdatrie1 (0.2.4-3) ...
+Setting up libexpat1 (2.0.1-7) ...
+Setting up libfreetype6 (2.4.6-1) ...
+Setting up ucf (3.0025+nmu2) ...
+Setting up ttf-dejavu-core (2.33-1) ...
+Setting up fontconfig-config (2.8.0-3) ...
+Setting up libfontconfig1 (2.8.0-3) ...
+Setting up libgfortran3 (4.6.1-6) ...
+Setting up x11-common (1:7.6+7) ...
+All runlevel operations denied by policy
+invoke-rc.d: policy-rc.d denied execution of start.
+Setting up libice6 (2:1.0.7-2) ...
+Setting up libpixman-1-0 (0.22.2-1) ...
+Setting up libpng12-0 (1.2.46-3) ...
+Setting up libxau6 (1:1.0.6-3) ...
+Setting up libxdmcp6 (1:1.1.0-3) ...
+Setting up libxcb1 (1.7-3) ...
+Setting up libx11-data (2:1.4.4-1) ...
+Setting up libx11-6 (2:1.4.4-1) ...
+Setting up libxcb-render0 (1.7-3) ...
+Setting up libxcb-shm0 (1.7-3) ...
+Setting up libxrender1 (1:0.9.6-2) ...
+Setting up libcairo2 (1.10.2-6.1) ...
+Setting up libglib2.0-0 (2.28.6-1) ...
+No schema files found: doing nothing.
+Setting up libthai-data (0.1.15-2) ...
+Setting up libthai0 (0.1.15-2) ...
+Setting up libxft2 (2.2.0-3) ...
+Setting up fontconfig (2.8.0-3) ...
+Cleaning up old fontconfig caches... done.
+Regenerating fonts cache... done.
+Setting up libpango1.0-0 (1.28.4-2) ...
+Setting up libpcrecpp0 (8.12-4) ...
+Setting up libsm6 (2:1.2.0-2) ...
+Setting up libxext6 (2:1.3.0-3) ...
+Setting up libxss1 (1:1.2.1-2) ...
+Setting up libxt6 (1:1.1.1-2) ...
+Setting up bsdmainutils (8.2.3) ...
update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode.
update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode.
-Setting up groff-base (1.21-5) ...
-Setting up libpipeline1 (1.2.0-2) ...
-Setting up man-db (2.6.0.2-1) ...
+Setting up groff-base (1.21-6) ...
+Setting up man-db (2.6.0.2-2) ...
Building database of manual pages ...
Setting up libmagic1 (5.04-5+b1) ...
Setting up file (5.04-5+b1) ...
-Setting up gettext-base (0.18.1.1-3) ...
-Setting up libpcre3 (8.12-3) ...
-Setting up libxml2 (2.7.8.dfsg-2+b1) ...
-Setting up ucf (3.0025+nmu2) ...
+Setting up gettext-base (0.18.1.1-4) ...
+Setting up libxml2 (2.7.8.dfsg-4) ...
Setting up html2text (1.3.2a-15) ...
-Setting up libglib2.0-0 (2.28.6-1) ...
-No schema files found: doing nothing.
Setting up libcroco3 (0.6.2-1) ...
Setting up libunistring0 (0.9.3-4) ...
-Setting up gettext (0.18.1.1-3) ...
+Setting up gettext (0.18.1.1-4) ...
Setting up intltool-debian (0.35.0+20060710.1) ...
Setting up po-debconf (1.0.16+nmu1) ...
-Setting up debhelper (8.1.6) ...
-Setting up cdbs (0.4.94) ...
+Setting up debhelper (8.9.4) ...
+Setting up cdbs (0.4.96) ...
Setting up dpatch (2.0.31) ...
-Setting up libexpat1 (2.0.1-7) ...
-Setting up libfreetype6 (2.4.4-1) ...
-Setting up ttf-dejavu-core (2.33-1) ...
-Setting up fontconfig-config (2.8.0-2.2) ...
-Setting up libfontconfig1 (2.8.0-2.2) ...
-Setting up fontconfig (2.8.0-2.2) ...
-Cleaning up old fontconfig caches... done.
-Regenerating fonts cache... done.
-Setting up libgfortran3 (4.6.0-10) ...
-Setting up gfortran-4.6 (4.6.0-10) ...
-Setting up gfortran (4:4.6.0-5) ...
+Setting up gfortran-4.6 (4.6.1-6) ...
+Setting up gfortran (4:4.6.1-2) ...
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode.
-Setting up libblas3gf (1.2-8) ...
+Setting up libblas3gf (1.2.20110419-2) ...
update-alternatives: using /usr/lib/libblas/libblas.so.3gf to provide /usr/lib/libblas.so.3gf (libblas.so.3gf) in auto mode.
-Setting up libblas-dev (1.2-8) ...
+Setting up libblas-dev (1.2.20110419-2) ...
update-alternatives: using /usr/lib/libblas/libblas.so to provide /usr/lib/libblas.so (libblas.so) in auto mode.
Setting up libbz2-dev (1.0.5-6) ...
-Setting up libpixman-1-0 (0.21.8-1) ...
-Setting up libpng12-0 (1.2.44-2) ...
-Setting up libxau6 (1:1.0.6-1) ...
-Setting up libxdmcp6 (1:1.1.0-1) ...
-Setting up libxcb1 (1.7-2) ...
-Setting up libx11-data (2:1.4.3-1) ...
-Setting up libx11-6 (2:1.4.3-1) ...
-Setting up libxcb-render0 (1.7-2) ...
-Setting up libxcb-shm0 (1.7-2) ...
-Setting up libxrender1 (1:0.9.6-1) ...
-Setting up libcairo2 (1.10.2-6) ...
-Setting up libdatrie1 (0.2.4-2) ...
-Setting up x11-common (1:7.6+6) ...
-All runlevel operations denied by policy
-invoke-rc.d: policy-rc.d denied execution of start.
-Setting up libice6 (2:1.0.7-1) ...
-Setting up libjpeg62 (6b1-1) ...
-Setting up libjpeg62-dev (6b1-1) ...
-Setting up liblapack3gf (3.3.0-4) ...
+Setting up libjpeg62 (6b1-2) ...
+Setting up libjpeg8 (8c-2) ...
+Setting up libjpeg8-dev (8c-2) ...
+Setting up liblapack3gf (3.3.1-1) ...
update-alternatives: using /usr/lib/lapack/liblapack.so.3gf to provide /usr/lib/liblapack.so.3gf (liblapack.so.3gf) in auto mode.
-Setting up liblapack-dev (3.3.0-4) ...
+Setting up liblapack-dev (3.3.1-1) ...
update-alternatives: using /usr/lib/lapack/liblapack.so to provide /usr/lib/liblapack.so (liblapack.so) in auto mode.
Setting up libncurses5-dev (5.9-1) ...
-Setting up libthai-data (0.1.15-1) ...
-Setting up libthai0 (0.1.15-1) ...
-Setting up libxft2 (2.2.0-2) ...
-Setting up libpango1.0-0 (1.28.3-6) ...
Setting up libpaper1 (1.1.24+nmu1) ...
Creating config file /etc/papersize with new version
Setting up libpaper-utils (1.1.24+nmu1) ...
-Setting up libpcrecpp0 (8.12-3) ...
-Setting up libpcre3-dev (8.12-3) ...
+Setting up libpcre3-dev (8.12-4) ...
Setting up zlib1g-dev (1:1.2.3.4.dfsg-3) ...
-Setting up libpng12-dev (1.2.44-2) ...
+Setting up libpng12-dev (1.2.46-3) ...
Setting up libreadline6-dev (6.2-2) ...
Setting up libreadline-dev (6.2-2) ...
-Setting up libsm6 (2:1.2.0-1) ...
Setting up libtiff4 (3.9.5-1) ...
-Setting up libxext6 (2:1.3.0-1) ...
-Setting up libxss1 (1:1.2.1-1) ...
-Setting up libxt6 (1:1.1.1-1) ...
-Setting up zip (3.0-3) ...
-Setting up unzip (6.0-4) ...
+Setting up zip (3.0-4) ...
+Setting up unzip (6.0-5) ...
Setting up xdg-utils (1.1.0~rc1-2) ...
-Setting up tcl8.5 (8.5.9-2) ...
+Setting up tcl8.5 (8.5.10-1) ...
update-alternatives: using /usr/bin/tclsh8.5 to provide /usr/bin/tclsh (tclsh) in auto mode.
-Setting up tk8.5 (8.5.9-2) ...
+Setting up tk8.5 (8.5.10-1) ...
update-alternatives: using /usr/bin/wish8.5 to provide /usr/bin/wish (wish) in auto mode.
-Setting up r-base-core (2.13.0-2) ...
+Setting up r-base-core (2.13.1-1) ...
Setting R_PAPERSIZE_USER default to 'a4'
Creating config file /etc/R/Renviron with new version
-Setting up r-base-dev (2.13.0-2) ...
-Setting up libstdc++6-4.6-dev (4.6.0-10) ...
-Setting up g++-4.6 (4.6.0-10) ...
+Setting up r-base-dev (2.13.1-1) ...
Removing negative dependencies:
Reading package lists...
Building dependency tree...
Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 37 not upgraded.
+0 upgraded, 0 newly installed, 0 to remove and 4 not upgraded.
Checking correctness of dependencies...
Kernel: Linux 2.6.35.4-dsa-octeon mips (mips64)
-Toolchain package versions: binutils_2.21.51.20110421-3 dpkg-dev_1.16.0.2 g++-4.4_4.4.6-2 g++-4.6_4.6.0-10 gcc-4.4_4.4.6-2 gcc-4.6_4.6.0-10 libc6-dev_2.13-2 libstdc++6_4.6.0-10 libstdc++6-4.4-dev_4.4.6-2 libstdc++6-4.6-dev_4.6.0-10 linux-libc-dev_2.6.38-4
-Package versions: apt_0.8.14.1 base-files_6.3 base-passwd_3.5.22 bash_4.1-3 binutils_2.21.51.20110421-3 bsdmainutils_8.2.2 bsdutils_1:2.17.2-9.1 build-essential_11.5 bzip2_1.0.5-6 cdbs_0.4.94 coreutils_8.5-1 cpp_4:4.6.0-5 cpp-4.4_4.4.6-2 cpp-4.6_4.6.0-10 dash_0.5.5.1-7.4 debconf_1.5.39 debconf-english_1.5.38 debfoster_2.7-1.1 debhelper_8.1.6 debian-archive-keyring_2010.08.28 debianutils_3.4.4 diffutils_1:3.0-1 dpatch_2.0.31 dpkg_1.16.0.2 dpkg-dev_1.16.0.2 e2fslibs_1.41.12-2 e2fsprogs_1.41.12-2 fakeroot_1.15.1-1 file_5.04-5+b1 findutils_4.4.2-1+b1 fontconfig_2.8.0-2.2 fontconfig-config_2.8.0-2.2 g++_4:4.6.0-5 g++-4.4_4.4.6-2 g++-4.6_4.6.0-10 gcc_4:4.6.0-5 gcc-4.4_4.4.6-2 gcc-4.4-base_4.4.6-2 gcc-4.5-base_4.5.3-1 gcc-4.6_4.6.0-10 gcc-4.6-base_4.6.0-10 gettext_0.18.1.1-3 gettext-base_0.18.1.1-3 gfortran_4:4.6.0-5 gfortran-4.6_4.6.0-10 gnupg_1.4.11-3 gpgv_1.4.11-3 grep_2.6.3-3 groff-base_1.21-5 gzip_1.3.12-9 hostname_3.06 html2text_1.3.2a-15 initscripts_2.88dsf-13.2 insserv_1.14.0-2.1 intltool-debian_0.35.0+20060710.1 libacl1_2.2.49-4 libattr1_1:2.4.44-2 libblas-dev_1.2-8 libblas3gf_1.2-8 libblkid1_2.17.2-9.1 libbz2-1.0_1.0.5-6 libbz2-dev_1.0.5-6 libc-bin_2.13-2 libc-dev-bin_2.13-2 libc6_2.13-2 libc6-dev_2.13-2 libcairo2_1.10.2-6 libcloog-ppl0_0.15.9-3 libcomerr2_1.41.12-2 libcroco3_0.6.2-1 libdatrie1_0.2.4-2 libdb4.7_4.7.25-18 libdb4.8_4.8.30-7 libdb5.1_5.1.25-10 libdpkg-perl_1.16.0.2 libexpat1_2.0.1-7 libfontconfig1_2.8.0-2.2 libfreetype6_2.4.4-1 libgc1c2_1:7.1-7 libgcc1_1:4.6.0-10 libgdbm3_1.8.3-9 libgfortran3_4.6.0-10 libglib2.0-0_2.28.6-1 libgmp10_2:5.0.1+dfsg-7 libgmpxx4ldbl_2:5.0.1+dfsg-7 libgomp1_4.6.0-10 libice6_2:1.0.7-1 libjpeg62_6b1-1 libjpeg62-dev_6b1-1 liblapack-dev_3.3.0-4 liblapack3gf_3.3.0-4 liblzma2_5.0.0-2 libmagic1_5.04-5+b1 libmpc2_0.9-3 libmpfr4_3.0.1-1 libncurses5_5.9-1 libncurses5-dev_5.9-1 libpam-modules_1.1.2-3 libpam-runtime_1.1.2-3 libpam0g_1.1.2-3 libpango1.0-0_1.28.3-6 libpaper-utils_1.1.24+nmu1 libpaper1_1.1.24+nmu1 libpcre3_8.12-3 libpcre3-dev_8.12-3 libpcrecpp0_8.12-3 libpipeline1_1.2.0-2 libpixman-1-0_0.21.8-1 libpng12-0_1.2.44-2 libpng12-dev_1.2.44-2 libppl-c4_0.11.2-3 libppl9_0.11.2-3 libpwl5_0.11.2-3 libreadline-dev_6.2-2 libreadline6_6.2-2 libreadline6-dev_6.2-2 libselinux1_2.0.98-1 libsepol1_2.0.42-1 libslang2_2.2.4-2 libsm6_2:1.2.0-1 libss2_1.41.12-2 libstdc++6_4.6.0-10 libstdc++6-4.4-dev_4.4.6-2 libstdc++6-4.6-dev_4.6.0-10 libthai-data_0.1.15-1 libthai0_0.1.15-1 libtiff4_3.9.5-1 libtimedate-perl_1.2000-1 libunistring0_0.9.3-4 libusb-0.1-4_2:0.1.12-17 libuuid1_2.17.2-9.1 libx11-6_2:1.4.3-1 libx11-data_2:1.4.3-1 libxau6_1:1.0.6-1 libxcb-render0_1.7-2 libxcb-shm0_1.7-2 libxcb1_1.7-2 libxdmcp6_1:1.1.0-1 libxext6_2:1.3.0-1 libxft2_2.2.0-2 libxml2_2.7.8.dfsg-2+b1 libxrender1_1:0.9.6-1 libxss1_1:1.2.1-1 libxt6_1:1.1.1-1 linux-libc-dev_2.6.38-4 login_1:4.1.4.2+svn3283-3 lsb-base_3.2-27 make_3.81-8.1 man-db_2.6.0.2-1 mawk_1.3.3-15 mount_2.17.2-9.1 ncurses-base_5.9-1 ncurses-bin_5.9-1 passwd_1:4.1.4.2+svn3283-3 patch_2.6.1-1 perl_5.12.3-6 perl-base_5.12.3-6 perl-modules_5.12.3-6 po-debconf_1.0.16+nmu1 r-base-core_2.13.0-2 r-base-dev_2.13.0-2 readline-common_6.2-1 sed_4.2.1-9 sensible-utils_0.0.6 sudo_1.7.4p6-1 sysv-rc_2.88dsf-13.2 sysvinit_2.88dsf-13.2 sysvinit-utils_2.88dsf-13.2 tar_1.25-3 tcl8.5_8.5.9-2 tk8.5_8.5.9-2 ttf-dejavu-core_2.33-1 tzdata_2011g-1 ucf_3.0025+nmu2 unzip_6.0-4 util-linux_2.17.2-9.1 x11-common_1:7.6+6 xdg-utils_1.1.0~rc1-2 xz-utils_5.0.0-2 zip_3.0-3 zlib1g_1:1.2.3.4.dfsg-3 zlib1g-dev_1:1.2.3.4.dfsg-3
+Toolchain package versions: binutils_2.21.52.20110606-2 dpkg-dev_1.16.0.3 g++-4.6_4.6.1-6 gcc-4.6_4.6.1-6 libc6-dev_2.13-16 libstdc++6_4.6.1-6 libstdc++6-4.6-dev_4.6.1-6 linux-libc-dev_3.0.0-1
+Package versions: apt_0.8.15.5 base-files_6.5 base-passwd_3.5.23 bash_4.1-3 binutils_2.21.52.20110606-2 binutils-dev_2.21.52.20110606-2 bsdmainutils_8.2.3 bsdutils_1:2.19.1-5 build-essential_11.5 bzip2_1.0.5-6 cdbs_0.4.96 coreutils_8.5-1 cpp_4:4.6.1-2 cpp-4.6_4.6.1-6 dash_0.5.5.1-7.4 debconf_1.5.41 debfoster_2.7-1.1 debhelper_8.9.4 debian-archive-keyring_2010.08.28 debianutils_4.0.2 diffutils_1:3.0-1 dpatch_2.0.31 dpkg_1.16.0.3 dpkg-dev_1.16.0.3 e2fslibs_1.42~WIP-2011-07-02-1 e2fsprogs_1.42~WIP-2011-07-02-1 fakeroot_1.16-1 file_5.04-5+b1 findutils_4.4.2-1+b1 fontconfig_2.8.0-3 fontconfig-config_2.8.0-3 g++_4:4.6.1-2 g++-4.6_4.6.1-6 gcc_4:4.6.1-2 gcc-4.4-base_4.4.6-7 gcc-4.5-base_4.5.3-4 gcc-4.6_4.6.1-6 gcc-4.6-base_4.6.1-6 gettext_0.18.1.1-4 gettext-base_0.18.1.1-4 gfortran_4:4.6.1-2 gfortran-4.6_4.6.1-6 gnupg_1.4.11-3 gpgv_1.4.11-3 grep_2.9-1 groff-base_1.21-6 gzip_1.4-1 hostname_3.06 html2text_1.3.2a-15 initscripts_2.88dsf-13.11 insserv_1.14.0-2.1 intltool-debian_0.35.0+20060710.1 libacl1_2.2.51-3 libattr1_1:2.4.46-3 libblas-dev_1.2.20110419-2 libblas3gf_1.2.20110419-2 libblkid1_2.19.1-5 libbz2-1.0_1.0.5-6 libbz2-dev_1.0.5-6 libc-bin_2.13-16 libc-dev-bin_2.13-16 libc6_2.13-16 libc6-dev_2.13-16 libcairo2_1.10.2-6.1 libcloog-ppl0_0.15.9-3 libcomerr2_1.42~WIP-2011-07-02-1 libcroco3_0.6.2-1 libdatrie1_0.2.4-3 libdb5.1_5.1.25-11 libdpkg-perl_1.16.0.3 libexpat1_2.0.1-7 libfontconfig1_2.8.0-3 libfreetype6_2.4.6-1 libgc1c2_1:7.1-8 libgcc1_1:4.6.1-6 libgdbm3_1.8.3-10 libgfortran3_4.6.1-6 libglib2.0-0_2.28.6-1 libgmp10_2:5.0.1+dfsg-7 libgmpxx4ldbl_2:5.0.1+dfsg-7 libgomp1_4.6.1-6 libice6_2:1.0.7-2 libjpeg62_6b1-2 libjpeg8_8c-2 libjpeg8-dev_8c-2 liblapack-dev_3.3.1-1 liblapack3gf_3.3.1-1 liblzma2_5.0.0-2 libmagic1_5.04-5+b1 libmount1_2.19.1-5 libmpc2_0.9-3 libmpfr4_3.0.1-5 libncurses5_5.9-1 libncurses5-dev_5.9-1 libpam-modules_1.1.3-2 libpam-modules-bin_1.1.3-2 libpam-runtime_1.1.3-2 libpam0g_1.1.3-2 libpango1.0-0_1.28.4-2 libpaper-utils_1.1.24+nmu1 libpaper1_1.1.24+nmu1 libpcre3_8.12-4 libpcre3-dev_8.12-4 libpcrecpp0_8.12-4 libpipeline1_1.2.0-3 libpixman-1-0_0.22.2-1 libpng12-0_1.2.46-3 libpng12-dev_1.2.46-3 libppl-c4_0.11.2-4 libppl9_0.11.2-4 libpwl5_0.11.2-4 libreadline-dev_6.2-2 libreadline6_6.2-2 libreadline6-dev_6.2-2 libselinux1_2.0.98-1.1 libsepol1_2.0.42-1 libslang2_2.2.4-2 libsm6_2:1.2.0-2 libss2_1.42~WIP-2011-07-02-1 libstdc++6_4.6.1-6 libstdc++6-4.6-dev_4.6.1-6 libthai-data_0.1.15-2 libthai0_0.1.15-2 libtiff4_3.9.5-1 libtimedate-perl_1.2000-1 libunistring0_0.9.3-4 libusb-0.1-4_2:0.1.12-18 libuuid1_2.19.1-5 libx11-6_2:1.4.4-1 libx11-data_2:1.4.4-1 libxau6_1:1.0.6-3 libxcb-render0_1.7-3 libxcb-shm0_1.7-3 libxcb1_1.7-3 libxdmcp6_1:1.1.0-3 libxext6_2:1.3.0-3 libxft2_2.2.0-3 libxml2_2.7.8.dfsg-4 libxrender1_1:0.9.6-2 libxss1_1:1.2.1-2 libxt6_1:1.1.1-2 linux-libc-dev_3.0.0-1 login_1:4.1.4.2+svn3283-3 lsb-base_3.2-27 make_3.81-8.1 man-db_2.6.0.2-2 mawk_1.3.3-15 mount_2.19.1-5 multiarch-support_2.13-16 ncurses-base_5.9-1 ncurses-bin_5.9-1 passwd_1:4.1.4.2+svn3283-3 patch_2.6.1-2 perl_5.12.4-4 perl-base_5.12.4-4 perl-modules_5.12.4-4 po-debconf_1.0.16+nmu1 r-base-core_2.13.1-1 r-base-dev_2.13.1-1 readline-common_6.2-2 sed_4.2.1-9 sensible-utils_0.0.6 sudo_1.7.4p6-1 sysv-rc_2.88dsf-13.11 sysvinit_2.88dsf-13.11 sysvinit-utils_2.88dsf-13.11 tar_1.25-3 tcl8.5_8.5.10-1 tk8.5_8.5.10-1 ttf-dejavu-core_2.33-1 tzdata_2011h-3 ucf_3.0025+nmu2 unzip_6.0-5 util-linux_2.19.1-5 x11-common_1:7.6+7 xdg-utils_1.1.0~rc1-2 xz-utils_5.0.0-2 zip_3.0-4 zlib1g_1:1.2.3.4.dfsg-3 zlib1g-dev_1:1.2.3.4.dfsg-3
┌──────────────────────────────────────────────────────────────────────────────┐
│ Build │
@@ -588,14 +546,13 @@ Package versions: apt_0.8.14.1 base-files_6.3 base-passwd_3.5.22 bash_4.1-3 binu
Unpack source
─────────────
-Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/Source/Package.pm line 258.
gpgv: keyblock resource `/home/buildd2/.gnupg/trustedkeys.gpg': file open error
-gpgv: Signature made Thu Jun 2 04:18:41 2011 UTC using RSA key ID 2295D502
+gpgv: Signature made Sun Aug 14 11:36:35 2011 UTC using RSA key ID 2295D502
gpgv: Can't check signature: public key not found
-dpkg-source: warning: failed to verify signature on ./r-bioc-limma_3.8.2-1.dsc
-dpkg-source: info: extracting r-bioc-limma in r-bioc-limma-3.8.2
-dpkg-source: info: unpacking r-bioc-limma_3.8.2.orig.tar.gz
-dpkg-source: info: applying r-bioc-limma_3.8.2-1.diff.gz
+dpkg-source: warning: failed to verify signature on ./r-bioc-limma_3.8.3-1.dsc
+dpkg-source: info: extracting r-bioc-limma in r-bioc-limma-3.8.3
+dpkg-source: info: unpacking r-bioc-limma_3.8.3.orig.tar.gz
+dpkg-source: info: applying r-bioc-limma_3.8.3-1.diff.gz
Check disc space
────────────────
@@ -604,33 +561,24 @@ Check disc space
dpkg-buildpackage
─────────────────
-Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
dpkg-buildpackage: export CFLAGS from dpkg-buildflags (origin: vendor): -g -O2
dpkg-buildpackage: export CPPFLAGS from dpkg-buildflags (origin: vendor):
dpkg-buildpackage: export CXXFLAGS from dpkg-buildflags (origin: vendor): -g -O2
dpkg-buildpackage: export FFLAGS from dpkg-buildflags (origin: vendor): -g -O2
dpkg-buildpackage: export LDFLAGS from dpkg-buildflags (origin: vendor):
dpkg-buildpackage: source package r-bioc-limma
-dpkg-buildpackage: source version 3.8.2-1
- dpkg-source --before-build r-bioc-limma-3.8.2
+dpkg-buildpackage: source version 3.8.3-1
+ dpkg-source --before-build r-bioc-limma-3.8.3
dpkg-buildpackage: host architecture mips
fakeroot debian/rules clean
-Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
-Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
-Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
-Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
test -x debian/rules
dh_testroot
/usr/bin/make -f debian/rules reverse-config
-Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
-Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
-Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
-Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
-make[1]: Entering directory `/build/buildd2-r-bioc-limma_3.8.2-1-mips-kUhbdR/r-bioc-limma-3.8.2'
+make[1]: Entering directory `/build/buildd2-r-bioc-limma_3.8.3-1-mips-Ko3i64/r-bioc-limma-3.8.3'
make[1]: Nothing to be done for `reverse-config'.
-make[1]: Leaving directory `/build/buildd2-r-bioc-limma_3.8.2-1-mips-kUhbdR/r-bioc-limma-3.8.2'
+make[1]: Leaving directory `/build/buildd2-r-bioc-limma_3.8.3-1-mips-Ko3i64/r-bioc-limma-3.8.3'
if [ "reverse-patches" = "reverse-patches" ]; then rm -f debian/stamp-patched; fi
patches:
if [ "reverse-patches" != "reverse-patches" ]; then touch debian/stamp-patched; fi
@@ -647,41 +595,25 @@ if test -d src; then \
fi
rm -f config.log config.status
debian/rules build
-Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
-Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
-Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
-Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
test -x debian/rules
mkdir -p "."
/usr/bin/make -f debian/rules reverse-config
-Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
-Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
-Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
-Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
-make[1]: Entering directory `/build/buildd2-r-bioc-limma_3.8.2-1-mips-kUhbdR/r-bioc-limma-3.8.2'
+make[1]: Entering directory `/build/buildd2-r-bioc-limma_3.8.3-1-mips-Ko3i64/r-bioc-limma-3.8.3'
make[1]: Nothing to be done for `reverse-config'.
-make[1]: Leaving directory `/build/buildd2-r-bioc-limma_3.8.2-1-mips-kUhbdR/r-bioc-limma-3.8.2'
+make[1]: Leaving directory `/build/buildd2-r-bioc-limma_3.8.3-1-mips-Ko3i64/r-bioc-limma-3.8.3'
if [ "debian/stamp-patched" = "reverse-patches" ]; then rm -f debian/stamp-patched; fi
patches:
if [ "debian/stamp-patched" != "reverse-patches" ]; then touch debian/stamp-patched; fi
if [ "debian/stamp-patched" != "reverse-patches" ] ; then \
/usr/bin/make -f debian/rules update-config ; \
fi
-Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
-Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
-Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
-Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
-make[1]: Entering directory `/build/buildd2-r-bioc-limma_3.8.2-1-mips-kUhbdR/r-bioc-limma-3.8.2'
+make[1]: Entering directory `/build/buildd2-r-bioc-limma_3.8.3-1-mips-Ko3i64/r-bioc-limma-3.8.3'
make[1]: Nothing to be done for `update-config'.
-make[1]: Leaving directory `/build/buildd2-r-bioc-limma_3.8.2-1-mips-kUhbdR/r-bioc-limma-3.8.2'
+make[1]: Leaving directory `/build/buildd2-r-bioc-limma_3.8.3-1-mips-Ko3i64/r-bioc-limma-3.8.3'
fakeroot debian/rules binary-arch
-Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
-Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
-Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
-Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
test -x debian/rules
dh_testroot
@@ -690,24 +622,24 @@ dh_installdirs -A
mkdir -p "."
dh_installdirs usr/lib/R/site-library
if test -f /usr/bin/xvfb-run; then \
- xvfb-run \
- R CMD INSTALL -l /build/buildd2-r-bioc-limma_3.8.2-1-mips-kUhbdR/r-bioc-limma-3.8.2/debian/r-bioc-limma/usr/lib/R/site-library --clean \
+ xvfb-run -a \
+ R CMD INSTALL -l /build/buildd2-r-bioc-limma_3.8.3-1-mips-Ko3i64/r-bioc-limma-3.8.3/debian/r-bioc-limma/usr/lib/R/site-library --clean \
. ; \
else \
- R CMD INSTALL -l /build/buildd2-r-bioc-limma_3.8.2-1-mips-kUhbdR/r-bioc-limma-3.8.2/debian/r-bioc-limma/usr/lib/R/site-library \
+ R CMD INSTALL -l /build/buildd2-r-bioc-limma_3.8.3-1-mips-Ko3i64/r-bioc-limma-3.8.3/debian/r-bioc-limma/usr/lib/R/site-library \
--clean . ;\
fi
* installing *source* package 'limma' ...
** libs
-make[1]: Entering directory `/build/buildd2-r-bioc-limma_3.8.2-1-mips-kUhbdR/r-bioc-limma-3.8.2/src'
+make[1]: Entering directory `/build/buildd2-r-bioc-limma_3.8.3-1-mips-Ko3i64/r-bioc-limma-3.8.3/src'
gcc -I/usr/share/R/include -fpic -std=gnu99 -g0 -g -c normexp.c -o normexp.o
normexp.c: In function 'fit_saddle_nelder_mead':
normexp.c:153:3: warning: floating constant exceeds range of 'double' [-Woverflow]
gcc -shared -o limma.so normexp.o -L/usr/lib/R/lib -lR
-make[1]: Leaving directory `/build/buildd2-r-bioc-limma_3.8.2-1-mips-kUhbdR/r-bioc-limma-3.8.2/src'
-make[1]: Entering directory `/build/buildd2-r-bioc-limma_3.8.2-1-mips-kUhbdR/r-bioc-limma-3.8.2/src'
-make[1]: Leaving directory `/build/buildd2-r-bioc-limma_3.8.2-1-mips-kUhbdR/r-bioc-limma-3.8.2/src'
-installing to /build/buildd2-r-bioc-limma_3.8.2-1-mips-kUhbdR/r-bioc-limma-3.8.2/debian/r-bioc-limma/usr/lib/R/site-library/limma/libs
+make[1]: Leaving directory `/build/buildd2-r-bioc-limma_3.8.3-1-mips-Ko3i64/r-bioc-limma-3.8.3/src'
+make[1]: Entering directory `/build/buildd2-r-bioc-limma_3.8.3-1-mips-Ko3i64/r-bioc-limma-3.8.3/src'
+make[1]: Leaving directory `/build/buildd2-r-bioc-limma_3.8.3-1-mips-Ko3i64/r-bioc-limma-3.8.3/src'
+installing to /build/buildd2-r-bioc-limma_3.8.3-1-mips-Ko3i64/r-bioc-limma-3.8.3/debian/r-bioc-limma/usr/lib/R/site-library/limma/libs
** R
** inst
** preparing package for lazy loading
@@ -717,17 +649,17 @@ installing to /build/buildd2-r-bioc-limma_3.8.2-1-mips-kUhbdR/r-bioc-limma-3.8.2
** testing if installed package can be loaded
* DONE (limma)
-rm -vf /build/buildd2-r-bioc-limma_3.8.2-1-mips-kUhbdR/r-bioc-limma-3.8.2/debian/r-bioc-limma/usr/lib/R/site-library/R.css \
- /build/buildd2-r-bioc-limma_3.8.2-1-mips-kUhbdR/r-bioc-limma-3.8.2/debian/r-bioc-limma/usr/lib/R/site-library/limma/COPYING \
- /build/buildd2-r-bioc-limma_3.8.2-1-mips-kUhbdR/r-bioc-limma-3.8.2/debian/r-bioc-limma/usr/lib/R/site-library/limma/LICENSE.txt
+rm -vf /build/buildd2-r-bioc-limma_3.8.3-1-mips-Ko3i64/r-bioc-limma-3.8.3/debian/r-bioc-limma/usr/lib/R/site-library/R.css \
+ /build/buildd2-r-bioc-limma_3.8.3-1-mips-Ko3i64/r-bioc-limma-3.8.3/debian/r-bioc-limma/usr/lib/R/site-library/limma/COPYING \
+ /build/buildd2-r-bioc-limma_3.8.3-1-mips-Ko3i64/r-bioc-limma-3.8.3/debian/r-bioc-limma/usr/lib/R/site-library/limma/LICENSE.txt
if test -f debian/overrides; then \
- install -d /build/buildd2-r-bioc-limma_3.8.2-1-mips-kUhbdR/r-bioc-limma-3.8.2/debian/r-bioc-limma/usr/share/lintian/overrides ; \
+ install -d /build/buildd2-r-bioc-limma_3.8.3-1-mips-Ko3i64/r-bioc-limma-3.8.3/debian/r-bioc-limma/usr/share/lintian/overrides ; \
install -m 0644 debian/overrides \
- /build/buildd2-r-bioc-limma_3.8.2-1-mips-kUhbdR/r-bioc-limma-3.8.2/debian/r-bioc-limma/usr/share/lintian/overrides/r-bioc-limma; \
+ /build/buildd2-r-bioc-limma_3.8.3-1-mips-Ko3i64/r-bioc-limma-3.8.3/debian/r-bioc-limma/usr/share/lintian/overrides/r-bioc-limma; \
fi
Adding cdbs dependencies to debian/r-bioc-limma.substvars
dh_installdirs -pr-bioc-limma
-echo "R:Depends=r-base-core (>= 2.13.0~)" >> debian/r-bioc-limma.substvars
+echo "R:Depends=r-base-core (>= 2.13.1~)" >> debian/r-bioc-limma.substvars
dh_installdocs -pr-bioc-limma
dh_installexamples -pr-bioc-limma
dh_installman -pr-bioc-limma
@@ -759,58 +691,58 @@ dh_shlibdeps -pr-bioc-limma
dh_gencontrol -pr-bioc-limma
dh_md5sums -pr-bioc-limma
dh_builddeb -pr-bioc-limma
-dpkg-deb: building package `r-bioc-limma' in `../r-bioc-limma_3.8.2-1_mips.deb'.
- dpkg-genchanges -B -mmips Build Daemon (lucatelli) <buildd_mips-lucatelli2 at buildd.debian.org> >../r-bioc-limma_3.8.2-1_mips.changes
+dpkg-deb: building package `r-bioc-limma' in `../r-bioc-limma_3.8.3-1_mips.deb'.
+ dpkg-genchanges -B -mmips Build Daemon (lucatelli) <buildd_mips-lucatelli2 at buildd.debian.org> >../r-bioc-limma_3.8.3-1_mips.changes
dpkg-genchanges: arch-specific upload - not including arch-independent packages
dpkg-genchanges: binary-only upload - not including any source code
- dpkg-source --after-build r-bioc-limma-3.8.2
+ dpkg-source --after-build r-bioc-limma-3.8.3
dpkg-buildpackage: binary only upload (no source included)
────────────────────────────────────────────────────────────────────────────────
-Build finished at 20110602-1337
+Build finished at 20110814-1223
-r-bioc-limma_3.8.2-1_mips.changes:
+r-bioc-limma_3.8.3-1_mips.changes:
Format: 1.8
-Date: Thu, 02 Jun 2011 13:07:58 +0900
+Date: Sun, 14 Aug 2011 20:30:21 +0900
Source: r-bioc-limma
Binary: r-bioc-limma
Architecture: mips
-Version: 3.8.2-1
+Version: 3.8.3-1
Distribution: sid
Urgency: low
Maintainer: mips Build Daemon (lucatelli) <buildd_mips-lucatelli2 at buildd.debian.org>
Changed-By: Charles Plessy <plessy at debian.org>
Description:
r-bioc-limma - linear models for microarray data
-Closes: 628548
Changes:
- r-bioc-limma (3.8.2-1) unstable; urgency=low
+ r-bioc-limma (3.8.3-1) unstable; urgency=low
.
- * Initial release (closes: #628548).
+ * New upstream release.
+ * [e891bb6b] Corrected VCS-Git url.
Checksums-Sha1:
- 9afc58723301c16837ae2d50792ba4655dd6fe26 1398086 r-bioc-limma_3.8.2-1_mips.deb
+ 5cf5dd87498c6aaa90ea4d5fc0bd8a76d76bf19a 1398876 r-bioc-limma_3.8.3-1_mips.deb
Checksums-Sha256:
- 35e4996be50a11653335e71f3d52d7e6453dfea32f360d714a69be47f8e0f8d0 1398086 r-bioc-limma_3.8.2-1_mips.deb
+ 04d496354b1c37ba9ac6d9c2091b154b0a781ba1984026bc14f1e021760aeff8 1398876 r-bioc-limma_3.8.3-1_mips.deb
Files:
- df367a958cf2793778c83f3bd3fdafb6 1398086 gnu-r optional r-bioc-limma_3.8.2-1_mips.deb
+ d24fb1d53545f5f12d8449e9c7ba6433 1398876 gnu-r optional r-bioc-limma_3.8.3-1_mips.deb
┌──────────────────────────────────────────────────────────────────────────────┐
│ Package contents │
└──────────────────────────────────────────────────────────────────────────────┘
-r-bioc-limma_3.8.2-1_mips.deb
+r-bioc-limma_3.8.3-1_mips.deb
─────────────────────────────
new debian package, version 2.0.
- size 1398086 bytes: control archive= 1511 bytes.
+ size 1398876 bytes: control archive= 1509 bytes.
766 bytes, 16 lines control
2226 bytes, 29 lines md5sums
Package: r-bioc-limma
- Version: 3.8.2-1
+ Version: 3.8.3-1
Architecture: mips
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
Installed-Size: 1676
- Depends: libc6 (>= 2.2), r-base-core (>= 2.13.0~)
+ Depends: libc6 (>= 2.2), r-base-core (>= 2.13.1~)
Section: gnu-r
Priority: optional
Homepage: http://bioinf.wehi.edu.au/limma/
@@ -822,50 +754,50 @@ r-bioc-limma_3.8.2-1_mips.deb
apply to all array platforms and treat Affymetrix, single channel and two
channel experiments in a unified way.
-drwxr-xr-x root/root 0 2011-06-02 13:36 ./
-drwxr-xr-x root/root 0 2011-06-02 13:36 ./usr/
-drwxr-xr-x root/root 0 2011-06-02 13:34 ./usr/lib/
-drwxr-xr-x root/root 0 2011-06-02 13:34 ./usr/lib/R/
-drwxr-xr-x root/root 0 2011-06-02 13:36 ./usr/lib/R/site-library/
-drwxr-xr-x root/root 0 2011-06-02 13:36 ./usr/lib/R/site-library/limma/
--rw-r--r-- root/root 1872 2011-06-02 13:34 ./usr/lib/R/site-library/limma/NAMESPACE
--rwxr-xr-x root/root 1230 2011-06-02 13:35 ./usr/lib/R/site-library/limma/CITATION
-drwxr-xr-x root/root 0 2011-06-02 13:35 ./usr/lib/R/site-library/limma/R/
--rw-r--r-- root/root 3737 2011-06-02 13:35 ./usr/lib/R/site-library/limma/R/limma.rdx
--rw-r--r-- root/root 384 2011-06-02 13:35 ./usr/lib/R/site-library/limma/R/limma
--rw-r--r-- root/root 172729 2011-06-02 13:35 ./usr/lib/R/site-library/limma/R/limma.rdb
-drwxr-xr-x root/root 0 2011-06-02 13:36 ./usr/lib/R/site-library/limma/help/
--rw-r--r-- root/root 6150 2011-06-02 13:36 ./usr/lib/R/site-library/limma/help/AnIndex
--rw-r--r-- root/root 3241 2011-06-02 13:35 ./usr/lib/R/site-library/limma/help/limma.rdx
--rw-r--r-- root/root 2361 2011-06-02 13:36 ./usr/lib/R/site-library/limma/help/aliases.rds
--rw-r--r-- root/root 1342 2011-06-02 13:35 ./usr/lib/R/site-library/limma/help/paths.rds
--rw-r--r-- root/root 449874 2011-06-02 13:35 ./usr/lib/R/site-library/limma/help/limma.rdb
-drwxr-xr-x root/root 0 2011-06-02 13:36 ./usr/lib/R/site-library/limma/html/
--rw-r--r-- root/root 1179 2011-06-02 13:36 ./usr/lib/R/site-library/limma/html/R.css
--rw-r--r-- root/root 34039 2011-06-02 13:36 ./usr/lib/R/site-library/limma/html/00Index.html
--rw-r--r-- root/root 1008 2011-06-02 13:34 ./usr/lib/R/site-library/limma/DESCRIPTION
-drwxr-xr-x root/root 0 2011-06-02 13:36 ./usr/lib/R/site-library/limma/doc/
--rw-r--r-- root/root 687780 2011-06-02 13:35 ./usr/lib/R/site-library/limma/doc/usersguide.pdf
--rwxr-xr-x root/root 673 2011-06-02 13:35 ./usr/lib/R/site-library/limma/doc/index.html
--rw-r--r-- root/root 45616 2011-06-02 13:35 ./usr/lib/R/site-library/limma/doc/limma.pdf
--rwxr-xr-x root/root 84633 2011-06-02 13:35 ./usr/lib/R/site-library/limma/doc/changelog.txt
--rwxr-xr-x root/root 1711 2011-06-02 13:35 ./usr/lib/R/site-library/limma/doc/limma.Rnw
-drwxr-xr-x root/root 0 2011-06-02 13:37 ./usr/lib/R/site-library/limma/libs/
--rw-r--r-- root/root 10704 2011-06-02 13:37 ./usr/lib/R/site-library/limma/libs/limma.so
--rw-r--r-- root/root 9360 2011-06-02 13:36 ./usr/lib/R/site-library/limma/INDEX
-drwxr-xr-x root/root 0 2011-06-02 13:36 ./usr/lib/R/site-library/limma/Meta/
--rw-r--r-- root/root 2853 2011-06-02 13:36 ./usr/lib/R/site-library/limma/Meta/links.rds
--rw-r--r-- root/root 217 2011-06-02 13:36 ./usr/lib/R/site-library/limma/Meta/vignette.rds
--rw-r--r-- root/root 1052 2011-06-02 13:34 ./usr/lib/R/site-library/limma/Meta/package.rds
--rw-r--r-- root/root 503 2011-06-02 13:36 ./usr/lib/R/site-library/limma/Meta/nsInfo.rds
--rw-r--r-- root/root 5522 2011-06-02 13:36 ./usr/lib/R/site-library/limma/Meta/hsearch.rds
--rw-r--r-- root/root 5946 2011-06-02 13:36 ./usr/lib/R/site-library/limma/Meta/Rd.rds
-drwxr-xr-x root/root 0 2011-06-02 13:36 ./usr/share/
-drwxr-xr-x root/root 0 2011-06-02 13:36 ./usr/share/doc/
-drwxr-xr-x root/root 0 2011-06-02 13:37 ./usr/share/doc/r-bioc-limma/
--rw-r--r-- root/root 161 2011-06-02 13:33 ./usr/share/doc/r-bioc-limma/changelog.Debian.gz
--rw-r--r-- root/root 25983 2011-05-20 04:14 ./usr/share/doc/r-bioc-limma/changelog.gz
--rw-r--r-- root/root 2116 2011-06-02 13:33 ./usr/share/doc/r-bioc-limma/copyright
+drwxr-xr-x root/root 0 2011-08-14 12:22 ./
+drwxr-xr-x root/root 0 2011-08-14 12:22 ./usr/
+drwxr-xr-x root/root 0 2011-08-14 12:20 ./usr/lib/
+drwxr-xr-x root/root 0 2011-08-14 12:20 ./usr/lib/R/
+drwxr-xr-x root/root 0 2011-08-14 12:22 ./usr/lib/R/site-library/
+drwxr-xr-x root/root 0 2011-08-14 12:22 ./usr/lib/R/site-library/limma/
+-rw-r--r-- root/root 1872 2011-08-14 12:20 ./usr/lib/R/site-library/limma/NAMESPACE
+-rwxr-xr-x root/root 1230 2011-08-14 12:21 ./usr/lib/R/site-library/limma/CITATION
+drwxr-xr-x root/root 0 2011-08-14 12:21 ./usr/lib/R/site-library/limma/R/
+-rw-r--r-- root/root 3734 2011-08-14 12:21 ./usr/lib/R/site-library/limma/R/limma.rdx
+-rw-r--r-- root/root 384 2011-08-14 12:21 ./usr/lib/R/site-library/limma/R/limma
+-rw-r--r-- root/root 173273 2011-08-14 12:21 ./usr/lib/R/site-library/limma/R/limma.rdb
+drwxr-xr-x root/root 0 2011-08-14 12:22 ./usr/lib/R/site-library/limma/help/
+-rw-r--r-- root/root 6150 2011-08-14 12:22 ./usr/lib/R/site-library/limma/help/AnIndex
+-rw-r--r-- root/root 3267 2011-08-14 12:21 ./usr/lib/R/site-library/limma/help/limma.rdx
+-rw-r--r-- root/root 2363 2011-08-14 12:22 ./usr/lib/R/site-library/limma/help/aliases.rds
+-rw-r--r-- root/root 1345 2011-08-14 12:21 ./usr/lib/R/site-library/limma/help/paths.rds
+-rw-r--r-- root/root 450214 2011-08-14 12:21 ./usr/lib/R/site-library/limma/help/limma.rdb
+drwxr-xr-x root/root 0 2011-08-14 12:22 ./usr/lib/R/site-library/limma/html/
+-rw-r--r-- root/root 1179 2011-08-14 12:22 ./usr/lib/R/site-library/limma/html/R.css
+-rw-r--r-- root/root 34039 2011-08-14 12:22 ./usr/lib/R/site-library/limma/html/00Index.html
+-rw-r--r-- root/root 1008 2011-08-14 12:20 ./usr/lib/R/site-library/limma/DESCRIPTION
+drwxr-xr-x root/root 0 2011-08-14 12:22 ./usr/lib/R/site-library/limma/doc/
+-rw-r--r-- root/root 687780 2011-08-14 12:21 ./usr/lib/R/site-library/limma/doc/usersguide.pdf
+-rwxr-xr-x root/root 673 2011-08-14 12:21 ./usr/lib/R/site-library/limma/doc/index.html
+-rw-r--r-- root/root 45616 2011-08-14 12:21 ./usr/lib/R/site-library/limma/doc/limma.pdf
+-rwxr-xr-x root/root 84899 2011-08-14 12:21 ./usr/lib/R/site-library/limma/doc/changelog.txt
+-rwxr-xr-x root/root 1711 2011-08-14 12:21 ./usr/lib/R/site-library/limma/doc/limma.Rnw
+drwxr-xr-x root/root 0 2011-08-14 12:23 ./usr/lib/R/site-library/limma/libs/
+-rw-r--r-- root/root 10704 2011-08-14 12:23 ./usr/lib/R/site-library/limma/libs/limma.so
+-rw-r--r-- root/root 9360 2011-08-14 12:22 ./usr/lib/R/site-library/limma/INDEX
+drwxr-xr-x root/root 0 2011-08-14 12:22 ./usr/lib/R/site-library/limma/Meta/
+-rw-r--r-- root/root 2854 2011-08-14 12:22 ./usr/lib/R/site-library/limma/Meta/links.rds
+-rw-r--r-- root/root 217 2011-08-14 12:22 ./usr/lib/R/site-library/limma/Meta/vignette.rds
+-rw-r--r-- root/root 1053 2011-08-14 12:20 ./usr/lib/R/site-library/limma/Meta/package.rds
+-rw-r--r-- root/root 505 2011-08-14 12:22 ./usr/lib/R/site-library/limma/Meta/nsInfo.rds
+-rw-r--r-- root/root 5524 2011-08-14 12:22 ./usr/lib/R/site-library/limma/Meta/hsearch.rds
+-rw-r--r-- root/root 5947 2011-08-14 12:22 ./usr/lib/R/site-library/limma/Meta/Rd.rds
+drwxr-xr-x root/root 0 2011-08-14 12:22 ./usr/share/
+drwxr-xr-x root/root 0 2011-08-14 12:22 ./usr/share/doc/
+drwxr-xr-x root/root 0 2011-08-14 12:23 ./usr/share/doc/r-bioc-limma/
+-rw-r--r-- root/root 234 2011-08-14 12:19 ./usr/share/doc/r-bioc-limma/changelog.Debian.gz
+-rw-r--r-- root/root 26050 2011-08-08 16:14 ./usr/share/doc/r-bioc-limma/changelog.gz
+-rw-r--r-- root/root 2117 2011-08-14 12:19 ./usr/share/doc/r-bioc-limma/copyright
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -879,7 +811,7 @@ Built successfully
│ Post Build │
└──────────────────────────────────────────────────────────────────────────────┘
-Purging /var/lib/schroot/mount/sid-mips-sbuild-ca6613af-65d7-485e-a5f2-5924db2262d8/build/buildd2-r-bioc-limma_3.8.2-1-mips-kUhbdR
+Purging /var/lib/schroot/mount/sid-mips-sbuild-aad2c9e9-f15f-4d76-9af3-bda365a301c9/build/buildd2-r-bioc-limma_3.8.3-1-mips-Ko3i64
Not cleaning session: cloned chroot in use
Can't open average time db /var/lib/sbuild/avg-build-times
Can't open average space db /var/lib/sbuild/avg-build-space
@@ -892,80 +824,78 @@ Architecture: mips
Build-Space: 5080
Build-Time: 231
Distribution: sid
-Install-Time: 229
-Job: r-bioc-limma_3.8.2-1
+Install-Time: 190
+Job: r-bioc-limma_3.8.3-1
Package: r-bioc-limma
-Package-Time: 580
-Source-Version: 3.8.2-1
+Package-Time: 539
+Source-Version: 3.8.3-1
Space: 5080
Status: successful
-Version: 3.8.2-1
+Version: 3.8.3-1
────────────────────────────────────────────────────────────────────────────────
-Finished at 20110602-1337
-Build needed 00:09:40, 5080k disc space
-Signature with key 'F4C69470' requested:
-
-From buildd at mayer.debian.org Thu Jun 02 14:57:18 2011
-Return-path: <buildd at mayer.debian.org>
-Received: from merikanto.debian.org ([2001:858:2:2:216:35ff:fec4:a49a])
- from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
- CN=merikanto.debian.org,
- EMAIL=hostmaster at merikanto.debian.org (verified)
+Finished at 20110814-1223
+Build needed 00:08:59, 5080k disc space
+Signature with key 'FDFDA76A' requested:
+
+From buildd at monteverdi.ayous.org Sun Aug 14 12:48:59 2011
+Return-path: <buildd at monteverdi.ayous.org>
+Received: from monteverdi.ayous.org ([2001:a60:f006:deb:20a:1ff:fe00:987]
+ helo=alius.ayous.org)
by grieg.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
- (Exim 4.72) (envelope-from <buildd at mayer.debian.org>)
- id 1QS9Kn-0002UQ-ND
- for logs at buildd.debian.org; Thu, 02 Jun 2011 14:57:18 +0000
-Received: from mayer.debian.org ([140.211.166.78])
- from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
- CN=mayer.debian.org, EMAIL=hostmaster at mayer.debian.org (verified)
- by merikanto.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
- (Exim 4.72) (envelope-from <buildd at mayer.debian.org>)
- id 1QS9Kl-00019k-K8
- for logs at buildd.debian.org; Thu, 02 Jun 2011 14:57:16 +0000
-Received: from buildd by mayer.debian.org with local (Exim 4.69)
- (envelope-from <buildd at mayer.debian.org>) id 1QS9Ki-0004MO-B1
- for logs at buildd.debian.org; Thu, 02 Jun 2011 14:57:12 +0000
-From: buildd on mayer <buildd at mayer.debian.org>
-To: logs at buildd.debian.org
-Subject: Log for successful build of r-bioc-limma_3.8.2-1 on mipsel (dist=sid)
+ (Exim 4.72) (envelope-from <buildd at monteverdi.ayous.org>)
+ id 1Qsa7N-0002GC-Hd
+ for logs at buildd.debian.org; Sun, 14 Aug 2011 12:48:59 +0000
+Received: from buildd by monteverdi.ayous.org with local (Exim 4.72)
+ (envelope-from <buildd at monteverdi.ayous.org>)
+ id 1QsZj9-0000UK-II; Sun, 14 Aug 2011 12:23:39 +0000
+Date: Sun, 14 Aug 2011 12:23:39 +0000
+Message-Id: <E1QsZj9-0000UK-II at monteverdi.ayous.org>
+From: buildd on monteverdi <buildd at monteverdi.ayous.org>
+To: aba+buildd_monteverdi at not.so.argh.org,logs at buildd.debian.org
+Subject: Log for successful build of r-bioc-limma_3.8.3-1 on mipsel (dist=sid)
Content-Type: text/plain; charset=UTF-8
Content-Transfer-Encoding: 8bit
-Message-Id: <E1QS9Ki-0004MO-B1 at mayer.debian.org>
-Date: Thu, 02 Jun 2011 14:57:12 +0000
Delivered-To: logs at buildd.debian.org
-sbuild (Debian sbuild) 0.61.0 (23 Feb 2011) on mayer.debian.org
+sbuild (Debian sbuild) 0.61.0 (23 Feb 2011) on monteverdi.ayous.org
╔══════════════════════════════════════════════════════════════════════════════╗
-║ r-bioc-limma 3.8.2-1 (mipsel) 02 Jun 2011 14:52 ║
+║ r-bioc-limma 3.8.3-1 (mipsel) 14 Aug 2011 12:13 ║
╚══════════════════════════════════════════════════════════════════════════════╝
Package: r-bioc-limma
-Version: 3.8.2-1
-Source Version: 3.8.2-1
+Version: 3.8.3-1
+Source Version: 3.8.3-1
Architecture: mipsel
-Hit http://debian.oregonstate.edu sid InRelease
-Hit http://debian.oregonstate.edu sid/main Sources
-Hit http://debian.oregonstate.edu sid/contrib Sources
-Hit http://debian.oregonstate.edu sid/main mipsel Packages
-Hit http://debian.oregonstate.edu sid/contrib mipsel Packages
-Ign http://debian.oregonstate.edu sid/contrib TranslationIndex
-Hit http://debian.oregonstate.edu sid/main TranslationIndex
-Ign http://debian.oregonstate.edu sid/contrib Translation-en
-Hit http://incoming.debian.org sid InRelease
+Ign http://incoming.debian.org unstable InRelease
Ign http://incoming.debian.org InRelease
-Hit http://incoming.debian.org Release.gpg
-Hit http://incoming.debian.org sid/main Sources
-Hit http://incoming.debian.org sid/contrib Sources
-Hit http://incoming.debian.org sid/main mipsel Packages
-Hit http://incoming.debian.org sid/contrib mipsel Packages
-Ign http://incoming.debian.org sid/contrib TranslationIndex
-Hit http://incoming.debian.org sid/main TranslationIndex
-Hit http://incoming.debian.org Release
-Hit http://incoming.debian.org Sources
-Hit http://incoming.debian.org Packages
-Ign http://incoming.debian.org sid/contrib Translation-en
+Ign http://mirror.ayous.org unstable InRelease
+Get:1 http://incoming.debian.org unstable Release.gpg [836 B]
+Get:2 http://mirror.ayous.org unstable Release.gpg [836 B]
+Get:3 http://mirror.ayous.org unstable Release [145 kB]
+Get:4 http://incoming.debian.org Release.gpg [836 B]
+Get:5 http://incoming.debian.org unstable Release [145 kB]
+Ign http://mirror.ayous.org unstable/contrib TranslationIndex
+Get:6 http://mirror.ayous.org unstable/main TranslationIndex [2185 B]
+Get:7 http://mirror.ayous.org unstable/main Sources [6850 kB]
+Get:8 http://incoming.debian.org Release [1604 B]
+Ign http://incoming.debian.org unstable/contrib TranslationIndex
+Get:9 http://incoming.debian.org unstable/main TranslationIndex [2185 B]
+Get:10 http://incoming.debian.org unstable/main Sources [6850 kB]
+Get:11 http://incoming.debian.org unstable/contrib Sources [62.0 kB]
+Get:12 http://incoming.debian.org unstable/non-free Sources [115 kB]
+Get:13 http://incoming.debian.org unstable/main mipsel Packages [9707 kB]
+Get:14 http://mirror.ayous.org unstable/contrib Sources [62.0 kB]
+Get:15 http://mirror.ayous.org unstable/non-free Sources [115 kB]
+Get:16 http://mirror.ayous.org unstable/main mipsel Packages [9707 kB]
+Get:17 http://incoming.debian.org unstable/contrib mipsel Packages [67.0 kB]
+Get:18 http://mirror.ayous.org unstable/contrib mipsel Packages [67.0 kB]
+Ign http://mirror.ayous.org unstable/contrib Translation-en
+Get:19 http://incoming.debian.org Sources [28.7 kB]
+Get:20 http://incoming.debian.org Packages [172 kB]
Ign http://incoming.debian.org Translation-en
+Ign http://incoming.debian.org unstable/contrib Translation-en
+Fetched 34.1 MB in 2min 49s (202 kB/s)
Reading package lists...
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -985,12 +915,12 @@ Reading package lists...
Building dependency tree...
Reading state information...
NOTICE: 'r-bioc-limma' packaging is maintained in the 'Git' version control system at:
-git://anonscm.debian.org/debian-med/r-bioc-limma.git
+git://git.debian.org/git/debian-med/r-bioc-limma.git
Need to get 921 kB of source archives.
-Get:1 http://incoming.debian.org/buildd-unstable/ r-bioc-limma 3.8.2-1 (dsc) [1931 B]
-Get:2 http://incoming.debian.org/buildd-unstable/ r-bioc-limma 3.8.2-1 (tar) [917 kB]
-Get:3 http://incoming.debian.org/buildd-unstable/ r-bioc-limma 3.8.2-1 (diff) [2158 B]
-Fetched 921 kB in 1s (741 kB/s)
+Get:1 http://incoming.debian.org/buildd-unstable/ r-bioc-limma 3.8.3-1 (dsc) [1931 B]
+Get:2 http://incoming.debian.org/buildd-unstable/ r-bioc-limma 3.8.3-1 (tar) [917 kB]
+Get:3 http://incoming.debian.org/buildd-unstable/ r-bioc-limma 3.8.3-1 (diff) [2212 B]
+Fetched 921 kB in 1min 3s (14.6 kB/s)
Download complete and in download only mode
Check arch
@@ -1004,18 +934,18 @@ Check arch
Build-Depends: build-essential, fakeroot
Checking for already installed dependencies...
build-essential: already installed (11.5)
-fakeroot: already installed (1.15.1-1)
+fakeroot: already installed (1.16-1)
Checking for dependency conflicts...
Installing positive dependencies:
Reading package lists...
Building dependency tree...
Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 15 not upgraded.
+0 upgraded, 0 newly installed, 0 to remove and 19 not upgraded.
Removing negative dependencies:
Reading package lists...
Building dependency tree...
Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 15 not upgraded.
+0 upgraded, 0 newly installed, 0 to remove and 19 not upgraded.
Checking correctness of dependencies...
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -1024,279 +954,463 @@ Checking correctness of dependencies...
Build-Depends: base-files, base-passwd, bash, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, ncurses-base, ncurses-bin, perl-base, sed, login, sysvinit-utils, sysvinit, tar, bsdutils, mount, util-linux, libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 8), cdbs, r-base-dev (>= 2.10.0)
Checking for already installed dependencies...
-base-files: already installed (6.3)
-base-passwd: already installed (3.5.22)
+base-files: already installed (6.5)
+base-passwd: already installed (3.5.23)
bash: already installed (4.1-3)
coreutils: already installed (8.5-1)
dash: already installed (0.5.5.1-7.4)
-debianutils: already installed (3.4.4)
+debianutils: already installed (4.0.2)
diffutils: already installed (1:3.0-1)
-dpkg: already installed (1.16.0.2)
-e2fsprogs: already installed (1.41.12-4)
+dpkg: already installed (1.16.0.3)
+e2fsprogs: already installed (1.42~WIP-2011-07-02-1)
findutils: already installed (4.4.2-1+b1)
-grep: already installed (2.6.3-3)
-gzip: already installed (1.3.12-9)
+grep: already installed (2.9-1)
+gzip: already installed (1.4-1)
hostname: already installed (3.06)
ncurses-base: already installed (5.9-1)
ncurses-bin: already installed (5.9-1)
-perl-base: already installed (5.12.3-7)
+perl-base: already installed (5.12.4-2)
sed: already installed (4.2.1-9)
login: already installed (1:4.1.4.2+svn3283-3)
-sysvinit-utils: already installed (2.88dsf-13.2)
-sysvinit: already installed (2.88dsf-13.2)
+sysvinit-utils: already installed (2.88dsf-13.11)
+sysvinit: already installed (2.88dsf-13.11)
tar: already installed (1.25-3)
-bsdutils: already installed (1:2.17.2-9.1)
-mount: already installed (2.17.2-9.1)
-util-linux: already installed (2.17.2-9.1)
-libc6-dev: already installed (2.13-4)
-gcc: already installed (4:4.6.0-5 >= 4:4.4.3 is satisfied)
-g++: already installed (4:4.6.0-5 >= 4:4.4.3 is satisfied)
+bsdutils: already installed (1:2.19.1-5)
+mount: already installed (2.19.1-5)
+util-linux: already installed (2.19.1-5)
+libc6-dev: already installed (2.13-15)
+gcc: already installed (4:4.6.1-2 >= 4:4.4.3 is satisfied)
+g++: already installed (4:4.6.1-2 >= 4:4.4.3 is satisfied)
make: already installed (3.81-8.1)
-dpkg-dev: already installed (1.16.0.2 >= 1.13.5 is satisfied)
-debhelper: already installed (8.1.6 >= 8 is satisfied)
+dpkg-dev: already installed (1.16.0.3 >= 1.13.5 is satisfied)
+debhelper: missing
+Using default version 8.9.4
cdbs: missing
r-base-dev: missing
-Using default version 2.13.0-2
+Using default version 2.13.1-1
Checking for dependency conflicts...
-Installing positive dependencies: cdbs r-base-dev
+Installing positive dependencies: debhelper cdbs r-base-dev
Reading package lists...
Building dependency tree...
Reading state information...
The following extra packages will be installed:
- dpatch fontconfig fontconfig-config gfortran gfortran-4.6 libblas-dev
- libblas3gf libbz2-dev libcairo2 libdatrie1 libexpat1 libfontconfig1
- libfreetype6 libgfortran3 libice6 libjpeg62 libjpeg62-dev liblapack-dev
- liblapack3gf libncurses5-dev libpango1.0-0 libpaper-utils libpaper1
- libpcre3-dev libpcrecpp0 libpixman-1-0 libpng12-0 libpng12-dev
- libreadline-dev libreadline6-dev libsm6 libthai-data libthai0 libtiff4
- libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6
- libxext6 libxft2 libxrender1 libxss1 libxt6 r-base-core tcl8.5 tk8.5
- ttf-dejavu-core ucf unzip x11-common xdg-utils zip zlib1g-dev
+ bsdmainutils cpp-4.6 dpatch file fontconfig fontconfig-config g++-4.6
+ gcc-4.6 gcc-4.6-base gettext gettext-base gfortran gfortran-4.6 groff-base
+ html2text intltool-debian libblas-dev libblas3gf libbz2-dev libcairo2
+ libcroco3 libdatrie1 libexpat1 libfontconfig1 libfreetype6 libgcc1
+ libgfortran3 libglib2.0-0 libgomp1 libice6 libjpeg62 libjpeg8 libjpeg8-dev
+ liblapack-dev liblapack3gf libmagic1 libncurses5-dev libpango1.0-0
+ libpaper-utils libpaper1 libpcre3 libpcre3-dev libpcrecpp0 libpipeline1
+ libpixman-1-0 libpng12-0 libpng12-dev libreadline-dev libreadline6-dev
+ libsm6 libstdc++6 libstdc++6-4.6-dev libthai-data libthai0 libtiff4
+ libunistring0 libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0
+ libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxrender1 libxss1 libxt6 man-db
+ po-debconf r-base-core tcl8.5 tk8.5 ttf-dejavu-core ucf unzip x11-common
+ xdg-utils zip zlib1g-dev
Suggested packages:
- devscripts curl defoma gfortran-multilib gfortran-doc gfortran-4.6-multilib
- gfortran-4.6-doc libgfortran3-dbg ncurses-doc ttf-baekmuk
+ wamerican wordlist whois vacation devscripts gcc-4.6-locales dh-make curl
+ defoma g++-4.6-multilib gcc-4.6-doc libstdc++6-4.6-dbg gcc-4.6-multilib
+ libmudflap0-4.6-dev libgcc1-dbg libgomp1-dbg libquadmath-dbg libmudflap0-dbg
+ gettext-doc gfortran-multilib gfortran-doc gfortran-4.6-multilib
+ gfortran-4.6-doc libgfortran3-dbg groff ncurses-doc ttf-baekmuk
ttf-arphic-gbsn00lp ttf-arphic-bsmi00lp ttf-arphic-gkai00mp
- ttf-arphic-bkai00mp ess r-doc-info r-doc-pdf r-mathlib r-base-html
- tclreadline gvfs-bin
+ ttf-arphic-bkai00mp libstdc++6-4.6-doc less www-browser libmail-box-perl
+ r-doc-info r-doc-pdf r-mathlib r-base-html tclreadline gvfs-bin
Recommended packages:
- autotools-dev patchutils x-ttcidfont-conf r-recommended r-doc-html xterm
- x-terminal-emulator libfile-mimeinfo-perl x11-utils x11-xserver-utils
+ autotools-dev patchutils autopoint libglib2.0-data shared-mime-info
+ x-ttcidfont-conf xml-core libmail-sendmail-perl r-recommended r-doc-html
+ xterm x-terminal-emulator libfile-mimeinfo-perl x11-utils x11-xserver-utils
The following NEW packages will be installed:
- cdbs dpatch fontconfig fontconfig-config gfortran gfortran-4.6 libblas-dev
- libblas3gf libbz2-dev libcairo2 libdatrie1 libexpat1 libfontconfig1
- libfreetype6 libgfortran3 libice6 libjpeg62 libjpeg62-dev liblapack-dev
- liblapack3gf libncurses5-dev libpango1.0-0 libpaper-utils libpaper1
- libpcre3-dev libpcrecpp0 libpixman-1-0 libpng12-0 libpng12-dev
- libreadline-dev libreadline6-dev libsm6 libthai-data libthai0 libtiff4
+ bsdmainutils cdbs debhelper dpatch file fontconfig fontconfig-config gettext
+ gettext-base gfortran gfortran-4.6 groff-base html2text intltool-debian
+ libblas-dev libblas3gf libbz2-dev libcairo2 libcroco3 libdatrie1 libexpat1
+ libfontconfig1 libfreetype6 libgfortran3 libglib2.0-0 libice6 libjpeg62
+ libjpeg8 libjpeg8-dev liblapack-dev liblapack3gf libmagic1 libncurses5-dev
+ libpango1.0-0 libpaper-utils libpaper1 libpcre3 libpcre3-dev libpcrecpp0
+ libpipeline1 libpixman-1-0 libpng12-0 libpng12-dev libreadline-dev
+ libreadline6-dev libsm6 libthai-data libthai0 libtiff4 libunistring0
libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6
- libxext6 libxft2 libxrender1 libxss1 libxt6 r-base-core r-base-dev tcl8.5
- tk8.5 ttf-dejavu-core ucf unzip x11-common xdg-utils zip zlib1g-dev
+ libxext6 libxft2 libxml2 libxrender1 libxss1 libxt6 man-db po-debconf
+ r-base-core r-base-dev tcl8.5 tk8.5 ttf-dejavu-core ucf unzip x11-common
+ xdg-utils zip zlib1g-dev
+The following packages will be upgraded:
+ cpp-4.6 g++-4.6 gcc-4.6 gcc-4.6-base libgcc1 libgomp1 libstdc++6
+ libstdc++6-4.6-dev
+8 upgraded, 76 newly installed, 0 to remove and 11 not upgraded.
+Need to get 66.9 MB of archives.
+After this operation, 125 MB of additional disk space will be used.
+Get:1 http://mirror.ayous.org/debian/ unstable/main libgomp1 mipsel 4.6.1-6 [26.2 kB]
+Get:2 http://mirror.ayous.org/debian/ unstable/main gcc-4.6-base mipsel 4.6.1-6 [134 kB]
+Get:3 http://mirror.ayous.org/debian/ unstable/main libgcc1 mipsel 1:4.6.1-6 [68.5 kB]
+Get:4 http://mirror.ayous.org/debian/ unstable/main cpp-4.6 mipsel 4.6.1-6 [3750 kB]
+Get:5 http://mirror.ayous.org/debian/ unstable/main libstdc++6-4.6-dev mipsel 4.6.1-6 [1715 kB]
+Get:6 http://mirror.ayous.org/debian/ unstable/main g++-4.6 mipsel 4.6.1-6 [6180 kB]
+Get:7 http://mirror.ayous.org/debian/ unstable/main gcc-4.6 mipsel 4.6.1-6 [4067 kB]
+Get:8 http://mirror.ayous.org/debian/ unstable/main libstdc++6 mipsel 4.6.1-6 [301 kB]
+Get:9 http://mirror.ayous.org/debian/ unstable/main libpipeline1 mipsel 1.2.0-3 [35.7 kB]
+Get:10 http://mirror.ayous.org/debian/ unstable/main libpcre3 mipsel 8.12-4 [227 kB]
+Get:11 http://mirror.ayous.org/debian/ unstable/main libdatrie1 mipsel 0.2.4-3 [27.1 kB]
+Get:12 http://mirror.ayous.org/debian/ unstable/main libexpat1 mipsel 2.0.1-7 [134 kB]
+Get:13 http://mirror.ayous.org/debian/ unstable/main libfreetype6 mipsel 2.4.6-1 [416 kB]
+Get:14 http://mirror.ayous.org/debian/ unstable/main ucf all 3.0025+nmu2 [70.6 kB]
+Get:15 http://mirror.ayous.org/debian/ unstable/main ttf-dejavu-core all 2.33-1 [1550 kB]
+Get:16 http://mirror.ayous.org/debian/ unstable/main fontconfig-config all 2.8.0-3 [221 kB]
+Get:17 http://mirror.ayous.org/debian/ unstable/main libfontconfig1 mipsel 2.8.0-3 [285 kB]
+Get:18 http://mirror.ayous.org/debian/ unstable/main libgfortran3 mipsel 4.6.1-6 [231 kB]
+Get:19 http://mirror.ayous.org/debian/ unstable/main x11-common all 1:7.6+7 [275 kB]
+Get:20 http://mirror.ayous.org/debian/ unstable/main libice6 mipsel 2:1.0.7-2 [49.9 kB]
+Get:21 http://mirror.ayous.org/debian/ unstable/main libpixman-1-0 mipsel 0.22.2-1 [338 kB]
+Get:22 http://mirror.ayous.org/debian/ unstable/main libpng12-0 mipsel 1.2.46-3 [184 kB]
+Get:23 http://mirror.ayous.org/debian/ unstable/main libxau6 mipsel 1:1.0.6-3 [16.6 kB]
+Get:24 http://mirror.ayous.org/debian/ unstable/main libxdmcp6 mipsel 1:1.1.0-3 [22.2 kB]
+Get:25 http://mirror.ayous.org/debian/ unstable/main libxcb1 mipsel 1.7-3 [37.7 kB]
+Get:26 http://mirror.ayous.org/debian/ unstable/main libx11-data all 2:1.4.4-1 [183 kB]
+Get:27 http://mirror.ayous.org/debian/ unstable/main libx11-6 mipsel 2:1.4.4-1 [858 kB]
+Get:28 http://mirror.ayous.org/debian/ unstable/main libxcb-render0 mipsel 1.7-3 [14.5 kB]
+Get:29 http://mirror.ayous.org/debian/ unstable/main libxcb-shm0 mipsel 1.7-3 [9366 B]
+Get:30 http://mirror.ayous.org/debian/ unstable/main libxrender1 mipsel 1:0.9.6-2 [30.2 kB]
+Get:31 http://mirror.ayous.org/debian/ unstable/main libcairo2 mipsel 1.10.2-6.1 [954 kB]
+Get:32 http://mirror.ayous.org/debian/ unstable/main libglib2.0-0 mipsel 2.28.6-1 [1503 kB]
+Get:33 http://mirror.ayous.org/debian/ unstable/main libthai-data all 0.1.15-2 [201 kB]
+Get:34 http://mirror.ayous.org/debian/ unstable/main libthai0 mipsel 0.1.15-2 [41.6 kB]
+Get:35 http://mirror.ayous.org/debian/ unstable/main libxft2 mipsel 2.2.0-3 [56.8 kB]
+Get:36 http://mirror.ayous.org/debian/ unstable/main fontconfig mipsel 2.8.0-3 [334 kB]
+Get:37 http://mirror.ayous.org/debian/ unstable/main libpango1.0-0 mipsel 1.28.4-2 [418 kB]
+Get:38 http://mirror.ayous.org/debian/ unstable/main libpcrecpp0 mipsel 8.12-4 [112 kB]
+Get:39 http://mirror.ayous.org/debian/ unstable/main libsm6 mipsel 2:1.2.0-2 [28.1 kB]
+Get:40 http://mirror.ayous.org/debian/ unstable/main libxext6 mipsel 2:1.3.0-3 [48.8 kB]
+Get:41 http://mirror.ayous.org/debian/ unstable/main libxss1 mipsel 1:1.2.1-2 [16.5 kB]
+Get:42 http://mirror.ayous.org/debian/ unstable/main libxt6 mipsel 1:1.1.1-2 [189 kB]
+Get:43 http://mirror.ayous.org/debian/ unstable/main bsdmainutils mipsel 8.2.3 [208 kB]
+Get:44 http://mirror.ayous.org/debian/ unstable/main groff-base mipsel 1.21-6 [1142 kB]
+Get:45 http://mirror.ayous.org/debian/ unstable/main man-db mipsel 2.6.0.2-2 [986 kB]
+Get:46 http://mirror.ayous.org/debian/ unstable/main libmagic1 mipsel 5.04-5+b1 [238 kB]
+Get:47 http://mirror.ayous.org/debian/ unstable/main file mipsel 5.04-5+b1 [49.9 kB]
+Get:48 http://mirror.ayous.org/debian/ unstable/main gettext-base mipsel 0.18.1.1-4 [133 kB]
+Get:49 http://mirror.ayous.org/debian/ unstable/main libxml2 mipsel 2.7.8.dfsg-4 [858 kB]
+Get:50 http://mirror.ayous.org/debian/ unstable/main html2text mipsel 1.3.2a-15 [103 kB]
+Get:51 http://mirror.ayous.org/debian/ unstable/main libcroco3 mipsel 0.6.2-1 [110 kB]
+Get:52 http://mirror.ayous.org/debian/ unstable/main libunistring0 mipsel 0.9.3-4 [411 kB]
+Get:53 http://mirror.ayous.org/debian/ unstable/main gettext mipsel 0.18.1.1-4 [2008 kB]
+Get:54 http://mirror.ayous.org/debian/ unstable/main intltool-debian all 0.35.0+20060710.1 [30.8 kB]
+Get:55 http://mirror.ayous.org/debian/ unstable/main po-debconf all 1.0.16+nmu1 [223 kB]
+Get:56 http://mirror.ayous.org/debian/ unstable/main debhelper all 8.9.4 [561 kB]
+Get:57 http://mirror.ayous.org/debian/ unstable/main cdbs all 0.4.96 [75.8 kB]
+Get:58 http://mirror.ayous.org/debian/ unstable/main dpatch all 2.0.31 [92.3 kB]
+Get:59 http://mirror.ayous.org/debian/ unstable/main gfortran-4.6 mipsel 4.6.1-6 [4379 kB]
+Get:60 http://mirror.ayous.org/debian/ unstable/main gfortran mipsel 4:4.6.1-2 [1130 B]
+Get:61 http://mirror.ayous.org/debian/ unstable/main libblas3gf mipsel 1.2.20110419-2 [203 kB]
+Get:62 http://mirror.ayous.org/debian/ unstable/main libblas-dev mipsel 1.2.20110419-2 [244 kB]
+Get:63 http://mirror.ayous.org/debian/ unstable/main libbz2-dev mipsel 1.0.5-6 [38.1 kB]
+Get:64 http://mirror.ayous.org/debian/ unstable/main libjpeg62 mipsel 6b1-2 [93.7 kB]
+Get:65 http://mirror.ayous.org/debian/ unstable/main libjpeg8 mipsel 8c-2 [145 kB]
+Get:66 http://mirror.ayous.org/debian/ unstable/main libjpeg8-dev mipsel 8c-2 [256 kB]
+Get:67 http://mirror.ayous.org/debian/ unstable/main liblapack3gf mipsel 3.3.1-1 [4277 kB]
+Get:68 http://mirror.ayous.org/debian/ unstable/main liblapack-dev mipsel 3.3.1-1 [4906 kB]
+Get:69 http://mirror.ayous.org/debian/ unstable/main libncurses5-dev mipsel 5.9-1 [506 kB]
+Get:70 http://mirror.ayous.org/debian/ unstable/main libpaper1 mipsel 1.1.24+nmu1 [21.2 kB]
+Get:71 http://mirror.ayous.org/debian/ unstable/main libpaper-utils mipsel 1.1.24+nmu1 [18.2 kB]
+Get:72 http://mirror.ayous.org/debian/ unstable/main libpcre3-dev mipsel 8.12-4 [316 kB]
+Get:73 http://mirror.ayous.org/debian/ unstable/main zlib1g-dev mipsel 1:1.2.3.4.dfsg-3 [192 kB]
+Get:74 http://mirror.ayous.org/debian/ unstable/main libpng12-dev mipsel 1.2.46-3 [275 kB]
+Get:75 http://mirror.ayous.org/debian/ unstable/main libreadline6-dev mipsel 6.2-2 [270 kB]
+Get:76 http://mirror.ayous.org/debian/ unstable/main libreadline-dev mipsel 6.2-2 [882 B]
+Get:77 http://mirror.ayous.org/debian/ unstable/main libtiff4 mipsel 3.9.5-1 [191 kB]
+Get:78 http://mirror.ayous.org/debian/ unstable/main zip mipsel 3.0-4 [334 kB]
+Get:79 http://mirror.ayous.org/debian/ unstable/main unzip mipsel 6.0-5 [189 kB]
+Get:80 http://mirror.ayous.org/debian/ unstable/main xdg-utils all 1.1.0~rc1-2 [70.2 kB]
+Get:81 http://mirror.ayous.org/debian/ unstable/main tcl8.5 mipsel 8.5.10-1 [1604 kB]
+Get:82 http://mirror.ayous.org/debian/ unstable/main tk8.5 mipsel 8.5.10-1 [1162 kB]
+Get:83 http://mirror.ayous.org/debian/ unstable/main r-base-core mipsel 2.13.1-1 [14.6 MB]
+Get:84 http://mirror.ayous.org/debian/ unstable/main r-base-dev all 2.13.1-1 [3490 B]
debconf: delaying package configuration, since apt-utils is not installed
-0 upgraded, 58 newly installed, 0 to remove and 15 not upgraded.
-Need to get 0 B/42.1 MB of archives.
-After this operation, 98.3 MB of additional disk space will be used.
-Selecting previously deselected package ucf.
-(Reading database ... 12241 files and directories currently installed.)
-Unpacking ucf (from .../ucf_3.0025+nmu2_all.deb) ...
-Moving old data out of the way
-Selecting previously deselected package cdbs.
-Unpacking cdbs (from .../archives/cdbs_0.4.94_all.deb) ...
-Selecting previously deselected package dpatch.
-Unpacking dpatch (from .../archives/dpatch_2.0.31_all.deb) ...
+Fetched 66.9 MB in 13s (5012 kB/s)
+(Reading database ... 10806 files and directories currently installed.)
+Preparing to replace libgomp1 4.6.1-5 (using .../libgomp1_4.6.1-6_mipsel.deb) ...
+Unpacking replacement libgomp1 ...
+Preparing to replace gcc-4.6-base 4.6.1-5 (using .../gcc-4.6-base_4.6.1-6_mipsel.deb) ...
+Unpacking replacement gcc-4.6-base ...
+Setting up gcc-4.6-base (4.6.1-6) ...
+(Reading database ... 10806 files and directories currently installed.)
+Preparing to replace libgcc1 1:4.6.1-5 (using .../libgcc1_1%3a4.6.1-6_mipsel.deb) ...
+Unpacking replacement libgcc1 ...
+Setting up libgcc1 (1:4.6.1-6) ...
+(Reading database ... 10806 files and directories currently installed.)
+Preparing to replace cpp-4.6 4.6.1-5 (using .../cpp-4.6_4.6.1-6_mipsel.deb) ...
+Unpacking replacement cpp-4.6 ...
+Preparing to replace libstdc++6-4.6-dev 4.6.1-5 (using .../libstdc++6-4.6-dev_4.6.1-6_mipsel.deb) ...
+Unpacking replacement libstdc++6-4.6-dev ...
+Preparing to replace g++-4.6 4.6.1-5 (using .../g++-4.6_4.6.1-6_mipsel.deb) ...
+Unpacking replacement g++-4.6 ...
+Preparing to replace gcc-4.6 4.6.1-5 (using .../gcc-4.6_4.6.1-6_mipsel.deb) ...
+Unpacking replacement gcc-4.6 ...
+Preparing to replace libstdc++6 4.6.1-5 (using .../libstdc++6_4.6.1-6_mipsel.deb) ...
+Unpacking replacement libstdc++6 ...
+Setting up libstdc++6 (4.6.1-6) ...
+Selecting previously deselected package libpipeline1.
+(Reading database ... 10806 files and directories currently installed.)
+Unpacking libpipeline1 (from .../libpipeline1_1.2.0-3_mipsel.deb) ...
+Selecting previously deselected package libpcre3.
+Unpacking libpcre3 (from .../libpcre3_8.12-4_mipsel.deb) ...
+Selecting previously deselected package libdatrie1.
+Unpacking libdatrie1 (from .../libdatrie1_0.2.4-3_mipsel.deb) ...
Selecting previously deselected package libexpat1.
Unpacking libexpat1 (from .../libexpat1_2.0.1-7_mipsel.deb) ...
Selecting previously deselected package libfreetype6.
-Unpacking libfreetype6 (from .../libfreetype6_2.4.4-1_mipsel.deb) ...
+Unpacking libfreetype6 (from .../libfreetype6_2.4.6-1_mipsel.deb) ...
+Selecting previously deselected package ucf.
+Unpacking ucf (from .../ucf_3.0025+nmu2_all.deb) ...
+Moving old data out of the way
Selecting previously deselected package ttf-dejavu-core.
Unpacking ttf-dejavu-core (from .../ttf-dejavu-core_2.33-1_all.deb) ...
Selecting previously deselected package fontconfig-config.
-Unpacking fontconfig-config (from .../fontconfig-config_2.8.0-2.2_all.deb) ...
+Unpacking fontconfig-config (from .../fontconfig-config_2.8.0-3_all.deb) ...
Selecting previously deselected package libfontconfig1.
-Unpacking libfontconfig1 (from .../libfontconfig1_2.8.0-2.2_mipsel.deb) ...
-Selecting previously deselected package fontconfig.
-Unpacking fontconfig (from .../fontconfig_2.8.0-2.2_mipsel.deb) ...
+Unpacking libfontconfig1 (from .../libfontconfig1_2.8.0-3_mipsel.deb) ...
Selecting previously deselected package libgfortran3.
-Unpacking libgfortran3 (from .../libgfortran3_4.6.0-10_mipsel.deb) ...
-Selecting previously deselected package gfortran-4.6.
-Unpacking gfortran-4.6 (from .../gfortran-4.6_4.6.0-10_mipsel.deb) ...
-Selecting previously deselected package gfortran.
-Unpacking gfortran (from .../gfortran_4%3a4.6.0-5_mipsel.deb) ...
-Selecting previously deselected package libblas3gf.
-Unpacking libblas3gf (from .../libblas3gf_1.2-8_mipsel.deb) ...
-Selecting previously deselected package libblas-dev.
-Unpacking libblas-dev (from .../libblas-dev_1.2-8_mipsel.deb) ...
-Selecting previously deselected package libbz2-dev.
-Unpacking libbz2-dev (from .../libbz2-dev_1.0.5-6_mipsel.deb) ...
+Unpacking libgfortran3 (from .../libgfortran3_4.6.1-6_mipsel.deb) ...
+Selecting previously deselected package x11-common.
+Unpacking x11-common (from .../x11-common_1%3a7.6+7_all.deb) ...
+Selecting previously deselected package libice6.
+Unpacking libice6 (from .../libice6_2%3a1.0.7-2_mipsel.deb) ...
Selecting previously deselected package libpixman-1-0.
-Unpacking libpixman-1-0 (from .../libpixman-1-0_0.21.8-1_mipsel.deb) ...
+Unpacking libpixman-1-0 (from .../libpixman-1-0_0.22.2-1_mipsel.deb) ...
Selecting previously deselected package libpng12-0.
-Unpacking libpng12-0 (from .../libpng12-0_1.2.44-2_mipsel.deb) ...
+Unpacking libpng12-0 (from .../libpng12-0_1.2.46-3_mipsel.deb) ...
Selecting previously deselected package libxau6.
-Unpacking libxau6 (from .../libxau6_1%3a1.0.6-1_mipsel.deb) ...
+Unpacking libxau6 (from .../libxau6_1%3a1.0.6-3_mipsel.deb) ...
Selecting previously deselected package libxdmcp6.
-Unpacking libxdmcp6 (from .../libxdmcp6_1%3a1.1.0-1_mipsel.deb) ...
+Unpacking libxdmcp6 (from .../libxdmcp6_1%3a1.1.0-3_mipsel.deb) ...
Selecting previously deselected package libxcb1.
-Unpacking libxcb1 (from .../libxcb1_1.7-2_mipsel.deb) ...
+Unpacking libxcb1 (from .../libxcb1_1.7-3_mipsel.deb) ...
Selecting previously deselected package libx11-data.
-Unpacking libx11-data (from .../libx11-data_2%3a1.4.3-1_all.deb) ...
+Unpacking libx11-data (from .../libx11-data_2%3a1.4.4-1_all.deb) ...
Selecting previously deselected package libx11-6.
-Unpacking libx11-6 (from .../libx11-6_2%3a1.4.3-1_mipsel.deb) ...
+Unpacking libx11-6 (from .../libx11-6_2%3a1.4.4-1_mipsel.deb) ...
Selecting previously deselected package libxcb-render0.
-Unpacking libxcb-render0 (from .../libxcb-render0_1.7-2_mipsel.deb) ...
+Unpacking libxcb-render0 (from .../libxcb-render0_1.7-3_mipsel.deb) ...
Selecting previously deselected package libxcb-shm0.
-Unpacking libxcb-shm0 (from .../libxcb-shm0_1.7-2_mipsel.deb) ...
+Unpacking libxcb-shm0 (from .../libxcb-shm0_1.7-3_mipsel.deb) ...
Selecting previously deselected package libxrender1.
-Unpacking libxrender1 (from .../libxrender1_1%3a0.9.6-1_mipsel.deb) ...
+Unpacking libxrender1 (from .../libxrender1_1%3a0.9.6-2_mipsel.deb) ...
Selecting previously deselected package libcairo2.
-Unpacking libcairo2 (from .../libcairo2_1.10.2-6_mipsel.deb) ...
-Selecting previously deselected package libdatrie1.
-Unpacking libdatrie1 (from .../libdatrie1_0.2.4-2_mipsel.deb) ...
-Selecting previously deselected package x11-common.
-Unpacking x11-common (from .../x11-common_1%3a7.6+6_all.deb) ...
-Selecting previously deselected package libice6.
-Unpacking libice6 (from .../libice6_2%3a1.0.7-1_mipsel.deb) ...
+Unpacking libcairo2 (from .../libcairo2_1.10.2-6.1_mipsel.deb) ...
+Selecting previously deselected package libglib2.0-0.
+Unpacking libglib2.0-0 (from .../libglib2.0-0_2.28.6-1_mipsel.deb) ...
+Selecting previously deselected package libthai-data.
+Unpacking libthai-data (from .../libthai-data_0.1.15-2_all.deb) ...
+Selecting previously deselected package libthai0.
+Unpacking libthai0 (from .../libthai0_0.1.15-2_mipsel.deb) ...
+Selecting previously deselected package libxft2.
+Unpacking libxft2 (from .../libxft2_2.2.0-3_mipsel.deb) ...
+Selecting previously deselected package fontconfig.
+Unpacking fontconfig (from .../fontconfig_2.8.0-3_mipsel.deb) ...
+Selecting previously deselected package libpango1.0-0.
+Unpacking libpango1.0-0 (from .../libpango1.0-0_1.28.4-2_mipsel.deb) ...
+Selecting previously deselected package libpcrecpp0.
+Unpacking libpcrecpp0 (from .../libpcrecpp0_8.12-4_mipsel.deb) ...
+Selecting previously deselected package libsm6.
+Unpacking libsm6 (from .../libsm6_2%3a1.2.0-2_mipsel.deb) ...
+Selecting previously deselected package libxext6.
+Unpacking libxext6 (from .../libxext6_2%3a1.3.0-3_mipsel.deb) ...
+Selecting previously deselected package libxss1.
+Unpacking libxss1 (from .../libxss1_1%3a1.2.1-2_mipsel.deb) ...
+Selecting previously deselected package libxt6.
+Unpacking libxt6 (from .../libxt6_1%3a1.1.1-2_mipsel.deb) ...
+Selecting previously deselected package bsdmainutils.
+Unpacking bsdmainutils (from .../bsdmainutils_8.2.3_mipsel.deb) ...
+Selecting previously deselected package groff-base.
+Unpacking groff-base (from .../groff-base_1.21-6_mipsel.deb) ...
+Selecting previously deselected package man-db.
+Unpacking man-db (from .../man-db_2.6.0.2-2_mipsel.deb) ...
+Selecting previously deselected package libmagic1.
+Unpacking libmagic1 (from .../libmagic1_5.04-5+b1_mipsel.deb) ...
+Selecting previously deselected package file.
+Unpacking file (from .../file_5.04-5+b1_mipsel.deb) ...
+Selecting previously deselected package gettext-base.
+Unpacking gettext-base (from .../gettext-base_0.18.1.1-4_mipsel.deb) ...
+Selecting previously deselected package libxml2.
+Unpacking libxml2 (from .../libxml2_2.7.8.dfsg-4_mipsel.deb) ...
+Selecting previously deselected package html2text.
+Unpacking html2text (from .../html2text_1.3.2a-15_mipsel.deb) ...
+Selecting previously deselected package libcroco3.
+Unpacking libcroco3 (from .../libcroco3_0.6.2-1_mipsel.deb) ...
+Selecting previously deselected package libunistring0.
+Unpacking libunistring0 (from .../libunistring0_0.9.3-4_mipsel.deb) ...
+Selecting previously deselected package gettext.
+Unpacking gettext (from .../gettext_0.18.1.1-4_mipsel.deb) ...
+Selecting previously deselected package intltool-debian.
+Unpacking intltool-debian (from .../intltool-debian_0.35.0+20060710.1_all.deb) ...
+Selecting previously deselected package po-debconf.
+Unpacking po-debconf (from .../po-debconf_1.0.16+nmu1_all.deb) ...
+Selecting previously deselected package debhelper.
+Unpacking debhelper (from .../debhelper_8.9.4_all.deb) ...
+Selecting previously deselected package cdbs.
+Unpacking cdbs (from .../archives/cdbs_0.4.96_all.deb) ...
+Selecting previously deselected package dpatch.
+Unpacking dpatch (from .../archives/dpatch_2.0.31_all.deb) ...
+Selecting previously deselected package gfortran-4.6.
+Unpacking gfortran-4.6 (from .../gfortran-4.6_4.6.1-6_mipsel.deb) ...
+Selecting previously deselected package gfortran.
+Unpacking gfortran (from .../gfortran_4%3a4.6.1-2_mipsel.deb) ...
+Selecting previously deselected package libblas3gf.
+Unpacking libblas3gf (from .../libblas3gf_1.2.20110419-2_mipsel.deb) ...
+Selecting previously deselected package libblas-dev.
+Unpacking libblas-dev (from .../libblas-dev_1.2.20110419-2_mipsel.deb) ...
+Selecting previously deselected package libbz2-dev.
+Unpacking libbz2-dev (from .../libbz2-dev_1.0.5-6_mipsel.deb) ...
Selecting previously deselected package libjpeg62.
-Unpacking libjpeg62 (from .../libjpeg62_6b1-1_mipsel.deb) ...
-Selecting previously deselected package libjpeg62-dev.
-Unpacking libjpeg62-dev (from .../libjpeg62-dev_6b1-1_mipsel.deb) ...
+Unpacking libjpeg62 (from .../libjpeg62_6b1-2_mipsel.deb) ...
+Selecting previously deselected package libjpeg8.
+Unpacking libjpeg8 (from .../libjpeg8_8c-2_mipsel.deb) ...
+Selecting previously deselected package libjpeg8-dev.
+Unpacking libjpeg8-dev (from .../libjpeg8-dev_8c-2_mipsel.deb) ...
Selecting previously deselected package liblapack3gf.
-Unpacking liblapack3gf (from .../liblapack3gf_3.3.0-4_mipsel.deb) ...
+Unpacking liblapack3gf (from .../liblapack3gf_3.3.1-1_mipsel.deb) ...
Selecting previously deselected package liblapack-dev.
-Unpacking liblapack-dev (from .../liblapack-dev_3.3.0-4_mipsel.deb) ...
+Unpacking liblapack-dev (from .../liblapack-dev_3.3.1-1_mipsel.deb) ...
Selecting previously deselected package libncurses5-dev.
Unpacking libncurses5-dev (from .../libncurses5-dev_5.9-1_mipsel.deb) ...
-Selecting previously deselected package libthai-data.
-Unpacking libthai-data (from .../libthai-data_0.1.15-1_all.deb) ...
-Selecting previously deselected package libthai0.
-Unpacking libthai0 (from .../libthai0_0.1.15-1_mipsel.deb) ...
-Selecting previously deselected package libxft2.
-Unpacking libxft2 (from .../libxft2_2.2.0-2_mipsel.deb) ...
-Selecting previously deselected package libpango1.0-0.
-Unpacking libpango1.0-0 (from .../libpango1.0-0_1.28.3-6_mipsel.deb) ...
Selecting previously deselected package libpaper1.
Unpacking libpaper1 (from .../libpaper1_1.1.24+nmu1_mipsel.deb) ...
Selecting previously deselected package libpaper-utils.
Unpacking libpaper-utils (from .../libpaper-utils_1.1.24+nmu1_mipsel.deb) ...
-Selecting previously deselected package libpcrecpp0.
-Unpacking libpcrecpp0 (from .../libpcrecpp0_8.12-3_mipsel.deb) ...
Selecting previously deselected package libpcre3-dev.
-Unpacking libpcre3-dev (from .../libpcre3-dev_8.12-3_mipsel.deb) ...
+Unpacking libpcre3-dev (from .../libpcre3-dev_8.12-4_mipsel.deb) ...
Selecting previously deselected package zlib1g-dev.
Unpacking zlib1g-dev (from .../zlib1g-dev_1%3a1.2.3.4.dfsg-3_mipsel.deb) ...
Selecting previously deselected package libpng12-dev.
-Unpacking libpng12-dev (from .../libpng12-dev_1.2.44-2_mipsel.deb) ...
+Unpacking libpng12-dev (from .../libpng12-dev_1.2.46-3_mipsel.deb) ...
Selecting previously deselected package libreadline6-dev.
Unpacking libreadline6-dev (from .../libreadline6-dev_6.2-2_mipsel.deb) ...
Selecting previously deselected package libreadline-dev.
Unpacking libreadline-dev (from .../libreadline-dev_6.2-2_mipsel.deb) ...
-Selecting previously deselected package libsm6.
-Unpacking libsm6 (from .../libsm6_2%3a1.2.0-1_mipsel.deb) ...
Selecting previously deselected package libtiff4.
Unpacking libtiff4 (from .../libtiff4_3.9.5-1_mipsel.deb) ...
-Selecting previously deselected package libxext6.
-Unpacking libxext6 (from .../libxext6_2%3a1.3.0-1_mipsel.deb) ...
-Selecting previously deselected package libxss1.
-Unpacking libxss1 (from .../libxss1_1%3a1.2.1-1_mipsel.deb) ...
-Selecting previously deselected package libxt6.
-Unpacking libxt6 (from .../libxt6_1%3a1.1.1-1_mipsel.deb) ...
Selecting previously deselected package zip.
-Unpacking zip (from .../archives/zip_3.0-3_mipsel.deb) ...
+Unpacking zip (from .../archives/zip_3.0-4_mipsel.deb) ...
Selecting previously deselected package unzip.
-Unpacking unzip (from .../unzip_6.0-4_mipsel.deb) ...
+Unpacking unzip (from .../unzip_6.0-5_mipsel.deb) ...
Selecting previously deselected package xdg-utils.
Unpacking xdg-utils (from .../xdg-utils_1.1.0~rc1-2_all.deb) ...
Selecting previously deselected package tcl8.5.
-Unpacking tcl8.5 (from .../tcl8.5_8.5.9-2_mipsel.deb) ...
+Unpacking tcl8.5 (from .../tcl8.5_8.5.10-1_mipsel.deb) ...
Selecting previously deselected package tk8.5.
-Unpacking tk8.5 (from .../tk8.5_8.5.9-2_mipsel.deb) ...
+Unpacking tk8.5 (from .../tk8.5_8.5.10-1_mipsel.deb) ...
Selecting previously deselected package r-base-core.
-Unpacking r-base-core (from .../r-base-core_2.13.0-2_mipsel.deb) ...
+Unpacking r-base-core (from .../r-base-core_2.13.1-1_mipsel.deb) ...
Selecting previously deselected package r-base-dev.
-Unpacking r-base-dev (from .../r-base-dev_2.13.0-2_all.deb) ...
-Processing triggers for man-db ...
-Setting up ucf (3.0025+nmu2) ...
-Setting up cdbs (0.4.94) ...
-Setting up dpatch (2.0.31) ...
+Unpacking r-base-dev (from .../r-base-dev_2.13.1-1_all.deb) ...
+Setting up libgomp1 (4.6.1-6) ...
+Setting up cpp-4.6 (4.6.1-6) ...
+Setting up gcc-4.6 (4.6.1-6) ...
+Setting up libpipeline1 (1.2.0-3) ...
+Setting up libpcre3 (8.12-4) ...
+Setting up libdatrie1 (0.2.4-3) ...
Setting up libexpat1 (2.0.1-7) ...
-Setting up libfreetype6 (2.4.4-1) ...
+Setting up libfreetype6 (2.4.6-1) ...
+Setting up ucf (3.0025+nmu2) ...
Setting up ttf-dejavu-core (2.33-1) ...
-Setting up fontconfig-config (2.8.0-2.2) ...
-Setting up libfontconfig1 (2.8.0-2.2) ...
-Setting up fontconfig (2.8.0-2.2) ...
+Setting up fontconfig-config (2.8.0-3) ...
+Setting up libfontconfig1 (2.8.0-3) ...
+Setting up libgfortran3 (4.6.1-6) ...
+Setting up x11-common (1:7.6+7) ...
+All runlevel operations denied by policy
+invoke-rc.d: policy-rc.d denied execution of start.
+Setting up libice6 (2:1.0.7-2) ...
+Setting up libpixman-1-0 (0.22.2-1) ...
+Setting up libpng12-0 (1.2.46-3) ...
+Setting up libxau6 (1:1.0.6-3) ...
+Setting up libxdmcp6 (1:1.1.0-3) ...
+Setting up libxcb1 (1.7-3) ...
+Setting up libx11-data (2:1.4.4-1) ...
+Setting up libx11-6 (2:1.4.4-1) ...
+Setting up libxcb-render0 (1.7-3) ...
+Setting up libxcb-shm0 (1.7-3) ...
+Setting up libxrender1 (1:0.9.6-2) ...
+Setting up libcairo2 (1.10.2-6.1) ...
+Setting up libglib2.0-0 (2.28.6-1) ...
+No schema files found: doing nothing.
+Setting up libthai-data (0.1.15-2) ...
+Setting up libthai0 (0.1.15-2) ...
+Setting up libxft2 (2.2.0-3) ...
+Setting up fontconfig (2.8.0-3) ...
Cleaning up old fontconfig caches... done.
Regenerating fonts cache... done.
-Setting up libgfortran3 (4.6.0-10) ...
-Setting up gfortran-4.6 (4.6.0-10) ...
-Setting up gfortran (4:4.6.0-5) ...
+Setting up libpango1.0-0 (1.28.4-2) ...
+Setting up libpcrecpp0 (8.12-4) ...
+Setting up libsm6 (2:1.2.0-2) ...
+Setting up libxext6 (2:1.3.0-3) ...
+Setting up libxss1 (1:1.2.1-2) ...
+Setting up libxt6 (1:1.1.1-2) ...
+Setting up bsdmainutils (8.2.3) ...
+update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode.
+update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode.
+Setting up groff-base (1.21-6) ...
+Setting up man-db (2.6.0.2-2) ...
+Building database of manual pages ...
+Setting up libmagic1 (5.04-5+b1) ...
+Setting up file (5.04-5+b1) ...
+Setting up gettext-base (0.18.1.1-4) ...
+Setting up libxml2 (2.7.8.dfsg-4) ...
+Setting up html2text (1.3.2a-15) ...
+Setting up libcroco3 (0.6.2-1) ...
+Setting up libunistring0 (0.9.3-4) ...
+Setting up gettext (0.18.1.1-4) ...
+Setting up intltool-debian (0.35.0+20060710.1) ...
+Setting up po-debconf (1.0.16+nmu1) ...
+Setting up debhelper (8.9.4) ...
+Setting up cdbs (0.4.96) ...
+Setting up dpatch (2.0.31) ...
+Setting up gfortran-4.6 (4.6.1-6) ...
+Setting up gfortran (4:4.6.1-2) ...
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode.
-Setting up libblas3gf (1.2-8) ...
+Setting up libblas3gf (1.2.20110419-2) ...
update-alternatives: using /usr/lib/libblas/libblas.so.3gf to provide /usr/lib/libblas.so.3gf (libblas.so.3gf) in auto mode.
-Setting up libblas-dev (1.2-8) ...
+Setting up libblas-dev (1.2.20110419-2) ...
update-alternatives: using /usr/lib/libblas/libblas.so to provide /usr/lib/libblas.so (libblas.so) in auto mode.
Setting up libbz2-dev (1.0.5-6) ...
-Setting up libpixman-1-0 (0.21.8-1) ...
-Setting up libpng12-0 (1.2.44-2) ...
-Setting up libxau6 (1:1.0.6-1) ...
-Setting up libxdmcp6 (1:1.1.0-1) ...
-Setting up libxcb1 (1.7-2) ...
-Setting up libx11-data (2:1.4.3-1) ...
-Setting up libx11-6 (2:1.4.3-1) ...
-Setting up libxcb-render0 (1.7-2) ...
-Setting up libxcb-shm0 (1.7-2) ...
-Setting up libxrender1 (1:0.9.6-1) ...
-Setting up libcairo2 (1.10.2-6) ...
-Setting up libdatrie1 (0.2.4-2) ...
-Setting up x11-common (1:7.6+6) ...
-All runlevel operations denied by policy
-invoke-rc.d: policy-rc.d denied execution of start.
-Setting up libice6 (2:1.0.7-1) ...
-Setting up libjpeg62 (6b1-1) ...
-Setting up libjpeg62-dev (6b1-1) ...
-Setting up liblapack3gf (3.3.0-4) ...
+Setting up libjpeg62 (6b1-2) ...
+Setting up libjpeg8 (8c-2) ...
+Setting up libjpeg8-dev (8c-2) ...
+Setting up liblapack3gf (3.3.1-1) ...
update-alternatives: using /usr/lib/lapack/liblapack.so.3gf to provide /usr/lib/liblapack.so.3gf (liblapack.so.3gf) in auto mode.
-Setting up liblapack-dev (3.3.0-4) ...
+Setting up liblapack-dev (3.3.1-1) ...
update-alternatives: using /usr/lib/lapack/liblapack.so to provide /usr/lib/liblapack.so (liblapack.so) in auto mode.
Setting up libncurses5-dev (5.9-1) ...
-Setting up libthai-data (0.1.15-1) ...
-Setting up libthai0 (0.1.15-1) ...
-Setting up libxft2 (2.2.0-2) ...
-Setting up libpango1.0-0 (1.28.3-6) ...
Setting up libpaper1 (1.1.24+nmu1) ...
Creating config file /etc/papersize with new version
Setting up libpaper-utils (1.1.24+nmu1) ...
-Setting up libpcrecpp0 (8.12-3) ...
-Setting up libpcre3-dev (8.12-3) ...
+Setting up libpcre3-dev (8.12-4) ...
Setting up zlib1g-dev (1:1.2.3.4.dfsg-3) ...
-Setting up libpng12-dev (1.2.44-2) ...
+Setting up libpng12-dev (1.2.46-3) ...
Setting up libreadline6-dev (6.2-2) ...
Setting up libreadline-dev (6.2-2) ...
-Setting up libsm6 (2:1.2.0-1) ...
Setting up libtiff4 (3.9.5-1) ...
-Setting up libxext6 (2:1.3.0-1) ...
-Setting up libxss1 (1:1.2.1-1) ...
-Setting up libxt6 (1:1.1.1-1) ...
-Setting up zip (3.0-3) ...
-Setting up unzip (6.0-4) ...
+Setting up zip (3.0-4) ...
+Setting up unzip (6.0-5) ...
Setting up xdg-utils (1.1.0~rc1-2) ...
-Setting up tcl8.5 (8.5.9-2) ...
+Setting up tcl8.5 (8.5.10-1) ...
update-alternatives: using /usr/bin/tclsh8.5 to provide /usr/bin/tclsh (tclsh) in auto mode.
-Setting up tk8.5 (8.5.9-2) ...
+Setting up tk8.5 (8.5.10-1) ...
update-alternatives: using /usr/bin/wish8.5 to provide /usr/bin/wish (wish) in auto mode.
-Setting up r-base-core (2.13.0-2) ...
+Setting up r-base-core (2.13.1-1) ...
Setting R_PAPERSIZE_USER default to 'a4'
Creating config file /etc/R/Renviron with new version
-Setting up r-base-dev (2.13.0-2) ...
+Setting up r-base-dev (2.13.1-1) ...
+Setting up libstdc++6-4.6-dev (4.6.1-6) ...
+Setting up g++-4.6 (4.6.1-6) ...
Removing negative dependencies:
Reading package lists...
Building dependency tree...
Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 15 not upgraded.
+0 upgraded, 0 newly installed, 0 to remove and 11 not upgraded.
Checking correctness of dependencies...
-Kernel: Linux 2.6.32-5-sb1-bcm91250a mipsel (mips64)
-Toolchain package versions: binutils_2.21.51.20110523-1 dpkg-dev_1.16.0.2 g++-4.6_4.6.0-10 gcc-4.6_4.6.0-10 libc6-dev_2.13-4 libstdc++6_4.6.0-10 libstdc++6-4.6-dev_4.6.0-10 linux-libc-dev_2.6.38-4
-Package versions: apt_0.8.14.1 base-files_6.3 base-passwd_3.5.22 bash_4.1-3 binutils_2.21.51.20110523-1 bsdmainutils_8.2.2 bsdutils_1:2.17.2-9.1 build-essential_11.5 bzip2_1.0.5-6 cdbs_0.4.94 coreutils_8.5-1 cpio_2.11-7 cpp_4:4.6.0-5 cpp-4.6_4.6.0-10 dash_0.5.5.1-7.4 debconf_1.5.39 debfoster_2.7-1.1 debhelper_8.1.6 debian-archive-keyring_2010.08.28 debianutils_3.4.4 diffutils_1:3.0-1 dmsetup_2:1.02.63-3 dpatch_2.0.31 dpkg_1.16.0.2 dpkg-dev_1.16.0.2 e2fslibs_1.41.12-4 e2fsprogs_1.41.12-4 fakeroot_1.15.1-1 file_5.04-5+b1 findutils_4.4.2-1+b1 fontconfig_2.8.0-2.2 fontconfig-config_2.8.0-2.2 g++_4:4.6.0-5 g++-4.6_4.6.0-10 gcc_4:4.6.0-5 gcc-4.4-base_4.4.6-3 gcc-4.5-base_4.5.3-1 gcc-4.6_4.6.0-10 gcc-4.6-base_4.6.0-10 gettext_0.18.1.1-3 gettext-base_0.18.1.1-3 gfortran_4:4.6.0-5 gfortran-4.6_4.6.0-10 gnupg_1.4.11-3 gpgv_1.4.11-3 grep_2.6.3-3 groff-base_1.21-5 gzip_1.3.12-9 hostname_3.06 html2text_1.3.2a-15 initscripts_2.88dsf-13.2 insserv_1.14.0-2.1 intltool-debian_0.35.0+20060710.1 libacl1_2.2.49-5 libattr1_1:2.4.44-3 libblas-dev_1.2-8 libblas3gf_1.2-8 libblkid1_2.17.2-9.1 libbz2-1.0_1.0.5-6 libbz2-dev_1.0.5-6 libc-bin_2.13-4 libc-dev-bin_2.13-4 libc6_2.13-4 libc6-dev_2.13-4 libcairo2_1.10.2-6 libcloog-ppl0_0.15.9-3 libcomerr2_1.41.12-4 libcroco3_0.6.2-1 libdatrie1_0.2.4-2 libdb5.1_5.1.25-10 libdevmapper1.02.1_2:1.02.63-3 libdpkg-perl_1.16.0.2 libexpat1_2.0.1-7 libfontconfig1_2.8.0-2.2 libfreetype6_2.4.4-1 libgc1c2_1:7.1-7 libgcc1_1:4.6.0-10 libgdbm3_1.8.3-9 libgfortran3_4.6.0-10 libglib2.0-0_2.28.6-1 libgmp10_2:5.0.1+dfsg-7 libgmpxx4ldbl_2:5.0.1+dfsg-7 libgomp1_4.6.0-10 libice6_2:1.0.7-1 libjpeg62_6b1-1 libjpeg62-dev_6b1-1 liblapack-dev_3.3.0-4 liblapack3gf_3.3.0-4 liblzma2_5.0.0-2 libmagic1_5.04-5+b1 libmpc2_0.9-3 libmpfr4_3.0.1-3 libncurses5_5.9-1 libncurses5-dev_5.9-1 libncursesw5_5.9-1 libpam-modules_1.1.2-3 libpam-runtime_1.1.2-3 libpam0g_1.1.2-3 libpango1.0-0_1.28.3-6 libpaper-utils_1.1.24+nmu1 libpaper1_1.1.24+nmu1 libpcre3_8.12-3 libpcre3-dev_8.12-3 libpcrecpp0_8.12-3 libpipeline1_1.2.0-1 libpixman-1-0_0.21.8-1 libpng12-0_1.2.44-2 libpng12-dev_1.2.44-2 libppl-c4_0.11.2-3 libppl9_0.11.2-3 libpwl5_0.11.2-3 libreadline-dev_6.2-2 libreadline6_6.2-2 libreadline6-dev_6.2-2 libselinux1_2.0.98-1+b1 libsepol1_2.0.42-1 libslang2_2.2.4-2 libsm6_2:1.2.0-1 libss2_1.41.12-4 libstdc++6_4.6.0-10 libstdc++6-4.6-dev_4.6.0-10 libthai-data_0.1.15-1 libthai0_0.1.15-1 libtiff4_3.9.5-1 libtimedate-perl_1.2000-1 libudev0_168-2 libunistring0_0.9.3-4 libusb-0.1-4_2:0.1.12-17 libuuid1_2.17.2-9.1 libx11-6_2:1.4.3-1 libx11-data_2:1.4.3-1 libxau6_1:1.0.6-1 libxcb-render0_1.7-2 libxcb-shm0_1.7-2 libxcb1_1.7-2 libxdmcp6_1:1.1.0-1 libxext6_2:1.3.0-1 libxft2_2.2.0-2 libxml2_2.7.8.dfsg-2+b1 libxrender1_1:0.9.6-1 libxss1_1:1.2.1-1 libxt6_1:1.1.1-1 linux-libc-dev_2.6.38-4 login_1:4.1.4.2+svn3283-3 lsb-base_3.2-27 make_3.81-8.1 man-db_2.6.0.2-1 mawk_1.3.3-15 module-init-tools_3.12-1 mount_2.17.2-9.1 ncurses-base_5.9-1 ncurses-bin_5.9-1 passwd_1:4.1.4.2+svn3283-3 patch_2.6.1-1 perl_5.12.3-7 perl-base_5.12.3-7 perl-modules_5.12.3-7 po-debconf_1.0.16+nmu1 procps_1:3.2.8-10 r-base-core_2.13.0-2 r-base-dev_2.13.0-2 readline-common_6.2-1 sed_4.2.1-9 sensible-utils_0.0.6 sysv-rc_2.88dsf-13.2 sysvinit_2.88dsf-13.2 sysvinit-utils_2.88dsf-13.2 tar_1.25-3 tcl8.5_8.5.9-2 tk8.5_8.5.9-2 ttf-dejavu-core_2.33-1 tzdata_2011g-1 ucf_3.0025+nmu2 udev_168-2 unzip_6.0-4 util-linux_2.17.2-9.1 x11-common_1:7.6+6 xdg-utils_1.1.0~rc1-2 xz-utils_5.0.0-2 zip_3.0-3 zlib1g_1:1.2.3.4.dfsg-3 zlib1g-dev_1:1.2.3.4.dfsg-3
+Kernel: Linux 2.6.39-2-loongson-2e mipsel (mips64)
+Toolchain package versions: binutils_2.21.52.20110606-2 dpkg-dev_1.16.0.3 g++-4.6_4.6.1-6 gcc-4.6_4.6.1-6 libc6-dev_2.13-15 libstdc++6_4.6.1-6 libstdc++6-4.6-dev_4.6.1-6 linux-libc-dev_3.0.0-1
+Package versions: apt_0.8.15.5 base-files_6.5 base-passwd_3.5.23 bash_4.1-3 binutils_2.21.52.20110606-2 binutils-dev_2.21.52.20110606-2 bsdmainutils_8.2.3 bsdutils_1:2.19.1-5 build-essential_11.5 bzip2_1.0.5-6 cdbs_0.4.96 coreutils_8.5-1 cpp_4:4.6.1-2 cpp-4.6_4.6.1-6 dash_0.5.5.1-7.4 debconf_1.5.41 debconf-i18n_1.5.41 debfoster_2.7-1.1 debhelper_8.9.4 debian-archive-keyring_2010.08.28 debianutils_4.0.2 diffutils_1:3.0-1 dpatch_2.0.31 dpkg_1.16.0.3 dpkg-dev_1.16.0.3 e2fslibs_1.42~WIP-2011-07-02-1 e2fsprogs_1.42~WIP-2011-07-02-1 fakeroot_1.16-1 file_5.04-5+b1 findutils_4.4.2-1+b1 fontconfig_2.8.0-3 fontconfig-config_2.8.0-3 g++_4:4.6.1-2 g++-4.6_4.6.1-6 gcc_4:4.6.1-2 gcc-4.4-base_4.4.6-7 gcc-4.5-base_4.5.3-5 gcc-4.6_4.6.1-6 gcc-4.6-base_4.6.1-6 gettext_0.18.1.1-4 gettext-base_0.18.1.1-4 gfortran_4:4.6.1-2 gfortran-4.6_4.6.1-6 gnupg_1.4.11-3 gpgv_1.4.11-3 grep_2.9-1 groff-base_1.21-6 gzip_1.4-1 hostname_3.06 html2text_1.3.2a-15 initscripts_2.88dsf-13.11 insserv_1.14.0-2.1 intltool-debian_0.35.0+20060710.1 libacl1_2.2.51-3 libattr1_1:2.4.46-3 libblas-dev_1.2.20110419-2 libblas3gf_1.2.20110419-2 libblkid1_2.19.1-5 libbz2-1.0_1.0.5-6 libbz2-dev_1.0.5-6 libc-bin_2.13-15 libc-dev-bin_2.13-15 libc6_2.13-15 libc6-dev_2.13-15 libcairo2_1.10.2-6.1 libcloog-ppl0_0.15.9-3 libcomerr2_1.42~WIP-2011-07-02-1 libcroco3_0.6.2-1 libdatrie1_0.2.4-3 libdb5.1_5.1.25-11 libdpkg-perl_1.16.0.3 libexpat1_2.0.1-7 libfontconfig1_2.8.0-3 libfreetype6_2.4.6-1 libgc1c2_1:7.1-8 libgcc1_1:4.6.1-6 libgdbm3_1.8.3-10 libgfortran3_4.6.1-6 libglib2.0-0_2.28.6-1 libgmp10_2:5.0.1+dfsg-7 libgmpxx4ldbl_2:5.0.1+dfsg-7 libgomp1_4.6.1-6 libice6_2:1.0.7-2 libjpeg62_6b1-2 libjpeg8_8c-2 libjpeg8-dev_8c-2 liblapack-dev_3.3.1-1 liblapack3gf_3.3.1-1 liblocale-gettext-perl_1.05-7 liblzma2_5.0.0-2 libmagic1_5.04-5+b1 libmount1_2.19.1-5 libmpc2_0.9-3 libmpfr4_3.0.1-5 libncurses5_5.9-1 libncurses5-dev_5.9-1 libpam-modules_1.1.3-2 libpam-modules-bin_1.1.3-2 libpam-runtime_1.1.3-2 libpam0g_1.1.3-2 libpango1.0-0_1.28.4-2 libpaper-utils_1.1.24+nmu1 libpaper1_1.1.24+nmu1 libpcre3_8.12-4 libpcre3-dev_8.12-4 libpcrecpp0_8.12-4 libpipeline1_1.2.0-3 libpixman-1-0_0.22.2-1 libpng12-0_1.2.46-3 libpng12-dev_1.2.46-3 libppl-c4_0.11.2-4 libppl9_0.11.2-4 libpwl5_0.11.2-4 libreadline-dev_6.2-2 libreadline6_6.2-2 libreadline6-dev_6.2-2 libselinux1_2.0.98-1.1 libsepol1_2.0.42-1 libslang2_2.2.4-2 libsm6_2:1.2.0-2 libss2_1.42~WIP-2011-07-02-1 libstdc++6_4.6.1-6 libstdc++6-4.6-dev_4.6.1-6 libtext-charwidth-perl_0.04-7 libtext-iconv-perl_1.7-4 libtext-wrapi18n-perl_0.06-7 libthai-data_0.1.15-2 libthai0_0.1.15-2 libtiff4_3.9.5-1 libtimedate-perl_1.2000-1 libunistring0_0.9.3-4 libusb-0.1-4_2:0.1.12-18 libuuid1_2.19.1-5 libx11-6_2:1.4.4-1 libx11-data_2:1.4.4-1 libxau6_1:1.0.6-3 libxcb-render0_1.7-3 libxcb-shm0_1.7-3 libxcb1_1.7-3 libxdmcp6_1:1.1.0-3 libxext6_2:1.3.0-3 libxft2_2.2.0-3 libxml2_2.7.8.dfsg-4 libxrender1_1:0.9.6-2 libxss1_1:1.2.1-2 libxt6_1:1.1.1-2 linux-libc-dev_3.0.0-1 login_1:4.1.4.2+svn3283-3 lsb-base_3.2-27 make_3.81-8.1 man-db_2.6.0.2-2 mawk_1.3.3-15 mount_2.19.1-5 multiarch-support_2.13-15 ncurses-base_5.9-1 ncurses-bin_5.9-1 passwd_1:4.1.4.2+svn3283-3 patch_2.6.1-2 perl_5.12.4-2 perl-base_5.12.4-2 perl-modules_5.12.4-2 po-debconf_1.0.16+nmu1 r-base-core_2.13.1-1 r-base-dev_2.13.1-1 readline-common_6.2-2 sed_4.2.1-9 sensible-utils_0.0.6 sudo_1.7.4p6-1 sysv-rc_2.88dsf-13.11 sysvinit_2.88dsf-13.11 sysvinit-utils_2.88dsf-13.11 tar_1.25-3 tcl8.5_8.5.10-1 tk8.5_8.5.10-1 ttf-dejavu-core_2.33-1 tzdata_2011h-3 ucf_3.0025+nmu2 unzip_6.0-5 util-linux_2.19.1-5 x11-common_1:7.6+7 xdg-utils_1.1.0~rc1-2 xz-utils_5.0.0-2 zip_3.0-4 zlib1g_1:1.2.3.4.dfsg-3 zlib1g-dev_1:1.2.3.4.dfsg-3
┌──────────────────────────────────────────────────────────────────────────────┐
│ Build │
@@ -1306,14 +1420,13 @@ Package versions: apt_0.8.14.1 base-files_6.3 base-passwd_3.5.22 bash_4.1-3 binu
Unpack source
─────────────
-Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/Source/Package.pm line 258.
gpgv: keyblock resource `/home/buildd/.gnupg/trustedkeys.gpg': file open error
-gpgv: Signature made Thu Jun 2 04:18:41 2011 UTC using RSA key ID 2295D502
+gpgv: Signature made Sun Aug 14 11:36:35 2011 UTC using RSA key ID 2295D502
gpgv: Can't check signature: public key not found
-dpkg-source: warning: failed to verify signature on ./r-bioc-limma_3.8.2-1.dsc
-dpkg-source: info: extracting r-bioc-limma in r-bioc-limma-3.8.2
-dpkg-source: info: unpacking r-bioc-limma_3.8.2.orig.tar.gz
-dpkg-source: info: applying r-bioc-limma_3.8.2-1.diff.gz
+dpkg-source: warning: failed to verify signature on ./r-bioc-limma_3.8.3-1.dsc
+dpkg-source: info: extracting r-bioc-limma in r-bioc-limma-3.8.3
+dpkg-source: info: unpacking r-bioc-limma_3.8.3.orig.tar.gz
+dpkg-source: info: applying r-bioc-limma_3.8.3-1.diff.gz
Check disc space
────────────────
@@ -1322,33 +1435,24 @@ Check disc space
dpkg-buildpackage
─────────────────
-Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
dpkg-buildpackage: export CFLAGS from dpkg-buildflags (origin: vendor): -g -O2
dpkg-buildpackage: export CPPFLAGS from dpkg-buildflags (origin: vendor):
dpkg-buildpackage: export CXXFLAGS from dpkg-buildflags (origin: vendor): -g -O2
dpkg-buildpackage: export FFLAGS from dpkg-buildflags (origin: vendor): -g -O2
dpkg-buildpackage: export LDFLAGS from dpkg-buildflags (origin: vendor):
dpkg-buildpackage: source package r-bioc-limma
-dpkg-buildpackage: source version 3.8.2-1
- dpkg-source --before-build r-bioc-limma-3.8.2
+dpkg-buildpackage: source version 3.8.3-1
+ dpkg-source --before-build r-bioc-limma-3.8.3
dpkg-buildpackage: host architecture mipsel
fakeroot debian/rules clean
-Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
-Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
-Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
-Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
test -x debian/rules
dh_testroot
/usr/bin/make -f debian/rules reverse-config
-Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
-Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
-Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
-Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
-make[1]: Entering directory `/build/buildd-r-bioc-limma_3.8.2-1-mipsel-moivXA/r-bioc-limma-3.8.2'
+make[1]: Entering directory `/build/buildd-r-bioc-limma_3.8.3-1-mipsel-srTuXk/r-bioc-limma-3.8.3'
make[1]: Nothing to be done for `reverse-config'.
-make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.8.2-1-mipsel-moivXA/r-bioc-limma-3.8.2'
+make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.8.3-1-mipsel-srTuXk/r-bioc-limma-3.8.3'
if [ "reverse-patches" = "reverse-patches" ]; then rm -f debian/stamp-patched; fi
patches:
if [ "reverse-patches" != "reverse-patches" ]; then touch debian/stamp-patched; fi
@@ -1365,41 +1469,25 @@ if test -d src; then \
fi
rm -f config.log config.status
debian/rules build
-Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
-Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
-Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
-Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
test -x debian/rules
mkdir -p "."
/usr/bin/make -f debian/rules reverse-config
-Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
-Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
-Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
-Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
-make[1]: Entering directory `/build/buildd-r-bioc-limma_3.8.2-1-mipsel-moivXA/r-bioc-limma-3.8.2'
+make[1]: Entering directory `/build/buildd-r-bioc-limma_3.8.3-1-mipsel-srTuXk/r-bioc-limma-3.8.3'
make[1]: Nothing to be done for `reverse-config'.
-make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.8.2-1-mipsel-moivXA/r-bioc-limma-3.8.2'
+make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.8.3-1-mipsel-srTuXk/r-bioc-limma-3.8.3'
if [ "debian/stamp-patched" = "reverse-patches" ]; then rm -f debian/stamp-patched; fi
patches:
if [ "debian/stamp-patched" != "reverse-patches" ]; then touch debian/stamp-patched; fi
if [ "debian/stamp-patched" != "reverse-patches" ] ; then \
/usr/bin/make -f debian/rules update-config ; \
fi
-Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
-Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
-Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
-Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
-make[1]: Entering directory `/build/buildd-r-bioc-limma_3.8.2-1-mipsel-moivXA/r-bioc-limma-3.8.2'
+make[1]: Entering directory `/build/buildd-r-bioc-limma_3.8.3-1-mipsel-srTuXk/r-bioc-limma-3.8.3'
make[1]: Nothing to be done for `update-config'.
-make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.8.2-1-mipsel-moivXA/r-bioc-limma-3.8.2'
+make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.8.3-1-mipsel-srTuXk/r-bioc-limma-3.8.3'
fakeroot debian/rules binary-arch
-Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
-Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
-Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
-Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
test -x debian/rules
dh_testroot
@@ -1408,24 +1496,24 @@ dh_installdirs -A
mkdir -p "."
dh_installdirs usr/lib/R/site-library
if test -f /usr/bin/xvfb-run; then \
- xvfb-run \
- R CMD INSTALL -l /build/buildd-r-bioc-limma_3.8.2-1-mipsel-moivXA/r-bioc-limma-3.8.2/debian/r-bioc-limma/usr/lib/R/site-library --clean \
+ xvfb-run -a \
+ R CMD INSTALL -l /build/buildd-r-bioc-limma_3.8.3-1-mipsel-srTuXk/r-bioc-limma-3.8.3/debian/r-bioc-limma/usr/lib/R/site-library --clean \
. ; \
else \
- R CMD INSTALL -l /build/buildd-r-bioc-limma_3.8.2-1-mipsel-moivXA/r-bioc-limma-3.8.2/debian/r-bioc-limma/usr/lib/R/site-library \
+ R CMD INSTALL -l /build/buildd-r-bioc-limma_3.8.3-1-mipsel-srTuXk/r-bioc-limma-3.8.3/debian/r-bioc-limma/usr/lib/R/site-library \
--clean . ;\
fi
* installing *source* package 'limma' ...
** libs
-make[1]: Entering directory `/build/buildd-r-bioc-limma_3.8.2-1-mipsel-moivXA/r-bioc-limma-3.8.2/src'
+make[1]: Entering directory `/build/buildd-r-bioc-limma_3.8.3-1-mipsel-srTuXk/r-bioc-limma-3.8.3/src'
gcc -I/usr/share/R/include -fpic -std=gnu99 -g0 -g -c normexp.c -o normexp.o
normexp.c: In function 'fit_saddle_nelder_mead':
normexp.c:153:3: warning: floating constant exceeds range of 'double' [-Woverflow]
gcc -shared -o limma.so normexp.o -L/usr/lib/R/lib -lR
-make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.8.2-1-mipsel-moivXA/r-bioc-limma-3.8.2/src'
-make[1]: Entering directory `/build/buildd-r-bioc-limma_3.8.2-1-mipsel-moivXA/r-bioc-limma-3.8.2/src'
-make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.8.2-1-mipsel-moivXA/r-bioc-limma-3.8.2/src'
-installing to /build/buildd-r-bioc-limma_3.8.2-1-mipsel-moivXA/r-bioc-limma-3.8.2/debian/r-bioc-limma/usr/lib/R/site-library/limma/libs
+make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.8.3-1-mipsel-srTuXk/r-bioc-limma-3.8.3/src'
+make[1]: Entering directory `/build/buildd-r-bioc-limma_3.8.3-1-mipsel-srTuXk/r-bioc-limma-3.8.3/src'
+make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.8.3-1-mipsel-srTuXk/r-bioc-limma-3.8.3/src'
+installing to /build/buildd-r-bioc-limma_3.8.3-1-mipsel-srTuXk/r-bioc-limma-3.8.3/debian/r-bioc-limma/usr/lib/R/site-library/limma/libs
** R
** inst
** preparing package for lazy loading
@@ -1435,17 +1523,17 @@ installing to /build/buildd-r-bioc-limma_3.8.2-1-mipsel-moivXA/r-bioc-limma-3.8.
** testing if installed package can be loaded
* DONE (limma)
-rm -vf /build/buildd-r-bioc-limma_3.8.2-1-mipsel-moivXA/r-bioc-limma-3.8.2/debian/r-bioc-limma/usr/lib/R/site-library/R.css \
- /build/buildd-r-bioc-limma_3.8.2-1-mipsel-moivXA/r-bioc-limma-3.8.2/debian/r-bioc-limma/usr/lib/R/site-library/limma/COPYING \
- /build/buildd-r-bioc-limma_3.8.2-1-mipsel-moivXA/r-bioc-limma-3.8.2/debian/r-bioc-limma/usr/lib/R/site-library/limma/LICENSE.txt
+rm -vf /build/buildd-r-bioc-limma_3.8.3-1-mipsel-srTuXk/r-bioc-limma-3.8.3/debian/r-bioc-limma/usr/lib/R/site-library/R.css \
+ /build/buildd-r-bioc-limma_3.8.3-1-mipsel-srTuXk/r-bioc-limma-3.8.3/debian/r-bioc-limma/usr/lib/R/site-library/limma/COPYING \
+ /build/buildd-r-bioc-limma_3.8.3-1-mipsel-srTuXk/r-bioc-limma-3.8.3/debian/r-bioc-limma/usr/lib/R/site-library/limma/LICENSE.txt
if test -f debian/overrides; then \
- install -d /build/buildd-r-bioc-limma_3.8.2-1-mipsel-moivXA/r-bioc-limma-3.8.2/debian/r-bioc-limma/usr/share/lintian/overrides ; \
+ install -d /build/buildd-r-bioc-limma_3.8.3-1-mipsel-srTuXk/r-bioc-limma-3.8.3/debian/r-bioc-limma/usr/share/lintian/overrides ; \
install -m 0644 debian/overrides \
- /build/buildd-r-bioc-limma_3.8.2-1-mipsel-moivXA/r-bioc-limma-3.8.2/debian/r-bioc-limma/usr/share/lintian/overrides/r-bioc-limma; \
+ /build/buildd-r-bioc-limma_3.8.3-1-mipsel-srTuXk/r-bioc-limma-3.8.3/debian/r-bioc-limma/usr/share/lintian/overrides/r-bioc-limma; \
fi
Adding cdbs dependencies to debian/r-bioc-limma.substvars
dh_installdirs -pr-bioc-limma
-echo "R:Depends=r-base-core (>= 2.13.0~)" >> debian/r-bioc-limma.substvars
+echo "R:Depends=r-base-core (>= 2.13.1~)" >> debian/r-bioc-limma.substvars
dh_installdocs -pr-bioc-limma
dh_installexamples -pr-bioc-limma
dh_installman -pr-bioc-limma
@@ -1477,58 +1565,58 @@ dh_shlibdeps -pr-bioc-limma
dh_gencontrol -pr-bioc-limma
dh_md5sums -pr-bioc-limma
dh_builddeb -pr-bioc-limma
-dpkg-deb: building package `r-bioc-limma' in `../r-bioc-limma_3.8.2-1_mipsel.deb'.
- dpkg-genchanges -B -mmipsel Build Daemon (mayer) <buildd_mips-mayer at buildd.debian.org> >../r-bioc-limma_3.8.2-1_mipsel.changes
+dpkg-deb: building package `r-bioc-limma' in `../r-bioc-limma_3.8.3-1_mipsel.deb'.
+ dpkg-genchanges -B -mmipsel Build Daemon (monteverdi) <buildd_mipsel-monteverdi at buildd.debian.org> >../r-bioc-limma_3.8.3-1_mipsel.changes
dpkg-genchanges: arch-specific upload - not including arch-independent packages
dpkg-genchanges: binary-only upload - not including any source code
- dpkg-source --after-build r-bioc-limma-3.8.2
+ dpkg-source --after-build r-bioc-limma-3.8.3
dpkg-buildpackage: binary only upload (no source included)
────────────────────────────────────────────────────────────────────────────────
-Build finished at 20110602-1456
+Build finished at 20110814-1223
-r-bioc-limma_3.8.2-1_mipsel.changes:
+r-bioc-limma_3.8.3-1_mipsel.changes:
Format: 1.8
-Date: Thu, 02 Jun 2011 13:07:58 +0900
+Date: Sun, 14 Aug 2011 20:30:21 +0900
Source: r-bioc-limma
Binary: r-bioc-limma
Architecture: mipsel
-Version: 3.8.2-1
+Version: 3.8.3-1
Distribution: sid
Urgency: low
-Maintainer: mipsel Build Daemon (mayer) <buildd_mips-mayer at buildd.debian.org>
+Maintainer: mipsel Build Daemon (monteverdi) <buildd_mipsel-monteverdi at buildd.debian.org>
Changed-By: Charles Plessy <plessy at debian.org>
Description:
r-bioc-limma - linear models for microarray data
-Closes: 628548
Changes:
- r-bioc-limma (3.8.2-1) unstable; urgency=low
+ r-bioc-limma (3.8.3-1) unstable; urgency=low
.
- * Initial release (closes: #628548).
+ * New upstream release.
+ * [e891bb6b] Corrected VCS-Git url.
Checksums-Sha1:
- 8d7ceca74471012a8fa7e0007e480d191902fd7e 1394492 r-bioc-limma_3.8.2-1_mipsel.deb
+ 8f92784a8880ea765d8e8174f3d0a82bd7f2272c 1399324 r-bioc-limma_3.8.3-1_mipsel.deb
Checksums-Sha256:
- eea27353a6da5b2efc3ca142b982d098d9a625b2ca0a17011809ba896d740c34 1394492 r-bioc-limma_3.8.2-1_mipsel.deb
+ 5bc27d90999dd24ed3c422482db4f1c7dc5302af6e9b862a4000125b1af88b66 1399324 r-bioc-limma_3.8.3-1_mipsel.deb
Files:
- 35d3a73acc9fbca7ad144743315168ef 1394492 gnu-r optional r-bioc-limma_3.8.2-1_mipsel.deb
+ c79c6f2720e8d5a2013548df9e0debc7 1399324 gnu-r optional r-bioc-limma_3.8.3-1_mipsel.deb
┌──────────────────────────────────────────────────────────────────────────────┐
│ Package contents │
└──────────────────────────────────────────────────────────────────────────────┘
-r-bioc-limma_3.8.2-1_mipsel.deb
+r-bioc-limma_3.8.3-1_mipsel.deb
───────────────────────────────
new debian package, version 2.0.
- size 1394492 bytes: control archive= 1510 bytes.
+ size 1399324 bytes: control archive= 1513 bytes.
768 bytes, 16 lines control
2226 bytes, 29 lines md5sums
Package: r-bioc-limma
- Version: 3.8.2-1
+ Version: 3.8.3-1
Architecture: mipsel
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
Installed-Size: 1676
- Depends: libc6 (>= 2.2), r-base-core (>= 2.13.0~)
+ Depends: libc6 (>= 2.2), r-base-core (>= 2.13.1~)
Section: gnu-r
Priority: optional
Homepage: http://bioinf.wehi.edu.au/limma/
@@ -1540,50 +1628,50 @@ r-bioc-limma_3.8.2-1_mipsel.deb
apply to all array platforms and treat Affymetrix, single channel and two
channel experiments in a unified way.
-drwxr-xr-x root/root 0 2011-06-02 14:56 ./
-drwxr-xr-x root/root 0 2011-06-02 14:56 ./usr/
-drwxr-xr-x root/root 0 2011-06-02 14:55 ./usr/lib/
-drwxr-xr-x root/root 0 2011-06-02 14:55 ./usr/lib/R/
-drwxr-xr-x root/root 0 2011-06-02 14:56 ./usr/lib/R/site-library/
-drwxr-xr-x root/root 0 2011-06-02 14:55 ./usr/lib/R/site-library/limma/
--rw-r--r-- root/root 1872 2011-06-02 14:55 ./usr/lib/R/site-library/limma/NAMESPACE
--rw-r--r-- root/root 1010 2011-06-02 14:55 ./usr/lib/R/site-library/limma/DESCRIPTION
-drwxr-xr-x root/root 0 2011-06-02 14:55 ./usr/lib/R/site-library/limma/Meta/
--rw-r--r-- root/root 1053 2011-06-02 14:55 ./usr/lib/R/site-library/limma/Meta/package.rds
--rw-r--r-- root/root 5946 2011-06-02 14:55 ./usr/lib/R/site-library/limma/Meta/Rd.rds
--rw-r--r-- root/root 5522 2011-06-02 14:55 ./usr/lib/R/site-library/limma/Meta/hsearch.rds
--rw-r--r-- root/root 2853 2011-06-02 14:55 ./usr/lib/R/site-library/limma/Meta/links.rds
--rw-r--r-- root/root 217 2011-06-02 14:55 ./usr/lib/R/site-library/limma/Meta/vignette.rds
--rw-r--r-- root/root 503 2011-06-02 14:55 ./usr/lib/R/site-library/limma/Meta/nsInfo.rds
-drwxr-xr-x root/root 0 2011-06-02 14:56 ./usr/lib/R/site-library/limma/libs/
--rw-r--r-- root/root 10704 2011-06-02 14:56 ./usr/lib/R/site-library/limma/libs/limma.so
-drwxr-xr-x root/root 0 2011-06-02 14:55 ./usr/lib/R/site-library/limma/R/
--rw-r--r-- root/root 384 2011-06-02 14:55 ./usr/lib/R/site-library/limma/R/limma
--rw-r--r-- root/root 172730 2011-06-02 14:55 ./usr/lib/R/site-library/limma/R/limma.rdb
--rw-r--r-- root/root 3737 2011-06-02 14:55 ./usr/lib/R/site-library/limma/R/limma.rdx
-drwxr-xr-x root/root 0 2011-06-02 14:55 ./usr/lib/R/site-library/limma/doc/
--rwxr-xr-x root/root 84633 2011-06-02 14:55 ./usr/lib/R/site-library/limma/doc/changelog.txt
--rwxr-xr-x root/root 673 2011-06-02 14:55 ./usr/lib/R/site-library/limma/doc/index.html
--rwxr-xr-x root/root 1711 2011-06-02 14:55 ./usr/lib/R/site-library/limma/doc/limma.Rnw
--rw-r--r-- root/root 45616 2011-06-02 14:55 ./usr/lib/R/site-library/limma/doc/limma.pdf
--rw-r--r-- root/root 687780 2011-06-02 14:55 ./usr/lib/R/site-library/limma/doc/usersguide.pdf
--rwxr-xr-x root/root 1230 2011-06-02 14:55 ./usr/lib/R/site-library/limma/CITATION
-drwxr-xr-x root/root 0 2011-06-02 14:55 ./usr/lib/R/site-library/limma/help/
--rw-r--r-- root/root 1344 2011-06-02 14:55 ./usr/lib/R/site-library/limma/help/paths.rds
--rw-r--r-- root/root 449906 2011-06-02 14:55 ./usr/lib/R/site-library/limma/help/limma.rdb
--rw-r--r-- root/root 3252 2011-06-02 14:55 ./usr/lib/R/site-library/limma/help/limma.rdx
--rw-r--r-- root/root 6150 2011-06-02 14:55 ./usr/lib/R/site-library/limma/help/AnIndex
--rw-r--r-- root/root 2361 2011-06-02 14:55 ./usr/lib/R/site-library/limma/help/aliases.rds
-drwxr-xr-x root/root 0 2011-06-02 14:55 ./usr/lib/R/site-library/limma/html/
--rw-r--r-- root/root 34039 2011-06-02 14:55 ./usr/lib/R/site-library/limma/html/00Index.html
--rw-r--r-- root/root 1179 2011-06-02 14:55 ./usr/lib/R/site-library/limma/html/R.css
--rw-r--r-- root/root 9360 2011-06-02 14:55 ./usr/lib/R/site-library/limma/INDEX
-drwxr-xr-x root/root 0 2011-06-02 14:56 ./usr/share/
-drwxr-xr-x root/root 0 2011-06-02 14:56 ./usr/share/doc/
-drwxr-xr-x root/root 0 2011-06-02 14:56 ./usr/share/doc/r-bioc-limma/
--rw-r--r-- root/root 2116 2011-06-02 14:54 ./usr/share/doc/r-bioc-limma/copyright
--rw-r--r-- root/root 25983 2011-05-20 04:14 ./usr/share/doc/r-bioc-limma/changelog.gz
--rw-r--r-- root/root 161 2011-06-02 14:54 ./usr/share/doc/r-bioc-limma/changelog.Debian.gz
+drwxr-xr-x root/root 0 2011-08-14 12:23 ./
+drwxr-xr-x root/root 0 2011-08-14 12:23 ./usr/
+drwxr-xr-x root/root 0 2011-08-14 12:22 ./usr/lib/
+drwxr-xr-x root/root 0 2011-08-14 12:22 ./usr/lib/R/
+drwxr-xr-x root/root 0 2011-08-14 12:23 ./usr/lib/R/site-library/
+drwxr-xr-x root/root 0 2011-08-14 12:22 ./usr/lib/R/site-library/limma/
+drwxr-xr-x root/root 0 2011-08-14 12:22 ./usr/lib/R/site-library/limma/doc/
+-rwxr-xr-x root/root 673 2011-08-14 12:22 ./usr/lib/R/site-library/limma/doc/index.html
+-rw-r--r-- root/root 687780 2011-08-14 12:22 ./usr/lib/R/site-library/limma/doc/usersguide.pdf
+-rw-r--r-- root/root 45616 2011-08-14 12:22 ./usr/lib/R/site-library/limma/doc/limma.pdf
+-rwxr-xr-x root/root 84899 2011-08-14 12:22 ./usr/lib/R/site-library/limma/doc/changelog.txt
+-rwxr-xr-x root/root 1711 2011-08-14 12:22 ./usr/lib/R/site-library/limma/doc/limma.Rnw
+drwxr-xr-x root/root 0 2011-08-14 12:22 ./usr/lib/R/site-library/limma/html/
+-rw-r--r-- root/root 34039 2011-08-14 12:22 ./usr/lib/R/site-library/limma/html/00Index.html
+-rw-r--r-- root/root 1179 2011-08-14 12:22 ./usr/lib/R/site-library/limma/html/R.css
+drwxr-xr-x root/root 0 2011-08-14 12:23 ./usr/lib/R/site-library/limma/libs/
+-rw-r--r-- root/root 10704 2011-08-14 12:23 ./usr/lib/R/site-library/limma/libs/limma.so
+drwxr-xr-x root/root 0 2011-08-14 12:22 ./usr/lib/R/site-library/limma/help/
+-rw-r--r-- root/root 3258 2011-08-14 12:22 ./usr/lib/R/site-library/limma/help/limma.rdx
+-rw-r--r-- root/root 1345 2011-08-14 12:22 ./usr/lib/R/site-library/limma/help/paths.rds
+-rw-r--r-- root/root 6150 2011-08-14 12:22 ./usr/lib/R/site-library/limma/help/AnIndex
+-rw-r--r-- root/root 450060 2011-08-14 12:22 ./usr/lib/R/site-library/limma/help/limma.rdb
+-rw-r--r-- root/root 2363 2011-08-14 12:22 ./usr/lib/R/site-library/limma/help/aliases.rds
+drwxr-xr-x root/root 0 2011-08-14 12:22 ./usr/lib/R/site-library/limma/Meta/
+-rw-r--r-- root/root 2854 2011-08-14 12:22 ./usr/lib/R/site-library/limma/Meta/links.rds
+-rw-r--r-- root/root 217 2011-08-14 12:22 ./usr/lib/R/site-library/limma/Meta/vignette.rds
+-rw-r--r-- root/root 5947 2011-08-14 12:22 ./usr/lib/R/site-library/limma/Meta/Rd.rds
+-rw-r--r-- root/root 5524 2011-08-14 12:22 ./usr/lib/R/site-library/limma/Meta/hsearch.rds
+-rw-r--r-- root/root 505 2011-08-14 12:22 ./usr/lib/R/site-library/limma/Meta/nsInfo.rds
+-rw-r--r-- root/root 1054 2011-08-14 12:22 ./usr/lib/R/site-library/limma/Meta/package.rds
+drwxr-xr-x root/root 0 2011-08-14 12:22 ./usr/lib/R/site-library/limma/R/
+-rw-r--r-- root/root 384 2011-08-14 12:22 ./usr/lib/R/site-library/limma/R/limma
+-rw-r--r-- root/root 3743 2011-08-14 12:22 ./usr/lib/R/site-library/limma/R/limma.rdx
+-rw-r--r-- root/root 173272 2011-08-14 12:22 ./usr/lib/R/site-library/limma/R/limma.rdb
+-rw-r--r-- root/root 1872 2011-08-14 12:22 ./usr/lib/R/site-library/limma/NAMESPACE
+-rw-r--r-- root/root 9360 2011-08-14 12:22 ./usr/lib/R/site-library/limma/INDEX
+-rw-r--r-- root/root 1010 2011-08-14 12:22 ./usr/lib/R/site-library/limma/DESCRIPTION
+-rwxr-xr-x root/root 1230 2011-08-14 12:22 ./usr/lib/R/site-library/limma/CITATION
+drwxr-xr-x root/root 0 2011-08-14 12:23 ./usr/share/
+drwxr-xr-x root/root 0 2011-08-14 12:23 ./usr/share/doc/
+drwxr-xr-x root/root 0 2011-08-14 12:23 ./usr/share/doc/r-bioc-limma/
+-rw-r--r-- root/root 26050 2011-08-08 16:14 ./usr/share/doc/r-bioc-limma/changelog.gz
+-rw-r--r-- root/root 2117 2011-08-14 12:21 ./usr/share/doc/r-bioc-limma/copyright
+-rw-r--r-- root/root 234 2011-08-14 12:21 ./usr/share/doc/r-bioc-limma/changelog.Debian.gz
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -1597,145 +1685,26 @@ Built successfully
│ Post Build │
└──────────────────────────────────────────────────────────────────────────────┘
-Purging /var/lib/schroot/mount/sid-mipsel-sbuild-79d9ad21-7925-4dc2-83b6-ba7403333e27/build/buildd-r-bioc-limma_3.8.2-1-mipsel-moivXA
-Reading package lists...
-Building dependency tree...
-Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 15 not upgraded.
-Reading package lists...
-Building dependency tree...
-Reading state information...
-The following packages will be REMOVED:
- cdbs* dpatch* fontconfig* fontconfig-config* gfortran* gfortran-4.6*
- libblas-dev* libblas3gf* libbz2-dev* libcairo2* libdatrie1* libexpat1*
- libfontconfig1* libfreetype6* libgfortran3* libice6* libjpeg62*
- libjpeg62-dev* liblapack-dev* liblapack3gf* libncurses5-dev* libpango1.0-0*
- libpaper-utils* libpaper1* libpcre3-dev* libpcrecpp0* libpixman-1-0*
- libpng12-0* libpng12-dev* libreadline-dev* libreadline6-dev* libsm6*
- libthai-data* libthai0* libtiff4* libx11-6* libx11-data* libxau6*
- libxcb-render0* libxcb-shm0* libxcb1* libxdmcp6* libxext6* libxft2*
- libxrender1* libxss1* libxt6* r-base-core* r-base-dev* tcl8.5* tk8.5*
- ttf-dejavu-core* ucf* unzip* x11-common* xdg-utils* zip* zlib1g-dev*
-0 upgraded, 0 newly installed, 58 to remove and 15 not upgraded.
-After this operation, 98.3 MB disk space will be freed.
-(Reading database ... 14873 files and directories currently installed.)
-Removing r-base-dev ...
-Removing cdbs ...
-Removing dpatch ...
-Purging configuration files for dpatch ...
-Removing r-base-core ...
-Purging configuration files for r-base-core ...
-Removing libpango1.0-0 ...
-Purging configuration files for libpango1.0-0 ...
-Removing fontconfig ...
-Purging configuration files for fontconfig ...
-Removing tk8.5 ...
-Purging configuration files for tk8.5 ...
-Removing libxft2 ...
-Purging configuration files for libxft2 ...
-Removing libcairo2 ...
-Purging configuration files for libcairo2 ...
-Removing libfontconfig1 ...
-Purging configuration files for libfontconfig1 ...
-Removing fontconfig-config ...
-Purging configuration files for fontconfig-config ...
-Removing gfortran ...
-Removing gfortran-4.6 ...
-Removing liblapack-dev ...
-Removing libblas-dev ...
-Removing liblapack3gf ...
-Purging configuration files for liblapack3gf ...
-Removing libblas3gf ...
-Purging configuration files for libblas3gf ...
-Removing libbz2-dev ...
-Removing libthai0 ...
-Purging configuration files for libthai0 ...
-Removing libdatrie1 ...
-Purging configuration files for libdatrie1 ...
-Removing libexpat1 ...
-Purging configuration files for libexpat1 ...
-Removing libfreetype6 ...
-Purging configuration files for libfreetype6 ...
-Removing libgfortran3 ...
-Purging configuration files for libgfortran3 ...
-Removing libxt6 ...
-Purging configuration files for libxt6 ...
-Removing libsm6 ...
-Purging configuration files for libsm6 ...
-Removing libice6 ...
-Purging configuration files for libice6 ...
-Removing libtiff4 ...
-Purging configuration files for libtiff4 ...
-Removing libjpeg62-dev ...
-Removing libjpeg62 ...
-Removing libreadline-dev ...
-Removing libreadline6-dev ...
-Removing libncurses5-dev ...
-Removing libpaper-utils ...
-Removing libpaper1 ...
-Purging configuration files for libpaper1 ...
-Removing libpcre3-dev ...
-Removing libpcrecpp0 ...
-Purging configuration files for libpcrecpp0 ...
-Removing libpixman-1-0 ...
-Purging configuration files for libpixman-1-0 ...
-Removing libpng12-dev ...
-Removing libpng12-0 ...
-Purging configuration files for libpng12-0 ...
-Removing libthai-data ...
-Removing libxss1 ...
-Purging configuration files for libxss1 ...
-Removing libxrender1 ...
-Purging configuration files for libxrender1 ...
-Removing libxext6 ...
-Purging configuration files for libxext6 ...
-Removing libx11-6 ...
-Purging configuration files for libx11-6 ...
-Removing libx11-data ...
-Removing libxcb-shm0 ...
-Purging configuration files for libxcb-shm0 ...
-Removing libxcb-render0 ...
-Purging configuration files for libxcb-render0 ...
-Removing libxcb1 ...
-Purging configuration files for libxcb1 ...
-Removing libxau6 ...
-Purging configuration files for libxau6 ...
-Removing libxdmcp6 ...
-Purging configuration files for libxdmcp6 ...
-Removing tcl8.5 ...
-Purging configuration files for tcl8.5 ...
-Removing ttf-dejavu-core ...
-Removing ucf ...
-Purging configuration files for ucf ...
-Removing unzip ...
-Purging configuration files for unzip ...
-Removing x11-common ...
-All runlevel operations denied by policy
-invoke-rc.d: policy-rc.d denied execution of stop.
-Purging configuration files for x11-common ...
-Removing xdg-utils ...
-Removing zip ...
-Removing zlib1g-dev ...
-Processing triggers for man-db ...
+Purging /var/lib/schroot/mount/sid-mipsel-sbuild-e35022f8-c753-492f-947e-8e272cf2abe5/build/buildd-r-bioc-limma_3.8.3-1-mipsel-srTuXk
+Not cleaning session: cloned chroot in use
┌──────────────────────────────────────────────────────────────────────────────┐
│ Summary │
└──────────────────────────────────────────────────────────────────────────────┘
Architecture: mipsel
-Build-Space: 5076
-Build-Time: 112
+Build-Space: 5080
+Build-Time: 129
Distribution: sid
-Install-Time: 92
-Job: r-bioc-limma_3.8.2-1
+Install-Time: 229
+Job: r-bioc-limma_3.8.3-1
Package: r-bioc-limma
-Package-Time: 223
-Source-Version: 3.8.2-1
-Space: 5076
+Package-Time: 625
+Source-Version: 3.8.3-1
+Space: 5080
Status: successful
-Version: 3.8.2-1
+Version: 3.8.3-1
────────────────────────────────────────────────────────────────────────────────
-Finished at 20110602-1456
-Build needed 00:03:43, 5076k disc space
-Signature with key '68D1B022' requested:
+Finished at 20110814-1223
+Build needed 00:10:25, 5080k disc space
diff --git a/mipsel.log b/mipsel.log
index dcc5e08..1d0e1a2 100644
--- a/mipsel.log
+++ b/mipsel.log
@@ -1,64 +1,62 @@
-From buildd at mayer.debian.org Thu Jun 02 14:57:18 2011
-Return-path: <buildd at mayer.debian.org>
-Received: from merikanto.debian.org ([2001:858:2:2:216:35ff:fec4:a49a])
- from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
- CN=merikanto.debian.org,
- EMAIL=hostmaster at merikanto.debian.org (verified)
+From buildd at monteverdi.ayous.org Sun Aug 14 12:48:59 2011
+Return-path: <buildd at monteverdi.ayous.org>
+Received: from monteverdi.ayous.org ([2001:a60:f006:deb:20a:1ff:fe00:987]
+ helo=alius.ayous.org)
by grieg.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
- (Exim 4.72) (envelope-from <buildd at mayer.debian.org>)
- id 1QS9Kn-0002UQ-ND
- for logs at buildd.debian.org; Thu, 02 Jun 2011 14:57:18 +0000
-Received: from mayer.debian.org ([140.211.166.78])
- from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
- CN=mayer.debian.org, EMAIL=hostmaster at mayer.debian.org (verified)
- by merikanto.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
- (Exim 4.72) (envelope-from <buildd at mayer.debian.org>)
- id 1QS9Kl-00019k-K8
- for logs at buildd.debian.org; Thu, 02 Jun 2011 14:57:16 +0000
-Received: from buildd by mayer.debian.org with local (Exim 4.69)
- (envelope-from <buildd at mayer.debian.org>) id 1QS9Ki-0004MO-B1
- for logs at buildd.debian.org; Thu, 02 Jun 2011 14:57:12 +0000
-From: buildd on mayer <buildd at mayer.debian.org>
-To: logs at buildd.debian.org
-Subject: Log for successful build of r-bioc-limma_3.8.2-1 on mipsel (dist=sid)
+ (Exim 4.72) (envelope-from <buildd at monteverdi.ayous.org>)
+ id 1Qsa7N-0002GC-Hd
+ for logs at buildd.debian.org; Sun, 14 Aug 2011 12:48:59 +0000
+Received: from buildd by monteverdi.ayous.org with local (Exim 4.72)
+ (envelope-from <buildd at monteverdi.ayous.org>)
+ id 1QsZj9-0000UK-II; Sun, 14 Aug 2011 12:23:39 +0000
+Date: Sun, 14 Aug 2011 12:23:39 +0000
+Message-Id: <E1QsZj9-0000UK-II at monteverdi.ayous.org>
+From: buildd on monteverdi <buildd at monteverdi.ayous.org>
+To: aba+buildd_monteverdi at not.so.argh.org,logs at buildd.debian.org
+Subject: Log for successful build of r-bioc-limma_3.8.3-1 on mipsel (dist=sid)
Content-Type: text/plain; charset=UTF-8
Content-Transfer-Encoding: 8bit
-Message-Id: <E1QS9Ki-0004MO-B1 at mayer.debian.org>
-Date: Thu, 02 Jun 2011 14:57:12 +0000
Delivered-To: logs at buildd.debian.org
-sbuild (Debian sbuild) 0.61.0 (23 Feb 2011) on mayer.debian.org
+sbuild (Debian sbuild) 0.61.0 (23 Feb 2011) on monteverdi.ayous.org
╔══════════════════════════════════════════════════════════════════════════════╗
-║ r-bioc-limma 3.8.2-1 (mipsel) 02 Jun 2011 14:52 ║
+║ r-bioc-limma 3.8.3-1 (mipsel) 14 Aug 2011 12:13 ║
╚══════════════════════════════════════════════════════════════════════════════╝
Package: r-bioc-limma
-Version: 3.8.2-1
-Source Version: 3.8.2-1
+Version: 3.8.3-1
+Source Version: 3.8.3-1
Architecture: mipsel
-Hit http://debian.oregonstate.edu sid InRelease
-Hit http://debian.oregonstate.edu sid/main Sources
-Hit http://debian.oregonstate.edu sid/contrib Sources
-Hit http://debian.oregonstate.edu sid/main mipsel Packages
-Hit http://debian.oregonstate.edu sid/contrib mipsel Packages
-Ign http://debian.oregonstate.edu sid/contrib TranslationIndex
-Hit http://debian.oregonstate.edu sid/main TranslationIndex
-Ign http://debian.oregonstate.edu sid/contrib Translation-en
-Hit http://incoming.debian.org sid InRelease
+Ign http://incoming.debian.org unstable InRelease
Ign http://incoming.debian.org InRelease
-Hit http://incoming.debian.org Release.gpg
-Hit http://incoming.debian.org sid/main Sources
-Hit http://incoming.debian.org sid/contrib Sources
-Hit http://incoming.debian.org sid/main mipsel Packages
-Hit http://incoming.debian.org sid/contrib mipsel Packages
-Ign http://incoming.debian.org sid/contrib TranslationIndex
-Hit http://incoming.debian.org sid/main TranslationIndex
-Hit http://incoming.debian.org Release
-Hit http://incoming.debian.org Sources
-Hit http://incoming.debian.org Packages
-Ign http://incoming.debian.org sid/contrib Translation-en
+Ign http://mirror.ayous.org unstable InRelease
+Get:1 http://incoming.debian.org unstable Release.gpg [836 B]
+Get:2 http://mirror.ayous.org unstable Release.gpg [836 B]
+Get:3 http://mirror.ayous.org unstable Release [145 kB]
+Get:4 http://incoming.debian.org Release.gpg [836 B]
+Get:5 http://incoming.debian.org unstable Release [145 kB]
+Ign http://mirror.ayous.org unstable/contrib TranslationIndex
+Get:6 http://mirror.ayous.org unstable/main TranslationIndex [2185 B]
+Get:7 http://mirror.ayous.org unstable/main Sources [6850 kB]
+Get:8 http://incoming.debian.org Release [1604 B]
+Ign http://incoming.debian.org unstable/contrib TranslationIndex
+Get:9 http://incoming.debian.org unstable/main TranslationIndex [2185 B]
+Get:10 http://incoming.debian.org unstable/main Sources [6850 kB]
+Get:11 http://incoming.debian.org unstable/contrib Sources [62.0 kB]
+Get:12 http://incoming.debian.org unstable/non-free Sources [115 kB]
+Get:13 http://incoming.debian.org unstable/main mipsel Packages [9707 kB]
+Get:14 http://mirror.ayous.org unstable/contrib Sources [62.0 kB]
+Get:15 http://mirror.ayous.org unstable/non-free Sources [115 kB]
+Get:16 http://mirror.ayous.org unstable/main mipsel Packages [9707 kB]
+Get:17 http://incoming.debian.org unstable/contrib mipsel Packages [67.0 kB]
+Get:18 http://mirror.ayous.org unstable/contrib mipsel Packages [67.0 kB]
+Ign http://mirror.ayous.org unstable/contrib Translation-en
+Get:19 http://incoming.debian.org Sources [28.7 kB]
+Get:20 http://incoming.debian.org Packages [172 kB]
Ign http://incoming.debian.org Translation-en
+Ign http://incoming.debian.org unstable/contrib Translation-en
+Fetched 34.1 MB in 2min 49s (202 kB/s)
Reading package lists...
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -78,12 +76,12 @@ Reading package lists...
Building dependency tree...
Reading state information...
NOTICE: 'r-bioc-limma' packaging is maintained in the 'Git' version control system at:
-git://anonscm.debian.org/debian-med/r-bioc-limma.git
+git://git.debian.org/git/debian-med/r-bioc-limma.git
Need to get 921 kB of source archives.
-Get:1 http://incoming.debian.org/buildd-unstable/ r-bioc-limma 3.8.2-1 (dsc) [1931 B]
-Get:2 http://incoming.debian.org/buildd-unstable/ r-bioc-limma 3.8.2-1 (tar) [917 kB]
-Get:3 http://incoming.debian.org/buildd-unstable/ r-bioc-limma 3.8.2-1 (diff) [2158 B]
-Fetched 921 kB in 1s (741 kB/s)
+Get:1 http://incoming.debian.org/buildd-unstable/ r-bioc-limma 3.8.3-1 (dsc) [1931 B]
+Get:2 http://incoming.debian.org/buildd-unstable/ r-bioc-limma 3.8.3-1 (tar) [917 kB]
+Get:3 http://incoming.debian.org/buildd-unstable/ r-bioc-limma 3.8.3-1 (diff) [2212 B]
+Fetched 921 kB in 1min 3s (14.6 kB/s)
Download complete and in download only mode
Check arch
@@ -97,18 +95,18 @@ Check arch
Build-Depends: build-essential, fakeroot
Checking for already installed dependencies...
build-essential: already installed (11.5)
-fakeroot: already installed (1.15.1-1)
+fakeroot: already installed (1.16-1)
Checking for dependency conflicts...
Installing positive dependencies:
Reading package lists...
Building dependency tree...
Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 15 not upgraded.
+0 upgraded, 0 newly installed, 0 to remove and 19 not upgraded.
Removing negative dependencies:
Reading package lists...
Building dependency tree...
Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 15 not upgraded.
+0 upgraded, 0 newly installed, 0 to remove and 19 not upgraded.
Checking correctness of dependencies...
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -117,279 +115,463 @@ Checking correctness of dependencies...
Build-Depends: base-files, base-passwd, bash, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, ncurses-base, ncurses-bin, perl-base, sed, login, sysvinit-utils, sysvinit, tar, bsdutils, mount, util-linux, libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 8), cdbs, r-base-dev (>= 2.10.0)
Checking for already installed dependencies...
-base-files: already installed (6.3)
-base-passwd: already installed (3.5.22)
+base-files: already installed (6.5)
+base-passwd: already installed (3.5.23)
bash: already installed (4.1-3)
coreutils: already installed (8.5-1)
dash: already installed (0.5.5.1-7.4)
-debianutils: already installed (3.4.4)
+debianutils: already installed (4.0.2)
diffutils: already installed (1:3.0-1)
-dpkg: already installed (1.16.0.2)
-e2fsprogs: already installed (1.41.12-4)
+dpkg: already installed (1.16.0.3)
+e2fsprogs: already installed (1.42~WIP-2011-07-02-1)
findutils: already installed (4.4.2-1+b1)
-grep: already installed (2.6.3-3)
-gzip: already installed (1.3.12-9)
+grep: already installed (2.9-1)
+gzip: already installed (1.4-1)
hostname: already installed (3.06)
ncurses-base: already installed (5.9-1)
ncurses-bin: already installed (5.9-1)
-perl-base: already installed (5.12.3-7)
+perl-base: already installed (5.12.4-2)
sed: already installed (4.2.1-9)
login: already installed (1:4.1.4.2+svn3283-3)
-sysvinit-utils: already installed (2.88dsf-13.2)
-sysvinit: already installed (2.88dsf-13.2)
+sysvinit-utils: already installed (2.88dsf-13.11)
+sysvinit: already installed (2.88dsf-13.11)
tar: already installed (1.25-3)
-bsdutils: already installed (1:2.17.2-9.1)
-mount: already installed (2.17.2-9.1)
-util-linux: already installed (2.17.2-9.1)
-libc6-dev: already installed (2.13-4)
-gcc: already installed (4:4.6.0-5 >= 4:4.4.3 is satisfied)
-g++: already installed (4:4.6.0-5 >= 4:4.4.3 is satisfied)
+bsdutils: already installed (1:2.19.1-5)
+mount: already installed (2.19.1-5)
+util-linux: already installed (2.19.1-5)
+libc6-dev: already installed (2.13-15)
+gcc: already installed (4:4.6.1-2 >= 4:4.4.3 is satisfied)
+g++: already installed (4:4.6.1-2 >= 4:4.4.3 is satisfied)
make: already installed (3.81-8.1)
-dpkg-dev: already installed (1.16.0.2 >= 1.13.5 is satisfied)
-debhelper: already installed (8.1.6 >= 8 is satisfied)
+dpkg-dev: already installed (1.16.0.3 >= 1.13.5 is satisfied)
+debhelper: missing
+Using default version 8.9.4
cdbs: missing
r-base-dev: missing
-Using default version 2.13.0-2
+Using default version 2.13.1-1
Checking for dependency conflicts...
-Installing positive dependencies: cdbs r-base-dev
+Installing positive dependencies: debhelper cdbs r-base-dev
Reading package lists...
Building dependency tree...
Reading state information...
The following extra packages will be installed:
- dpatch fontconfig fontconfig-config gfortran gfortran-4.6 libblas-dev
- libblas3gf libbz2-dev libcairo2 libdatrie1 libexpat1 libfontconfig1
- libfreetype6 libgfortran3 libice6 libjpeg62 libjpeg62-dev liblapack-dev
- liblapack3gf libncurses5-dev libpango1.0-0 libpaper-utils libpaper1
- libpcre3-dev libpcrecpp0 libpixman-1-0 libpng12-0 libpng12-dev
- libreadline-dev libreadline6-dev libsm6 libthai-data libthai0 libtiff4
- libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6
- libxext6 libxft2 libxrender1 libxss1 libxt6 r-base-core tcl8.5 tk8.5
- ttf-dejavu-core ucf unzip x11-common xdg-utils zip zlib1g-dev
+ bsdmainutils cpp-4.6 dpatch file fontconfig fontconfig-config g++-4.6
+ gcc-4.6 gcc-4.6-base gettext gettext-base gfortran gfortran-4.6 groff-base
+ html2text intltool-debian libblas-dev libblas3gf libbz2-dev libcairo2
+ libcroco3 libdatrie1 libexpat1 libfontconfig1 libfreetype6 libgcc1
+ libgfortran3 libglib2.0-0 libgomp1 libice6 libjpeg62 libjpeg8 libjpeg8-dev
+ liblapack-dev liblapack3gf libmagic1 libncurses5-dev libpango1.0-0
+ libpaper-utils libpaper1 libpcre3 libpcre3-dev libpcrecpp0 libpipeline1
+ libpixman-1-0 libpng12-0 libpng12-dev libreadline-dev libreadline6-dev
+ libsm6 libstdc++6 libstdc++6-4.6-dev libthai-data libthai0 libtiff4
+ libunistring0 libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0
+ libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxrender1 libxss1 libxt6 man-db
+ po-debconf r-base-core tcl8.5 tk8.5 ttf-dejavu-core ucf unzip x11-common
+ xdg-utils zip zlib1g-dev
Suggested packages:
- devscripts curl defoma gfortran-multilib gfortran-doc gfortran-4.6-multilib
- gfortran-4.6-doc libgfortran3-dbg ncurses-doc ttf-baekmuk
+ wamerican wordlist whois vacation devscripts gcc-4.6-locales dh-make curl
+ defoma g++-4.6-multilib gcc-4.6-doc libstdc++6-4.6-dbg gcc-4.6-multilib
+ libmudflap0-4.6-dev libgcc1-dbg libgomp1-dbg libquadmath-dbg libmudflap0-dbg
+ gettext-doc gfortran-multilib gfortran-doc gfortran-4.6-multilib
+ gfortran-4.6-doc libgfortran3-dbg groff ncurses-doc ttf-baekmuk
ttf-arphic-gbsn00lp ttf-arphic-bsmi00lp ttf-arphic-gkai00mp
- ttf-arphic-bkai00mp ess r-doc-info r-doc-pdf r-mathlib r-base-html
- tclreadline gvfs-bin
+ ttf-arphic-bkai00mp libstdc++6-4.6-doc less www-browser libmail-box-perl
+ r-doc-info r-doc-pdf r-mathlib r-base-html tclreadline gvfs-bin
Recommended packages:
- autotools-dev patchutils x-ttcidfont-conf r-recommended r-doc-html xterm
- x-terminal-emulator libfile-mimeinfo-perl x11-utils x11-xserver-utils
+ autotools-dev patchutils autopoint libglib2.0-data shared-mime-info
+ x-ttcidfont-conf xml-core libmail-sendmail-perl r-recommended r-doc-html
+ xterm x-terminal-emulator libfile-mimeinfo-perl x11-utils x11-xserver-utils
The following NEW packages will be installed:
- cdbs dpatch fontconfig fontconfig-config gfortran gfortran-4.6 libblas-dev
- libblas3gf libbz2-dev libcairo2 libdatrie1 libexpat1 libfontconfig1
- libfreetype6 libgfortran3 libice6 libjpeg62 libjpeg62-dev liblapack-dev
- liblapack3gf libncurses5-dev libpango1.0-0 libpaper-utils libpaper1
- libpcre3-dev libpcrecpp0 libpixman-1-0 libpng12-0 libpng12-dev
- libreadline-dev libreadline6-dev libsm6 libthai-data libthai0 libtiff4
+ bsdmainutils cdbs debhelper dpatch file fontconfig fontconfig-config gettext
+ gettext-base gfortran gfortran-4.6 groff-base html2text intltool-debian
+ libblas-dev libblas3gf libbz2-dev libcairo2 libcroco3 libdatrie1 libexpat1
+ libfontconfig1 libfreetype6 libgfortran3 libglib2.0-0 libice6 libjpeg62
+ libjpeg8 libjpeg8-dev liblapack-dev liblapack3gf libmagic1 libncurses5-dev
+ libpango1.0-0 libpaper-utils libpaper1 libpcre3 libpcre3-dev libpcrecpp0
+ libpipeline1 libpixman-1-0 libpng12-0 libpng12-dev libreadline-dev
+ libreadline6-dev libsm6 libthai-data libthai0 libtiff4 libunistring0
libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6
- libxext6 libxft2 libxrender1 libxss1 libxt6 r-base-core r-base-dev tcl8.5
- tk8.5 ttf-dejavu-core ucf unzip x11-common xdg-utils zip zlib1g-dev
+ libxext6 libxft2 libxml2 libxrender1 libxss1 libxt6 man-db po-debconf
+ r-base-core r-base-dev tcl8.5 tk8.5 ttf-dejavu-core ucf unzip x11-common
+ xdg-utils zip zlib1g-dev
+The following packages will be upgraded:
+ cpp-4.6 g++-4.6 gcc-4.6 gcc-4.6-base libgcc1 libgomp1 libstdc++6
+ libstdc++6-4.6-dev
+8 upgraded, 76 newly installed, 0 to remove and 11 not upgraded.
+Need to get 66.9 MB of archives.
+After this operation, 125 MB of additional disk space will be used.
+Get:1 http://mirror.ayous.org/debian/ unstable/main libgomp1 mipsel 4.6.1-6 [26.2 kB]
+Get:2 http://mirror.ayous.org/debian/ unstable/main gcc-4.6-base mipsel 4.6.1-6 [134 kB]
+Get:3 http://mirror.ayous.org/debian/ unstable/main libgcc1 mipsel 1:4.6.1-6 [68.5 kB]
+Get:4 http://mirror.ayous.org/debian/ unstable/main cpp-4.6 mipsel 4.6.1-6 [3750 kB]
+Get:5 http://mirror.ayous.org/debian/ unstable/main libstdc++6-4.6-dev mipsel 4.6.1-6 [1715 kB]
+Get:6 http://mirror.ayous.org/debian/ unstable/main g++-4.6 mipsel 4.6.1-6 [6180 kB]
+Get:7 http://mirror.ayous.org/debian/ unstable/main gcc-4.6 mipsel 4.6.1-6 [4067 kB]
+Get:8 http://mirror.ayous.org/debian/ unstable/main libstdc++6 mipsel 4.6.1-6 [301 kB]
+Get:9 http://mirror.ayous.org/debian/ unstable/main libpipeline1 mipsel 1.2.0-3 [35.7 kB]
+Get:10 http://mirror.ayous.org/debian/ unstable/main libpcre3 mipsel 8.12-4 [227 kB]
+Get:11 http://mirror.ayous.org/debian/ unstable/main libdatrie1 mipsel 0.2.4-3 [27.1 kB]
+Get:12 http://mirror.ayous.org/debian/ unstable/main libexpat1 mipsel 2.0.1-7 [134 kB]
+Get:13 http://mirror.ayous.org/debian/ unstable/main libfreetype6 mipsel 2.4.6-1 [416 kB]
+Get:14 http://mirror.ayous.org/debian/ unstable/main ucf all 3.0025+nmu2 [70.6 kB]
+Get:15 http://mirror.ayous.org/debian/ unstable/main ttf-dejavu-core all 2.33-1 [1550 kB]
+Get:16 http://mirror.ayous.org/debian/ unstable/main fontconfig-config all 2.8.0-3 [221 kB]
+Get:17 http://mirror.ayous.org/debian/ unstable/main libfontconfig1 mipsel 2.8.0-3 [285 kB]
+Get:18 http://mirror.ayous.org/debian/ unstable/main libgfortran3 mipsel 4.6.1-6 [231 kB]
+Get:19 http://mirror.ayous.org/debian/ unstable/main x11-common all 1:7.6+7 [275 kB]
+Get:20 http://mirror.ayous.org/debian/ unstable/main libice6 mipsel 2:1.0.7-2 [49.9 kB]
+Get:21 http://mirror.ayous.org/debian/ unstable/main libpixman-1-0 mipsel 0.22.2-1 [338 kB]
+Get:22 http://mirror.ayous.org/debian/ unstable/main libpng12-0 mipsel 1.2.46-3 [184 kB]
+Get:23 http://mirror.ayous.org/debian/ unstable/main libxau6 mipsel 1:1.0.6-3 [16.6 kB]
+Get:24 http://mirror.ayous.org/debian/ unstable/main libxdmcp6 mipsel 1:1.1.0-3 [22.2 kB]
+Get:25 http://mirror.ayous.org/debian/ unstable/main libxcb1 mipsel 1.7-3 [37.7 kB]
+Get:26 http://mirror.ayous.org/debian/ unstable/main libx11-data all 2:1.4.4-1 [183 kB]
+Get:27 http://mirror.ayous.org/debian/ unstable/main libx11-6 mipsel 2:1.4.4-1 [858 kB]
+Get:28 http://mirror.ayous.org/debian/ unstable/main libxcb-render0 mipsel 1.7-3 [14.5 kB]
+Get:29 http://mirror.ayous.org/debian/ unstable/main libxcb-shm0 mipsel 1.7-3 [9366 B]
+Get:30 http://mirror.ayous.org/debian/ unstable/main libxrender1 mipsel 1:0.9.6-2 [30.2 kB]
+Get:31 http://mirror.ayous.org/debian/ unstable/main libcairo2 mipsel 1.10.2-6.1 [954 kB]
+Get:32 http://mirror.ayous.org/debian/ unstable/main libglib2.0-0 mipsel 2.28.6-1 [1503 kB]
+Get:33 http://mirror.ayous.org/debian/ unstable/main libthai-data all 0.1.15-2 [201 kB]
+Get:34 http://mirror.ayous.org/debian/ unstable/main libthai0 mipsel 0.1.15-2 [41.6 kB]
+Get:35 http://mirror.ayous.org/debian/ unstable/main libxft2 mipsel 2.2.0-3 [56.8 kB]
+Get:36 http://mirror.ayous.org/debian/ unstable/main fontconfig mipsel 2.8.0-3 [334 kB]
+Get:37 http://mirror.ayous.org/debian/ unstable/main libpango1.0-0 mipsel 1.28.4-2 [418 kB]
+Get:38 http://mirror.ayous.org/debian/ unstable/main libpcrecpp0 mipsel 8.12-4 [112 kB]
+Get:39 http://mirror.ayous.org/debian/ unstable/main libsm6 mipsel 2:1.2.0-2 [28.1 kB]
+Get:40 http://mirror.ayous.org/debian/ unstable/main libxext6 mipsel 2:1.3.0-3 [48.8 kB]
+Get:41 http://mirror.ayous.org/debian/ unstable/main libxss1 mipsel 1:1.2.1-2 [16.5 kB]
+Get:42 http://mirror.ayous.org/debian/ unstable/main libxt6 mipsel 1:1.1.1-2 [189 kB]
+Get:43 http://mirror.ayous.org/debian/ unstable/main bsdmainutils mipsel 8.2.3 [208 kB]
+Get:44 http://mirror.ayous.org/debian/ unstable/main groff-base mipsel 1.21-6 [1142 kB]
+Get:45 http://mirror.ayous.org/debian/ unstable/main man-db mipsel 2.6.0.2-2 [986 kB]
+Get:46 http://mirror.ayous.org/debian/ unstable/main libmagic1 mipsel 5.04-5+b1 [238 kB]
+Get:47 http://mirror.ayous.org/debian/ unstable/main file mipsel 5.04-5+b1 [49.9 kB]
+Get:48 http://mirror.ayous.org/debian/ unstable/main gettext-base mipsel 0.18.1.1-4 [133 kB]
+Get:49 http://mirror.ayous.org/debian/ unstable/main libxml2 mipsel 2.7.8.dfsg-4 [858 kB]
+Get:50 http://mirror.ayous.org/debian/ unstable/main html2text mipsel 1.3.2a-15 [103 kB]
+Get:51 http://mirror.ayous.org/debian/ unstable/main libcroco3 mipsel 0.6.2-1 [110 kB]
+Get:52 http://mirror.ayous.org/debian/ unstable/main libunistring0 mipsel 0.9.3-4 [411 kB]
+Get:53 http://mirror.ayous.org/debian/ unstable/main gettext mipsel 0.18.1.1-4 [2008 kB]
+Get:54 http://mirror.ayous.org/debian/ unstable/main intltool-debian all 0.35.0+20060710.1 [30.8 kB]
+Get:55 http://mirror.ayous.org/debian/ unstable/main po-debconf all 1.0.16+nmu1 [223 kB]
+Get:56 http://mirror.ayous.org/debian/ unstable/main debhelper all 8.9.4 [561 kB]
+Get:57 http://mirror.ayous.org/debian/ unstable/main cdbs all 0.4.96 [75.8 kB]
+Get:58 http://mirror.ayous.org/debian/ unstable/main dpatch all 2.0.31 [92.3 kB]
+Get:59 http://mirror.ayous.org/debian/ unstable/main gfortran-4.6 mipsel 4.6.1-6 [4379 kB]
+Get:60 http://mirror.ayous.org/debian/ unstable/main gfortran mipsel 4:4.6.1-2 [1130 B]
+Get:61 http://mirror.ayous.org/debian/ unstable/main libblas3gf mipsel 1.2.20110419-2 [203 kB]
+Get:62 http://mirror.ayous.org/debian/ unstable/main libblas-dev mipsel 1.2.20110419-2 [244 kB]
+Get:63 http://mirror.ayous.org/debian/ unstable/main libbz2-dev mipsel 1.0.5-6 [38.1 kB]
+Get:64 http://mirror.ayous.org/debian/ unstable/main libjpeg62 mipsel 6b1-2 [93.7 kB]
+Get:65 http://mirror.ayous.org/debian/ unstable/main libjpeg8 mipsel 8c-2 [145 kB]
+Get:66 http://mirror.ayous.org/debian/ unstable/main libjpeg8-dev mipsel 8c-2 [256 kB]
+Get:67 http://mirror.ayous.org/debian/ unstable/main liblapack3gf mipsel 3.3.1-1 [4277 kB]
+Get:68 http://mirror.ayous.org/debian/ unstable/main liblapack-dev mipsel 3.3.1-1 [4906 kB]
+Get:69 http://mirror.ayous.org/debian/ unstable/main libncurses5-dev mipsel 5.9-1 [506 kB]
+Get:70 http://mirror.ayous.org/debian/ unstable/main libpaper1 mipsel 1.1.24+nmu1 [21.2 kB]
+Get:71 http://mirror.ayous.org/debian/ unstable/main libpaper-utils mipsel 1.1.24+nmu1 [18.2 kB]
+Get:72 http://mirror.ayous.org/debian/ unstable/main libpcre3-dev mipsel 8.12-4 [316 kB]
+Get:73 http://mirror.ayous.org/debian/ unstable/main zlib1g-dev mipsel 1:1.2.3.4.dfsg-3 [192 kB]
+Get:74 http://mirror.ayous.org/debian/ unstable/main libpng12-dev mipsel 1.2.46-3 [275 kB]
+Get:75 http://mirror.ayous.org/debian/ unstable/main libreadline6-dev mipsel 6.2-2 [270 kB]
+Get:76 http://mirror.ayous.org/debian/ unstable/main libreadline-dev mipsel 6.2-2 [882 B]
+Get:77 http://mirror.ayous.org/debian/ unstable/main libtiff4 mipsel 3.9.5-1 [191 kB]
+Get:78 http://mirror.ayous.org/debian/ unstable/main zip mipsel 3.0-4 [334 kB]
+Get:79 http://mirror.ayous.org/debian/ unstable/main unzip mipsel 6.0-5 [189 kB]
+Get:80 http://mirror.ayous.org/debian/ unstable/main xdg-utils all 1.1.0~rc1-2 [70.2 kB]
+Get:81 http://mirror.ayous.org/debian/ unstable/main tcl8.5 mipsel 8.5.10-1 [1604 kB]
+Get:82 http://mirror.ayous.org/debian/ unstable/main tk8.5 mipsel 8.5.10-1 [1162 kB]
+Get:83 http://mirror.ayous.org/debian/ unstable/main r-base-core mipsel 2.13.1-1 [14.6 MB]
+Get:84 http://mirror.ayous.org/debian/ unstable/main r-base-dev all 2.13.1-1 [3490 B]
debconf: delaying package configuration, since apt-utils is not installed
-0 upgraded, 58 newly installed, 0 to remove and 15 not upgraded.
-Need to get 0 B/42.1 MB of archives.
-After this operation, 98.3 MB of additional disk space will be used.
-Selecting previously deselected package ucf.
-(Reading database ... 12241 files and directories currently installed.)
-Unpacking ucf (from .../ucf_3.0025+nmu2_all.deb) ...
-Moving old data out of the way
-Selecting previously deselected package cdbs.
-Unpacking cdbs (from .../archives/cdbs_0.4.94_all.deb) ...
-Selecting previously deselected package dpatch.
-Unpacking dpatch (from .../archives/dpatch_2.0.31_all.deb) ...
+Fetched 66.9 MB in 13s (5012 kB/s)
+(Reading database ... 10806 files and directories currently installed.)
+Preparing to replace libgomp1 4.6.1-5 (using .../libgomp1_4.6.1-6_mipsel.deb) ...
+Unpacking replacement libgomp1 ...
+Preparing to replace gcc-4.6-base 4.6.1-5 (using .../gcc-4.6-base_4.6.1-6_mipsel.deb) ...
+Unpacking replacement gcc-4.6-base ...
+Setting up gcc-4.6-base (4.6.1-6) ...
+(Reading database ... 10806 files and directories currently installed.)
+Preparing to replace libgcc1 1:4.6.1-5 (using .../libgcc1_1%3a4.6.1-6_mipsel.deb) ...
+Unpacking replacement libgcc1 ...
+Setting up libgcc1 (1:4.6.1-6) ...
+(Reading database ... 10806 files and directories currently installed.)
+Preparing to replace cpp-4.6 4.6.1-5 (using .../cpp-4.6_4.6.1-6_mipsel.deb) ...
+Unpacking replacement cpp-4.6 ...
+Preparing to replace libstdc++6-4.6-dev 4.6.1-5 (using .../libstdc++6-4.6-dev_4.6.1-6_mipsel.deb) ...
+Unpacking replacement libstdc++6-4.6-dev ...
+Preparing to replace g++-4.6 4.6.1-5 (using .../g++-4.6_4.6.1-6_mipsel.deb) ...
+Unpacking replacement g++-4.6 ...
+Preparing to replace gcc-4.6 4.6.1-5 (using .../gcc-4.6_4.6.1-6_mipsel.deb) ...
+Unpacking replacement gcc-4.6 ...
+Preparing to replace libstdc++6 4.6.1-5 (using .../libstdc++6_4.6.1-6_mipsel.deb) ...
+Unpacking replacement libstdc++6 ...
+Setting up libstdc++6 (4.6.1-6) ...
+Selecting previously deselected package libpipeline1.
+(Reading database ... 10806 files and directories currently installed.)
+Unpacking libpipeline1 (from .../libpipeline1_1.2.0-3_mipsel.deb) ...
+Selecting previously deselected package libpcre3.
+Unpacking libpcre3 (from .../libpcre3_8.12-4_mipsel.deb) ...
+Selecting previously deselected package libdatrie1.
+Unpacking libdatrie1 (from .../libdatrie1_0.2.4-3_mipsel.deb) ...
Selecting previously deselected package libexpat1.
Unpacking libexpat1 (from .../libexpat1_2.0.1-7_mipsel.deb) ...
Selecting previously deselected package libfreetype6.
-Unpacking libfreetype6 (from .../libfreetype6_2.4.4-1_mipsel.deb) ...
+Unpacking libfreetype6 (from .../libfreetype6_2.4.6-1_mipsel.deb) ...
+Selecting previously deselected package ucf.
+Unpacking ucf (from .../ucf_3.0025+nmu2_all.deb) ...
+Moving old data out of the way
Selecting previously deselected package ttf-dejavu-core.
Unpacking ttf-dejavu-core (from .../ttf-dejavu-core_2.33-1_all.deb) ...
Selecting previously deselected package fontconfig-config.
-Unpacking fontconfig-config (from .../fontconfig-config_2.8.0-2.2_all.deb) ...
+Unpacking fontconfig-config (from .../fontconfig-config_2.8.0-3_all.deb) ...
Selecting previously deselected package libfontconfig1.
-Unpacking libfontconfig1 (from .../libfontconfig1_2.8.0-2.2_mipsel.deb) ...
-Selecting previously deselected package fontconfig.
-Unpacking fontconfig (from .../fontconfig_2.8.0-2.2_mipsel.deb) ...
+Unpacking libfontconfig1 (from .../libfontconfig1_2.8.0-3_mipsel.deb) ...
Selecting previously deselected package libgfortran3.
-Unpacking libgfortran3 (from .../libgfortran3_4.6.0-10_mipsel.deb) ...
-Selecting previously deselected package gfortran-4.6.
-Unpacking gfortran-4.6 (from .../gfortran-4.6_4.6.0-10_mipsel.deb) ...
-Selecting previously deselected package gfortran.
-Unpacking gfortran (from .../gfortran_4%3a4.6.0-5_mipsel.deb) ...
-Selecting previously deselected package libblas3gf.
-Unpacking libblas3gf (from .../libblas3gf_1.2-8_mipsel.deb) ...
-Selecting previously deselected package libblas-dev.
-Unpacking libblas-dev (from .../libblas-dev_1.2-8_mipsel.deb) ...
-Selecting previously deselected package libbz2-dev.
-Unpacking libbz2-dev (from .../libbz2-dev_1.0.5-6_mipsel.deb) ...
+Unpacking libgfortran3 (from .../libgfortran3_4.6.1-6_mipsel.deb) ...
+Selecting previously deselected package x11-common.
+Unpacking x11-common (from .../x11-common_1%3a7.6+7_all.deb) ...
+Selecting previously deselected package libice6.
+Unpacking libice6 (from .../libice6_2%3a1.0.7-2_mipsel.deb) ...
Selecting previously deselected package libpixman-1-0.
-Unpacking libpixman-1-0 (from .../libpixman-1-0_0.21.8-1_mipsel.deb) ...
+Unpacking libpixman-1-0 (from .../libpixman-1-0_0.22.2-1_mipsel.deb) ...
Selecting previously deselected package libpng12-0.
-Unpacking libpng12-0 (from .../libpng12-0_1.2.44-2_mipsel.deb) ...
+Unpacking libpng12-0 (from .../libpng12-0_1.2.46-3_mipsel.deb) ...
Selecting previously deselected package libxau6.
-Unpacking libxau6 (from .../libxau6_1%3a1.0.6-1_mipsel.deb) ...
+Unpacking libxau6 (from .../libxau6_1%3a1.0.6-3_mipsel.deb) ...
Selecting previously deselected package libxdmcp6.
-Unpacking libxdmcp6 (from .../libxdmcp6_1%3a1.1.0-1_mipsel.deb) ...
+Unpacking libxdmcp6 (from .../libxdmcp6_1%3a1.1.0-3_mipsel.deb) ...
Selecting previously deselected package libxcb1.
-Unpacking libxcb1 (from .../libxcb1_1.7-2_mipsel.deb) ...
+Unpacking libxcb1 (from .../libxcb1_1.7-3_mipsel.deb) ...
Selecting previously deselected package libx11-data.
-Unpacking libx11-data (from .../libx11-data_2%3a1.4.3-1_all.deb) ...
+Unpacking libx11-data (from .../libx11-data_2%3a1.4.4-1_all.deb) ...
Selecting previously deselected package libx11-6.
-Unpacking libx11-6 (from .../libx11-6_2%3a1.4.3-1_mipsel.deb) ...
+Unpacking libx11-6 (from .../libx11-6_2%3a1.4.4-1_mipsel.deb) ...
Selecting previously deselected package libxcb-render0.
-Unpacking libxcb-render0 (from .../libxcb-render0_1.7-2_mipsel.deb) ...
+Unpacking libxcb-render0 (from .../libxcb-render0_1.7-3_mipsel.deb) ...
Selecting previously deselected package libxcb-shm0.
-Unpacking libxcb-shm0 (from .../libxcb-shm0_1.7-2_mipsel.deb) ...
+Unpacking libxcb-shm0 (from .../libxcb-shm0_1.7-3_mipsel.deb) ...
Selecting previously deselected package libxrender1.
-Unpacking libxrender1 (from .../libxrender1_1%3a0.9.6-1_mipsel.deb) ...
+Unpacking libxrender1 (from .../libxrender1_1%3a0.9.6-2_mipsel.deb) ...
Selecting previously deselected package libcairo2.
-Unpacking libcairo2 (from .../libcairo2_1.10.2-6_mipsel.deb) ...
-Selecting previously deselected package libdatrie1.
-Unpacking libdatrie1 (from .../libdatrie1_0.2.4-2_mipsel.deb) ...
-Selecting previously deselected package x11-common.
-Unpacking x11-common (from .../x11-common_1%3a7.6+6_all.deb) ...
-Selecting previously deselected package libice6.
-Unpacking libice6 (from .../libice6_2%3a1.0.7-1_mipsel.deb) ...
+Unpacking libcairo2 (from .../libcairo2_1.10.2-6.1_mipsel.deb) ...
+Selecting previously deselected package libglib2.0-0.
+Unpacking libglib2.0-0 (from .../libglib2.0-0_2.28.6-1_mipsel.deb) ...
+Selecting previously deselected package libthai-data.
+Unpacking libthai-data (from .../libthai-data_0.1.15-2_all.deb) ...
+Selecting previously deselected package libthai0.
+Unpacking libthai0 (from .../libthai0_0.1.15-2_mipsel.deb) ...
+Selecting previously deselected package libxft2.
+Unpacking libxft2 (from .../libxft2_2.2.0-3_mipsel.deb) ...
+Selecting previously deselected package fontconfig.
+Unpacking fontconfig (from .../fontconfig_2.8.0-3_mipsel.deb) ...
+Selecting previously deselected package libpango1.0-0.
+Unpacking libpango1.0-0 (from .../libpango1.0-0_1.28.4-2_mipsel.deb) ...
+Selecting previously deselected package libpcrecpp0.
+Unpacking libpcrecpp0 (from .../libpcrecpp0_8.12-4_mipsel.deb) ...
+Selecting previously deselected package libsm6.
+Unpacking libsm6 (from .../libsm6_2%3a1.2.0-2_mipsel.deb) ...
+Selecting previously deselected package libxext6.
+Unpacking libxext6 (from .../libxext6_2%3a1.3.0-3_mipsel.deb) ...
+Selecting previously deselected package libxss1.
+Unpacking libxss1 (from .../libxss1_1%3a1.2.1-2_mipsel.deb) ...
+Selecting previously deselected package libxt6.
+Unpacking libxt6 (from .../libxt6_1%3a1.1.1-2_mipsel.deb) ...
+Selecting previously deselected package bsdmainutils.
+Unpacking bsdmainutils (from .../bsdmainutils_8.2.3_mipsel.deb) ...
+Selecting previously deselected package groff-base.
+Unpacking groff-base (from .../groff-base_1.21-6_mipsel.deb) ...
+Selecting previously deselected package man-db.
+Unpacking man-db (from .../man-db_2.6.0.2-2_mipsel.deb) ...
+Selecting previously deselected package libmagic1.
+Unpacking libmagic1 (from .../libmagic1_5.04-5+b1_mipsel.deb) ...
+Selecting previously deselected package file.
+Unpacking file (from .../file_5.04-5+b1_mipsel.deb) ...
+Selecting previously deselected package gettext-base.
+Unpacking gettext-base (from .../gettext-base_0.18.1.1-4_mipsel.deb) ...
+Selecting previously deselected package libxml2.
+Unpacking libxml2 (from .../libxml2_2.7.8.dfsg-4_mipsel.deb) ...
+Selecting previously deselected package html2text.
+Unpacking html2text (from .../html2text_1.3.2a-15_mipsel.deb) ...
+Selecting previously deselected package libcroco3.
+Unpacking libcroco3 (from .../libcroco3_0.6.2-1_mipsel.deb) ...
+Selecting previously deselected package libunistring0.
+Unpacking libunistring0 (from .../libunistring0_0.9.3-4_mipsel.deb) ...
+Selecting previously deselected package gettext.
+Unpacking gettext (from .../gettext_0.18.1.1-4_mipsel.deb) ...
+Selecting previously deselected package intltool-debian.
+Unpacking intltool-debian (from .../intltool-debian_0.35.0+20060710.1_all.deb) ...
+Selecting previously deselected package po-debconf.
+Unpacking po-debconf (from .../po-debconf_1.0.16+nmu1_all.deb) ...
+Selecting previously deselected package debhelper.
+Unpacking debhelper (from .../debhelper_8.9.4_all.deb) ...
+Selecting previously deselected package cdbs.
+Unpacking cdbs (from .../archives/cdbs_0.4.96_all.deb) ...
+Selecting previously deselected package dpatch.
+Unpacking dpatch (from .../archives/dpatch_2.0.31_all.deb) ...
+Selecting previously deselected package gfortran-4.6.
+Unpacking gfortran-4.6 (from .../gfortran-4.6_4.6.1-6_mipsel.deb) ...
+Selecting previously deselected package gfortran.
+Unpacking gfortran (from .../gfortran_4%3a4.6.1-2_mipsel.deb) ...
+Selecting previously deselected package libblas3gf.
+Unpacking libblas3gf (from .../libblas3gf_1.2.20110419-2_mipsel.deb) ...
+Selecting previously deselected package libblas-dev.
+Unpacking libblas-dev (from .../libblas-dev_1.2.20110419-2_mipsel.deb) ...
+Selecting previously deselected package libbz2-dev.
+Unpacking libbz2-dev (from .../libbz2-dev_1.0.5-6_mipsel.deb) ...
Selecting previously deselected package libjpeg62.
-Unpacking libjpeg62 (from .../libjpeg62_6b1-1_mipsel.deb) ...
-Selecting previously deselected package libjpeg62-dev.
-Unpacking libjpeg62-dev (from .../libjpeg62-dev_6b1-1_mipsel.deb) ...
+Unpacking libjpeg62 (from .../libjpeg62_6b1-2_mipsel.deb) ...
+Selecting previously deselected package libjpeg8.
+Unpacking libjpeg8 (from .../libjpeg8_8c-2_mipsel.deb) ...
+Selecting previously deselected package libjpeg8-dev.
+Unpacking libjpeg8-dev (from .../libjpeg8-dev_8c-2_mipsel.deb) ...
Selecting previously deselected package liblapack3gf.
-Unpacking liblapack3gf (from .../liblapack3gf_3.3.0-4_mipsel.deb) ...
+Unpacking liblapack3gf (from .../liblapack3gf_3.3.1-1_mipsel.deb) ...
Selecting previously deselected package liblapack-dev.
-Unpacking liblapack-dev (from .../liblapack-dev_3.3.0-4_mipsel.deb) ...
+Unpacking liblapack-dev (from .../liblapack-dev_3.3.1-1_mipsel.deb) ...
Selecting previously deselected package libncurses5-dev.
Unpacking libncurses5-dev (from .../libncurses5-dev_5.9-1_mipsel.deb) ...
-Selecting previously deselected package libthai-data.
-Unpacking libthai-data (from .../libthai-data_0.1.15-1_all.deb) ...
-Selecting previously deselected package libthai0.
-Unpacking libthai0 (from .../libthai0_0.1.15-1_mipsel.deb) ...
-Selecting previously deselected package libxft2.
-Unpacking libxft2 (from .../libxft2_2.2.0-2_mipsel.deb) ...
-Selecting previously deselected package libpango1.0-0.
-Unpacking libpango1.0-0 (from .../libpango1.0-0_1.28.3-6_mipsel.deb) ...
Selecting previously deselected package libpaper1.
Unpacking libpaper1 (from .../libpaper1_1.1.24+nmu1_mipsel.deb) ...
Selecting previously deselected package libpaper-utils.
Unpacking libpaper-utils (from .../libpaper-utils_1.1.24+nmu1_mipsel.deb) ...
-Selecting previously deselected package libpcrecpp0.
-Unpacking libpcrecpp0 (from .../libpcrecpp0_8.12-3_mipsel.deb) ...
Selecting previously deselected package libpcre3-dev.
-Unpacking libpcre3-dev (from .../libpcre3-dev_8.12-3_mipsel.deb) ...
+Unpacking libpcre3-dev (from .../libpcre3-dev_8.12-4_mipsel.deb) ...
Selecting previously deselected package zlib1g-dev.
Unpacking zlib1g-dev (from .../zlib1g-dev_1%3a1.2.3.4.dfsg-3_mipsel.deb) ...
Selecting previously deselected package libpng12-dev.
-Unpacking libpng12-dev (from .../libpng12-dev_1.2.44-2_mipsel.deb) ...
+Unpacking libpng12-dev (from .../libpng12-dev_1.2.46-3_mipsel.deb) ...
Selecting previously deselected package libreadline6-dev.
Unpacking libreadline6-dev (from .../libreadline6-dev_6.2-2_mipsel.deb) ...
Selecting previously deselected package libreadline-dev.
Unpacking libreadline-dev (from .../libreadline-dev_6.2-2_mipsel.deb) ...
-Selecting previously deselected package libsm6.
-Unpacking libsm6 (from .../libsm6_2%3a1.2.0-1_mipsel.deb) ...
Selecting previously deselected package libtiff4.
Unpacking libtiff4 (from .../libtiff4_3.9.5-1_mipsel.deb) ...
-Selecting previously deselected package libxext6.
-Unpacking libxext6 (from .../libxext6_2%3a1.3.0-1_mipsel.deb) ...
-Selecting previously deselected package libxss1.
-Unpacking libxss1 (from .../libxss1_1%3a1.2.1-1_mipsel.deb) ...
-Selecting previously deselected package libxt6.
-Unpacking libxt6 (from .../libxt6_1%3a1.1.1-1_mipsel.deb) ...
Selecting previously deselected package zip.
-Unpacking zip (from .../archives/zip_3.0-3_mipsel.deb) ...
+Unpacking zip (from .../archives/zip_3.0-4_mipsel.deb) ...
Selecting previously deselected package unzip.
-Unpacking unzip (from .../unzip_6.0-4_mipsel.deb) ...
+Unpacking unzip (from .../unzip_6.0-5_mipsel.deb) ...
Selecting previously deselected package xdg-utils.
Unpacking xdg-utils (from .../xdg-utils_1.1.0~rc1-2_all.deb) ...
Selecting previously deselected package tcl8.5.
-Unpacking tcl8.5 (from .../tcl8.5_8.5.9-2_mipsel.deb) ...
+Unpacking tcl8.5 (from .../tcl8.5_8.5.10-1_mipsel.deb) ...
Selecting previously deselected package tk8.5.
-Unpacking tk8.5 (from .../tk8.5_8.5.9-2_mipsel.deb) ...
+Unpacking tk8.5 (from .../tk8.5_8.5.10-1_mipsel.deb) ...
Selecting previously deselected package r-base-core.
-Unpacking r-base-core (from .../r-base-core_2.13.0-2_mipsel.deb) ...
+Unpacking r-base-core (from .../r-base-core_2.13.1-1_mipsel.deb) ...
Selecting previously deselected package r-base-dev.
-Unpacking r-base-dev (from .../r-base-dev_2.13.0-2_all.deb) ...
-Processing triggers for man-db ...
-Setting up ucf (3.0025+nmu2) ...
-Setting up cdbs (0.4.94) ...
-Setting up dpatch (2.0.31) ...
+Unpacking r-base-dev (from .../r-base-dev_2.13.1-1_all.deb) ...
+Setting up libgomp1 (4.6.1-6) ...
+Setting up cpp-4.6 (4.6.1-6) ...
+Setting up gcc-4.6 (4.6.1-6) ...
+Setting up libpipeline1 (1.2.0-3) ...
+Setting up libpcre3 (8.12-4) ...
+Setting up libdatrie1 (0.2.4-3) ...
Setting up libexpat1 (2.0.1-7) ...
-Setting up libfreetype6 (2.4.4-1) ...
+Setting up libfreetype6 (2.4.6-1) ...
+Setting up ucf (3.0025+nmu2) ...
Setting up ttf-dejavu-core (2.33-1) ...
-Setting up fontconfig-config (2.8.0-2.2) ...
-Setting up libfontconfig1 (2.8.0-2.2) ...
-Setting up fontconfig (2.8.0-2.2) ...
+Setting up fontconfig-config (2.8.0-3) ...
+Setting up libfontconfig1 (2.8.0-3) ...
+Setting up libgfortran3 (4.6.1-6) ...
+Setting up x11-common (1:7.6+7) ...
+All runlevel operations denied by policy
+invoke-rc.d: policy-rc.d denied execution of start.
+Setting up libice6 (2:1.0.7-2) ...
+Setting up libpixman-1-0 (0.22.2-1) ...
+Setting up libpng12-0 (1.2.46-3) ...
+Setting up libxau6 (1:1.0.6-3) ...
+Setting up libxdmcp6 (1:1.1.0-3) ...
+Setting up libxcb1 (1.7-3) ...
+Setting up libx11-data (2:1.4.4-1) ...
+Setting up libx11-6 (2:1.4.4-1) ...
+Setting up libxcb-render0 (1.7-3) ...
+Setting up libxcb-shm0 (1.7-3) ...
+Setting up libxrender1 (1:0.9.6-2) ...
+Setting up libcairo2 (1.10.2-6.1) ...
+Setting up libglib2.0-0 (2.28.6-1) ...
+No schema files found: doing nothing.
+Setting up libthai-data (0.1.15-2) ...
+Setting up libthai0 (0.1.15-2) ...
+Setting up libxft2 (2.2.0-3) ...
+Setting up fontconfig (2.8.0-3) ...
Cleaning up old fontconfig caches... done.
Regenerating fonts cache... done.
-Setting up libgfortran3 (4.6.0-10) ...
-Setting up gfortran-4.6 (4.6.0-10) ...
-Setting up gfortran (4:4.6.0-5) ...
+Setting up libpango1.0-0 (1.28.4-2) ...
+Setting up libpcrecpp0 (8.12-4) ...
+Setting up libsm6 (2:1.2.0-2) ...
+Setting up libxext6 (2:1.3.0-3) ...
+Setting up libxss1 (1:1.2.1-2) ...
+Setting up libxt6 (1:1.1.1-2) ...
+Setting up bsdmainutils (8.2.3) ...
+update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode.
+update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode.
+Setting up groff-base (1.21-6) ...
+Setting up man-db (2.6.0.2-2) ...
+Building database of manual pages ...
+Setting up libmagic1 (5.04-5+b1) ...
+Setting up file (5.04-5+b1) ...
+Setting up gettext-base (0.18.1.1-4) ...
+Setting up libxml2 (2.7.8.dfsg-4) ...
+Setting up html2text (1.3.2a-15) ...
+Setting up libcroco3 (0.6.2-1) ...
+Setting up libunistring0 (0.9.3-4) ...
+Setting up gettext (0.18.1.1-4) ...
+Setting up intltool-debian (0.35.0+20060710.1) ...
+Setting up po-debconf (1.0.16+nmu1) ...
+Setting up debhelper (8.9.4) ...
+Setting up cdbs (0.4.96) ...
+Setting up dpatch (2.0.31) ...
+Setting up gfortran-4.6 (4.6.1-6) ...
+Setting up gfortran (4:4.6.1-2) ...
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode.
-Setting up libblas3gf (1.2-8) ...
+Setting up libblas3gf (1.2.20110419-2) ...
update-alternatives: using /usr/lib/libblas/libblas.so.3gf to provide /usr/lib/libblas.so.3gf (libblas.so.3gf) in auto mode.
-Setting up libblas-dev (1.2-8) ...
+Setting up libblas-dev (1.2.20110419-2) ...
update-alternatives: using /usr/lib/libblas/libblas.so to provide /usr/lib/libblas.so (libblas.so) in auto mode.
Setting up libbz2-dev (1.0.5-6) ...
-Setting up libpixman-1-0 (0.21.8-1) ...
-Setting up libpng12-0 (1.2.44-2) ...
-Setting up libxau6 (1:1.0.6-1) ...
-Setting up libxdmcp6 (1:1.1.0-1) ...
-Setting up libxcb1 (1.7-2) ...
-Setting up libx11-data (2:1.4.3-1) ...
-Setting up libx11-6 (2:1.4.3-1) ...
-Setting up libxcb-render0 (1.7-2) ...
-Setting up libxcb-shm0 (1.7-2) ...
-Setting up libxrender1 (1:0.9.6-1) ...
-Setting up libcairo2 (1.10.2-6) ...
-Setting up libdatrie1 (0.2.4-2) ...
-Setting up x11-common (1:7.6+6) ...
-All runlevel operations denied by policy
-invoke-rc.d: policy-rc.d denied execution of start.
-Setting up libice6 (2:1.0.7-1) ...
-Setting up libjpeg62 (6b1-1) ...
-Setting up libjpeg62-dev (6b1-1) ...
-Setting up liblapack3gf (3.3.0-4) ...
+Setting up libjpeg62 (6b1-2) ...
+Setting up libjpeg8 (8c-2) ...
+Setting up libjpeg8-dev (8c-2) ...
+Setting up liblapack3gf (3.3.1-1) ...
update-alternatives: using /usr/lib/lapack/liblapack.so.3gf to provide /usr/lib/liblapack.so.3gf (liblapack.so.3gf) in auto mode.
-Setting up liblapack-dev (3.3.0-4) ...
+Setting up liblapack-dev (3.3.1-1) ...
update-alternatives: using /usr/lib/lapack/liblapack.so to provide /usr/lib/liblapack.so (liblapack.so) in auto mode.
Setting up libncurses5-dev (5.9-1) ...
-Setting up libthai-data (0.1.15-1) ...
-Setting up libthai0 (0.1.15-1) ...
-Setting up libxft2 (2.2.0-2) ...
-Setting up libpango1.0-0 (1.28.3-6) ...
Setting up libpaper1 (1.1.24+nmu1) ...
Creating config file /etc/papersize with new version
Setting up libpaper-utils (1.1.24+nmu1) ...
-Setting up libpcrecpp0 (8.12-3) ...
-Setting up libpcre3-dev (8.12-3) ...
+Setting up libpcre3-dev (8.12-4) ...
Setting up zlib1g-dev (1:1.2.3.4.dfsg-3) ...
-Setting up libpng12-dev (1.2.44-2) ...
+Setting up libpng12-dev (1.2.46-3) ...
Setting up libreadline6-dev (6.2-2) ...
Setting up libreadline-dev (6.2-2) ...
-Setting up libsm6 (2:1.2.0-1) ...
Setting up libtiff4 (3.9.5-1) ...
-Setting up libxext6 (2:1.3.0-1) ...
-Setting up libxss1 (1:1.2.1-1) ...
-Setting up libxt6 (1:1.1.1-1) ...
-Setting up zip (3.0-3) ...
-Setting up unzip (6.0-4) ...
+Setting up zip (3.0-4) ...
+Setting up unzip (6.0-5) ...
Setting up xdg-utils (1.1.0~rc1-2) ...
-Setting up tcl8.5 (8.5.9-2) ...
+Setting up tcl8.5 (8.5.10-1) ...
update-alternatives: using /usr/bin/tclsh8.5 to provide /usr/bin/tclsh (tclsh) in auto mode.
-Setting up tk8.5 (8.5.9-2) ...
+Setting up tk8.5 (8.5.10-1) ...
update-alternatives: using /usr/bin/wish8.5 to provide /usr/bin/wish (wish) in auto mode.
-Setting up r-base-core (2.13.0-2) ...
+Setting up r-base-core (2.13.1-1) ...
Setting R_PAPERSIZE_USER default to 'a4'
Creating config file /etc/R/Renviron with new version
-Setting up r-base-dev (2.13.0-2) ...
+Setting up r-base-dev (2.13.1-1) ...
+Setting up libstdc++6-4.6-dev (4.6.1-6) ...
+Setting up g++-4.6 (4.6.1-6) ...
Removing negative dependencies:
Reading package lists...
Building dependency tree...
Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 15 not upgraded.
+0 upgraded, 0 newly installed, 0 to remove and 11 not upgraded.
Checking correctness of dependencies...
-Kernel: Linux 2.6.32-5-sb1-bcm91250a mipsel (mips64)
-Toolchain package versions: binutils_2.21.51.20110523-1 dpkg-dev_1.16.0.2 g++-4.6_4.6.0-10 gcc-4.6_4.6.0-10 libc6-dev_2.13-4 libstdc++6_4.6.0-10 libstdc++6-4.6-dev_4.6.0-10 linux-libc-dev_2.6.38-4
-Package versions: apt_0.8.14.1 base-files_6.3 base-passwd_3.5.22 bash_4.1-3 binutils_2.21.51.20110523-1 bsdmainutils_8.2.2 bsdutils_1:2.17.2-9.1 build-essential_11.5 bzip2_1.0.5-6 cdbs_0.4.94 coreutils_8.5-1 cpio_2.11-7 cpp_4:4.6.0-5 cpp-4.6_4.6.0-10 dash_0.5.5.1-7.4 debconf_1.5.39 debfoster_2.7-1.1 debhelper_8.1.6 debian-archive-keyring_2010.08.28 debianutils_3.4.4 diffutils_1:3.0-1 dmsetup_2:1.02.63-3 dpatch_2.0.31 dpkg_1.16.0.2 dpkg-dev_1.16.0.2 e2fslibs_1.41.12-4 e2fsprogs_1.41.12-4 fakeroot_1.15.1-1 file_5.04-5+b1 findutils_4.4.2-1+b1 fontconfig_2.8.0-2.2 fontconfig-config_2.8.0-2.2 g++_4:4.6.0-5 g++-4.6_4.6.0-10 gcc_4:4.6.0-5 gcc-4.4-base_4.4.6-3 gcc-4.5-base_4.5.3-1 gcc-4.6_4.6.0-10 gcc-4.6-base_4.6.0-10 gettext_0.18.1.1-3 gettext-base_0.18.1.1-3 gfortran_4:4.6.0-5 gfortran-4.6_4.6.0-10 gnupg_1.4.11-3 gpgv_1.4.11-3 grep_2.6.3-3 groff-base_1.21-5 gzip_1.3.12-9 hostname_3.06 html2text_1.3.2a-15 initscripts_2.88dsf-13.2 insserv_1.14.0-2.1 intltool-debian_0.35.0+20060710.1 libacl1_2.2.49-5 libattr1_1:2.4.44-3 libblas-dev_1.2-8 libblas3gf_1.2-8 libblkid1_2.17.2-9.1 libbz2-1.0_1.0.5-6 libbz2-dev_1.0.5-6 libc-bin_2.13-4 libc-dev-bin_2.13-4 libc6_2.13-4 libc6-dev_2.13-4 libcairo2_1.10.2-6 libcloog-ppl0_0.15.9-3 libcomerr2_1.41.12-4 libcroco3_0.6.2-1 libdatrie1_0.2.4-2 libdb5.1_5.1.25-10 libdevmapper1.02.1_2:1.02.63-3 libdpkg-perl_1.16.0.2 libexpat1_2.0.1-7 libfontconfig1_2.8.0-2.2 libfreetype6_2.4.4-1 libgc1c2_1:7.1-7 libgcc1_1:4.6.0-10 libgdbm3_1.8.3-9 libgfortran3_4.6.0-10 libglib2.0-0_2.28.6-1 libgmp10_2:5.0.1+dfsg-7 libgmpxx4ldbl_2:5.0.1+dfsg-7 libgomp1_4.6.0-10 libice6_2:1.0.7-1 libjpeg62_6b1-1 libjpeg62-dev_6b1-1 liblapack-dev_3.3.0-4 liblapack3gf_3.3.0-4 liblzma2_5.0.0-2 libmagic1_5.04-5+b1 libmpc2_0.9-3 libmpfr4_3.0.1-3 libncurses5_5.9-1 libncurses5-dev_5.9-1 libncursesw5_5.9-1 libpam-modules_1.1.2-3 libpam-runtime_1.1.2-3 libpam0g_1.1.2-3 libpango1.0-0_1.28.3-6 libpaper-utils_1.1.24+nmu1 libpaper1_1.1.24+nmu1 libpcre3_8.12-3 libpcre3-dev_8.12-3 libpcrecpp0_8.12-3 libpipeline1_1.2.0-1 libpixman-1-0_0.21.8-1 libpng12-0_1.2.44-2 libpng12-dev_1.2.44-2 libppl-c4_0.11.2-3 libppl9_0.11.2-3 libpwl5_0.11.2-3 libreadline-dev_6.2-2 libreadline6_6.2-2 libreadline6-dev_6.2-2 libselinux1_2.0.98-1+b1 libsepol1_2.0.42-1 libslang2_2.2.4-2 libsm6_2:1.2.0-1 libss2_1.41.12-4 libstdc++6_4.6.0-10 libstdc++6-4.6-dev_4.6.0-10 libthai-data_0.1.15-1 libthai0_0.1.15-1 libtiff4_3.9.5-1 libtimedate-perl_1.2000-1 libudev0_168-2 libunistring0_0.9.3-4 libusb-0.1-4_2:0.1.12-17 libuuid1_2.17.2-9.1 libx11-6_2:1.4.3-1 libx11-data_2:1.4.3-1 libxau6_1:1.0.6-1 libxcb-render0_1.7-2 libxcb-shm0_1.7-2 libxcb1_1.7-2 libxdmcp6_1:1.1.0-1 libxext6_2:1.3.0-1 libxft2_2.2.0-2 libxml2_2.7.8.dfsg-2+b1 libxrender1_1:0.9.6-1 libxss1_1:1.2.1-1 libxt6_1:1.1.1-1 linux-libc-dev_2.6.38-4 login_1:4.1.4.2+svn3283-3 lsb-base_3.2-27 make_3.81-8.1 man-db_2.6.0.2-1 mawk_1.3.3-15 module-init-tools_3.12-1 mount_2.17.2-9.1 ncurses-base_5.9-1 ncurses-bin_5.9-1 passwd_1:4.1.4.2+svn3283-3 patch_2.6.1-1 perl_5.12.3-7 perl-base_5.12.3-7 perl-modules_5.12.3-7 po-debconf_1.0.16+nmu1 procps_1:3.2.8-10 r-base-core_2.13.0-2 r-base-dev_2.13.0-2 readline-common_6.2-1 sed_4.2.1-9 sensible-utils_0.0.6 sysv-rc_2.88dsf-13.2 sysvinit_2.88dsf-13.2 sysvinit-utils_2.88dsf-13.2 tar_1.25-3 tcl8.5_8.5.9-2 tk8.5_8.5.9-2 ttf-dejavu-core_2.33-1 tzdata_2011g-1 ucf_3.0025+nmu2 udev_168-2 unzip_6.0-4 util-linux_2.17.2-9.1 x11-common_1:7.6+6 xdg-utils_1.1.0~rc1-2 xz-utils_5.0.0-2 zip_3.0-3 zlib1g_1:1.2.3.4.dfsg-3 zlib1g-dev_1:1.2.3.4.dfsg-3
+Kernel: Linux 2.6.39-2-loongson-2e mipsel (mips64)
+Toolchain package versions: binutils_2.21.52.20110606-2 dpkg-dev_1.16.0.3 g++-4.6_4.6.1-6 gcc-4.6_4.6.1-6 libc6-dev_2.13-15 libstdc++6_4.6.1-6 libstdc++6-4.6-dev_4.6.1-6 linux-libc-dev_3.0.0-1
+Package versions: apt_0.8.15.5 base-files_6.5 base-passwd_3.5.23 bash_4.1-3 binutils_2.21.52.20110606-2 binutils-dev_2.21.52.20110606-2 bsdmainutils_8.2.3 bsdutils_1:2.19.1-5 build-essential_11.5 bzip2_1.0.5-6 cdbs_0.4.96 coreutils_8.5-1 cpp_4:4.6.1-2 cpp-4.6_4.6.1-6 dash_0.5.5.1-7.4 debconf_1.5.41 debconf-i18n_1.5.41 debfoster_2.7-1.1 debhelper_8.9.4 debian-archive-keyring_2010.08.28 debianutils_4.0.2 diffutils_1:3.0-1 dpatch_2.0.31 dpkg_1.16.0.3 dpkg-dev_1.16.0.3 e2fslibs_1.42~WIP-2011-07-02-1 e2fsprogs_1.42~WIP-2011-07-02-1 fakeroot_1.16-1 file_5.04-5+b1 findutils_4.4.2-1+b1 fontconfig_2.8.0-3 fontconfig-config_2.8.0-3 g++_4:4.6.1-2 g++-4.6_4.6.1-6 gcc_4:4.6.1-2 gcc-4.4-base_4.4.6-7 gcc-4.5-base_4.5.3-5 gcc-4.6_4.6.1-6 gcc-4.6-base_4.6.1-6 gettext_0.18.1.1-4 gettext-base_0.18.1.1-4 gfortran_4:4.6.1-2 gfortran-4.6_4.6.1-6 gnupg_1.4.11-3 gpgv_1.4.11-3 grep_2.9-1 groff-base_1.21-6 gzip_1.4-1 hostname_3.06 html2text_1.3.2a-15 initscripts_2.88dsf-13.11 insserv_1.14.0-2.1 intltool-debian_0.35.0+20060710.1 libacl1_2.2.51-3 libattr1_1:2.4.46-3 libblas-dev_1.2.20110419-2 libblas3gf_1.2.20110419-2 libblkid1_2.19.1-5 libbz2-1.0_1.0.5-6 libbz2-dev_1.0.5-6 libc-bin_2.13-15 libc-dev-bin_2.13-15 libc6_2.13-15 libc6-dev_2.13-15 libcairo2_1.10.2-6.1 libcloog-ppl0_0.15.9-3 libcomerr2_1.42~WIP-2011-07-02-1 libcroco3_0.6.2-1 libdatrie1_0.2.4-3 libdb5.1_5.1.25-11 libdpkg-perl_1.16.0.3 libexpat1_2.0.1-7 libfontconfig1_2.8.0-3 libfreetype6_2.4.6-1 libgc1c2_1:7.1-8 libgcc1_1:4.6.1-6 libgdbm3_1.8.3-10 libgfortran3_4.6.1-6 libglib2.0-0_2.28.6-1 libgmp10_2:5.0.1+dfsg-7 libgmpxx4ldbl_2:5.0.1+dfsg-7 libgomp1_4.6.1-6 libice6_2:1.0.7-2 libjpeg62_6b1-2 libjpeg8_8c-2 libjpeg8-dev_8c-2 liblapack-dev_3.3.1-1 liblapack3gf_3.3.1-1 liblocale-gettext-perl_1.05-7 liblzma2_5.0.0-2 libmagic1_5.04-5+b1 libmount1_2.19.1-5 libmpc2_0.9-3 libmpfr4_3.0.1-5 libncurses5_5.9-1 libncurses5-dev_5.9-1 libpam-modules_1.1.3-2 libpam-modules-bin_1.1.3-2 libpam-runtime_1.1.3-2 libpam0g_1.1.3-2 libpango1.0-0_1.28.4-2 libpaper-utils_1.1.24+nmu1 libpaper1_1.1.24+nmu1 libpcre3_8.12-4 libpcre3-dev_8.12-4 libpcrecpp0_8.12-4 libpipeline1_1.2.0-3 libpixman-1-0_0.22.2-1 libpng12-0_1.2.46-3 libpng12-dev_1.2.46-3 libppl-c4_0.11.2-4 libppl9_0.11.2-4 libpwl5_0.11.2-4 libreadline-dev_6.2-2 libreadline6_6.2-2 libreadline6-dev_6.2-2 libselinux1_2.0.98-1.1 libsepol1_2.0.42-1 libslang2_2.2.4-2 libsm6_2:1.2.0-2 libss2_1.42~WIP-2011-07-02-1 libstdc++6_4.6.1-6 libstdc++6-4.6-dev_4.6.1-6 libtext-charwidth-perl_0.04-7 libtext-iconv-perl_1.7-4 libtext-wrapi18n-perl_0.06-7 libthai-data_0.1.15-2 libthai0_0.1.15-2 libtiff4_3.9.5-1 libtimedate-perl_1.2000-1 libunistring0_0.9.3-4 libusb-0.1-4_2:0.1.12-18 libuuid1_2.19.1-5 libx11-6_2:1.4.4-1 libx11-data_2:1.4.4-1 libxau6_1:1.0.6-3 libxcb-render0_1.7-3 libxcb-shm0_1.7-3 libxcb1_1.7-3 libxdmcp6_1:1.1.0-3 libxext6_2:1.3.0-3 libxft2_2.2.0-3 libxml2_2.7.8.dfsg-4 libxrender1_1:0.9.6-2 libxss1_1:1.2.1-2 libxt6_1:1.1.1-2 linux-libc-dev_3.0.0-1 login_1:4.1.4.2+svn3283-3 lsb-base_3.2-27 make_3.81-8.1 man-db_2.6.0.2-2 mawk_1.3.3-15 mount_2.19.1-5 multiarch-support_2.13-15 ncurses-base_5.9-1 ncurses-bin_5.9-1 passwd_1:4.1.4.2+svn3283-3 patch_2.6.1-2 perl_5.12.4-2 perl-base_5.12.4-2 perl-modules_5.12.4-2 po-debconf_1.0.16+nmu1 r-base-core_2.13.1-1 r-base-dev_2.13.1-1 readline-common_6.2-2 sed_4.2.1-9 sensible-utils_0.0.6 sudo_1.7.4p6-1 sysv-rc_2.88dsf-13.11 sysvinit_2.88dsf-13.11 sysvinit-utils_2.88dsf-13.11 tar_1.25-3 tcl8.5_8.5.10-1 tk8.5_8.5.10-1 ttf-dejavu-core_2.33-1 tzdata_2011h-3 ucf_3.0025+nmu2 unzip_6.0-5 util-linux_2.19.1-5 x11-common_1:7.6+7 xdg-utils_1.1.0~rc1-2 xz-utils_5.0.0-2 zip_3.0-4 zlib1g_1:1.2.3.4.dfsg-3 zlib1g-dev_1:1.2.3.4.dfsg-3
┌──────────────────────────────────────────────────────────────────────────────┐
│ Build │
@@ -399,14 +581,13 @@ Package versions: apt_0.8.14.1 base-files_6.3 base-passwd_3.5.22 bash_4.1-3 binu
Unpack source
─────────────
-Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/Source/Package.pm line 258.
gpgv: keyblock resource `/home/buildd/.gnupg/trustedkeys.gpg': file open error
-gpgv: Signature made Thu Jun 2 04:18:41 2011 UTC using RSA key ID 2295D502
+gpgv: Signature made Sun Aug 14 11:36:35 2011 UTC using RSA key ID 2295D502
gpgv: Can't check signature: public key not found
-dpkg-source: warning: failed to verify signature on ./r-bioc-limma_3.8.2-1.dsc
-dpkg-source: info: extracting r-bioc-limma in r-bioc-limma-3.8.2
-dpkg-source: info: unpacking r-bioc-limma_3.8.2.orig.tar.gz
-dpkg-source: info: applying r-bioc-limma_3.8.2-1.diff.gz
+dpkg-source: warning: failed to verify signature on ./r-bioc-limma_3.8.3-1.dsc
+dpkg-source: info: extracting r-bioc-limma in r-bioc-limma-3.8.3
+dpkg-source: info: unpacking r-bioc-limma_3.8.3.orig.tar.gz
+dpkg-source: info: applying r-bioc-limma_3.8.3-1.diff.gz
Check disc space
────────────────
@@ -415,33 +596,24 @@ Check disc space
dpkg-buildpackage
─────────────────
-Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
dpkg-buildpackage: export CFLAGS from dpkg-buildflags (origin: vendor): -g -O2
dpkg-buildpackage: export CPPFLAGS from dpkg-buildflags (origin: vendor):
dpkg-buildpackage: export CXXFLAGS from dpkg-buildflags (origin: vendor): -g -O2
dpkg-buildpackage: export FFLAGS from dpkg-buildflags (origin: vendor): -g -O2
dpkg-buildpackage: export LDFLAGS from dpkg-buildflags (origin: vendor):
dpkg-buildpackage: source package r-bioc-limma
-dpkg-buildpackage: source version 3.8.2-1
- dpkg-source --before-build r-bioc-limma-3.8.2
+dpkg-buildpackage: source version 3.8.3-1
+ dpkg-source --before-build r-bioc-limma-3.8.3
dpkg-buildpackage: host architecture mipsel
fakeroot debian/rules clean
-Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
-Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
-Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
-Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
test -x debian/rules
dh_testroot
/usr/bin/make -f debian/rules reverse-config
-Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
-Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
-Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
-Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
-make[1]: Entering directory `/build/buildd-r-bioc-limma_3.8.2-1-mipsel-moivXA/r-bioc-limma-3.8.2'
+make[1]: Entering directory `/build/buildd-r-bioc-limma_3.8.3-1-mipsel-srTuXk/r-bioc-limma-3.8.3'
make[1]: Nothing to be done for `reverse-config'.
-make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.8.2-1-mipsel-moivXA/r-bioc-limma-3.8.2'
+make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.8.3-1-mipsel-srTuXk/r-bioc-limma-3.8.3'
if [ "reverse-patches" = "reverse-patches" ]; then rm -f debian/stamp-patched; fi
patches:
if [ "reverse-patches" != "reverse-patches" ]; then touch debian/stamp-patched; fi
@@ -458,41 +630,25 @@ if test -d src; then \
fi
rm -f config.log config.status
debian/rules build
-Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
-Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
-Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
-Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
test -x debian/rules
mkdir -p "."
/usr/bin/make -f debian/rules reverse-config
-Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
-Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
-Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
-Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
-make[1]: Entering directory `/build/buildd-r-bioc-limma_3.8.2-1-mipsel-moivXA/r-bioc-limma-3.8.2'
+make[1]: Entering directory `/build/buildd-r-bioc-limma_3.8.3-1-mipsel-srTuXk/r-bioc-limma-3.8.3'
make[1]: Nothing to be done for `reverse-config'.
-make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.8.2-1-mipsel-moivXA/r-bioc-limma-3.8.2'
+make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.8.3-1-mipsel-srTuXk/r-bioc-limma-3.8.3'
if [ "debian/stamp-patched" = "reverse-patches" ]; then rm -f debian/stamp-patched; fi
patches:
if [ "debian/stamp-patched" != "reverse-patches" ]; then touch debian/stamp-patched; fi
if [ "debian/stamp-patched" != "reverse-patches" ] ; then \
/usr/bin/make -f debian/rules update-config ; \
fi
-Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
-Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
-Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
-Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
-make[1]: Entering directory `/build/buildd-r-bioc-limma_3.8.2-1-mipsel-moivXA/r-bioc-limma-3.8.2'
+make[1]: Entering directory `/build/buildd-r-bioc-limma_3.8.3-1-mipsel-srTuXk/r-bioc-limma-3.8.3'
make[1]: Nothing to be done for `update-config'.
-make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.8.2-1-mipsel-moivXA/r-bioc-limma-3.8.2'
+make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.8.3-1-mipsel-srTuXk/r-bioc-limma-3.8.3'
fakeroot debian/rules binary-arch
-Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
-Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
-Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
-Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
test -x debian/rules
dh_testroot
@@ -501,24 +657,24 @@ dh_installdirs -A
mkdir -p "."
dh_installdirs usr/lib/R/site-library
if test -f /usr/bin/xvfb-run; then \
- xvfb-run \
- R CMD INSTALL -l /build/buildd-r-bioc-limma_3.8.2-1-mipsel-moivXA/r-bioc-limma-3.8.2/debian/r-bioc-limma/usr/lib/R/site-library --clean \
+ xvfb-run -a \
+ R CMD INSTALL -l /build/buildd-r-bioc-limma_3.8.3-1-mipsel-srTuXk/r-bioc-limma-3.8.3/debian/r-bioc-limma/usr/lib/R/site-library --clean \
. ; \
else \
- R CMD INSTALL -l /build/buildd-r-bioc-limma_3.8.2-1-mipsel-moivXA/r-bioc-limma-3.8.2/debian/r-bioc-limma/usr/lib/R/site-library \
+ R CMD INSTALL -l /build/buildd-r-bioc-limma_3.8.3-1-mipsel-srTuXk/r-bioc-limma-3.8.3/debian/r-bioc-limma/usr/lib/R/site-library \
--clean . ;\
fi
* installing *source* package 'limma' ...
** libs
-make[1]: Entering directory `/build/buildd-r-bioc-limma_3.8.2-1-mipsel-moivXA/r-bioc-limma-3.8.2/src'
+make[1]: Entering directory `/build/buildd-r-bioc-limma_3.8.3-1-mipsel-srTuXk/r-bioc-limma-3.8.3/src'
gcc -I/usr/share/R/include -fpic -std=gnu99 -g0 -g -c normexp.c -o normexp.o
normexp.c: In function 'fit_saddle_nelder_mead':
normexp.c:153:3: warning: floating constant exceeds range of 'double' [-Woverflow]
gcc -shared -o limma.so normexp.o -L/usr/lib/R/lib -lR
-make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.8.2-1-mipsel-moivXA/r-bioc-limma-3.8.2/src'
-make[1]: Entering directory `/build/buildd-r-bioc-limma_3.8.2-1-mipsel-moivXA/r-bioc-limma-3.8.2/src'
-make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.8.2-1-mipsel-moivXA/r-bioc-limma-3.8.2/src'
-installing to /build/buildd-r-bioc-limma_3.8.2-1-mipsel-moivXA/r-bioc-limma-3.8.2/debian/r-bioc-limma/usr/lib/R/site-library/limma/libs
+make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.8.3-1-mipsel-srTuXk/r-bioc-limma-3.8.3/src'
+make[1]: Entering directory `/build/buildd-r-bioc-limma_3.8.3-1-mipsel-srTuXk/r-bioc-limma-3.8.3/src'
+make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.8.3-1-mipsel-srTuXk/r-bioc-limma-3.8.3/src'
+installing to /build/buildd-r-bioc-limma_3.8.3-1-mipsel-srTuXk/r-bioc-limma-3.8.3/debian/r-bioc-limma/usr/lib/R/site-library/limma/libs
** R
** inst
** preparing package for lazy loading
@@ -528,17 +684,17 @@ installing to /build/buildd-r-bioc-limma_3.8.2-1-mipsel-moivXA/r-bioc-limma-3.8.
** testing if installed package can be loaded
* DONE (limma)
-rm -vf /build/buildd-r-bioc-limma_3.8.2-1-mipsel-moivXA/r-bioc-limma-3.8.2/debian/r-bioc-limma/usr/lib/R/site-library/R.css \
- /build/buildd-r-bioc-limma_3.8.2-1-mipsel-moivXA/r-bioc-limma-3.8.2/debian/r-bioc-limma/usr/lib/R/site-library/limma/COPYING \
- /build/buildd-r-bioc-limma_3.8.2-1-mipsel-moivXA/r-bioc-limma-3.8.2/debian/r-bioc-limma/usr/lib/R/site-library/limma/LICENSE.txt
+rm -vf /build/buildd-r-bioc-limma_3.8.3-1-mipsel-srTuXk/r-bioc-limma-3.8.3/debian/r-bioc-limma/usr/lib/R/site-library/R.css \
+ /build/buildd-r-bioc-limma_3.8.3-1-mipsel-srTuXk/r-bioc-limma-3.8.3/debian/r-bioc-limma/usr/lib/R/site-library/limma/COPYING \
+ /build/buildd-r-bioc-limma_3.8.3-1-mipsel-srTuXk/r-bioc-limma-3.8.3/debian/r-bioc-limma/usr/lib/R/site-library/limma/LICENSE.txt
if test -f debian/overrides; then \
- install -d /build/buildd-r-bioc-limma_3.8.2-1-mipsel-moivXA/r-bioc-limma-3.8.2/debian/r-bioc-limma/usr/share/lintian/overrides ; \
+ install -d /build/buildd-r-bioc-limma_3.8.3-1-mipsel-srTuXk/r-bioc-limma-3.8.3/debian/r-bioc-limma/usr/share/lintian/overrides ; \
install -m 0644 debian/overrides \
- /build/buildd-r-bioc-limma_3.8.2-1-mipsel-moivXA/r-bioc-limma-3.8.2/debian/r-bioc-limma/usr/share/lintian/overrides/r-bioc-limma; \
+ /build/buildd-r-bioc-limma_3.8.3-1-mipsel-srTuXk/r-bioc-limma-3.8.3/debian/r-bioc-limma/usr/share/lintian/overrides/r-bioc-limma; \
fi
Adding cdbs dependencies to debian/r-bioc-limma.substvars
dh_installdirs -pr-bioc-limma
-echo "R:Depends=r-base-core (>= 2.13.0~)" >> debian/r-bioc-limma.substvars
+echo "R:Depends=r-base-core (>= 2.13.1~)" >> debian/r-bioc-limma.substvars
dh_installdocs -pr-bioc-limma
dh_installexamples -pr-bioc-limma
dh_installman -pr-bioc-limma
@@ -570,58 +726,58 @@ dh_shlibdeps -pr-bioc-limma
dh_gencontrol -pr-bioc-limma
dh_md5sums -pr-bioc-limma
dh_builddeb -pr-bioc-limma
-dpkg-deb: building package `r-bioc-limma' in `../r-bioc-limma_3.8.2-1_mipsel.deb'.
- dpkg-genchanges -B -mmipsel Build Daemon (mayer) <buildd_mips-mayer at buildd.debian.org> >../r-bioc-limma_3.8.2-1_mipsel.changes
+dpkg-deb: building package `r-bioc-limma' in `../r-bioc-limma_3.8.3-1_mipsel.deb'.
+ dpkg-genchanges -B -mmipsel Build Daemon (monteverdi) <buildd_mipsel-monteverdi at buildd.debian.org> >../r-bioc-limma_3.8.3-1_mipsel.changes
dpkg-genchanges: arch-specific upload - not including arch-independent packages
dpkg-genchanges: binary-only upload - not including any source code
- dpkg-source --after-build r-bioc-limma-3.8.2
+ dpkg-source --after-build r-bioc-limma-3.8.3
dpkg-buildpackage: binary only upload (no source included)
────────────────────────────────────────────────────────────────────────────────
-Build finished at 20110602-1456
+Build finished at 20110814-1223
-r-bioc-limma_3.8.2-1_mipsel.changes:
+r-bioc-limma_3.8.3-1_mipsel.changes:
Format: 1.8
-Date: Thu, 02 Jun 2011 13:07:58 +0900
+Date: Sun, 14 Aug 2011 20:30:21 +0900
Source: r-bioc-limma
Binary: r-bioc-limma
Architecture: mipsel
-Version: 3.8.2-1
+Version: 3.8.3-1
Distribution: sid
Urgency: low
-Maintainer: mipsel Build Daemon (mayer) <buildd_mips-mayer at buildd.debian.org>
+Maintainer: mipsel Build Daemon (monteverdi) <buildd_mipsel-monteverdi at buildd.debian.org>
Changed-By: Charles Plessy <plessy at debian.org>
Description:
r-bioc-limma - linear models for microarray data
-Closes: 628548
Changes:
- r-bioc-limma (3.8.2-1) unstable; urgency=low
+ r-bioc-limma (3.8.3-1) unstable; urgency=low
.
- * Initial release (closes: #628548).
+ * New upstream release.
+ * [e891bb6b] Corrected VCS-Git url.
Checksums-Sha1:
- 8d7ceca74471012a8fa7e0007e480d191902fd7e 1394492 r-bioc-limma_3.8.2-1_mipsel.deb
+ 8f92784a8880ea765d8e8174f3d0a82bd7f2272c 1399324 r-bioc-limma_3.8.3-1_mipsel.deb
Checksums-Sha256:
- eea27353a6da5b2efc3ca142b982d098d9a625b2ca0a17011809ba896d740c34 1394492 r-bioc-limma_3.8.2-1_mipsel.deb
+ 5bc27d90999dd24ed3c422482db4f1c7dc5302af6e9b862a4000125b1af88b66 1399324 r-bioc-limma_3.8.3-1_mipsel.deb
Files:
- 35d3a73acc9fbca7ad144743315168ef 1394492 gnu-r optional r-bioc-limma_3.8.2-1_mipsel.deb
+ c79c6f2720e8d5a2013548df9e0debc7 1399324 gnu-r optional r-bioc-limma_3.8.3-1_mipsel.deb
┌──────────────────────────────────────────────────────────────────────────────┐
│ Package contents │
└──────────────────────────────────────────────────────────────────────────────┘
-r-bioc-limma_3.8.2-1_mipsel.deb
+r-bioc-limma_3.8.3-1_mipsel.deb
───────────────────────────────
new debian package, version 2.0.
- size 1394492 bytes: control archive= 1510 bytes.
+ size 1399324 bytes: control archive= 1513 bytes.
768 bytes, 16 lines control
2226 bytes, 29 lines md5sums
Package: r-bioc-limma
- Version: 3.8.2-1
+ Version: 3.8.3-1
Architecture: mipsel
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
Installed-Size: 1676
- Depends: libc6 (>= 2.2), r-base-core (>= 2.13.0~)
+ Depends: libc6 (>= 2.2), r-base-core (>= 2.13.1~)
Section: gnu-r
Priority: optional
Homepage: http://bioinf.wehi.edu.au/limma/
@@ -633,50 +789,50 @@ r-bioc-limma_3.8.2-1_mipsel.deb
apply to all array platforms and treat Affymetrix, single channel and two
channel experiments in a unified way.
-drwxr-xr-x root/root 0 2011-06-02 14:56 ./
-drwxr-xr-x root/root 0 2011-06-02 14:56 ./usr/
-drwxr-xr-x root/root 0 2011-06-02 14:55 ./usr/lib/
-drwxr-xr-x root/root 0 2011-06-02 14:55 ./usr/lib/R/
-drwxr-xr-x root/root 0 2011-06-02 14:56 ./usr/lib/R/site-library/
-drwxr-xr-x root/root 0 2011-06-02 14:55 ./usr/lib/R/site-library/limma/
--rw-r--r-- root/root 1872 2011-06-02 14:55 ./usr/lib/R/site-library/limma/NAMESPACE
--rw-r--r-- root/root 1010 2011-06-02 14:55 ./usr/lib/R/site-library/limma/DESCRIPTION
-drwxr-xr-x root/root 0 2011-06-02 14:55 ./usr/lib/R/site-library/limma/Meta/
--rw-r--r-- root/root 1053 2011-06-02 14:55 ./usr/lib/R/site-library/limma/Meta/package.rds
--rw-r--r-- root/root 5946 2011-06-02 14:55 ./usr/lib/R/site-library/limma/Meta/Rd.rds
--rw-r--r-- root/root 5522 2011-06-02 14:55 ./usr/lib/R/site-library/limma/Meta/hsearch.rds
--rw-r--r-- root/root 2853 2011-06-02 14:55 ./usr/lib/R/site-library/limma/Meta/links.rds
--rw-r--r-- root/root 217 2011-06-02 14:55 ./usr/lib/R/site-library/limma/Meta/vignette.rds
--rw-r--r-- root/root 503 2011-06-02 14:55 ./usr/lib/R/site-library/limma/Meta/nsInfo.rds
-drwxr-xr-x root/root 0 2011-06-02 14:56 ./usr/lib/R/site-library/limma/libs/
--rw-r--r-- root/root 10704 2011-06-02 14:56 ./usr/lib/R/site-library/limma/libs/limma.so
-drwxr-xr-x root/root 0 2011-06-02 14:55 ./usr/lib/R/site-library/limma/R/
--rw-r--r-- root/root 384 2011-06-02 14:55 ./usr/lib/R/site-library/limma/R/limma
--rw-r--r-- root/root 172730 2011-06-02 14:55 ./usr/lib/R/site-library/limma/R/limma.rdb
--rw-r--r-- root/root 3737 2011-06-02 14:55 ./usr/lib/R/site-library/limma/R/limma.rdx
-drwxr-xr-x root/root 0 2011-06-02 14:55 ./usr/lib/R/site-library/limma/doc/
--rwxr-xr-x root/root 84633 2011-06-02 14:55 ./usr/lib/R/site-library/limma/doc/changelog.txt
--rwxr-xr-x root/root 673 2011-06-02 14:55 ./usr/lib/R/site-library/limma/doc/index.html
--rwxr-xr-x root/root 1711 2011-06-02 14:55 ./usr/lib/R/site-library/limma/doc/limma.Rnw
--rw-r--r-- root/root 45616 2011-06-02 14:55 ./usr/lib/R/site-library/limma/doc/limma.pdf
--rw-r--r-- root/root 687780 2011-06-02 14:55 ./usr/lib/R/site-library/limma/doc/usersguide.pdf
--rwxr-xr-x root/root 1230 2011-06-02 14:55 ./usr/lib/R/site-library/limma/CITATION
-drwxr-xr-x root/root 0 2011-06-02 14:55 ./usr/lib/R/site-library/limma/help/
--rw-r--r-- root/root 1344 2011-06-02 14:55 ./usr/lib/R/site-library/limma/help/paths.rds
--rw-r--r-- root/root 449906 2011-06-02 14:55 ./usr/lib/R/site-library/limma/help/limma.rdb
--rw-r--r-- root/root 3252 2011-06-02 14:55 ./usr/lib/R/site-library/limma/help/limma.rdx
--rw-r--r-- root/root 6150 2011-06-02 14:55 ./usr/lib/R/site-library/limma/help/AnIndex
--rw-r--r-- root/root 2361 2011-06-02 14:55 ./usr/lib/R/site-library/limma/help/aliases.rds
-drwxr-xr-x root/root 0 2011-06-02 14:55 ./usr/lib/R/site-library/limma/html/
--rw-r--r-- root/root 34039 2011-06-02 14:55 ./usr/lib/R/site-library/limma/html/00Index.html
--rw-r--r-- root/root 1179 2011-06-02 14:55 ./usr/lib/R/site-library/limma/html/R.css
--rw-r--r-- root/root 9360 2011-06-02 14:55 ./usr/lib/R/site-library/limma/INDEX
-drwxr-xr-x root/root 0 2011-06-02 14:56 ./usr/share/
-drwxr-xr-x root/root 0 2011-06-02 14:56 ./usr/share/doc/
-drwxr-xr-x root/root 0 2011-06-02 14:56 ./usr/share/doc/r-bioc-limma/
--rw-r--r-- root/root 2116 2011-06-02 14:54 ./usr/share/doc/r-bioc-limma/copyright
--rw-r--r-- root/root 25983 2011-05-20 04:14 ./usr/share/doc/r-bioc-limma/changelog.gz
--rw-r--r-- root/root 161 2011-06-02 14:54 ./usr/share/doc/r-bioc-limma/changelog.Debian.gz
+drwxr-xr-x root/root 0 2011-08-14 12:23 ./
+drwxr-xr-x root/root 0 2011-08-14 12:23 ./usr/
+drwxr-xr-x root/root 0 2011-08-14 12:22 ./usr/lib/
+drwxr-xr-x root/root 0 2011-08-14 12:22 ./usr/lib/R/
+drwxr-xr-x root/root 0 2011-08-14 12:23 ./usr/lib/R/site-library/
+drwxr-xr-x root/root 0 2011-08-14 12:22 ./usr/lib/R/site-library/limma/
+drwxr-xr-x root/root 0 2011-08-14 12:22 ./usr/lib/R/site-library/limma/doc/
+-rwxr-xr-x root/root 673 2011-08-14 12:22 ./usr/lib/R/site-library/limma/doc/index.html
+-rw-r--r-- root/root 687780 2011-08-14 12:22 ./usr/lib/R/site-library/limma/doc/usersguide.pdf
+-rw-r--r-- root/root 45616 2011-08-14 12:22 ./usr/lib/R/site-library/limma/doc/limma.pdf
+-rwxr-xr-x root/root 84899 2011-08-14 12:22 ./usr/lib/R/site-library/limma/doc/changelog.txt
+-rwxr-xr-x root/root 1711 2011-08-14 12:22 ./usr/lib/R/site-library/limma/doc/limma.Rnw
+drwxr-xr-x root/root 0 2011-08-14 12:22 ./usr/lib/R/site-library/limma/html/
+-rw-r--r-- root/root 34039 2011-08-14 12:22 ./usr/lib/R/site-library/limma/html/00Index.html
+-rw-r--r-- root/root 1179 2011-08-14 12:22 ./usr/lib/R/site-library/limma/html/R.css
+drwxr-xr-x root/root 0 2011-08-14 12:23 ./usr/lib/R/site-library/limma/libs/
+-rw-r--r-- root/root 10704 2011-08-14 12:23 ./usr/lib/R/site-library/limma/libs/limma.so
+drwxr-xr-x root/root 0 2011-08-14 12:22 ./usr/lib/R/site-library/limma/help/
+-rw-r--r-- root/root 3258 2011-08-14 12:22 ./usr/lib/R/site-library/limma/help/limma.rdx
+-rw-r--r-- root/root 1345 2011-08-14 12:22 ./usr/lib/R/site-library/limma/help/paths.rds
+-rw-r--r-- root/root 6150 2011-08-14 12:22 ./usr/lib/R/site-library/limma/help/AnIndex
+-rw-r--r-- root/root 450060 2011-08-14 12:22 ./usr/lib/R/site-library/limma/help/limma.rdb
+-rw-r--r-- root/root 2363 2011-08-14 12:22 ./usr/lib/R/site-library/limma/help/aliases.rds
+drwxr-xr-x root/root 0 2011-08-14 12:22 ./usr/lib/R/site-library/limma/Meta/
+-rw-r--r-- root/root 2854 2011-08-14 12:22 ./usr/lib/R/site-library/limma/Meta/links.rds
+-rw-r--r-- root/root 217 2011-08-14 12:22 ./usr/lib/R/site-library/limma/Meta/vignette.rds
+-rw-r--r-- root/root 5947 2011-08-14 12:22 ./usr/lib/R/site-library/limma/Meta/Rd.rds
+-rw-r--r-- root/root 5524 2011-08-14 12:22 ./usr/lib/R/site-library/limma/Meta/hsearch.rds
+-rw-r--r-- root/root 505 2011-08-14 12:22 ./usr/lib/R/site-library/limma/Meta/nsInfo.rds
+-rw-r--r-- root/root 1054 2011-08-14 12:22 ./usr/lib/R/site-library/limma/Meta/package.rds
+drwxr-xr-x root/root 0 2011-08-14 12:22 ./usr/lib/R/site-library/limma/R/
+-rw-r--r-- root/root 384 2011-08-14 12:22 ./usr/lib/R/site-library/limma/R/limma
+-rw-r--r-- root/root 3743 2011-08-14 12:22 ./usr/lib/R/site-library/limma/R/limma.rdx
+-rw-r--r-- root/root 173272 2011-08-14 12:22 ./usr/lib/R/site-library/limma/R/limma.rdb
+-rw-r--r-- root/root 1872 2011-08-14 12:22 ./usr/lib/R/site-library/limma/NAMESPACE
+-rw-r--r-- root/root 9360 2011-08-14 12:22 ./usr/lib/R/site-library/limma/INDEX
+-rw-r--r-- root/root 1010 2011-08-14 12:22 ./usr/lib/R/site-library/limma/DESCRIPTION
+-rwxr-xr-x root/root 1230 2011-08-14 12:22 ./usr/lib/R/site-library/limma/CITATION
+drwxr-xr-x root/root 0 2011-08-14 12:23 ./usr/share/
+drwxr-xr-x root/root 0 2011-08-14 12:23 ./usr/share/doc/
+drwxr-xr-x root/root 0 2011-08-14 12:23 ./usr/share/doc/r-bioc-limma/
+-rw-r--r-- root/root 26050 2011-08-08 16:14 ./usr/share/doc/r-bioc-limma/changelog.gz
+-rw-r--r-- root/root 2117 2011-08-14 12:21 ./usr/share/doc/r-bioc-limma/copyright
+-rw-r--r-- root/root 234 2011-08-14 12:21 ./usr/share/doc/r-bioc-limma/changelog.Debian.gz
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -690,145 +846,26 @@ Built successfully
│ Post Build │
└──────────────────────────────────────────────────────────────────────────────┘
-Purging /var/lib/schroot/mount/sid-mipsel-sbuild-79d9ad21-7925-4dc2-83b6-ba7403333e27/build/buildd-r-bioc-limma_3.8.2-1-mipsel-moivXA
-Reading package lists...
-Building dependency tree...
-Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 15 not upgraded.
-Reading package lists...
-Building dependency tree...
-Reading state information...
-The following packages will be REMOVED:
- cdbs* dpatch* fontconfig* fontconfig-config* gfortran* gfortran-4.6*
- libblas-dev* libblas3gf* libbz2-dev* libcairo2* libdatrie1* libexpat1*
- libfontconfig1* libfreetype6* libgfortran3* libice6* libjpeg62*
- libjpeg62-dev* liblapack-dev* liblapack3gf* libncurses5-dev* libpango1.0-0*
- libpaper-utils* libpaper1* libpcre3-dev* libpcrecpp0* libpixman-1-0*
- libpng12-0* libpng12-dev* libreadline-dev* libreadline6-dev* libsm6*
- libthai-data* libthai0* libtiff4* libx11-6* libx11-data* libxau6*
- libxcb-render0* libxcb-shm0* libxcb1* libxdmcp6* libxext6* libxft2*
- libxrender1* libxss1* libxt6* r-base-core* r-base-dev* tcl8.5* tk8.5*
- ttf-dejavu-core* ucf* unzip* x11-common* xdg-utils* zip* zlib1g-dev*
-0 upgraded, 0 newly installed, 58 to remove and 15 not upgraded.
-After this operation, 98.3 MB disk space will be freed.
-(Reading database ... 14873 files and directories currently installed.)
-Removing r-base-dev ...
-Removing cdbs ...
-Removing dpatch ...
-Purging configuration files for dpatch ...
-Removing r-base-core ...
-Purging configuration files for r-base-core ...
-Removing libpango1.0-0 ...
-Purging configuration files for libpango1.0-0 ...
-Removing fontconfig ...
-Purging configuration files for fontconfig ...
-Removing tk8.5 ...
-Purging configuration files for tk8.5 ...
-Removing libxft2 ...
-Purging configuration files for libxft2 ...
-Removing libcairo2 ...
-Purging configuration files for libcairo2 ...
-Removing libfontconfig1 ...
-Purging configuration files for libfontconfig1 ...
-Removing fontconfig-config ...
-Purging configuration files for fontconfig-config ...
-Removing gfortran ...
-Removing gfortran-4.6 ...
-Removing liblapack-dev ...
-Removing libblas-dev ...
-Removing liblapack3gf ...
-Purging configuration files for liblapack3gf ...
-Removing libblas3gf ...
-Purging configuration files for libblas3gf ...
-Removing libbz2-dev ...
-Removing libthai0 ...
-Purging configuration files for libthai0 ...
-Removing libdatrie1 ...
-Purging configuration files for libdatrie1 ...
-Removing libexpat1 ...
-Purging configuration files for libexpat1 ...
-Removing libfreetype6 ...
-Purging configuration files for libfreetype6 ...
-Removing libgfortran3 ...
-Purging configuration files for libgfortran3 ...
-Removing libxt6 ...
-Purging configuration files for libxt6 ...
-Removing libsm6 ...
-Purging configuration files for libsm6 ...
-Removing libice6 ...
-Purging configuration files for libice6 ...
-Removing libtiff4 ...
-Purging configuration files for libtiff4 ...
-Removing libjpeg62-dev ...
-Removing libjpeg62 ...
-Removing libreadline-dev ...
-Removing libreadline6-dev ...
-Removing libncurses5-dev ...
-Removing libpaper-utils ...
-Removing libpaper1 ...
-Purging configuration files for libpaper1 ...
-Removing libpcre3-dev ...
-Removing libpcrecpp0 ...
-Purging configuration files for libpcrecpp0 ...
-Removing libpixman-1-0 ...
-Purging configuration files for libpixman-1-0 ...
-Removing libpng12-dev ...
-Removing libpng12-0 ...
-Purging configuration files for libpng12-0 ...
-Removing libthai-data ...
-Removing libxss1 ...
-Purging configuration files for libxss1 ...
-Removing libxrender1 ...
-Purging configuration files for libxrender1 ...
-Removing libxext6 ...
-Purging configuration files for libxext6 ...
-Removing libx11-6 ...
-Purging configuration files for libx11-6 ...
-Removing libx11-data ...
-Removing libxcb-shm0 ...
-Purging configuration files for libxcb-shm0 ...
-Removing libxcb-render0 ...
-Purging configuration files for libxcb-render0 ...
-Removing libxcb1 ...
-Purging configuration files for libxcb1 ...
-Removing libxau6 ...
-Purging configuration files for libxau6 ...
-Removing libxdmcp6 ...
-Purging configuration files for libxdmcp6 ...
-Removing tcl8.5 ...
-Purging configuration files for tcl8.5 ...
-Removing ttf-dejavu-core ...
-Removing ucf ...
-Purging configuration files for ucf ...
-Removing unzip ...
-Purging configuration files for unzip ...
-Removing x11-common ...
-All runlevel operations denied by policy
-invoke-rc.d: policy-rc.d denied execution of stop.
-Purging configuration files for x11-common ...
-Removing xdg-utils ...
-Removing zip ...
-Removing zlib1g-dev ...
-Processing triggers for man-db ...
+Purging /var/lib/schroot/mount/sid-mipsel-sbuild-e35022f8-c753-492f-947e-8e272cf2abe5/build/buildd-r-bioc-limma_3.8.3-1-mipsel-srTuXk
+Not cleaning session: cloned chroot in use
┌──────────────────────────────────────────────────────────────────────────────┐
│ Summary │
└──────────────────────────────────────────────────────────────────────────────┘
Architecture: mipsel
-Build-Space: 5076
-Build-Time: 112
+Build-Space: 5080
+Build-Time: 129
Distribution: sid
-Install-Time: 92
-Job: r-bioc-limma_3.8.2-1
+Install-Time: 229
+Job: r-bioc-limma_3.8.3-1
Package: r-bioc-limma
-Package-Time: 223
-Source-Version: 3.8.2-1
-Space: 5076
+Package-Time: 625
+Source-Version: 3.8.3-1
+Space: 5080
Status: successful
-Version: 3.8.2-1
+Version: 3.8.3-1
────────────────────────────────────────────────────────────────────────────────
-Finished at 20110602-1456
-Build needed 00:03:43, 5076k disc space
-Signature with key '68D1B022' requested:
+Finished at 20110814-1223
+Build needed 00:10:25, 5080k disc space
diff --git a/powerpc.log b/powerpc.log
index 4d02ef0..498c37c 100644
--- a/powerpc.log
+++ b/powerpc.log
@@ -1,69 +1,69 @@
-From buildd at porpora.debian.org Thu Jun 02 13:32:05 2011
-Return-path: <buildd at porpora.debian.org>
+From buildd at poulenc.debian.org Sun Aug 14 12:19:53 2011
+Return-path: <buildd at poulenc.debian.org>
Received: from merikanto.debian.org ([2001:858:2:2:216:35ff:fec4:a49a])
from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
CN=merikanto.debian.org,
EMAIL=hostmaster at merikanto.debian.org (verified)
by grieg.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
- (Exim 4.72) (envelope-from <buildd at porpora.debian.org>)
- id 1QS80L-0007Od-HS
- for logs at buildd.debian.org; Thu, 02 Jun 2011 13:32:05 +0000
-Received: from porpora.ynic.york.ac.uk ([144.32.168.78]
- helo=porpora.debian.org)
+ (Exim 4.72) (envelope-from <buildd at poulenc.debian.org>)
+ id 1QsZfV-0006mv-EK
+ for logs at buildd.debian.org; Sun, 14 Aug 2011 12:19:53 +0000
+Received: from poulenc.ynic.york.ac.uk ([144.32.168.77]
+ helo=poulenc.debian.org)
from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
- CN=porpora.debian.org, EMAIL=hostmaster at porpora.debian.org (verified)
+ CN=poulenc.debian.org, EMAIL=hostmaster at poulenc.debian.org (verified)
by merikanto.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
- (Exim 4.72) (envelope-from <buildd at porpora.debian.org>)
- id 1QS80K-00074V-BW; Thu, 02 Jun 2011 13:32:04 +0000
-Received: from buildd by porpora.debian.org with local (Exim 4.72)
- (envelope-from <buildd at porpora.debian.org>)
- id 1QS80J-0004m0-Ku; Thu, 02 Jun 2011 13:32:03 +0000
-Message-Id: <E1QS80J-0004m0-Ku at porpora.debian.org>
+ (Exim 4.72) (envelope-from <buildd at poulenc.debian.org>)
+ id 1QsZfT-0005jQ-WF; Sun, 14 Aug 2011 12:19:52 +0000
+Received: from buildd by poulenc.debian.org with local (Exim 4.72)
+ (envelope-from <buildd at poulenc.debian.org>)
+ id 1QsZfT-0001kD-Eq; Sun, 14 Aug 2011 12:19:51 +0000
+Message-Id: <E1QsZfT-0001kD-Eq at poulenc.debian.org>
MIME-Version: 1.0
Content-Transfer-Encoding: binary
X-Mailer: MIME::Lite 3.027 (F2.77; B3.08; Q3.08)
-Date: Thu, 2 Jun 2011 13:32:03 +0000
-From: buildd on porpora <buildd at porpora.debian.org>
+Date: Sun, 14 Aug 2011 12:19:51 +0000
+From: buildd on poulenc <buildd at poulenc.debian.org>
To: phil+buildd at philkern.de,logs at buildd.debian.org
-Subject: Log for successful build of r-bioc-limma_3.8.2-1 on powerpc (dist=sid)
-Key-Id: CDFA0A89
+Subject: Log for successful build of r-bioc-limma_3.8.3-1 on powerpc (dist=sid)
+Key-Id: 779E1DD6
Delivered-To: logs at buildd.debian.org
-sbuild (Debian sbuild) 0.61.0 (23 Feb 2011) on porpora.debian.org
+sbuild (Debian sbuild) 0.61.0 (23 Feb 2011) on poulenc.debian.org
╔══════════════════════════════════════════════════════════════════════════════╗
-║ r-bioc-limma 3.8.2-1 (powerpc) 02 Jun 2011 13:28 ║
+║ r-bioc-limma 3.8.3-1 (powerpc) 14 Aug 2011 12:15 ║
╚══════════════════════════════════════════════════════════════════════════════╝
Package: r-bioc-limma
-Version: 3.8.2-1
-Source Version: 3.8.2-1
+Version: 3.8.3-1
+Source Version: 3.8.3-1
Architecture: powerpc
Get:1 http://ftp.uk.debian.org unstable InRelease [146 kB]
-Get:2 http://ftp.uk.debian.org unstable/main Sources [5270 kB]
-Get:3 http://incoming.debian.org unstable InRelease [146 kB]
-Get:4 http://ftp.uk.debian.org unstable/contrib Sources [49.7 kB]
-Get:5 http://ftp.uk.debian.org unstable/non-free Sources [92.2 kB]
-Get:6 http://ftp.uk.debian.org unstable/main powerpc Packages [7269 kB]
+Get:2 http://incoming.debian.org unstable InRelease [146 kB]
+Get:3 http://ftp.uk.debian.org unstable/main Sources [5431 kB]
Ign http://incoming.debian.org InRelease
-Get:7 http://incoming.debian.org Release.gpg [836 B]
-Get:8 http://incoming.debian.org unstable/main Sources [5270 kB]
-Get:9 http://ftp.uk.debian.org unstable/contrib powerpc Packages [54.0 kB]
+Get:4 http://incoming.debian.org Release.gpg [836 B]
+Get:5 http://incoming.debian.org unstable/main Sources [5431 kB]
+Get:6 http://ftp.uk.debian.org unstable/contrib Sources [52.5 kB]
+Get:7 http://ftp.uk.debian.org unstable/non-free Sources [95.7 kB]
+Get:8 http://ftp.uk.debian.org unstable/main powerpc Packages [7498 kB]
+Get:9 http://ftp.uk.debian.org unstable/contrib powerpc Packages [54.7 kB]
Ign http://ftp.uk.debian.org unstable/contrib TranslationIndex
-Get:10 http://ftp.uk.debian.org unstable/main TranslationIndex [2264 B]
+Get:10 http://ftp.uk.debian.org unstable/main TranslationIndex [2185 B]
Ign http://ftp.uk.debian.org unstable/contrib Translation-en
-Get:11 http://incoming.debian.org unstable/contrib Sources [49.7 kB]
-Get:12 http://incoming.debian.org unstable/non-free Sources [92.2 kB]
-Get:13 http://incoming.debian.org unstable/main powerpc Packages [7269 kB]
-Get:14 http://incoming.debian.org unstable/contrib powerpc Packages [54.0 kB]
+Get:11 http://incoming.debian.org unstable/contrib Sources [52.5 kB]
+Get:12 http://incoming.debian.org unstable/non-free Sources [95.7 kB]
+Get:13 http://incoming.debian.org unstable/main powerpc Packages [7498 kB]
+Get:14 http://incoming.debian.org unstable/contrib powerpc Packages [54.7 kB]
Ign http://incoming.debian.org unstable/contrib TranslationIndex
-Get:15 http://incoming.debian.org unstable/main TranslationIndex [2264 B]
+Get:15 http://incoming.debian.org unstable/main TranslationIndex [2185 B]
Get:16 http://incoming.debian.org Release [1604 B]
-Get:17 http://incoming.debian.org Sources [35.2 kB]
-Get:18 http://incoming.debian.org Packages [360 kB]
+Get:17 http://incoming.debian.org Sources [25.0 kB]
+Get:18 http://incoming.debian.org Packages [110 kB]
Ign http://incoming.debian.org unstable/contrib Translation-en
Ign http://incoming.debian.org Translation-en
-Fetched 26.2 MB in 37s (694 kB/s)
+Fetched 26.7 MB in 22s (1213 kB/s)
Reading package lists...
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -81,13 +81,14 @@ Download source files with APT
Reading package lists...
Building dependency tree...
+Reading state information...
NOTICE: 'r-bioc-limma' packaging is maintained in the 'Git' version control system at:
-git://anonscm.debian.org/debian-med/r-bioc-limma.git
+git://git.debian.org/git/debian-med/r-bioc-limma.git
Need to get 921 kB of source archives.
-Get:1 http://incoming.debian.org/buildd-unstable/ r-bioc-limma 3.8.2-1 (dsc) [1931 B]
-Get:2 http://incoming.debian.org/buildd-unstable/ r-bioc-limma 3.8.2-1 (tar) [917 kB]
-Get:3 http://incoming.debian.org/buildd-unstable/ r-bioc-limma 3.8.2-1 (diff) [2158 B]
-Fetched 921 kB in 2s (421 kB/s)
+Get:1 http://incoming.debian.org/buildd-unstable/ r-bioc-limma 3.8.3-1 (dsc) [1931 B]
+Get:2 http://incoming.debian.org/buildd-unstable/ r-bioc-limma 3.8.3-1 (tar) [917 kB]
+Get:3 http://incoming.debian.org/buildd-unstable/ r-bioc-limma 3.8.3-1 (diff) [2212 B]
+Fetched 921 kB in 1s (470 kB/s)
Download complete and in download only mode
Check arch
@@ -101,16 +102,18 @@ Check arch
Build-Depends: build-essential, fakeroot
Checking for already installed dependencies...
build-essential: already installed (11.5)
-fakeroot: already installed (1.15.1-1)
+fakeroot: already installed (1.16-1)
Checking for dependency conflicts...
Installing positive dependencies:
Reading package lists...
Building dependency tree...
-0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded.
+Reading state information...
+0 upgraded, 0 newly installed, 0 to remove and 27 not upgraded.
Removing negative dependencies:
Reading package lists...
Building dependency tree...
-0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded.
+Reading state information...
+0 upgraded, 0 newly installed, 0 to remove and 27 not upgraded.
Checking correctness of dependencies...
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -120,63 +123,67 @@ Checking correctness of dependencies...
Build-Depends: base-files, base-passwd, bash, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, ncurses-base, ncurses-bin, perl-base, sed, login, sysvinit-utils, sysvinit, tar, bsdutils, mount, util-linux, libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 8), cdbs, r-base-dev (>= 2.10.0)
Checking for already installed dependencies...
base-files: already installed (6.4)
-base-passwd: already installed (3.5.22)
+base-passwd: already installed (3.5.23)
bash: already installed (4.1-3)
coreutils: already installed (8.5-1)
dash: already installed (0.5.5.1-7.4)
-debianutils: already installed (4.0.1)
+debianutils: already installed (4.0.2)
diffutils: already installed (1:3.0-1)
dpkg: already installed (1.16.0.3)
-e2fsprogs: already installed (1.41.12-4)
+e2fsprogs: already installed (1.42~WIP-2011-07-02-1)
findutils: already installed (4.4.2-1+b1)
-grep: already installed (2.6.3-3)
-gzip: already installed (1.3.12-9)
+grep: already installed (2.9-1)
+gzip: already installed (1.4-1)
hostname: already installed (3.06)
ncurses-base: already installed (5.9-1)
ncurses-bin: already installed (5.9-1)
-perl-base: already installed (5.12.3-7)
+perl-base: already installed (5.12.4-1)
sed: already installed (4.2.1-9)
login: already installed (1:4.1.4.2+svn3283-3)
-sysvinit-utils: already installed (2.88dsf-13.7)
-sysvinit: already installed (2.88dsf-13.7)
+sysvinit-utils: already installed (2.88dsf-13.11)
+sysvinit: already installed (2.88dsf-13.11)
tar: already installed (1.25-3)
-bsdutils: already installed (1:2.17.2-9.1)
-mount: already installed (2.17.2-9.1)
-util-linux: already installed (2.17.2-9.1)
-libc6-dev: already installed (2.13-4)
-gcc: already installed (4:4.6.0-5 >= 4:4.4.3 is satisfied)
-g++: already installed (4:4.6.0-5 >= 4:4.4.3 is satisfied)
+bsdutils: already installed (1:2.19.1-4)
+mount: already installed (2.19.1-4)
+util-linux: already installed (2.19.1-4)
+libc6-dev: already installed (2.13-10)
+gcc: already installed (4:4.6.1-2 >= 4:4.4.3 is satisfied)
+g++: already installed (4:4.6.1-2 >= 4:4.4.3 is satisfied)
make: already installed (3.81-8.1)
dpkg-dev: already installed (1.16.0.3 >= 1.13.5 is satisfied)
debhelper: missing
-Using default version 8.1.6
+Using default version 8.9.4
cdbs: missing
r-base-dev: missing
-Using default version 2.13.0-2
+Using default version 2.13.1-1
Checking for dependency conflicts...
Installing positive dependencies: debhelper cdbs r-base-dev
Reading package lists...
Building dependency tree...
+Reading state information...
The following extra packages will be installed:
- bsdmainutils dpatch file fontconfig fontconfig-config gettext gettext-base
- gfortran gfortran-4.6 groff-base html2text intltool-debian libblas-dev
- libblas3gf libbz2-dev libcairo2 libcroco3 libdatrie1 libexpat1
- libfontconfig1 libfreetype6 libgfortran3 libglib2.0-0 libice6 libjpeg62
- libjpeg62-dev liblapack-dev liblapack3gf libmagic1 libncurses5-dev
- libpango1.0-0 libpaper-utils libpaper1 libpcre3 libpcre3-dev libpcrecpp0
- libpipeline1 libpixman-1-0 libpng12-0 libpng12-dev libreadline-dev
- libreadline6-dev libsm6 libthai-data libthai0 libtiff4 libunistring0
- libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6
- libxext6 libxft2 libxml2 libxrender1 libxss1 libxt6 man-db po-debconf
- r-base-core tcl8.5 tk8.5 ttf-dejavu-core ucf unzip x11-common xdg-utils zip
- zlib1g-dev
+ bsdmainutils cpp-4.6 dpatch file fontconfig fontconfig-config g++-4.6
+ gcc-4.6 gcc-4.6-base gettext gettext-base gfortran gfortran-4.6 groff-base
+ html2text intltool-debian libblas-dev libblas3gf libbz2-dev libcairo2
+ libcroco3 libdatrie1 libexpat1 libfontconfig1 libfreetype6 libgcc1
+ libgfortran3 libglib2.0-0 libgomp1 libice6 libjpeg62 libjpeg8 libjpeg8-dev
+ liblapack-dev liblapack3gf libmagic1 libncurses5-dev libpango1.0-0
+ libpaper-utils libpaper1 libpcre3 libpcre3-dev libpcrecpp0 libpipeline1
+ libpixman-1-0 libpng12-0 libpng12-dev libreadline-dev libreadline6-dev
+ libsm6 libstdc++6 libstdc++6-4.6-dev libthai-data libthai0 libtiff4
+ libunistring0 libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0
+ libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxrender1 libxss1 libxt6 man-db
+ po-debconf r-base-core tcl8.5 tk8.5 ttf-dejavu-core ucf unzip x11-common
+ xdg-utils zip zlib1g-dev
Suggested packages:
- wamerican wordlist whois vacation devscripts dh-make curl defoma gettext-doc
- gfortran-multilib gfortran-doc gfortran-4.6-multilib gfortran-4.6-doc
- libgfortran3-dbg groff ncurses-doc ttf-baekmuk ttf-arphic-gbsn00lp
- ttf-arphic-bsmi00lp ttf-arphic-gkai00mp ttf-arphic-bkai00mp less www-browser
- libmail-box-perl r-doc-info r-doc-pdf r-mathlib r-base-html tclreadline
- gvfs-bin
+ wamerican wordlist whois vacation devscripts gcc-4.6-locales dh-make curl
+ defoma g++-4.6-multilib gcc-4.6-doc libstdc++6-4.6-dbg gcc-4.6-multilib
+ libmudflap0-4.6-dev libgcc1-dbg libgomp1-dbg libquadmath-dbg libmudflap0-dbg
+ binutils-gold gettext-doc gfortran-multilib gfortran-doc
+ gfortran-4.6-multilib gfortran-4.6-doc libgfortran3-dbg groff ncurses-doc
+ ttf-baekmuk ttf-arphic-gbsn00lp ttf-arphic-bsmi00lp ttf-arphic-gkai00mp
+ ttf-arphic-bkai00mp libstdc++6-4.6-doc less www-browser libmail-box-perl
+ r-doc-info r-doc-pdf r-mathlib r-base-html tclreadline gvfs-bin
Recommended packages:
autotools-dev patchutils autopoint libglib2.0-data shared-mime-info
x-ttcidfont-conf xml-core libmail-sendmail-perl r-recommended r-doc-html
@@ -186,7 +193,7 @@ The following NEW packages will be installed:
gettext-base gfortran gfortran-4.6 groff-base html2text intltool-debian
libblas-dev libblas3gf libbz2-dev libcairo2 libcroco3 libdatrie1 libexpat1
libfontconfig1 libfreetype6 libgfortran3 libglib2.0-0 libice6 libjpeg62
- libjpeg62-dev liblapack-dev liblapack3gf libmagic1 libncurses5-dev
+ libjpeg8 libjpeg8-dev liblapack-dev liblapack3gf libmagic1 libncurses5-dev
libpango1.0-0 libpaper-utils libpaper1 libpcre3 libpcre3-dev libpcrecpp0
libpipeline1 libpixman-1-0 libpng12-0 libpng12-dev libreadline-dev
libreadline6-dev libsm6 libthai-data libthai0 libtiff4 libunistring0
@@ -194,342 +201,384 @@ The following NEW packages will be installed:
libxext6 libxft2 libxml2 libxrender1 libxss1 libxt6 man-db po-debconf
r-base-core r-base-dev tcl8.5 tk8.5 ttf-dejavu-core ucf unzip x11-common
xdg-utils zip zlib1g-dev
-0 upgraded, 75 newly installed, 0 to remove and 1 not upgraded.
-Need to get 50.9 MB of archives.
+The following packages will be upgraded:
+ cpp-4.6 g++-4.6 gcc-4.6 gcc-4.6-base libgcc1 libgomp1 libstdc++6
+ libstdc++6-4.6-dev
+8 upgraded, 76 newly installed, 0 to remove and 19 not upgraded.
+Need to get 69.6 MB of archives.
After this operation, 121 MB of additional disk space will be used.
-Get:1 http://ftp.uk.debian.org/debian/ unstable/main bsdmainutils powerpc 8.2.2 [209 kB]
-Get:2 http://ftp.uk.debian.org/debian/ unstable/main groff-base powerpc 1.21-5 [1189 kB]
-Get:3 http://ftp.uk.debian.org/debian/ unstable/main libpipeline1 powerpc 1.2.0-2 [37.3 kB]
-Get:4 http://ftp.uk.debian.org/debian/ unstable/main man-db powerpc 2.6.0.2-1 [1020 kB]
-Get:5 http://ftp.uk.debian.org/debian/ unstable/main libmagic1 powerpc 5.04-5+b1 [240 kB]
-Get:6 http://ftp.uk.debian.org/debian/ unstable/main file powerpc 5.04-5+b1 [49.9 kB]
-Get:7 http://ftp.uk.debian.org/debian/ unstable/main gettext-base powerpc 0.18.1.1-3 [141 kB]
-Get:8 http://ftp.uk.debian.org/debian/ unstable/main libpcre3 powerpc 8.12-3 [258 kB]
-Get:9 http://ftp.uk.debian.org/debian/ unstable/main libxml2 powerpc 2.7.8.dfsg-2+b1 [853 kB]
-Get:10 http://ftp.uk.debian.org/debian/ unstable/main ucf all 3.0025+nmu2 [70.6 kB]
-Get:11 http://ftp.uk.debian.org/debian/ unstable/main html2text powerpc 1.3.2a-15 [105 kB]
-Get:12 http://ftp.uk.debian.org/debian/ unstable/main libglib2.0-0 powerpc 2.28.6-1 [1611 kB]
-Get:13 http://ftp.uk.debian.org/debian/ unstable/main libcroco3 powerpc 0.6.2-1 [128 kB]
-Get:14 http://ftp.uk.debian.org/debian/ unstable/main libunistring0 powerpc 0.9.3-4 [422 kB]
-Get:15 http://ftp.uk.debian.org/debian/ unstable/main gettext powerpc 0.18.1.1-3 [2046 kB]
-Get:16 http://ftp.uk.debian.org/debian/ unstable/main intltool-debian all 0.35.0+20060710.1 [30.8 kB]
-Get:17 http://ftp.uk.debian.org/debian/ unstable/main po-debconf all 1.0.16+nmu1 [223 kB]
-Get:18 http://ftp.uk.debian.org/debian/ unstable/main debhelper all 8.1.6 [557 kB]
-Get:19 http://ftp.uk.debian.org/debian/ unstable/main cdbs all 0.4.94 [75.5 kB]
-Get:20 http://ftp.uk.debian.org/debian/ unstable/main dpatch all 2.0.31 [92.3 kB]
-Get:21 http://ftp.uk.debian.org/debian/ unstable/main libexpat1 powerpc 2.0.1-7 [139 kB]
-Get:22 http://ftp.uk.debian.org/debian/ unstable/main libfreetype6 powerpc 2.4.4-1 [403 kB]
-Get:23 http://ftp.uk.debian.org/debian/ unstable/main ttf-dejavu-core all 2.33-1 [1550 kB]
-Get:24 http://ftp.uk.debian.org/debian/ unstable/main fontconfig-config all 2.8.0-2.2 [218 kB]
-Get:25 http://ftp.uk.debian.org/debian/ unstable/main libfontconfig1 powerpc 2.8.0-2.2 [284 kB]
-Get:26 http://ftp.uk.debian.org/debian/ unstable/main fontconfig powerpc 2.8.0-2.2 [334 kB]
-Get:27 http://ftp.uk.debian.org/debian/ unstable/main libgfortran3 powerpc 4.6.0-10 [281 kB]
-Get:28 http://ftp.uk.debian.org/debian/ unstable/main gfortran-4.6 powerpc 4.6.0-10 [5257 kB]
-Get:29 http://ftp.uk.debian.org/debian/ unstable/main gfortran powerpc 4:4.6.0-5 [1130 B]
-Get:30 http://ftp.uk.debian.org/debian/ unstable/main libblas3gf powerpc 1.2-8 [195 kB]
-Get:31 http://ftp.uk.debian.org/debian/ unstable/main libblas-dev powerpc 1.2-8 [215 kB]
-Get:32 http://ftp.uk.debian.org/debian/ unstable/main libbz2-dev powerpc 1.0.5-6 [38.5 kB]
-Get:33 http://ftp.uk.debian.org/debian/ unstable/main libpixman-1-0 powerpc 0.21.8-1 [349 kB]
-Get:34 http://ftp.uk.debian.org/debian/ unstable/main libpng12-0 powerpc 1.2.44-2 [179 kB]
-Get:35 http://ftp.uk.debian.org/debian/ unstable/main libxau6 powerpc 1:1.0.6-1 [16.7 kB]
-Get:36 http://ftp.uk.debian.org/debian/ unstable/main libxdmcp6 powerpc 1:1.1.0-1 [22.4 kB]
-Get:37 http://ftp.uk.debian.org/debian/ unstable/main libxcb1 powerpc 1.7-2 [41.0 kB]
-Get:38 http://ftp.uk.debian.org/debian/ unstable/main libx11-data all 2:1.4.3-1 [186 kB]
-Get:39 http://ftp.uk.debian.org/debian/ unstable/main libx11-6 powerpc 2:1.4.3-1 [874 kB]
-Get:40 http://ftp.uk.debian.org/debian/ unstable/main libxcb-render0 powerpc 1.7-2 [15.3 kB]
-Get:41 http://ftp.uk.debian.org/debian/ unstable/main libxcb-shm0 powerpc 1.7-2 [9286 B]
-Get:42 http://ftp.uk.debian.org/debian/ unstable/main libxrender1 powerpc 1:0.9.6-1 [31.5 kB]
-Get:43 http://ftp.uk.debian.org/debian/ unstable/main libcairo2 powerpc 1.10.2-6 [952 kB]
-Get:44 http://ftp.uk.debian.org/debian/ unstable/main libdatrie1 powerpc 0.2.4-2 [26.4 kB]
-Get:45 http://ftp.uk.debian.org/debian/ unstable/main x11-common all 1:7.6+6 [280 kB]
-Get:46 http://ftp.uk.debian.org/debian/ unstable/main libice6 powerpc 2:1.0.7-1 [54.2 kB]
-Get:47 http://ftp.uk.debian.org/debian/ unstable/main libjpeg62 powerpc 6b1-1 [93.6 kB]
-Get:48 http://ftp.uk.debian.org/debian/ unstable/main libjpeg62-dev powerpc 6b1-1 [199 kB]
-Get:49 http://ftp.uk.debian.org/debian/ unstable/main liblapack3gf powerpc 3.3.0-4 [3908 kB]
-Get:50 http://ftp.uk.debian.org/debian/ unstable/main liblapack-dev powerpc 3.3.0-4 [4189 kB]
-Get:51 http://ftp.uk.debian.org/debian/ unstable/main libncurses5-dev powerpc 5.9-1 [489 kB]
-Get:52 http://ftp.uk.debian.org/debian/ unstable/main libthai-data all 0.1.15-1 [201 kB]
-Get:53 http://ftp.uk.debian.org/debian/ unstable/main libthai0 powerpc 0.1.15-1 [41.3 kB]
-Get:54 http://ftp.uk.debian.org/debian/ unstable/main libxft2 powerpc 2.2.0-2 [58.1 kB]
-Get:55 http://ftp.uk.debian.org/debian/ unstable/main libpango1.0-0 powerpc 1.28.3-6 [432 kB]
-Get:56 http://ftp.uk.debian.org/debian/ unstable/main libpaper1 powerpc 1.1.24+nmu1 [21.5 kB]
-Get:57 http://ftp.uk.debian.org/debian/ unstable/main libpaper-utils powerpc 1.1.24+nmu1 [18.0 kB]
-Get:58 http://ftp.uk.debian.org/debian/ unstable/main libpcrecpp0 powerpc 8.12-3 [114 kB]
-Get:59 http://ftp.uk.debian.org/debian/ unstable/main libpcre3-dev powerpc 8.12-3 [315 kB]
-Get:60 http://ftp.uk.debian.org/debian/ unstable/main zlib1g-dev powerpc 1:1.2.3.4.dfsg-3 [190 kB]
-Get:61 http://ftp.uk.debian.org/debian/ unstable/main libpng12-dev powerpc 1.2.44-2 [271 kB]
-Get:62 http://ftp.uk.debian.org/debian/ unstable/main libreadline6-dev powerpc 6.2-2 [258 kB]
-Get:63 http://ftp.uk.debian.org/debian/ unstable/main libreadline-dev powerpc 6.2-2 [882 B]
-Get:64 http://ftp.uk.debian.org/debian/ unstable/main libsm6 powerpc 2:1.2.0-1 [29.1 kB]
-Get:65 http://ftp.uk.debian.org/debian/ unstable/main libtiff4 powerpc 3.9.5-1 [200 kB]
-Get:66 http://ftp.uk.debian.org/debian/ unstable/main libxext6 powerpc 2:1.3.0-1 [49.1 kB]
-Get:67 http://ftp.uk.debian.org/debian/ unstable/main libxss1 powerpc 1:1.2.1-1 [16.5 kB]
-Get:68 http://ftp.uk.debian.org/debian/ unstable/main libxt6 powerpc 1:1.1.1-1 [196 kB]
-Get:69 http://ftp.uk.debian.org/debian/ unstable/main zip powerpc 3.0-3 [343 kB]
-Get:70 http://ftp.uk.debian.org/debian/ unstable/main unzip powerpc 6.0-4 [192 kB]
-Get:71 http://ftp.uk.debian.org/debian/ unstable/main xdg-utils all 1.1.0~rc1-2 [70.2 kB]
-Get:72 http://ftp.uk.debian.org/debian/ unstable/main tcl8.5 powerpc 8.5.9-2 [1622 kB]
-Get:73 http://ftp.uk.debian.org/debian/ unstable/main tk8.5 powerpc 8.5.9-2 [1179 kB]
-Get:74 http://ftp.uk.debian.org/debian/ unstable/main r-base-core powerpc 2.13.0-2 [14.9 MB]
-Get:75 http://ftp.uk.debian.org/debian/ unstable/main r-base-dev all 2.13.0-2 [3490 B]
+Get:1 http://ftp.uk.debian.org/debian/ unstable/main libgomp1 powerpc 4.6.1-6 [26.3 kB]
+Get:2 http://ftp.uk.debian.org/debian/ unstable/main gcc-4.6-base powerpc 4.6.1-6 [134 kB]
+Get:3 http://ftp.uk.debian.org/debian/ unstable/main libgcc1 powerpc 1:4.6.1-6 [43.1 kB]
+Get:4 http://ftp.uk.debian.org/debian/ unstable/main cpp-4.6 powerpc 4.6.1-6 [4579 kB]
+Get:5 http://ftp.uk.debian.org/debian/ unstable/main libstdc++6-4.6-dev powerpc 4.6.1-6 [1691 kB]
+Get:6 http://ftp.uk.debian.org/debian/ unstable/main g++-4.6 powerpc 4.6.1-6 [6646 kB]
+Get:7 http://ftp.uk.debian.org/debian/ unstable/main gcc-4.6 powerpc 4.6.1-6 [4966 kB]
+Get:8 http://ftp.uk.debian.org/debian/ unstable/main libstdc++6 powerpc 4.6.1-6 [378 kB]
+Get:9 http://ftp.uk.debian.org/debian/ unstable/main libpipeline1 powerpc 1.2.0-3 [37.2 kB]
+Get:10 http://ftp.uk.debian.org/debian/ unstable/main libpcre3 powerpc 8.12-4 [222 kB]
+Get:11 http://ftp.uk.debian.org/debian/ unstable/main libdatrie1 powerpc 0.2.4-3 [26.5 kB]
+Get:12 http://ftp.uk.debian.org/debian/ unstable/main libexpat1 powerpc 2.0.1-7 [139 kB]
+Get:13 http://ftp.uk.debian.org/debian/ unstable/main libfreetype6 powerpc 2.4.6-1 [414 kB]
+Get:14 http://ftp.uk.debian.org/debian/ unstable/main ucf all 3.0025+nmu2 [70.6 kB]
+Get:15 http://ftp.uk.debian.org/debian/ unstable/main ttf-dejavu-core all 2.33-1 [1550 kB]
+Get:16 http://ftp.uk.debian.org/debian/ unstable/main fontconfig-config all 2.8.0-3 [221 kB]
+Get:17 http://ftp.uk.debian.org/debian/ unstable/main libfontconfig1 powerpc 2.8.0-3 [280 kB]
+Get:18 http://ftp.uk.debian.org/debian/ unstable/main libgfortran3 powerpc 4.6.1-6 [281 kB]
+Get:19 http://ftp.uk.debian.org/debian/ unstable/main x11-common all 1:7.6+7 [275 kB]
+Get:20 http://ftp.uk.debian.org/debian/ unstable/main libice6 powerpc 2:1.0.7-2 [53.0 kB]
+Get:21 http://ftp.uk.debian.org/debian/ unstable/main libpixman-1-0 powerpc 0.22.2-1 [342 kB]
+Get:22 http://ftp.uk.debian.org/debian/ unstable/main libpng12-0 powerpc 1.2.46-3 [184 kB]
+Get:23 http://ftp.uk.debian.org/debian/ unstable/main libxau6 powerpc 1:1.0.6-3 [16.8 kB]
+Get:24 http://ftp.uk.debian.org/debian/ unstable/main libxdmcp6 powerpc 1:1.1.0-3 [22.8 kB]
+Get:25 http://ftp.uk.debian.org/debian/ unstable/main libxcb1 powerpc 1.7-3 [41.1 kB]
+Get:26 http://ftp.uk.debian.org/debian/ unstable/main libx11-data all 2:1.4.4-1 [183 kB]
+Get:27 http://ftp.uk.debian.org/debian/ unstable/main libx11-6 powerpc 2:1.4.4-1 [868 kB]
+Get:28 http://ftp.uk.debian.org/debian/ unstable/main libxcb-render0 powerpc 1.7-3 [15.4 kB]
+Get:29 http://ftp.uk.debian.org/debian/ unstable/main libxcb-shm0 powerpc 1.7-3 [9456 B]
+Get:30 http://ftp.uk.debian.org/debian/ unstable/main libxrender1 powerpc 1:0.9.6-2 [30.7 kB]
+Get:31 http://ftp.uk.debian.org/debian/ unstable/main libcairo2 powerpc 1.10.2-6.1 [937 kB]
+Get:32 http://ftp.uk.debian.org/debian/ unstable/main libglib2.0-0 powerpc 2.28.6-1 [1611 kB]
+Get:33 http://ftp.uk.debian.org/debian/ unstable/main libthai-data all 0.1.15-2 [201 kB]
+Get:34 http://ftp.uk.debian.org/debian/ unstable/main libthai0 powerpc 0.1.15-2 [41.8 kB]
+Get:35 http://ftp.uk.debian.org/debian/ unstable/main libxft2 powerpc 2.2.0-3 [57.6 kB]
+Get:36 http://ftp.uk.debian.org/debian/ unstable/main fontconfig powerpc 2.8.0-3 [334 kB]
+Get:37 http://ftp.uk.debian.org/debian/ unstable/main libpango1.0-0 powerpc 1.28.4-2 [427 kB]
+Get:38 http://ftp.uk.debian.org/debian/ unstable/main libpcrecpp0 powerpc 8.12-4 [113 kB]
+Get:39 http://ftp.uk.debian.org/debian/ unstable/main libsm6 powerpc 2:1.2.0-2 [28.6 kB]
+Get:40 http://ftp.uk.debian.org/debian/ unstable/main libxext6 powerpc 2:1.3.0-3 [49.3 kB]
+Get:41 http://ftp.uk.debian.org/debian/ unstable/main libxss1 powerpc 1:1.2.1-2 [16.5 kB]
+Get:42 http://ftp.uk.debian.org/debian/ unstable/main libxt6 powerpc 1:1.1.1-2 [191 kB]
+Get:43 http://ftp.uk.debian.org/debian/ unstable/main bsdmainutils powerpc 8.2.3 [207 kB]
+Get:44 http://ftp.uk.debian.org/debian/ unstable/main groff-base powerpc 1.21-6 [1179 kB]
+Get:45 http://ftp.uk.debian.org/debian/ unstable/main man-db powerpc 2.6.0.2-2 [1013 kB]
+Get:46 http://ftp.uk.debian.org/debian/ unstable/main libmagic1 powerpc 5.04-5+b1 [240 kB]
+Get:47 http://ftp.uk.debian.org/debian/ unstable/main file powerpc 5.04-5+b1 [49.9 kB]
+Get:48 http://ftp.uk.debian.org/debian/ unstable/main gettext-base powerpc 0.18.1.1-4 [134 kB]
+Get:49 http://ftp.uk.debian.org/debian/ unstable/main libxml2 powerpc 2.7.8.dfsg-4 [837 kB]
+Get:50 http://ftp.uk.debian.org/debian/ unstable/main html2text powerpc 1.3.2a-15 [105 kB]
+Get:51 http://ftp.uk.debian.org/debian/ unstable/main libcroco3 powerpc 0.6.2-1 [128 kB]
+Get:52 http://ftp.uk.debian.org/debian/ unstable/main libunistring0 powerpc 0.9.3-4 [422 kB]
+Get:53 http://ftp.uk.debian.org/debian/ unstable/main gettext powerpc 0.18.1.1-4 [2032 kB]
+Get:54 http://ftp.uk.debian.org/debian/ unstable/main intltool-debian all 0.35.0+20060710.1 [30.8 kB]
+Get:55 http://ftp.uk.debian.org/debian/ unstable/main po-debconf all 1.0.16+nmu1 [223 kB]
+Get:56 http://ftp.uk.debian.org/debian/ unstable/main debhelper all 8.9.4 [561 kB]
+Get:57 http://ftp.uk.debian.org/debian/ unstable/main cdbs all 0.4.96 [75.8 kB]
+Get:58 http://ftp.uk.debian.org/debian/ unstable/main dpatch all 2.0.31 [92.3 kB]
+Get:59 http://ftp.uk.debian.org/debian/ unstable/main gfortran-4.6 powerpc 4.6.1-6 [5262 kB]
+Get:60 http://ftp.uk.debian.org/debian/ unstable/main gfortran powerpc 4:4.6.1-2 [1134 B]
+Get:61 http://ftp.uk.debian.org/debian/ unstable/main libblas3gf powerpc 1.2.20110419-2 [192 kB]
+Get:62 http://ftp.uk.debian.org/debian/ unstable/main libblas-dev powerpc 1.2.20110419-2 [206 kB]
+Get:63 http://ftp.uk.debian.org/debian/ unstable/main libbz2-dev powerpc 1.0.5-6 [38.5 kB]
+Get:64 http://ftp.uk.debian.org/debian/ unstable/main libjpeg62 powerpc 6b1-2 [90.6 kB]
+Get:65 http://ftp.uk.debian.org/debian/ unstable/main libjpeg8 powerpc 8c-2 [129 kB]
+Get:66 http://ftp.uk.debian.org/debian/ unstable/main libjpeg8-dev powerpc 8c-2 [234 kB]
+Get:67 http://ftp.uk.debian.org/debian/ unstable/main liblapack3gf powerpc 3.3.1-1 [3956 kB]
+Get:68 http://ftp.uk.debian.org/debian/ unstable/main liblapack-dev powerpc 3.3.1-1 [4261 kB]
+Get:69 http://ftp.uk.debian.org/debian/ unstable/main libncurses5-dev powerpc 5.9-1 [489 kB]
+Get:70 http://ftp.uk.debian.org/debian/ unstable/main libpaper1 powerpc 1.1.24+nmu1 [21.5 kB]
+Get:71 http://ftp.uk.debian.org/debian/ unstable/main libpaper-utils powerpc 1.1.24+nmu1 [18.0 kB]
+Get:72 http://ftp.uk.debian.org/debian/ unstable/main libpcre3-dev powerpc 8.12-4 [313 kB]
+Get:73 http://ftp.uk.debian.org/debian/ unstable/main zlib1g-dev powerpc 1:1.2.3.4.dfsg-3 [190 kB]
+Get:74 http://ftp.uk.debian.org/debian/ unstable/main libpng12-dev powerpc 1.2.46-3 [265 kB]
+Get:75 http://ftp.uk.debian.org/debian/ unstable/main libreadline6-dev powerpc 6.2-2 [258 kB]
+Get:76 http://ftp.uk.debian.org/debian/ unstable/main libreadline-dev powerpc 6.2-2 [882 B]
+Get:77 http://ftp.uk.debian.org/debian/ unstable/main libtiff4 powerpc 3.9.5-1 [200 kB]
+Get:78 http://ftp.uk.debian.org/debian/ unstable/main zip powerpc 3.0-4 [340 kB]
+Get:79 http://ftp.uk.debian.org/debian/ unstable/main unzip powerpc 6.0-5 [188 kB]
+Get:80 http://ftp.uk.debian.org/debian/ unstable/main xdg-utils all 1.1.0~rc1-2 [70.2 kB]
+Get:81 http://ftp.uk.debian.org/debian/ unstable/main tcl8.5 powerpc 8.5.10-1 [1627 kB]
+Get:82 http://ftp.uk.debian.org/debian/ unstable/main tk8.5 powerpc 8.5.10-1 [1166 kB]
+Get:83 http://ftp.uk.debian.org/debian/ unstable/main r-base-core powerpc 2.13.1-1 [15.0 MB]
+Get:84 http://ftp.uk.debian.org/debian/ unstable/main r-base-dev all 2.13.1-1 [3490 B]
debconf: delaying package configuration, since apt-utils is not installed
-Fetched 50.9 MB in 14s (3481 kB/s)
+Fetched 69.6 MB in 23s (2953 kB/s)
+(Reading database ... 10626 files and directories currently installed.)
+Preparing to replace libgomp1 4.6.1-4 (using .../libgomp1_4.6.1-6_powerpc.deb) ...
+Unpacking replacement libgomp1 ...
+Preparing to replace gcc-4.6-base 4.6.1-4 (using .../gcc-4.6-base_4.6.1-6_powerpc.deb) ...
+Unpacking replacement gcc-4.6-base ...
+Setting up gcc-4.6-base (4.6.1-6) ...
+(Reading database ... 10626 files and directories currently installed.)
+Preparing to replace libgcc1 1:4.6.1-4 (using .../libgcc1_1%3a4.6.1-6_powerpc.deb) ...
+Unpacking replacement libgcc1 ...
+Setting up libgcc1 (1:4.6.1-6) ...
+(Reading database ... 10626 files and directories currently installed.)
+Preparing to replace cpp-4.6 4.6.1-4 (using .../cpp-4.6_4.6.1-6_powerpc.deb) ...
+Unpacking replacement cpp-4.6 ...
+Preparing to replace libstdc++6-4.6-dev 4.6.1-4 (using .../libstdc++6-4.6-dev_4.6.1-6_powerpc.deb) ...
+Unpacking replacement libstdc++6-4.6-dev ...
+Preparing to replace g++-4.6 4.6.1-4 (using .../g++-4.6_4.6.1-6_powerpc.deb) ...
+Unpacking replacement g++-4.6 ...
+Preparing to replace gcc-4.6 4.6.1-4 (using .../gcc-4.6_4.6.1-6_powerpc.deb) ...
+Unpacking replacement gcc-4.6 ...
+Preparing to replace libstdc++6 4.6.1-4 (using .../libstdc++6_4.6.1-6_powerpc.deb) ...
+Unpacking replacement libstdc++6 ...
+Setting up libstdc++6 (4.6.1-6) ...
+Selecting previously deselected package libpipeline1.
+(Reading database ... 10628 files and directories currently installed.)
+Unpacking libpipeline1 (from .../libpipeline1_1.2.0-3_powerpc.deb) ...
+Selecting previously deselected package libpcre3.
+Unpacking libpcre3 (from .../libpcre3_8.12-4_powerpc.deb) ...
+Selecting previously deselected package libdatrie1.
+Unpacking libdatrie1 (from .../libdatrie1_0.2.4-3_powerpc.deb) ...
+Selecting previously deselected package libexpat1.
+Unpacking libexpat1 (from .../libexpat1_2.0.1-7_powerpc.deb) ...
+Selecting previously deselected package libfreetype6.
+Unpacking libfreetype6 (from .../libfreetype6_2.4.6-1_powerpc.deb) ...
+Selecting previously deselected package ucf.
+Unpacking ucf (from .../ucf_3.0025+nmu2_all.deb) ...
+Moving old data out of the way
+Selecting previously deselected package ttf-dejavu-core.
+Unpacking ttf-dejavu-core (from .../ttf-dejavu-core_2.33-1_all.deb) ...
+Selecting previously deselected package fontconfig-config.
+Unpacking fontconfig-config (from .../fontconfig-config_2.8.0-3_all.deb) ...
+Selecting previously deselected package libfontconfig1.
+Unpacking libfontconfig1 (from .../libfontconfig1_2.8.0-3_powerpc.deb) ...
+Selecting previously deselected package libgfortran3.
+Unpacking libgfortran3 (from .../libgfortran3_4.6.1-6_powerpc.deb) ...
+Selecting previously deselected package x11-common.
+Unpacking x11-common (from .../x11-common_1%3a7.6+7_all.deb) ...
+Selecting previously deselected package libice6.
+Unpacking libice6 (from .../libice6_2%3a1.0.7-2_powerpc.deb) ...
+Selecting previously deselected package libpixman-1-0.
+Unpacking libpixman-1-0 (from .../libpixman-1-0_0.22.2-1_powerpc.deb) ...
+Selecting previously deselected package libpng12-0.
+Unpacking libpng12-0 (from .../libpng12-0_1.2.46-3_powerpc.deb) ...
+Selecting previously deselected package libxau6.
+Unpacking libxau6 (from .../libxau6_1%3a1.0.6-3_powerpc.deb) ...
+Selecting previously deselected package libxdmcp6.
+Unpacking libxdmcp6 (from .../libxdmcp6_1%3a1.1.0-3_powerpc.deb) ...
+Selecting previously deselected package libxcb1.
+Unpacking libxcb1 (from .../libxcb1_1.7-3_powerpc.deb) ...
+Selecting previously deselected package libx11-data.
+Unpacking libx11-data (from .../libx11-data_2%3a1.4.4-1_all.deb) ...
+Selecting previously deselected package libx11-6.
+Unpacking libx11-6 (from .../libx11-6_2%3a1.4.4-1_powerpc.deb) ...
+Selecting previously deselected package libxcb-render0.
+Unpacking libxcb-render0 (from .../libxcb-render0_1.7-3_powerpc.deb) ...
+Selecting previously deselected package libxcb-shm0.
+Unpacking libxcb-shm0 (from .../libxcb-shm0_1.7-3_powerpc.deb) ...
+Selecting previously deselected package libxrender1.
+Unpacking libxrender1 (from .../libxrender1_1%3a0.9.6-2_powerpc.deb) ...
+Selecting previously deselected package libcairo2.
+Unpacking libcairo2 (from .../libcairo2_1.10.2-6.1_powerpc.deb) ...
+Selecting previously deselected package libglib2.0-0.
+Unpacking libglib2.0-0 (from .../libglib2.0-0_2.28.6-1_powerpc.deb) ...
+Selecting previously deselected package libthai-data.
+Unpacking libthai-data (from .../libthai-data_0.1.15-2_all.deb) ...
+Selecting previously deselected package libthai0.
+Unpacking libthai0 (from .../libthai0_0.1.15-2_powerpc.deb) ...
+Selecting previously deselected package libxft2.
+Unpacking libxft2 (from .../libxft2_2.2.0-3_powerpc.deb) ...
+Selecting previously deselected package fontconfig.
+Unpacking fontconfig (from .../fontconfig_2.8.0-3_powerpc.deb) ...
+Selecting previously deselected package libpango1.0-0.
+Unpacking libpango1.0-0 (from .../libpango1.0-0_1.28.4-2_powerpc.deb) ...
+Selecting previously deselected package libpcrecpp0.
+Unpacking libpcrecpp0 (from .../libpcrecpp0_8.12-4_powerpc.deb) ...
+Selecting previously deselected package libsm6.
+Unpacking libsm6 (from .../libsm6_2%3a1.2.0-2_powerpc.deb) ...
+Selecting previously deselected package libxext6.
+Unpacking libxext6 (from .../libxext6_2%3a1.3.0-3_powerpc.deb) ...
+Selecting previously deselected package libxss1.
+Unpacking libxss1 (from .../libxss1_1%3a1.2.1-2_powerpc.deb) ...
+Selecting previously deselected package libxt6.
+Unpacking libxt6 (from .../libxt6_1%3a1.1.1-2_powerpc.deb) ...
Selecting previously deselected package bsdmainutils.
-(Reading database ... 11071 files and directories currently installed.)
-Unpacking bsdmainutils (from .../bsdmainutils_8.2.2_powerpc.deb) ...
+Unpacking bsdmainutils (from .../bsdmainutils_8.2.3_powerpc.deb) ...
Selecting previously deselected package groff-base.
-Unpacking groff-base (from .../groff-base_1.21-5_powerpc.deb) ...
-Selecting previously deselected package libpipeline1.
-Unpacking libpipeline1 (from .../libpipeline1_1.2.0-2_powerpc.deb) ...
+Unpacking groff-base (from .../groff-base_1.21-6_powerpc.deb) ...
Selecting previously deselected package man-db.
-Unpacking man-db (from .../man-db_2.6.0.2-1_powerpc.deb) ...
+Unpacking man-db (from .../man-db_2.6.0.2-2_powerpc.deb) ...
Selecting previously deselected package libmagic1.
Unpacking libmagic1 (from .../libmagic1_5.04-5+b1_powerpc.deb) ...
Selecting previously deselected package file.
Unpacking file (from .../file_5.04-5+b1_powerpc.deb) ...
Selecting previously deselected package gettext-base.
-Unpacking gettext-base (from .../gettext-base_0.18.1.1-3_powerpc.deb) ...
-Selecting previously deselected package libpcre3.
-Unpacking libpcre3 (from .../libpcre3_8.12-3_powerpc.deb) ...
+Unpacking gettext-base (from .../gettext-base_0.18.1.1-4_powerpc.deb) ...
Selecting previously deselected package libxml2.
-Unpacking libxml2 (from .../libxml2_2.7.8.dfsg-2+b1_powerpc.deb) ...
-Selecting previously deselected package ucf.
-Unpacking ucf (from .../ucf_3.0025+nmu2_all.deb) ...
-Moving old data out of the way
+Unpacking libxml2 (from .../libxml2_2.7.8.dfsg-4_powerpc.deb) ...
Selecting previously deselected package html2text.
Unpacking html2text (from .../html2text_1.3.2a-15_powerpc.deb) ...
-Selecting previously deselected package libglib2.0-0.
-Unpacking libglib2.0-0 (from .../libglib2.0-0_2.28.6-1_powerpc.deb) ...
Selecting previously deselected package libcroco3.
Unpacking libcroco3 (from .../libcroco3_0.6.2-1_powerpc.deb) ...
Selecting previously deselected package libunistring0.
Unpacking libunistring0 (from .../libunistring0_0.9.3-4_powerpc.deb) ...
Selecting previously deselected package gettext.
-Unpacking gettext (from .../gettext_0.18.1.1-3_powerpc.deb) ...
+Unpacking gettext (from .../gettext_0.18.1.1-4_powerpc.deb) ...
Selecting previously deselected package intltool-debian.
Unpacking intltool-debian (from .../intltool-debian_0.35.0+20060710.1_all.deb) ...
Selecting previously deselected package po-debconf.
Unpacking po-debconf (from .../po-debconf_1.0.16+nmu1_all.deb) ...
Selecting previously deselected package debhelper.
-Unpacking debhelper (from .../debhelper_8.1.6_all.deb) ...
+Unpacking debhelper (from .../debhelper_8.9.4_all.deb) ...
Selecting previously deselected package cdbs.
-Unpacking cdbs (from .../archives/cdbs_0.4.94_all.deb) ...
+Unpacking cdbs (from .../archives/cdbs_0.4.96_all.deb) ...
Selecting previously deselected package dpatch.
Unpacking dpatch (from .../archives/dpatch_2.0.31_all.deb) ...
-Selecting previously deselected package libexpat1.
-Unpacking libexpat1 (from .../libexpat1_2.0.1-7_powerpc.deb) ...
-Selecting previously deselected package libfreetype6.
-Unpacking libfreetype6 (from .../libfreetype6_2.4.4-1_powerpc.deb) ...
-Selecting previously deselected package ttf-dejavu-core.
-Unpacking ttf-dejavu-core (from .../ttf-dejavu-core_2.33-1_all.deb) ...
-Selecting previously deselected package fontconfig-config.
-Unpacking fontconfig-config (from .../fontconfig-config_2.8.0-2.2_all.deb) ...
-Selecting previously deselected package libfontconfig1.
-Unpacking libfontconfig1 (from .../libfontconfig1_2.8.0-2.2_powerpc.deb) ...
-Selecting previously deselected package fontconfig.
-Unpacking fontconfig (from .../fontconfig_2.8.0-2.2_powerpc.deb) ...
-Selecting previously deselected package libgfortran3.
-Unpacking libgfortran3 (from .../libgfortran3_4.6.0-10_powerpc.deb) ...
Selecting previously deselected package gfortran-4.6.
-Unpacking gfortran-4.6 (from .../gfortran-4.6_4.6.0-10_powerpc.deb) ...
+Unpacking gfortran-4.6 (from .../gfortran-4.6_4.6.1-6_powerpc.deb) ...
Selecting previously deselected package gfortran.
-Unpacking gfortran (from .../gfortran_4%3a4.6.0-5_powerpc.deb) ...
+Unpacking gfortran (from .../gfortran_4%3a4.6.1-2_powerpc.deb) ...
Selecting previously deselected package libblas3gf.
-Unpacking libblas3gf (from .../libblas3gf_1.2-8_powerpc.deb) ...
+Unpacking libblas3gf (from .../libblas3gf_1.2.20110419-2_powerpc.deb) ...
Selecting previously deselected package libblas-dev.
-Unpacking libblas-dev (from .../libblas-dev_1.2-8_powerpc.deb) ...
+Unpacking libblas-dev (from .../libblas-dev_1.2.20110419-2_powerpc.deb) ...
Selecting previously deselected package libbz2-dev.
Unpacking libbz2-dev (from .../libbz2-dev_1.0.5-6_powerpc.deb) ...
-Selecting previously deselected package libpixman-1-0.
-Unpacking libpixman-1-0 (from .../libpixman-1-0_0.21.8-1_powerpc.deb) ...
-Selecting previously deselected package libpng12-0.
-Unpacking libpng12-0 (from .../libpng12-0_1.2.44-2_powerpc.deb) ...
-Selecting previously deselected package libxau6.
-Unpacking libxau6 (from .../libxau6_1%3a1.0.6-1_powerpc.deb) ...
-Selecting previously deselected package libxdmcp6.
-Unpacking libxdmcp6 (from .../libxdmcp6_1%3a1.1.0-1_powerpc.deb) ...
-Selecting previously deselected package libxcb1.
-Unpacking libxcb1 (from .../libxcb1_1.7-2_powerpc.deb) ...
-Selecting previously deselected package libx11-data.
-Unpacking libx11-data (from .../libx11-data_2%3a1.4.3-1_all.deb) ...
-Selecting previously deselected package libx11-6.
-Unpacking libx11-6 (from .../libx11-6_2%3a1.4.3-1_powerpc.deb) ...
-Selecting previously deselected package libxcb-render0.
-Unpacking libxcb-render0 (from .../libxcb-render0_1.7-2_powerpc.deb) ...
-Selecting previously deselected package libxcb-shm0.
-Unpacking libxcb-shm0 (from .../libxcb-shm0_1.7-2_powerpc.deb) ...
-Selecting previously deselected package libxrender1.
-Unpacking libxrender1 (from .../libxrender1_1%3a0.9.6-1_powerpc.deb) ...
-Selecting previously deselected package libcairo2.
-Unpacking libcairo2 (from .../libcairo2_1.10.2-6_powerpc.deb) ...
-Selecting previously deselected package libdatrie1.
-Unpacking libdatrie1 (from .../libdatrie1_0.2.4-2_powerpc.deb) ...
-Selecting previously deselected package x11-common.
-Unpacking x11-common (from .../x11-common_1%3a7.6+6_all.deb) ...
-Selecting previously deselected package libice6.
-Unpacking libice6 (from .../libice6_2%3a1.0.7-1_powerpc.deb) ...
Selecting previously deselected package libjpeg62.
-Unpacking libjpeg62 (from .../libjpeg62_6b1-1_powerpc.deb) ...
-Selecting previously deselected package libjpeg62-dev.
-Unpacking libjpeg62-dev (from .../libjpeg62-dev_6b1-1_powerpc.deb) ...
+Unpacking libjpeg62 (from .../libjpeg62_6b1-2_powerpc.deb) ...
+Selecting previously deselected package libjpeg8.
+Unpacking libjpeg8 (from .../libjpeg8_8c-2_powerpc.deb) ...
+Selecting previously deselected package libjpeg8-dev.
+Unpacking libjpeg8-dev (from .../libjpeg8-dev_8c-2_powerpc.deb) ...
Selecting previously deselected package liblapack3gf.
-Unpacking liblapack3gf (from .../liblapack3gf_3.3.0-4_powerpc.deb) ...
+Unpacking liblapack3gf (from .../liblapack3gf_3.3.1-1_powerpc.deb) ...
Selecting previously deselected package liblapack-dev.
-Unpacking liblapack-dev (from .../liblapack-dev_3.3.0-4_powerpc.deb) ...
+Unpacking liblapack-dev (from .../liblapack-dev_3.3.1-1_powerpc.deb) ...
Selecting previously deselected package libncurses5-dev.
Unpacking libncurses5-dev (from .../libncurses5-dev_5.9-1_powerpc.deb) ...
-Selecting previously deselected package libthai-data.
-Unpacking libthai-data (from .../libthai-data_0.1.15-1_all.deb) ...
-Selecting previously deselected package libthai0.
-Unpacking libthai0 (from .../libthai0_0.1.15-1_powerpc.deb) ...
-Selecting previously deselected package libxft2.
-Unpacking libxft2 (from .../libxft2_2.2.0-2_powerpc.deb) ...
-Selecting previously deselected package libpango1.0-0.
-Unpacking libpango1.0-0 (from .../libpango1.0-0_1.28.3-6_powerpc.deb) ...
Selecting previously deselected package libpaper1.
Unpacking libpaper1 (from .../libpaper1_1.1.24+nmu1_powerpc.deb) ...
Selecting previously deselected package libpaper-utils.
Unpacking libpaper-utils (from .../libpaper-utils_1.1.24+nmu1_powerpc.deb) ...
-Selecting previously deselected package libpcrecpp0.
-Unpacking libpcrecpp0 (from .../libpcrecpp0_8.12-3_powerpc.deb) ...
Selecting previously deselected package libpcre3-dev.
-Unpacking libpcre3-dev (from .../libpcre3-dev_8.12-3_powerpc.deb) ...
+Unpacking libpcre3-dev (from .../libpcre3-dev_8.12-4_powerpc.deb) ...
Selecting previously deselected package zlib1g-dev.
Unpacking zlib1g-dev (from .../zlib1g-dev_1%3a1.2.3.4.dfsg-3_powerpc.deb) ...
Selecting previously deselected package libpng12-dev.
-Unpacking libpng12-dev (from .../libpng12-dev_1.2.44-2_powerpc.deb) ...
+Unpacking libpng12-dev (from .../libpng12-dev_1.2.46-3_powerpc.deb) ...
Selecting previously deselected package libreadline6-dev.
Unpacking libreadline6-dev (from .../libreadline6-dev_6.2-2_powerpc.deb) ...
Selecting previously deselected package libreadline-dev.
Unpacking libreadline-dev (from .../libreadline-dev_6.2-2_powerpc.deb) ...
-Selecting previously deselected package libsm6.
-Unpacking libsm6 (from .../libsm6_2%3a1.2.0-1_powerpc.deb) ...
Selecting previously deselected package libtiff4.
Unpacking libtiff4 (from .../libtiff4_3.9.5-1_powerpc.deb) ...
-Selecting previously deselected package libxext6.
-Unpacking libxext6 (from .../libxext6_2%3a1.3.0-1_powerpc.deb) ...
-Selecting previously deselected package libxss1.
-Unpacking libxss1 (from .../libxss1_1%3a1.2.1-1_powerpc.deb) ...
-Selecting previously deselected package libxt6.
-Unpacking libxt6 (from .../libxt6_1%3a1.1.1-1_powerpc.deb) ...
Selecting previously deselected package zip.
-Unpacking zip (from .../archives/zip_3.0-3_powerpc.deb) ...
+Unpacking zip (from .../archives/zip_3.0-4_powerpc.deb) ...
Selecting previously deselected package unzip.
-Unpacking unzip (from .../unzip_6.0-4_powerpc.deb) ...
+Unpacking unzip (from .../unzip_6.0-5_powerpc.deb) ...
Selecting previously deselected package xdg-utils.
Unpacking xdg-utils (from .../xdg-utils_1.1.0~rc1-2_all.deb) ...
Selecting previously deselected package tcl8.5.
-Unpacking tcl8.5 (from .../tcl8.5_8.5.9-2_powerpc.deb) ...
+Unpacking tcl8.5 (from .../tcl8.5_8.5.10-1_powerpc.deb) ...
Selecting previously deselected package tk8.5.
-Unpacking tk8.5 (from .../tk8.5_8.5.9-2_powerpc.deb) ...
+Unpacking tk8.5 (from .../tk8.5_8.5.10-1_powerpc.deb) ...
Selecting previously deselected package r-base-core.
-Unpacking r-base-core (from .../r-base-core_2.13.0-2_powerpc.deb) ...
+Unpacking r-base-core (from .../r-base-core_2.13.1-1_powerpc.deb) ...
Selecting previously deselected package r-base-dev.
-Unpacking r-base-dev (from .../r-base-dev_2.13.0-2_all.deb) ...
-Setting up bsdmainutils (8.2.2) ...
+Unpacking r-base-dev (from .../r-base-dev_2.13.1-1_all.deb) ...
+Setting up libgomp1 (4.6.1-6) ...
+Setting up cpp-4.6 (4.6.1-6) ...
+Setting up gcc-4.6 (4.6.1-6) ...
+Setting up libpipeline1 (1.2.0-3) ...
+Setting up libpcre3 (8.12-4) ...
+Setting up libdatrie1 (0.2.4-3) ...
+Setting up libexpat1 (2.0.1-7) ...
+Setting up libfreetype6 (2.4.6-1) ...
+Setting up ucf (3.0025+nmu2) ...
+Setting up ttf-dejavu-core (2.33-1) ...
+Setting up fontconfig-config (2.8.0-3) ...
+Setting up libfontconfig1 (2.8.0-3) ...
+Setting up libgfortran3 (4.6.1-6) ...
+Setting up x11-common (1:7.6+7) ...
+All runlevel operations denied by policy
+invoke-rc.d: policy-rc.d denied execution of start.
+Setting up libice6 (2:1.0.7-2) ...
+Setting up libpixman-1-0 (0.22.2-1) ...
+Setting up libpng12-0 (1.2.46-3) ...
+Setting up libxau6 (1:1.0.6-3) ...
+Setting up libxdmcp6 (1:1.1.0-3) ...
+Setting up libxcb1 (1.7-3) ...
+Setting up libx11-data (2:1.4.4-1) ...
+Setting up libx11-6 (2:1.4.4-1) ...
+Setting up libxcb-render0 (1.7-3) ...
+Setting up libxcb-shm0 (1.7-3) ...
+Setting up libxrender1 (1:0.9.6-2) ...
+Setting up libcairo2 (1.10.2-6.1) ...
+Setting up libglib2.0-0 (2.28.6-1) ...
+No schema files found: doing nothing.
+Setting up libthai-data (0.1.15-2) ...
+Setting up libthai0 (0.1.15-2) ...
+Setting up libxft2 (2.2.0-3) ...
+Setting up fontconfig (2.8.0-3) ...
+Cleaning up old fontconfig caches... done.
+Regenerating fonts cache... done.
+Setting up libpango1.0-0 (1.28.4-2) ...
+Setting up libpcrecpp0 (8.12-4) ...
+Setting up libsm6 (2:1.2.0-2) ...
+Setting up libxext6 (2:1.3.0-3) ...
+Setting up libxss1 (1:1.2.1-2) ...
+Setting up libxt6 (1:1.1.1-2) ...
+Setting up bsdmainutils (8.2.3) ...
update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode.
update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode.
-Setting up groff-base (1.21-5) ...
-Setting up libpipeline1 (1.2.0-2) ...
-Setting up man-db (2.6.0.2-1) ...
+Setting up groff-base (1.21-6) ...
+Setting up man-db (2.6.0.2-2) ...
Building database of manual pages ...
Setting up libmagic1 (5.04-5+b1) ...
Setting up file (5.04-5+b1) ...
-Setting up gettext-base (0.18.1.1-3) ...
-Setting up libpcre3 (8.12-3) ...
-Setting up libxml2 (2.7.8.dfsg-2+b1) ...
-Setting up ucf (3.0025+nmu2) ...
+Setting up gettext-base (0.18.1.1-4) ...
+Setting up libxml2 (2.7.8.dfsg-4) ...
Setting up html2text (1.3.2a-15) ...
-Setting up libglib2.0-0 (2.28.6-1) ...
-No schema files found: doing nothing.
Setting up libcroco3 (0.6.2-1) ...
Setting up libunistring0 (0.9.3-4) ...
-Setting up gettext (0.18.1.1-3) ...
+Setting up gettext (0.18.1.1-4) ...
Setting up intltool-debian (0.35.0+20060710.1) ...
Setting up po-debconf (1.0.16+nmu1) ...
-Setting up debhelper (8.1.6) ...
-Setting up cdbs (0.4.94) ...
+Setting up debhelper (8.9.4) ...
+Setting up cdbs (0.4.96) ...
Setting up dpatch (2.0.31) ...
-Setting up libexpat1 (2.0.1-7) ...
-Setting up libfreetype6 (2.4.4-1) ...
-Setting up ttf-dejavu-core (2.33-1) ...
-Setting up fontconfig-config (2.8.0-2.2) ...
-Setting up libfontconfig1 (2.8.0-2.2) ...
-Setting up fontconfig (2.8.0-2.2) ...
-Cleaning up old fontconfig caches... done.
-Regenerating fonts cache... done.
-Setting up libgfortran3 (4.6.0-10) ...
-Setting up gfortran-4.6 (4.6.0-10) ...
-Setting up gfortran (4:4.6.0-5) ...
+Setting up gfortran-4.6 (4.6.1-6) ...
+Setting up gfortran (4:4.6.1-2) ...
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode.
-Setting up libblas3gf (1.2-8) ...
+Setting up libblas3gf (1.2.20110419-2) ...
update-alternatives: using /usr/lib/libblas/libblas.so.3gf to provide /usr/lib/libblas.so.3gf (libblas.so.3gf) in auto mode.
-Setting up libblas-dev (1.2-8) ...
+Setting up libblas-dev (1.2.20110419-2) ...
update-alternatives: using /usr/lib/libblas/libblas.so to provide /usr/lib/libblas.so (libblas.so) in auto mode.
Setting up libbz2-dev (1.0.5-6) ...
-Setting up libpixman-1-0 (0.21.8-1) ...
-Setting up libpng12-0 (1.2.44-2) ...
-Setting up libxau6 (1:1.0.6-1) ...
-Setting up libxdmcp6 (1:1.1.0-1) ...
-Setting up libxcb1 (1.7-2) ...
-Setting up libx11-data (2:1.4.3-1) ...
-Setting up libx11-6 (2:1.4.3-1) ...
-Setting up libxcb-render0 (1.7-2) ...
-Setting up libxcb-shm0 (1.7-2) ...
-Setting up libxrender1 (1:0.9.6-1) ...
-Setting up libcairo2 (1.10.2-6) ...
-Setting up libdatrie1 (0.2.4-2) ...
-Setting up x11-common (1:7.6+6) ...
-All runlevel operations denied by policy
-invoke-rc.d: policy-rc.d denied execution of start.
-Setting up libice6 (2:1.0.7-1) ...
-Setting up libjpeg62 (6b1-1) ...
-Setting up libjpeg62-dev (6b1-1) ...
-Setting up liblapack3gf (3.3.0-4) ...
+Setting up libjpeg62 (6b1-2) ...
+Setting up libjpeg8 (8c-2) ...
+Setting up libjpeg8-dev (8c-2) ...
+Setting up liblapack3gf (3.3.1-1) ...
update-alternatives: using /usr/lib/lapack/liblapack.so.3gf to provide /usr/lib/liblapack.so.3gf (liblapack.so.3gf) in auto mode.
-Setting up liblapack-dev (3.3.0-4) ...
+Setting up liblapack-dev (3.3.1-1) ...
update-alternatives: using /usr/lib/lapack/liblapack.so to provide /usr/lib/liblapack.so (liblapack.so) in auto mode.
Setting up libncurses5-dev (5.9-1) ...
-Setting up libthai-data (0.1.15-1) ...
-Setting up libthai0 (0.1.15-1) ...
-Setting up libxft2 (2.2.0-2) ...
-Setting up libpango1.0-0 (1.28.3-6) ...
Setting up libpaper1 (1.1.24+nmu1) ...
Creating config file /etc/papersize with new version
Setting up libpaper-utils (1.1.24+nmu1) ...
-Setting up libpcrecpp0 (8.12-3) ...
-Setting up libpcre3-dev (8.12-3) ...
+Setting up libpcre3-dev (8.12-4) ...
Setting up zlib1g-dev (1:1.2.3.4.dfsg-3) ...
-Setting up libpng12-dev (1.2.44-2) ...
+Setting up libpng12-dev (1.2.46-3) ...
Setting up libreadline6-dev (6.2-2) ...
Setting up libreadline-dev (6.2-2) ...
-Setting up libsm6 (2:1.2.0-1) ...
Setting up libtiff4 (3.9.5-1) ...
-Setting up libxext6 (2:1.3.0-1) ...
-Setting up libxss1 (1:1.2.1-1) ...
-Setting up libxt6 (1:1.1.1-1) ...
-Setting up zip (3.0-3) ...
-Setting up unzip (6.0-4) ...
+Setting up zip (3.0-4) ...
+Setting up unzip (6.0-5) ...
Setting up xdg-utils (1.1.0~rc1-2) ...
-Setting up tcl8.5 (8.5.9-2) ...
+Setting up tcl8.5 (8.5.10-1) ...
update-alternatives: using /usr/bin/tclsh8.5 to provide /usr/bin/tclsh (tclsh) in auto mode.
-Setting up tk8.5 (8.5.9-2) ...
+Setting up tk8.5 (8.5.10-1) ...
update-alternatives: using /usr/bin/wish8.5 to provide /usr/bin/wish (wish) in auto mode.
-Setting up r-base-core (2.13.0-2) ...
+Setting up r-base-core (2.13.1-1) ...
Setting R_PAPERSIZE_USER default to 'a4'
Creating config file /etc/R/Renviron with new version
-Setting up r-base-dev (2.13.0-2) ...
+Setting up r-base-dev (2.13.1-1) ...
+Setting up libstdc++6-4.6-dev (4.6.1-6) ...
+Setting up g++-4.6 (4.6.1-6) ...
Removing negative dependencies:
Reading package lists...
Building dependency tree...
Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded.
+0 upgraded, 0 newly installed, 0 to remove and 19 not upgraded.
Checking correctness of dependencies...
Kernel: Linux 2.6.32-5-powerpc64 powerpc (ppc64)
-Toolchain package versions: binutils_2.21.51.20110523-1 dpkg-dev_1.16.0.3 g++-4.6_4.6.0-10 gcc-4.6_4.6.0-10 libc6-dev_2.13-4 libstdc++6_4.6.0-10 libstdc++6-4.6-dev_4.6.0-10 linux-libc-dev_2.6.39-1
-Package versions: apt_0.8.14.1 base-files_6.4 base-passwd_3.5.22 bash_4.1-3 binutils_2.21.51.20110523-1 bsdmainutils_8.2.2 bsdutils_1:2.17.2-9.1 build-essential_11.5 bzip2_1.0.5-6 cdbs_0.4.94 coreutils_8.5-1 cpp_4:4.6.0-5 cpp-4.6_4.6.0-10 dash_0.5.5.1-7.4 debconf_1.5.39 debconf-i18n_1.5.39 debfoster_2.7-1.1 debhelper_8.1.6 debian-archive-keyring_2010.08.28 debianutils_4.0.1 diffutils_1:3.0-1 dpatch_2.0.31 dpkg_1.16.0.3 dpkg-dev_1.16.0.3 e2fslibs_1.41.12-4 e2fsprogs_1.41.12-4 fakeroot_1.15.1-1 file_5.04-5+b1 findutils_4.4.2-1+b1 fontconfig_2.8.0-2.2 fontconfig-config_2.8.0-2.2 g++_4:4.6.0-5 g++-4.6_4.6.0-10 gcc_4:4.6.0-5 gcc-4.4-base_4.4.6-3 gcc-4.5-base_4.5.3-1 gcc-4.6_4.6.0-10 gcc-4.6-base_4.6.0-10 gettext_0.18.1.1-3 gettext-base_0.18.1.1-3 gfortran_4:4.6.0-5 gfortran-4.6_4.6.0-10 gnupg_1.4.11-3 gpgv_1.4.11-3 grep_2.6.3-3 groff-base_1.21-5 gzip_1.3.12-9 hostname_3.06 html2text_1.3.2a-15 initscripts_2.88dsf-13.7 insserv_1.14.0-2.1 intltool-debian_0.35.0+20060710.1 libacl1_2.2.49-5 libattr1_1:2.4.44-3 libblas-dev_1.2-8 libblas3gf_1.2-8 libblkid1_2.17.2-9.1 libbz2-1.0_1.0.5-6 libbz2-dev_1.0.5-6 libc-bin_2.13-4 libc-dev-bin_2.13-4 libc6_2.13-4 libc6-dev_2.13-4 libc6-ppc64_2.13-4 libcairo2_1.10.2-6 libcloog-ppl0_0.15.9-3 libcomerr2_1.41.12-4 libcroco3_0.6.2-1 libdatrie1_0.2.4-2 libdb5.1_5.1.25-10 libdpkg-perl_1.16.0.3 libexpat1_2.0.1-7 libfontconfig1_2.8.0-2.2 libfreetype6_2.4.4-1 libgc1c2_1:7.1-8 libgcc1_1:4.6.0-10 libgdbm3_1.8.3-9 libgfortran3_4.6.0-10 libglib2.0-0_2.28.6-1 libgmp10_2:5.0.1+dfsg-7 libgmpxx4ldbl_2:5.0.1+dfsg-7 libgomp1_4.6.0-10 libice6_2:1.0.7-1 libjpeg62_6b1-1 libjpeg62-dev_6b1-1 liblapack-dev_3.3.0-4 liblapack3gf_3.3.0-4 liblocale-gettext-perl_1.05-6+b2 liblzma2_5.0.0-2 libmagic1_5.04-5+b1 libmpc2_0.9-3 libmpfr4_3.0.1-3 libncurses5_5.9-1 libncurses5-dev_5.9-1 libpam-modules_1.1.2-3 libpam-runtime_1.1.2-3 libpam0g_1.1.2-3 libpango1.0-0_1.28.3-6 libpaper-utils_1.1.24+nmu1 libpaper1_1.1.24+nmu1 libpcre3_8.12-3 libpcre3-dev_8.12-3 libpcrecpp0_8.12-3 libpipeline1_1.2.0-2 libpixman-1-0_0.21.8-1 libpng12-0_1.2.44-2 libpng12-dev_1.2.44-2 libppl-c4_0.11.2-3 libppl9_0.11.2-3 libpwl5_0.11.2-3 libreadline-dev_6.2-2 libreadline6_6.2-2 libreadline6-dev_6.2-2 libselinux1_2.0.98-1+b1 libsepol1_2.0.42-1 libslang2_2.2.4-2 libsm6_2:1.2.0-1 libss2_1.41.12-4 libstdc++6_4.6.0-10 libstdc++6-4.6-dev_4.6.0-10 libtext-charwidth-perl_0.04-6+b3 libtext-iconv-perl_1.7-2+b2 libtext-wrapi18n-perl_0.06-7 libthai-data_0.1.15-1 libthai0_0.1.15-1 libtiff4_3.9.5-1 libtimedate-perl_1.2000-1 libunistring0_0.9.3-4 libusb-0.1-4_2:0.1.12-17 libuuid1_2.17.2-9.1 libx11-6_2:1.4.3-1 libx11-data_2:1.4.3-1 libxau6_1:1.0.6-1 libxcb-render0_1.7-2 libxcb-shm0_1.7-2 libxcb1_1.7-2 libxdmcp6_1:1.1.0-1 libxext6_2:1.3.0-1 libxft2_2.2.0-2 libxml2_2.7.8.dfsg-2+b1 libxrender1_1:0.9.6-1 libxss1_1:1.2.1-1 libxt6_1:1.1.1-1 linux-libc-dev_2.6.39-1 login_1:4.1.4.2+svn3283-3 lsb-base_3.2-27 make_3.81-8.1 man-db_2.6.0.2-1 mawk_1.3.3-15 mount_2.17.2-9.1 ncurses-base_5.9-1 ncurses-bin_5.9-1 passwd_1:4.1.4.2+svn3283-3 patch_2.6.1-2 perl_5.12.3-7 perl-base_5.12.3-7 perl-modules_5.12.3-7 po-debconf_1.0.16+nmu1 r-base-core_2.13.0-2 r-base-dev_2.13.0-2 readline-common_6.2-2 sed_4.2.1-9 sensible-utils_0.0.6 sudo_1.7.4p6-1 sysv-rc_2.88dsf-13.7 sysvinit_2.88dsf-13.7 sysvinit-utils_2.88dsf-13.7 tar_1.25-3 tcl8.5_8.5.9-2 tk8.5_8.5.9-2 ttf-dejavu-core_2.33-1 tzdata_2011g-1 ucf_3.0025+nmu2 unzip_6.0-4 util-linux_2.17.2-9.1 x11-common_1:7.6+6 xdg-utils_1.1.0~rc1-2 xz-utils_5.0.0-2 zip_3.0-3 zlib1g_1:1.2.3.4.dfsg-3 zlib1g-dev_1:1.2.3.4.dfsg-3
+Toolchain package versions: binutils_2.21.52.20110707-1 dpkg-dev_1.16.0.3 g++-4.6_4.6.1-6 gcc-4.6_4.6.1-6 libc6-dev_2.13-10 libstdc++6_4.6.1-6 libstdc++6-4.6-dev_4.6.1-6 linux-libc-dev_2.6.39-3
+Package versions: apt_0.8.15.2 base-files_6.4 base-passwd_3.5.23 bash_4.1-3 binutils_2.21.52.20110707-1 bsdmainutils_8.2.3 bsdutils_1:2.19.1-4 build-essential_11.5 bzip2_1.0.5-6 cdbs_0.4.96 coreutils_8.5-1 cpp_4:4.6.1-2 cpp-4.6_4.6.1-6 dash_0.5.5.1-7.4 debconf_1.5.40 debfoster_2.7-1.1 debhelper_8.9.4 debian-archive-keyring_2010.08.28 debianutils_4.0.2 diffutils_1:3.0-1 dpatch_2.0.31 dpkg_1.16.0.3 dpkg-dev_1.16.0.3 e2fslibs_1.42~WIP-2011-07-02-1 e2fsprogs_1.42~WIP-2011-07-02-1 fakeroot_1.16-1 file_5.04-5+b1 findutils_4.4.2-1+b1 fontconfig_2.8.0-3 fontconfig-config_2.8.0-3 g++_4:4.6.1-2 g++-4.6_4.6.1-6 gcc_4:4.6.1-2 gcc-4.6_4.6.1-6 gcc-4.6-base_4.6.1-6 gettext_0.18.1.1-4 gettext-base_0.18.1.1-4 gfortran_4:4.6.1-2 gfortran-4.6_4.6.1-6 gnupg_1.4.11-3 gpgv_1.4.11-3 grep_2.9-1 groff-base_1.21-6 gzip_1.4-1 hostname_3.06 html2text_1.3.2a-15 initscripts_2.88dsf-13.11 insserv_1.14.0-2.1 intltool-debian_0.35.0+20060710.1 libacl1_2.2.51-3 libattr1_1:2.4.46-3 libblas-dev_1.2.20110419-2 libblas3gf_1.2.20110419-2 libblkid1_2.19.1-4 libbz2-1.0_1.0.5-6 libbz2-dev_1.0.5-6 libc-bin_2.13-10 libc-dev-bin_2.13-10 libc6_2.13-10 libc6-dev_2.13-10 libcairo2_1.10.2-6.1 libcloog-ppl0_0.15.9-3 libcomerr2_1.42~WIP-2011-07-02-1 libcroco3_0.6.2-1 libdatrie1_0.2.4-3 libdb5.1_5.1.25-10 libdpkg-perl_1.16.0.3 libexpat1_2.0.1-7 libfontconfig1_2.8.0-3 libfreetype6_2.4.6-1 libgc1c2_1:7.1-8 libgcc1_1:4.6.1-6 libgdbm3_1.8.3-10 libgfortran3_4.6.1-6 libglib2.0-0_2.28.6-1 libgmp10_2:5.0.1+dfsg-7 libgmpxx4ldbl_2:5.0.1+dfsg-7 libgomp1_4.6.1-6 libice6_2:1.0.7-2 libjpeg62_6b1-2 libjpeg8_8c-2 libjpeg8-dev_8c-2 liblapack-dev_3.3.1-1 liblapack3gf_3.3.1-1 liblzma2_5.0.0-2 libmagic1_5.04-5+b1 libmount1_2.19.1-4 libmpc2_0.9-3 libmpfr4_3.0.1-5 libncurses5_5.9-1 libncurses5-dev_5.9-1 libpam-modules_1.1.3-2 libpam-modules-bin_1.1.3-2 libpam-runtime_1.1.3-2 libpam0g_1.1.3-2 libpango1.0-0_1.28.4-2 libpaper-utils_1.1.24+nmu1 libpaper1_1.1.24+nmu1 libpcre3_8.12-4 libpcre3-dev_8.12-4 libpcrecpp0_8.12-4 libpipeline1_1.2.0-3 libpixman-1-0_0.22.2-1 libpng12-0_1.2.46-3 libpng12-dev_1.2.46-3 libppl-c4_0.11.2-4 libppl9_0.11.2-4 libpwl5_0.11.2-4 libreadline-dev_6.2-2 libreadline6_6.2-2 libreadline6-dev_6.2-2 libselinux1_2.0.98-1.1 libsepol1_2.0.42-1 libslang2_2.2.4-2 libsm6_2:1.2.0-2 libss2_1.42~WIP-2011-07-02-1 libstdc++6_4.6.1-6 libstdc++6-4.6-dev_4.6.1-6 libthai-data_0.1.15-2 libthai0_0.1.15-2 libtiff4_3.9.5-1 libtimedate-perl_1.2000-1 libunistring0_0.9.3-4 libusb-0.1-4_2:0.1.12-18 libuuid1_2.19.1-4 libx11-6_2:1.4.4-1 libx11-data_2:1.4.4-1 libxau6_1:1.0.6-3 libxcb-render0_1.7-3 libxcb-shm0_1.7-3 libxcb1_1.7-3 libxdmcp6_1:1.1.0-3 libxext6_2:1.3.0-3 libxft2_2.2.0-3 libxml2_2.7.8.dfsg-4 libxrender1_1:0.9.6-2 libxss1_1:1.2.1-2 libxt6_1:1.1.1-2 linux-libc-dev_2.6.39-3 login_1:4.1.4.2+svn3283-3 lsb-base_3.2-27 make_3.81-8.1 man-db_2.6.0.2-2 mawk_1.3.3-15 mount_2.19.1-4 multiarch-support_2.13-10 ncurses-base_5.9-1 ncurses-bin_5.9-1 passwd_1:4.1.4.2+svn3283-3 patch_2.6.1-2 perl_5.12.4-1 perl-base_5.12.4-1 perl-modules_5.12.4-1 po-debconf_1.0.16+nmu1 r-base-core_2.13.1-1 r-base-dev_2.13.1-1 readline-common_6.2-2 sed_4.2.1-9 sensible-utils_0.0.6 sudo_1.7.4p6-1 sysv-rc_2.88dsf-13.11 sysvinit_2.88dsf-13.11 sysvinit-utils_2.88dsf-13.11 tar_1.25-3 tcl8.5_8.5.10-1 tk8.5_8.5.10-1 ttf-dejavu-core_2.33-1 tzdata_2011h-3 ucf_3.0025+nmu2 unzip_6.0-5 util-linux_2.19.1-4 x11-common_1:7.6+7 xdg-utils_1.1.0~rc1-2 xz-utils_5.0.0-2 zip_3.0-4 zlib1g_1:1.2.3.4.dfsg-3 zlib1g-dev_1:1.2.3.4.dfsg-3
┌──────────────────────────────────────────────────────────────────────────────┐
│ Build │
@@ -540,34 +589,17 @@ Unpack source
─────────────
gpgv: keyblock resource `/home/buildd/.gnupg/trustedkeys.gpg': file open error
-gpgv: Signature made Thu Jun 2 04:18:41 2011 UTC using RSA key ID 2295D502
+gpgv: Signature made Sun Aug 14 11:36:35 2011 UTC using RSA key ID 2295D502
gpgv: Can't check signature: public key not found
-dpkg-source: warning: failed to verify signature on ./r-bioc-limma_3.8.2-1.dsc
-dpkg-source: info: extracting r-bioc-limma in r-bioc-limma-3.8.2
-dpkg-source: info: unpacking r-bioc-limma_3.8.2.orig.tar.gz
-dpkg-source: info: applying r-bioc-limma_3.8.2-1.diff.gz
+dpkg-source: warning: failed to verify signature on ./r-bioc-limma_3.8.3-1.dsc
+dpkg-source: info: extracting r-bioc-limma in r-bioc-limma-3.8.3
+dpkg-source: info: unpacking r-bioc-limma_3.8.3.orig.tar.gz
+dpkg-source: info: applying r-bioc-limma_3.8.3-1.diff.gz
Check disc space
────────────────
-User Environment
-────────────────
-
-HOME=/home/buildd
-LOGNAME=buildd
-PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
-SCHROOT_COMMAND=env
-SCHROOT_GID=1009
-SCHROOT_GROUP=buildd
-SCHROOT_SESSION_ID=sid-powerpc-sbuild-cb29affd-46da-4a5f-aa4a-db3f618281f7
-SCHROOT_UID=2952
-SCHROOT_USER=buildd
-SHELL=/bin/sh
-TERM=screen
-USER=buildd
-USERNAME=buildd
-
dpkg-buildpackage
─────────────────
@@ -577,18 +609,18 @@ dpkg-buildpackage: export CXXFLAGS from dpkg-buildflags (origin: vendor): -g -O2
dpkg-buildpackage: export FFLAGS from dpkg-buildflags (origin: vendor): -g -O2
dpkg-buildpackage: export LDFLAGS from dpkg-buildflags (origin: vendor):
dpkg-buildpackage: source package r-bioc-limma
-dpkg-buildpackage: source version 3.8.2-1
- dpkg-source --before-build r-bioc-limma-3.8.2
+dpkg-buildpackage: source version 3.8.3-1
+ dpkg-source --before-build r-bioc-limma-3.8.3
dpkg-buildpackage: host architecture powerpc
fakeroot debian/rules clean
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
test -x debian/rules
dh_testroot
/usr/bin/make -f debian/rules reverse-config
+make[1]: Entering directory `/build/buildd-r-bioc-limma_3.8.3-1-powerpc-tYLPdV/r-bioc-limma-3.8.3'
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
-make[1]: Entering directory `/build/buildd-r-bioc-limma_3.8.2-1-powerpc-8lFCUp/r-bioc-limma-3.8.2'
make[1]: Nothing to be done for `reverse-config'.
-make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.8.2-1-powerpc-8lFCUp/r-bioc-limma-3.8.2'
+make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.8.3-1-powerpc-tYLPdV/r-bioc-limma-3.8.3'
if [ "reverse-patches" = "reverse-patches" ]; then rm -f debian/stamp-patched; fi
patches:
if [ "reverse-patches" != "reverse-patches" ]; then touch debian/stamp-patched; fi
@@ -609,20 +641,20 @@ rm -f config.log config.status
test -x debian/rules
mkdir -p "."
/usr/bin/make -f debian/rules reverse-config
-make[1]: Entering directory `/build/buildd-r-bioc-limma_3.8.2-1-powerpc-8lFCUp/r-bioc-limma-3.8.2'
+make[1]: Entering directory `/build/buildd-r-bioc-limma_3.8.3-1-powerpc-tYLPdV/r-bioc-limma-3.8.3'
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
make[1]: Nothing to be done for `reverse-config'.
-make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.8.2-1-powerpc-8lFCUp/r-bioc-limma-3.8.2'
+make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.8.3-1-powerpc-tYLPdV/r-bioc-limma-3.8.3'
if [ "debian/stamp-patched" = "reverse-patches" ]; then rm -f debian/stamp-patched; fi
patches:
if [ "debian/stamp-patched" != "reverse-patches" ]; then touch debian/stamp-patched; fi
if [ "debian/stamp-patched" != "reverse-patches" ] ; then \
/usr/bin/make -f debian/rules update-config ; \
fi
-make[1]: Entering directory `/build/buildd-r-bioc-limma_3.8.2-1-powerpc-8lFCUp/r-bioc-limma-3.8.2'
+make[1]: Entering directory `/build/buildd-r-bioc-limma_3.8.3-1-powerpc-tYLPdV/r-bioc-limma-3.8.3'
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
make[1]: Nothing to be done for `update-config'.
-make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.8.2-1-powerpc-8lFCUp/r-bioc-limma-3.8.2'
+make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.8.3-1-powerpc-tYLPdV/r-bioc-limma-3.8.3'
fakeroot debian/rules binary-arch
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
test -x debian/rules
@@ -632,24 +664,24 @@ dh_installdirs -A
mkdir -p "."
dh_installdirs usr/lib/R/site-library
if test -f /usr/bin/xvfb-run; then \
- xvfb-run \
- R CMD INSTALL -l /build/buildd-r-bioc-limma_3.8.2-1-powerpc-8lFCUp/r-bioc-limma-3.8.2/debian/r-bioc-limma/usr/lib/R/site-library --clean \
+ xvfb-run -a \
+ R CMD INSTALL -l /build/buildd-r-bioc-limma_3.8.3-1-powerpc-tYLPdV/r-bioc-limma-3.8.3/debian/r-bioc-limma/usr/lib/R/site-library --clean \
. ; \
else \
- R CMD INSTALL -l /build/buildd-r-bioc-limma_3.8.2-1-powerpc-8lFCUp/r-bioc-limma-3.8.2/debian/r-bioc-limma/usr/lib/R/site-library \
+ R CMD INSTALL -l /build/buildd-r-bioc-limma_3.8.3-1-powerpc-tYLPdV/r-bioc-limma-3.8.3/debian/r-bioc-limma/usr/lib/R/site-library \
--clean . ;\
fi
* installing *source* package 'limma' ...
** libs
-make[1]: Entering directory `/build/buildd-r-bioc-limma_3.8.2-1-powerpc-8lFCUp/r-bioc-limma-3.8.2/src'
+make[1]: Entering directory `/build/buildd-r-bioc-limma_3.8.3-1-powerpc-tYLPdV/r-bioc-limma-3.8.3/src'
gcc -I/usr/share/R/include -fpic -std=gnu99 -O3 -pipe -g -c normexp.c -o normexp.o
normexp.c: In function 'fit_saddle_nelder_mead':
normexp.c:153:3: warning: floating constant exceeds range of 'double' [-Woverflow]
gcc -shared -o limma.so normexp.o -L/usr/lib/R/lib -lR
-make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.8.2-1-powerpc-8lFCUp/r-bioc-limma-3.8.2/src'
-make[1]: Entering directory `/build/buildd-r-bioc-limma_3.8.2-1-powerpc-8lFCUp/r-bioc-limma-3.8.2/src'
-make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.8.2-1-powerpc-8lFCUp/r-bioc-limma-3.8.2/src'
-installing to /build/buildd-r-bioc-limma_3.8.2-1-powerpc-8lFCUp/r-bioc-limma-3.8.2/debian/r-bioc-limma/usr/lib/R/site-library/limma/libs
+make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.8.3-1-powerpc-tYLPdV/r-bioc-limma-3.8.3/src'
+make[1]: Entering directory `/build/buildd-r-bioc-limma_3.8.3-1-powerpc-tYLPdV/r-bioc-limma-3.8.3/src'
+make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.8.3-1-powerpc-tYLPdV/r-bioc-limma-3.8.3/src'
+installing to /build/buildd-r-bioc-limma_3.8.3-1-powerpc-tYLPdV/r-bioc-limma-3.8.3/debian/r-bioc-limma/usr/lib/R/site-library/limma/libs
** R
** inst
** preparing package for lazy loading
@@ -659,17 +691,17 @@ installing to /build/buildd-r-bioc-limma_3.8.2-1-powerpc-8lFCUp/r-bioc-limma-3.8
** testing if installed package can be loaded
* DONE (limma)
-rm -vf /build/buildd-r-bioc-limma_3.8.2-1-powerpc-8lFCUp/r-bioc-limma-3.8.2/debian/r-bioc-limma/usr/lib/R/site-library/R.css \
- /build/buildd-r-bioc-limma_3.8.2-1-powerpc-8lFCUp/r-bioc-limma-3.8.2/debian/r-bioc-limma/usr/lib/R/site-library/limma/COPYING \
- /build/buildd-r-bioc-limma_3.8.2-1-powerpc-8lFCUp/r-bioc-limma-3.8.2/debian/r-bioc-limma/usr/lib/R/site-library/limma/LICENSE.txt
+rm -vf /build/buildd-r-bioc-limma_3.8.3-1-powerpc-tYLPdV/r-bioc-limma-3.8.3/debian/r-bioc-limma/usr/lib/R/site-library/R.css \
+ /build/buildd-r-bioc-limma_3.8.3-1-powerpc-tYLPdV/r-bioc-limma-3.8.3/debian/r-bioc-limma/usr/lib/R/site-library/limma/COPYING \
+ /build/buildd-r-bioc-limma_3.8.3-1-powerpc-tYLPdV/r-bioc-limma-3.8.3/debian/r-bioc-limma/usr/lib/R/site-library/limma/LICENSE.txt
if test -f debian/overrides; then \
- install -d /build/buildd-r-bioc-limma_3.8.2-1-powerpc-8lFCUp/r-bioc-limma-3.8.2/debian/r-bioc-limma/usr/share/lintian/overrides ; \
+ install -d /build/buildd-r-bioc-limma_3.8.3-1-powerpc-tYLPdV/r-bioc-limma-3.8.3/debian/r-bioc-limma/usr/share/lintian/overrides ; \
install -m 0644 debian/overrides \
- /build/buildd-r-bioc-limma_3.8.2-1-powerpc-8lFCUp/r-bioc-limma-3.8.2/debian/r-bioc-limma/usr/share/lintian/overrides/r-bioc-limma; \
+ /build/buildd-r-bioc-limma_3.8.3-1-powerpc-tYLPdV/r-bioc-limma-3.8.3/debian/r-bioc-limma/usr/share/lintian/overrides/r-bioc-limma; \
fi
Adding cdbs dependencies to debian/r-bioc-limma.substvars
dh_installdirs -pr-bioc-limma
-echo "R:Depends=r-base-core (>= 2.13.0~)" >> debian/r-bioc-limma.substvars
+echo "R:Depends=r-base-core (>= 2.13.1~)" >> debian/r-bioc-limma.substvars
dh_installdocs -pr-bioc-limma
dh_installexamples -pr-bioc-limma
dh_installman -pr-bioc-limma
@@ -701,58 +733,58 @@ dh_shlibdeps -pr-bioc-limma
dh_gencontrol -pr-bioc-limma
dh_md5sums -pr-bioc-limma
dh_builddeb -pr-bioc-limma
-dpkg-deb: building package `r-bioc-limma' in `../r-bioc-limma_3.8.2-1_powerpc.deb'.
- dpkg-genchanges -B -mpowerpc Build Daemon (porpora) <buildd_powerpc-porpora at buildd.debian.org> >../r-bioc-limma_3.8.2-1_powerpc.changes
+dpkg-deb: building package `r-bioc-limma' in `../r-bioc-limma_3.8.3-1_powerpc.deb'.
+ dpkg-genchanges -B -mpowerpc Build Daemon (poulenc) <buildd_powerpc-poulenc at buildd.debian.org> >../r-bioc-limma_3.8.3-1_powerpc.changes
dpkg-genchanges: arch-specific upload - not including arch-independent packages
dpkg-genchanges: binary-only upload - not including any source code
- dpkg-source --after-build r-bioc-limma-3.8.2
+ dpkg-source --after-build r-bioc-limma-3.8.3
dpkg-buildpackage: binary only upload (no source included)
────────────────────────────────────────────────────────────────────────────────
-Build finished at 20110602-1331
+Build finished at 20110814-1219
-r-bioc-limma_3.8.2-1_powerpc.changes:
+r-bioc-limma_3.8.3-1_powerpc.changes:
Format: 1.8
-Date: Thu, 02 Jun 2011 13:07:58 +0900
+Date: Sun, 14 Aug 2011 20:30:21 +0900
Source: r-bioc-limma
Binary: r-bioc-limma
Architecture: powerpc
-Version: 3.8.2-1
+Version: 3.8.3-1
Distribution: sid
Urgency: low
-Maintainer: powerpc Build Daemon (porpora) <buildd_powerpc-porpora at buildd.debian.org>
+Maintainer: powerpc Build Daemon (poulenc) <buildd_powerpc-poulenc at buildd.debian.org>
Changed-By: Charles Plessy <plessy at debian.org>
Description:
r-bioc-limma - linear models for microarray data
-Closes: 628548
Changes:
- r-bioc-limma (3.8.2-1) unstable; urgency=low
+ r-bioc-limma (3.8.3-1) unstable; urgency=low
.
- * Initial release (closes: #628548).
+ * New upstream release.
+ * [e891bb6b] Corrected VCS-Git url.
Checksums-Sha1:
- 39c84885b272a9ad2486c7a5eecf42f6fe5f8585 1398348 r-bioc-limma_3.8.2-1_powerpc.deb
+ 48fc27a5373e095097757733d32328ae4862f00f 1399766 r-bioc-limma_3.8.3-1_powerpc.deb
Checksums-Sha256:
- 0f0ab4b086e1168e8d440961f354f87f90263e5ae25c2c7ab31c9ec5d7cfab46 1398348 r-bioc-limma_3.8.2-1_powerpc.deb
+ c65941d0db1a5fa4564dafb10e47ecc15de17a8307a2dfe7fd79090cfdb5492d 1399766 r-bioc-limma_3.8.3-1_powerpc.deb
Files:
- 970e6662b091455f2700488c2e2b6bfb 1398348 gnu-r optional r-bioc-limma_3.8.2-1_powerpc.deb
+ 6adfff4ba7a9eb11cc9edd7529913b8f 1399766 gnu-r optional r-bioc-limma_3.8.3-1_powerpc.deb
┌──────────────────────────────────────────────────────────────────────────────┐
│ Package contents │
└──────────────────────────────────────────────────────────────────────────────┘
-r-bioc-limma_3.8.2-1_powerpc.deb
+r-bioc-limma_3.8.3-1_powerpc.deb
────────────────────────────────
new debian package, version 2.0.
- size 1398348 bytes: control archive= 1508 bytes.
+ size 1399766 bytes: control archive= 1514 bytes.
771 bytes, 16 lines control
2226 bytes, 29 lines md5sums
Package: r-bioc-limma
- Version: 3.8.2-1
+ Version: 3.8.3-1
Architecture: powerpc
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
- Installed-Size: 1676
- Depends: libc6 (>= 2.1.3), r-base-core (>= 2.13.0~)
+ Installed-Size: 1680
+ Depends: libc6 (>= 2.1.3), r-base-core (>= 2.13.1~)
Section: gnu-r
Priority: optional
Homepage: http://bioinf.wehi.edu.au/limma/
@@ -764,50 +796,50 @@ r-bioc-limma_3.8.2-1_powerpc.deb
apply to all array platforms and treat Affymetrix, single channel and two
channel experiments in a unified way.
-drwxr-xr-x root/root 0 2011-06-02 13:31 ./
-drwxr-xr-x root/root 0 2011-06-02 13:31 ./usr/
-drwxr-xr-x root/root 0 2011-06-02 13:31 ./usr/share/
-drwxr-xr-x root/root 0 2011-06-02 13:31 ./usr/share/doc/
-drwxr-xr-x root/root 0 2011-06-02 13:31 ./usr/share/doc/r-bioc-limma/
--rw-r--r-- root/root 25983 2011-05-20 04:14 ./usr/share/doc/r-bioc-limma/changelog.gz
--rw-r--r-- root/root 2116 2011-06-02 13:31 ./usr/share/doc/r-bioc-limma/copyright
--rw-r--r-- root/root 161 2011-06-02 13:31 ./usr/share/doc/r-bioc-limma/changelog.Debian.gz
-drwxr-xr-x root/root 0 2011-06-02 13:31 ./usr/lib/
-drwxr-xr-x root/root 0 2011-06-02 13:31 ./usr/lib/R/
-drwxr-xr-x root/root 0 2011-06-02 13:31 ./usr/lib/R/site-library/
-drwxr-xr-x root/root 0 2011-06-02 13:31 ./usr/lib/R/site-library/limma/
-drwxr-xr-x root/root 0 2011-06-02 13:31 ./usr/lib/R/site-library/limma/libs/
--rw-r--r-- root/root 8408 2011-06-02 13:31 ./usr/lib/R/site-library/limma/libs/limma.so
-drwxr-xr-x root/root 0 2011-06-02 13:31 ./usr/lib/R/site-library/limma/html/
--rw-r--r-- root/root 34039 2011-06-02 13:31 ./usr/lib/R/site-library/limma/html/00Index.html
--rw-r--r-- root/root 1179 2011-06-02 13:31 ./usr/lib/R/site-library/limma/html/R.css
-drwxr-xr-x root/root 0 2011-06-02 13:31 ./usr/lib/R/site-library/limma/R/
--rw-r--r-- root/root 3740 2011-06-02 13:31 ./usr/lib/R/site-library/limma/R/limma.rdx
--rw-r--r-- root/root 172733 2011-06-02 13:31 ./usr/lib/R/site-library/limma/R/limma.rdb
--rw-r--r-- root/root 384 2011-06-02 13:31 ./usr/lib/R/site-library/limma/R/limma
--rw-r--r-- root/root 1011 2011-06-02 13:31 ./usr/lib/R/site-library/limma/DESCRIPTION
--rw-r--r-- root/root 9360 2011-06-02 13:31 ./usr/lib/R/site-library/limma/INDEX
-drwxr-xr-x root/root 0 2011-06-02 13:31 ./usr/lib/R/site-library/limma/Meta/
--rw-r--r-- root/root 1054 2011-06-02 13:31 ./usr/lib/R/site-library/limma/Meta/package.rds
--rw-r--r-- root/root 5946 2011-06-02 13:31 ./usr/lib/R/site-library/limma/Meta/Rd.rds
--rw-r--r-- root/root 217 2011-06-02 13:31 ./usr/lib/R/site-library/limma/Meta/vignette.rds
--rw-r--r-- root/root 2853 2011-06-02 13:31 ./usr/lib/R/site-library/limma/Meta/links.rds
--rw-r--r-- root/root 5522 2011-06-02 13:31 ./usr/lib/R/site-library/limma/Meta/hsearch.rds
--rw-r--r-- root/root 503 2011-06-02 13:31 ./usr/lib/R/site-library/limma/Meta/nsInfo.rds
-drwxr-xr-x root/root 0 2011-06-02 13:31 ./usr/lib/R/site-library/limma/help/
--rw-r--r-- root/root 6150 2011-06-02 13:31 ./usr/lib/R/site-library/limma/help/AnIndex
--rw-r--r-- root/root 1347 2011-06-02 13:31 ./usr/lib/R/site-library/limma/help/paths.rds
--rw-r--r-- root/root 3257 2011-06-02 13:31 ./usr/lib/R/site-library/limma/help/limma.rdx
--rw-r--r-- root/root 2361 2011-06-02 13:31 ./usr/lib/R/site-library/limma/help/aliases.rds
--rw-r--r-- root/root 450409 2011-06-02 13:31 ./usr/lib/R/site-library/limma/help/limma.rdb
-drwxr-xr-x root/root 0 2011-06-02 13:31 ./usr/lib/R/site-library/limma/doc/
--rw-r--r-- root/root 45616 2011-06-02 13:31 ./usr/lib/R/site-library/limma/doc/limma.pdf
--rwxr-xr-x root/root 84633 2011-06-02 13:31 ./usr/lib/R/site-library/limma/doc/changelog.txt
--rw-r--r-- root/root 687780 2011-06-02 13:31 ./usr/lib/R/site-library/limma/doc/usersguide.pdf
--rwxr-xr-x root/root 673 2011-06-02 13:31 ./usr/lib/R/site-library/limma/doc/index.html
--rwxr-xr-x root/root 1711 2011-06-02 13:31 ./usr/lib/R/site-library/limma/doc/limma.Rnw
--rw-r--r-- root/root 1872 2011-06-02 13:31 ./usr/lib/R/site-library/limma/NAMESPACE
--rwxr-xr-x root/root 1230 2011-06-02 13:31 ./usr/lib/R/site-library/limma/CITATION
+drwxr-xr-x root/root 0 2011-08-14 12:19 ./
+drwxr-xr-x root/root 0 2011-08-14 12:19 ./usr/
+drwxr-xr-x root/root 0 2011-08-14 12:19 ./usr/share/
+drwxr-xr-x root/root 0 2011-08-14 12:19 ./usr/share/doc/
+drwxr-xr-x root/root 0 2011-08-14 12:19 ./usr/share/doc/r-bioc-limma/
+-rw-r--r-- root/root 26050 2011-08-08 16:14 ./usr/share/doc/r-bioc-limma/changelog.gz
+-rw-r--r-- root/root 2117 2011-08-14 12:19 ./usr/share/doc/r-bioc-limma/copyright
+-rw-r--r-- root/root 234 2011-08-14 12:19 ./usr/share/doc/r-bioc-limma/changelog.Debian.gz
+drwxr-xr-x root/root 0 2011-08-14 12:19 ./usr/lib/
+drwxr-xr-x root/root 0 2011-08-14 12:19 ./usr/lib/R/
+drwxr-xr-x root/root 0 2011-08-14 12:19 ./usr/lib/R/site-library/
+drwxr-xr-x root/root 0 2011-08-14 12:19 ./usr/lib/R/site-library/limma/
+-rw-r--r-- root/root 1872 2011-08-14 12:19 ./usr/lib/R/site-library/limma/NAMESPACE
+-rw-r--r-- root/root 1011 2011-08-14 12:19 ./usr/lib/R/site-library/limma/DESCRIPTION
+drwxr-xr-x root/root 0 2011-08-14 12:19 ./usr/lib/R/site-library/limma/help/
+-rw-r--r-- root/root 2363 2011-08-14 12:19 ./usr/lib/R/site-library/limma/help/aliases.rds
+-rw-r--r-- root/root 1350 2011-08-14 12:19 ./usr/lib/R/site-library/limma/help/paths.rds
+-rw-r--r-- root/root 3255 2011-08-14 12:19 ./usr/lib/R/site-library/limma/help/limma.rdx
+-rw-r--r-- root/root 6150 2011-08-14 12:19 ./usr/lib/R/site-library/limma/help/AnIndex
+-rw-r--r-- root/root 450717 2011-08-14 12:19 ./usr/lib/R/site-library/limma/help/limma.rdb
+drwxr-xr-x root/root 0 2011-08-14 12:19 ./usr/lib/R/site-library/limma/libs/
+-rw-r--r-- root/root 8408 2011-08-14 12:19 ./usr/lib/R/site-library/limma/libs/limma.so
+drwxr-xr-x root/root 0 2011-08-14 12:19 ./usr/lib/R/site-library/limma/html/
+-rw-r--r-- root/root 1179 2011-08-14 12:19 ./usr/lib/R/site-library/limma/html/R.css
+-rw-r--r-- root/root 34039 2011-08-14 12:19 ./usr/lib/R/site-library/limma/html/00Index.html
+drwxr-xr-x root/root 0 2011-08-14 12:19 ./usr/lib/R/site-library/limma/Meta/
+-rw-r--r-- root/root 217 2011-08-14 12:19 ./usr/lib/R/site-library/limma/Meta/vignette.rds
+-rw-r--r-- root/root 5947 2011-08-14 12:19 ./usr/lib/R/site-library/limma/Meta/Rd.rds
+-rw-r--r-- root/root 5524 2011-08-14 12:19 ./usr/lib/R/site-library/limma/Meta/hsearch.rds
+-rw-r--r-- root/root 2854 2011-08-14 12:19 ./usr/lib/R/site-library/limma/Meta/links.rds
+-rw-r--r-- root/root 505 2011-08-14 12:19 ./usr/lib/R/site-library/limma/Meta/nsInfo.rds
+-rw-r--r-- root/root 1056 2011-08-14 12:19 ./usr/lib/R/site-library/limma/Meta/package.rds
+-rw-r--r-- root/root 9360 2011-08-14 12:19 ./usr/lib/R/site-library/limma/INDEX
+drwxr-xr-x root/root 0 2011-08-14 12:19 ./usr/lib/R/site-library/limma/R/
+-rw-r--r-- root/root 384 2011-08-14 12:19 ./usr/lib/R/site-library/limma/R/limma
+-rw-r--r-- root/root 3743 2011-08-14 12:19 ./usr/lib/R/site-library/limma/R/limma.rdx
+-rw-r--r-- root/root 173277 2011-08-14 12:19 ./usr/lib/R/site-library/limma/R/limma.rdb
+drwxr-xr-x root/root 0 2011-08-14 12:19 ./usr/lib/R/site-library/limma/doc/
+-rw-r--r-- root/root 687780 2011-08-14 12:19 ./usr/lib/R/site-library/limma/doc/usersguide.pdf
+-rw-r--r-- root/root 45616 2011-08-14 12:19 ./usr/lib/R/site-library/limma/doc/limma.pdf
+-rwxr-xr-x root/root 84899 2011-08-14 12:19 ./usr/lib/R/site-library/limma/doc/changelog.txt
+-rwxr-xr-x root/root 1711 2011-08-14 12:19 ./usr/lib/R/site-library/limma/doc/limma.Rnw
+-rwxr-xr-x root/root 673 2011-08-14 12:19 ./usr/lib/R/site-library/limma/doc/index.html
+-rwxr-xr-x root/root 1230 2011-08-14 12:19 ./usr/lib/R/site-library/limma/CITATION
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -821,7 +853,7 @@ Built successfully
│ Post Build │
└──────────────────────────────────────────────────────────────────────────────┘
-Purging /var/lib/schroot/mount/sid-powerpc-sbuild-cb29affd-46da-4a5f-aa4a-db3f618281f7/build/buildd-r-bioc-limma_3.8.2-1-powerpc-8lFCUp
+Purging /var/lib/schroot/mount/sid-powerpc-sbuild-c56f29f2-dab8-4b8a-99b4-6e7b66ecd23d/build/buildd-r-bioc-limma_3.8.3-1-powerpc-tYLPdV
Not cleaning session: cloned chroot in use
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -829,18 +861,18 @@ Not cleaning session: cloned chroot in use
└──────────────────────────────────────────────────────────────────────────────┘
Architecture: powerpc
-Build-Space: 5080
-Build-Time: 33
+Build-Space: 5084
+Build-Time: 27
Distribution: sid
-Install-Time: 129
-Job: r-bioc-limma_3.8.2-1
+Install-Time: 163
+Job: r-bioc-limma_3.8.3-1
Package: r-bioc-limma
-Package-Time: 214
-Source-Version: 3.8.2-1
-Space: 5080
+Package-Time: 225
+Source-Version: 3.8.3-1
+Space: 5084
Status: successful
-Version: 3.8.2-1
+Version: 3.8.3-1
────────────────────────────────────────────────────────────────────────────────
-Finished at 20110602-1331
-Build needed 00:03:34, 5080k disc space
-Signature with key 'CDFA0A89' requested:
+Finished at 20110814-1219
+Build needed 00:03:45, 5084k disc space
+Signature with key '779E1DD6' requested:
diff --git a/s390.log b/s390.log
index 27d8a84..0809132 100644
--- a/s390.log
+++ b/s390.log
@@ -1,4 +1,4 @@
-From buildd at zandonai.debian.org Thu Jun 02 14:11:58 2011
+From buildd at zandonai.debian.org Sun Aug 14 12:57:32 2011
Return-path: <buildd at zandonai.debian.org>
Received: from kokkonen.debian.org ([2001:41b8:202:deb:1a1a:0:52c3:4b61])
from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
@@ -6,64 +6,64 @@ Received: from kokkonen.debian.org ([2001:41b8:202:deb:1a1a:0:52c3:4b61])
EMAIL=hostmaster at kokkonen.debian.org (verified)
by grieg.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
(Exim 4.72) (envelope-from <buildd at zandonai.debian.org>)
- id 1QS8cw-00052t-G2
- for logs at buildd.debian.org; Thu, 02 Jun 2011 14:11:58 +0000
+ id 1QsaFv-0003VC-P6
+ for logs at buildd.debian.org; Sun, 14 Aug 2011 12:57:32 +0000
Received: from zandonai.debian.org ([80.245.147.46])
from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
CN=zandonai.debian.org,
EMAIL=hostmaster at zandonai.debian.org (verified)
by kokkonen.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
(Exim 4.72) (envelope-from <buildd at zandonai.debian.org>)
- id 1QS8cv-0005dc-P4; Thu, 02 Jun 2011 14:11:57 +0000
+ id 1QsaFt-0006Lj-9S; Sun, 14 Aug 2011 12:57:29 +0000
Received: from buildd by zandonai.debian.org with local (Exim 4.72)
(envelope-from <buildd at zandonai.debian.org>)
- id 1QS8cv-00028Q-F8; Thu, 02 Jun 2011 14:11:57 +0000
-Message-Id: <E1QS8cv-00028Q-F8 at zandonai.debian.org>
+ id 1QsaFs-0002ao-WD; Sun, 14 Aug 2011 12:57:29 +0000
+Message-Id: <E1QsaFs-0002ao-WD at zandonai.debian.org>
MIME-Version: 1.0
Content-Transfer-Encoding: binary
X-Mailer: MIME::Lite 3.027 (F2.77; B3.08; Q3.08)
-Date: Thu, 2 Jun 2011 14:11:57 +0000
+Date: Sun, 14 Aug 2011 12:57:28 +0000
From: buildd on zandonai <buildd at zandonai.debian.org>
To: phil+buildd at philkern.de,logs at buildd.debian.org
-Subject: Log for successful build of r-bioc-limma_3.8.2-1 on s390 (dist=sid)
-Key-Id: 9BD94C88
+Subject: Log for successful build of r-bioc-limma_3.8.3-1 on s390 (dist=sid)
+Key-Id: 2D941D26
Delivered-To: logs at buildd.debian.org
sbuild (Debian sbuild) 0.61.0 (23 Feb 2011) on zandonai.debian.org
╔══════════════════════════════════════════════════════════════════════════════╗
-║ r-bioc-limma 3.8.2-1 (s390) 02 Jun 2011 14:09 ║
+║ r-bioc-limma 3.8.3-1 (s390) 14 Aug 2011 12:56 ║
╚══════════════════════════════════════════════════════════════════════════════╝
Package: r-bioc-limma
-Version: 3.8.2-1
-Source Version: 3.8.2-1
+Version: 3.8.3-1
+Source Version: 3.8.3-1
Architecture: s390
Get:1 http://ftp.de.debian.org unstable InRelease [146 kB]
-Get:2 http://incoming.debian.org unstable InRelease [146 kB]
-Get:3 http://ftp.de.debian.org unstable/main Sources [5268 kB]
+Get:2 http://ftp.de.debian.org unstable/main Sources [5431 kB]
+Get:3 http://incoming.debian.org unstable InRelease [146 kB]
Ign http://incoming.debian.org InRelease
Get:4 http://incoming.debian.org Release.gpg [836 B]
-Get:5 http://incoming.debian.org unstable/main Sources [5270 kB]
-Get:6 http://ftp.de.debian.org unstable/contrib Sources [49.7 kB]
-Get:7 http://ftp.de.debian.org unstable/non-free Sources [92.2 kB]
-Get:8 http://ftp.de.debian.org unstable/main s390 Packages [7160 kB]
-Get:9 http://ftp.de.debian.org unstable/contrib s390 Packages [53.0 kB]
+Get:5 http://incoming.debian.org unstable/main Sources [5431 kB]
+Get:6 http://ftp.de.debian.org unstable/contrib Sources [52.5 kB]
+Get:7 http://ftp.de.debian.org unstable/non-free Sources [95.7 kB]
+Get:8 http://ftp.de.debian.org unstable/main s390 Packages [7399 kB]
+Get:9 http://ftp.de.debian.org unstable/contrib s390 Packages [53.7 kB]
Ign http://ftp.de.debian.org unstable/contrib TranslationIndex
-Get:10 http://ftp.de.debian.org unstable/main TranslationIndex [2264 B]
+Get:10 http://ftp.de.debian.org unstable/main TranslationIndex [2185 B]
Ign http://ftp.de.debian.org unstable/contrib Translation-en
-Get:11 http://incoming.debian.org unstable/contrib Sources [49.7 kB]
-Get:12 http://incoming.debian.org unstable/non-free Sources [92.2 kB]
-Get:13 http://incoming.debian.org unstable/main s390 Packages [7170 kB]
-Get:14 http://incoming.debian.org unstable/contrib s390 Packages [53.0 kB]
+Get:11 http://incoming.debian.org unstable/contrib Sources [52.5 kB]
+Get:12 http://incoming.debian.org unstable/non-free Sources [95.7 kB]
+Get:13 http://incoming.debian.org unstable/main s390 Packages [7399 kB]
+Get:14 http://incoming.debian.org unstable/contrib s390 Packages [53.7 kB]
Ign http://incoming.debian.org unstable/contrib TranslationIndex
-Get:15 http://incoming.debian.org unstable/main TranslationIndex [2264 B]
+Get:15 http://incoming.debian.org unstable/main TranslationIndex [2185 B]
Get:16 http://incoming.debian.org Release [1604 B]
-Get:17 http://incoming.debian.org Sources [36.8 kB]
-Get:18 http://incoming.debian.org Packages [370 kB]
+Get:17 http://incoming.debian.org Sources [24.6 kB]
+Get:18 http://incoming.debian.org Packages [107 kB]
Ign http://incoming.debian.org unstable/contrib Translation-en
Ign http://incoming.debian.org Translation-en
-Fetched 26.0 MB in 26s (978 kB/s)
+Fetched 26.5 MB in 24s (1097 kB/s)
Reading package lists...
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -83,12 +83,12 @@ Reading package lists...
Building dependency tree...
Reading state information...
NOTICE: 'r-bioc-limma' packaging is maintained in the 'Git' version control system at:
-git://anonscm.debian.org/debian-med/r-bioc-limma.git
+git://git.debian.org/git/debian-med/r-bioc-limma.git
Need to get 921 kB of source archives.
-Get:1 http://incoming.debian.org/buildd-unstable/ r-bioc-limma 3.8.2-1 (dsc) [1931 B]
-Get:2 http://incoming.debian.org/buildd-unstable/ r-bioc-limma 3.8.2-1 (tar) [917 kB]
-Get:3 http://incoming.debian.org/buildd-unstable/ r-bioc-limma 3.8.2-1 (diff) [2158 B]
-Fetched 921 kB in 2s (448 kB/s)
+Get:1 http://incoming.debian.org/buildd-unstable/ r-bioc-limma 3.8.3-1 (dsc) [1931 B]
+Get:2 http://incoming.debian.org/buildd-unstable/ r-bioc-limma 3.8.3-1 (tar) [917 kB]
+Get:3 http://incoming.debian.org/buildd-unstable/ r-bioc-limma 3.8.3-1 (diff) [2212 B]
+Fetched 921 kB in 2s (455 kB/s)
Download complete and in download only mode
Check arch
@@ -102,18 +102,18 @@ Check arch
Build-Depends: build-essential, fakeroot
Checking for already installed dependencies...
build-essential: already installed (11.5)
-fakeroot: already installed (1.15.1-1)
+fakeroot: already installed (1.16-1)
Checking for dependency conflicts...
Installing positive dependencies:
Reading package lists...
Building dependency tree...
Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 15 not upgraded.
+0 upgraded, 0 newly installed, 0 to remove and 9 not upgraded.
Removing negative dependencies:
Reading package lists...
Building dependency tree...
Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 15 not upgraded.
+0 upgraded, 0 newly installed, 0 to remove and 9 not upgraded.
Checking correctness of dependencies...
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -122,68 +122,65 @@ Checking correctness of dependencies...
Build-Depends: base-files, base-passwd, bash, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, ncurses-base, ncurses-bin, perl-base, sed, login, sysvinit-utils, sysvinit, tar, bsdutils, mount, util-linux, libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 8), cdbs, r-base-dev (>= 2.10.0)
Checking for already installed dependencies...
-base-files: already installed (6.3)
-base-passwd: already installed (3.5.22)
+base-files: already installed (6.5)
+base-passwd: already installed (3.5.23)
bash: already installed (4.1-3)
coreutils: already installed (8.5-1)
dash: already installed (0.5.5.1-7.4)
-debianutils: already installed (4)
+debianutils: already installed (4.0.2)
diffutils: already installed (1:3.0-1)
dpkg: already installed (1.16.0.3)
-e2fsprogs: already installed (1.41.12-4)
+e2fsprogs: already installed (1.42~WIP-2011-07-02-1)
findutils: already installed (4.4.2-1+b1)
-grep: already installed (2.6.3-3)
-gzip: already installed (1.3.12-9)
+grep: already installed (2.9-1)
+gzip: already installed (1.4-1)
hostname: already installed (3.06)
ncurses-base: already installed (5.9-1)
ncurses-bin: already installed (5.9-1)
-perl-base: already installed (5.12.3-7)
+perl-base: already installed (5.12.4-2)
sed: already installed (4.2.1-9)
login: already installed (1:4.1.4.2+svn3283-3)
-sysvinit-utils: already installed (2.88dsf-13.7)
-sysvinit: already installed (2.88dsf-13.7)
+sysvinit-utils: already installed (2.88dsf-13.11)
+sysvinit: already installed (2.88dsf-13.11)
tar: already installed (1.25-3)
-bsdutils: already installed (1:2.17.2-9.1)
-mount: already installed (2.17.2-9.1)
-util-linux: already installed (2.17.2-9.1)
-libc6-dev: already installed (2.13-4)
-gcc: already installed (4:4.6.0-5 >= 4:4.4.3 is satisfied)
-g++: already installed (4:4.6.0-5 >= 4:4.4.3 is satisfied)
+bsdutils: already installed (1:2.19.1-5)
+mount: already installed (2.19.1-5)
+util-linux: already installed (2.19.1-5)
+libc6-dev: already installed (2.13-15)
+gcc: already installed (4:4.6.1-2 >= 4:4.4.3 is satisfied)
+g++: already installed (4:4.6.1-2 >= 4:4.4.3 is satisfied)
make: already installed (3.81-8.1)
dpkg-dev: already installed (1.16.0.3 >= 1.13.5 is satisfied)
debhelper: missing
-Using default version 8.1.6
+Using default version 8.9.4
cdbs: missing
r-base-dev: missing
-Using default version 2.13.0-2
+Using default version 2.13.1-1
Checking for dependency conflicts...
Installing positive dependencies: debhelper cdbs r-base-dev
Reading package lists...
Building dependency tree...
Reading state information...
The following extra packages will be installed:
- bsdmainutils cpp-4.6 dpatch file fontconfig fontconfig-config g++-4.6
- gcc-4.6 gcc-4.6-base gettext gettext-base gfortran gfortran-4.6 groff-base
- html2text intltool-debian libblas-dev libblas3gf libbz2-dev libcairo2
- libcroco3 libdatrie1 libexpat1 libfontconfig1 libfreetype6 libgcc1
- libgfortran3 libglib2.0-0 libgomp1 libice6 libjpeg62 libjpeg62-dev
- liblapack-dev liblapack3gf libmagic1 libncurses5-dev libpango1.0-0
- libpaper-utils libpaper1 libpcre3 libpcre3-dev libpcrecpp0 libpipeline1
- libpixman-1-0 libpng12-0 libpng12-dev libreadline-dev libreadline6-dev
- libsm6 libstdc++6 libstdc++6-4.6-dev libthai-data libthai0 libtiff4
- libunistring0 libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0
- libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxrender1 libxss1 libxt6 man-db
- po-debconf r-base-core tcl8.5 tk8.5 ttf-dejavu-core ucf unzip x11-common
- xdg-utils zip zlib1g-dev
+ bsdmainutils dpatch file fontconfig fontconfig-config gettext gettext-base
+ gfortran gfortran-4.6 groff-base html2text intltool-debian libblas-dev
+ libblas3gf libbz2-dev libcairo2 libcroco3 libdatrie1 libexpat1
+ libfontconfig1 libfreetype6 libgfortran3 libglib2.0-0 libice6 libjpeg62
+ libjpeg8 libjpeg8-dev liblapack-dev liblapack3gf libmagic1 libncurses5-dev
+ libpango1.0-0 libpaper-utils libpaper1 libpcre3 libpcre3-dev libpcrecpp0
+ libpipeline1 libpixman-1-0 libpng12-0 libpng12-dev libreadline-dev
+ libreadline6-dev libsm6 libthai-data libthai0 libtiff4 libunistring0
+ libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6
+ libxext6 libxft2 libxml2 libxrender1 libxss1 libxt6 man-db po-debconf
+ r-base-core tcl8.5 tk8.5 ttf-dejavu-core ucf unzip x11-common xdg-utils zip
+ zlib1g-dev
Suggested packages:
- wamerican wordlist whois vacation devscripts gcc-4.6-locales dh-make curl
- defoma g++-4.6-multilib gcc-4.6-doc libstdc++6-4.6-dbg gcc-4.6-multilib
- libmudflap0-4.6-dev libgcc1-dbg libgomp1-dbg libquadmath-dbg libmudflap0-dbg
- gettext-doc gfortran-multilib gfortran-doc gfortran-4.6-multilib
- gfortran-4.6-doc libgfortran3-dbg groff ncurses-doc ttf-baekmuk
- ttf-arphic-gbsn00lp ttf-arphic-bsmi00lp ttf-arphic-gkai00mp
- ttf-arphic-bkai00mp libstdc++6-4.6-doc less www-browser libmail-box-perl
- r-doc-info r-doc-pdf r-mathlib r-base-html tclreadline gvfs-bin
+ wamerican wordlist whois vacation devscripts dh-make curl defoma gettext-doc
+ gfortran-multilib gfortran-doc gfortran-4.6-multilib gfortran-4.6-doc
+ libgfortran3-dbg groff ncurses-doc ttf-baekmuk ttf-arphic-gbsn00lp
+ ttf-arphic-bsmi00lp ttf-arphic-gkai00mp ttf-arphic-bkai00mp less www-browser
+ libmail-box-perl r-doc-info r-doc-pdf r-mathlib r-base-html tclreadline
+ gvfs-bin
Recommended packages:
autotools-dev patchutils autopoint libglib2.0-data shared-mime-info
x-ttcidfont-conf xml-core libmail-sendmail-perl r-recommended r-doc-html
@@ -193,7 +190,7 @@ The following NEW packages will be installed:
gettext-base gfortran gfortran-4.6 groff-base html2text intltool-debian
libblas-dev libblas3gf libbz2-dev libcairo2 libcroco3 libdatrie1 libexpat1
libfontconfig1 libfreetype6 libgfortran3 libglib2.0-0 libice6 libjpeg62
- libjpeg62-dev liblapack-dev liblapack3gf libmagic1 libncurses5-dev
+ libjpeg8 libjpeg8-dev liblapack-dev liblapack3gf libmagic1 libncurses5-dev
libpango1.0-0 libpaper-utils libpaper1 libpcre3 libpcre3-dev libpcrecpp0
libpipeline1 libpixman-1-0 libpng12-0 libpng12-dev libreadline-dev
libreadline6-dev libsm6 libthai-data libthai0 libtiff4 libunistring0
@@ -201,380 +198,346 @@ The following NEW packages will be installed:
libxext6 libxft2 libxml2 libxrender1 libxss1 libxt6 man-db po-debconf
r-base-core r-base-dev tcl8.5 tk8.5 ttf-dejavu-core ucf unzip x11-common
xdg-utils zip zlib1g-dev
-The following packages will be upgraded:
- cpp-4.6 g++-4.6 gcc-4.6 gcc-4.6-base libgcc1 libgomp1 libstdc++6
- libstdc++6-4.6-dev
-8 upgraded, 75 newly installed, 0 to remove and 7 not upgraded.
-Need to get 61.8 MB of archives.
-After this operation, 117 MB of additional disk space will be used.
-Get:1 http://ftp.de.debian.org/debian/ unstable/main libgomp1 s390 4.6.0-10 [30.3 kB]
-Get:2 http://ftp.de.debian.org/debian/ unstable/main gcc-4.6-base s390 4.6.0-10 [131 kB]
-Get:3 http://ftp.de.debian.org/debian/ unstable/main libstdc++6 s390 4.6.0-10 [368 kB]
-Get:4 http://ftp.de.debian.org/debian/ unstable/main cpp-4.6 s390 4.6.0-10 [3814 kB]
-Get:5 http://ftp.de.debian.org/debian/ unstable/main libstdc++6-4.6-dev s390 4.6.0-10 [1674 kB]
-Get:6 http://ftp.de.debian.org/debian/ unstable/main g++-4.6 s390 4.6.0-10 [5865 kB]
-Get:7 http://ftp.de.debian.org/debian/ unstable/main gcc-4.6 s390 4.6.0-10 [4174 kB]
-Get:8 http://ftp.de.debian.org/debian/ unstable/main libgcc1 s390 1:4.6.0-10 [31.1 kB]
-Get:9 http://ftp.de.debian.org/debian/ unstable/main bsdmainutils s390 8.2.2 [208 kB]
-Get:10 http://ftp.de.debian.org/debian/ unstable/main groff-base s390 1.21-5 [1158 kB]
-Get:11 http://ftp.de.debian.org/debian/ unstable/main libpipeline1 s390 1.2.0-2 [38.9 kB]
-Get:12 http://ftp.de.debian.org/debian/ unstable/main man-db s390 2.6.0.2-1 [1017 kB]
-Get:13 http://ftp.de.debian.org/debian/ unstable/main libmagic1 s390 5.04-5+b1 [243 kB]
-Get:14 http://ftp.de.debian.org/debian/ unstable/main file s390 5.04-5+b1 [50.1 kB]
-Get:15 http://ftp.de.debian.org/debian/ unstable/main gettext-base s390 0.18.1.1-3 [142 kB]
-Get:16 http://ftp.de.debian.org/debian/ unstable/main libpcre3 s390 8.12-3 [262 kB]
-Get:17 http://ftp.de.debian.org/debian/ unstable/main libxml2 s390 2.7.8.dfsg-2+b1 [873 kB]
-Get:18 http://ftp.de.debian.org/debian/ unstable/main ucf all 3.0025+nmu2 [70.6 kB]
-Get:19 http://ftp.de.debian.org/debian/ unstable/main html2text s390 1.3.2a-15 [101 kB]
-Get:20 http://ftp.de.debian.org/debian/ unstable/main libglib2.0-0 s390 2.28.6-1 [1639 kB]
-Get:21 http://ftp.de.debian.org/debian/ unstable/main libcroco3 s390 0.6.2-1 [128 kB]
-Get:22 http://ftp.de.debian.org/debian/ unstable/main libunistring0 s390 0.9.3-4 [431 kB]
-Get:23 http://ftp.de.debian.org/debian/ unstable/main gettext s390 0.18.1.1-3 [2068 kB]
-Get:24 http://ftp.de.debian.org/debian/ unstable/main intltool-debian all 0.35.0+20060710.1 [30.8 kB]
-Get:25 http://ftp.de.debian.org/debian/ unstable/main po-debconf all 1.0.16+nmu1 [223 kB]
-Get:26 http://ftp.de.debian.org/debian/ unstable/main debhelper all 8.1.6 [557 kB]
-Get:27 http://ftp.de.debian.org/debian/ unstable/main cdbs all 0.4.94 [75.5 kB]
-Get:28 http://ftp.de.debian.org/debian/ unstable/main dpatch all 2.0.31 [92.3 kB]
-Get:29 http://ftp.de.debian.org/debian/ unstable/main libexpat1 s390 2.0.1-7 [137 kB]
-Get:30 http://ftp.de.debian.org/debian/ unstable/main libfreetype6 s390 2.4.4-1 [416 kB]
-Get:31 http://ftp.de.debian.org/debian/ unstable/main ttf-dejavu-core all 2.33-1 [1550 kB]
-Get:32 http://ftp.de.debian.org/debian/ unstable/main fontconfig-config all 2.8.0-2.2 [218 kB]
-Get:33 http://ftp.de.debian.org/debian/ unstable/main libfontconfig1 s390 2.8.0-2.2 [285 kB]
-Get:34 http://ftp.de.debian.org/debian/ unstable/main fontconfig s390 2.8.0-2.2 [335 kB]
-Get:35 http://ftp.de.debian.org/debian/ unstable/main libgfortran3 s390 4.6.0-10 [296 kB]
-Get:36 http://ftp.de.debian.org/debian/ unstable/main gfortran-4.6 s390 4.6.0-10 [4508 kB]
-Get:37 http://ftp.de.debian.org/debian/ unstable/main gfortran s390 4:4.6.0-5 [1122 B]
-Get:38 http://ftp.de.debian.org/debian/ unstable/main libblas3gf s390 1.2-8 [192 kB]
-Get:39 http://ftp.de.debian.org/debian/ unstable/main libblas-dev s390 1.2-8 [206 kB]
-Get:40 http://ftp.de.debian.org/debian/ unstable/main libbz2-dev s390 1.0.5-6 [36.9 kB]
-Get:41 http://ftp.de.debian.org/debian/ unstable/main libpixman-1-0 s390 0.21.8-1 [357 kB]
-Get:42 http://ftp.de.debian.org/debian/ unstable/main libpng12-0 s390 1.2.44-2 [181 kB]
-Get:43 http://ftp.de.debian.org/debian/ unstable/main libxau6 s390 1:1.0.6-1 [16.8 kB]
-Get:44 http://ftp.de.debian.org/debian/ unstable/main libxdmcp6 s390 1:1.1.0-1 [23.1 kB]
-Get:45 http://ftp.de.debian.org/debian/ unstable/main libxcb1 s390 1.7-2 [47.0 kB]
-Get:46 http://ftp.de.debian.org/debian/ unstable/main libx11-data all 2:1.4.3-1 [186 kB]
-Get:47 http://ftp.de.debian.org/debian/ unstable/main libx11-6 s390 2:1.4.3-1 [885 kB]
-Get:48 http://ftp.de.debian.org/debian/ unstable/main libxcb-render0 s390 1.7-2 [16.7 kB]
-Get:49 http://ftp.de.debian.org/debian/ unstable/main libxcb-shm0 s390 1.7-2 [9466 B]
-Get:50 http://ftp.de.debian.org/debian/ unstable/main libxrender1 s390 1:0.9.6-1 [30.6 kB]
-Get:51 http://ftp.de.debian.org/debian/ unstable/main libcairo2 s390 1.10.2-6 [952 kB]
-Get:52 http://ftp.de.debian.org/debian/ unstable/main libdatrie1 s390 0.2.4-2 [27.9 kB]
-Get:53 http://ftp.de.debian.org/debian/ unstable/main x11-common all 1:7.6+6 [280 kB]
-Get:54 http://ftp.de.debian.org/debian/ unstable/main libice6 s390 2:1.0.7-1 [56.6 kB]
-Get:55 http://ftp.de.debian.org/debian/ unstable/main libjpeg62 s390 6b1-1 [95.2 kB]
-Get:56 http://ftp.de.debian.org/debian/ unstable/main libjpeg62-dev s390 6b1-1 [197 kB]
-Get:57 http://ftp.de.debian.org/debian/ unstable/main liblapack3gf s390 3.3.0-4 [1661 kB]
-Get:58 http://ftp.de.debian.org/debian/ unstable/main liblapack-dev s390 3.3.0-4 [1859 kB]
-Get:59 http://ftp.de.debian.org/debian/ unstable/main libncurses5-dev s390 5.9-1 [504 kB]
-Get:60 http://ftp.de.debian.org/debian/ unstable/main libthai-data all 0.1.15-1 [201 kB]
-Get:61 http://ftp.de.debian.org/debian/ unstable/main libthai0 s390 0.1.15-1 [43.5 kB]
-Get:62 http://ftp.de.debian.org/debian/ unstable/main libxft2 s390 2.2.0-2 [59.6 kB]
-Get:63 http://ftp.de.debian.org/debian/ unstable/main libpango1.0-0 s390 1.28.3-6 [443 kB]
-Get:64 http://ftp.de.debian.org/debian/ unstable/main libpaper1 s390 1.1.24+nmu1 [21.9 kB]
-Get:65 http://ftp.de.debian.org/debian/ unstable/main libpaper-utils s390 1.1.24+nmu1 [18.4 kB]
-Get:66 http://ftp.de.debian.org/debian/ unstable/main libpcrecpp0 s390 8.12-3 [113 kB]
-Get:67 http://ftp.de.debian.org/debian/ unstable/main libpcre3-dev s390 8.12-3 [308 kB]
-Get:68 http://ftp.de.debian.org/debian/ unstable/main zlib1g-dev s390 1:1.2.3.4.dfsg-3 [193 kB]
-Get:69 http://ftp.de.debian.org/debian/ unstable/main libpng12-dev s390 1.2.44-2 [271 kB]
-Get:70 http://ftp.de.debian.org/debian/ unstable/main libreadline6-dev s390 6.2-2 [257 kB]
-Get:71 http://ftp.de.debian.org/debian/ unstable/main libreadline-dev s390 6.2-2 [878 B]
-Get:72 http://ftp.de.debian.org/debian/ unstable/main libsm6 s390 2:1.2.0-1 [29.9 kB]
-Get:73 http://ftp.de.debian.org/debian/ unstable/main libtiff4 s390 3.9.5-1 [206 kB]
-Get:74 http://ftp.de.debian.org/debian/ unstable/main libxext6 s390 2:1.3.0-1 [52.2 kB]
-Get:75 http://ftp.de.debian.org/debian/ unstable/main libxss1 s390 1:1.2.1-1 [16.5 kB]
-Get:76 http://ftp.de.debian.org/debian/ unstable/main libxt6 s390 1:1.1.1-1 [205 kB]
-Get:77 http://ftp.de.debian.org/debian/ unstable/main zip s390 3.0-3 [342 kB]
-Get:78 http://ftp.de.debian.org/debian/ unstable/main unzip s390 6.0-4 [192 kB]
-Get:79 http://ftp.de.debian.org/debian/ unstable/main xdg-utils all 1.1.0~rc1-2 [70.2 kB]
-Get:80 http://ftp.de.debian.org/debian/ unstable/main tcl8.5 s390 8.5.9-2 [1632 kB]
-Get:81 http://ftp.de.debian.org/debian/ unstable/main tk8.5 s390 8.5.9-2 [1196 kB]
-Get:82 http://ftp.de.debian.org/debian/ unstable/main r-base-core s390 2.13.0-2 [14.9 MB]
-Get:83 http://ftp.de.debian.org/debian/ unstable/main r-base-dev all 2.13.0-2 [3490 B]
+0 upgraded, 76 newly installed, 0 to remove and 9 not upgraded.
+Need to get 46.3 MB of archives.
+After this operation, 118 MB of additional disk space will be used.
+Get:1 http://ftp.de.debian.org/debian/ unstable/main libpipeline1 s390 1.2.0-3 [39.0 kB]
+Get:2 http://ftp.de.debian.org/debian/ unstable/main libpcre3 s390 8.12-4 [228 kB]
+Get:3 http://ftp.de.debian.org/debian/ unstable/main libdatrie1 s390 0.2.4-3 [28.5 kB]
+Get:4 http://ftp.de.debian.org/debian/ unstable/main libexpat1 s390 2.0.1-7 [137 kB]
+Get:5 http://ftp.de.debian.org/debian/ unstable/main libfreetype6 s390 2.4.6-1 [432 kB]
+Get:6 http://ftp.de.debian.org/debian/ unstable/main ucf all 3.0025+nmu2 [70.6 kB]
+Get:7 http://ftp.de.debian.org/debian/ unstable/main ttf-dejavu-core all 2.33-1 [1550 kB]
+Get:8 http://ftp.de.debian.org/debian/ unstable/main fontconfig-config all 2.8.0-3 [221 kB]
+Get:9 http://ftp.de.debian.org/debian/ unstable/main libfontconfig1 s390 2.8.0-3 [286 kB]
+Get:10 http://ftp.de.debian.org/debian/ unstable/main libgfortran3 s390 4.6.1-6 [297 kB]
+Get:11 http://ftp.de.debian.org/debian/ unstable/main x11-common all 1:7.6+7 [275 kB]
+Get:12 http://ftp.de.debian.org/debian/ unstable/main libice6 s390 2:1.0.7-2 [57.1 kB]
+Get:13 http://ftp.de.debian.org/debian/ unstable/main libpixman-1-0 s390 0.22.2-1 [353 kB]
+Get:14 http://ftp.de.debian.org/debian/ unstable/main libpng12-0 s390 1.2.46-3 [191 kB]
+Get:15 http://ftp.de.debian.org/debian/ unstable/main libxau6 s390 1:1.0.6-3 [17.0 kB]
+Get:16 http://ftp.de.debian.org/debian/ unstable/main libxdmcp6 s390 1:1.1.0-3 [23.7 kB]
+Get:17 http://ftp.de.debian.org/debian/ unstable/main libxcb1 s390 1.7-3 [48.4 kB]
+Get:18 http://ftp.de.debian.org/debian/ unstable/main libx11-data all 2:1.4.4-1 [183 kB]
+Get:19 http://ftp.de.debian.org/debian/ unstable/main libx11-6 s390 2:1.4.4-1 [892 kB]
+Get:20 http://ftp.de.debian.org/debian/ unstable/main libxcb-render0 s390 1.7-3 [17.0 kB]
+Get:21 http://ftp.de.debian.org/debian/ unstable/main libxcb-shm0 s390 1.7-3 [9680 B]
+Get:22 http://ftp.de.debian.org/debian/ unstable/main libxrender1 s390 1:0.9.6-2 [31.2 kB]
+Get:23 http://ftp.de.debian.org/debian/ unstable/main libcairo2 s390 1.10.2-6.1 [956 kB]
+Get:24 http://ftp.de.debian.org/debian/ unstable/main libglib2.0-0 s390 2.28.6-1 [1639 kB]
+Get:25 http://ftp.de.debian.org/debian/ unstable/main libthai-data all 0.1.15-2 [201 kB]
+Get:26 http://ftp.de.debian.org/debian/ unstable/main libthai0 s390 0.1.15-2 [44.0 kB]
+Get:27 http://ftp.de.debian.org/debian/ unstable/main libxft2 s390 2.2.0-3 [60.3 kB]
+Get:28 http://ftp.de.debian.org/debian/ unstable/main fontconfig s390 2.8.0-3 [335 kB]
+Get:29 http://ftp.de.debian.org/debian/ unstable/main libpango1.0-0 s390 1.28.4-2 [447 kB]
+Get:30 http://ftp.de.debian.org/debian/ unstable/main libpcrecpp0 s390 8.12-4 [114 kB]
+Get:31 http://ftp.de.debian.org/debian/ unstable/main libsm6 s390 2:1.2.0-2 [30.3 kB]
+Get:32 http://ftp.de.debian.org/debian/ unstable/main libxext6 s390 2:1.3.0-3 [52.3 kB]
+Get:33 http://ftp.de.debian.org/debian/ unstable/main libxss1 s390 1:1.2.1-2 [16.8 kB]
+Get:34 http://ftp.de.debian.org/debian/ unstable/main libxt6 s390 1:1.1.1-2 [206 kB]
+Get:35 http://ftp.de.debian.org/debian/ unstable/main bsdmainutils s390 8.2.3 [209 kB]
+Get:36 http://ftp.de.debian.org/debian/ unstable/main groff-base s390 1.21-6 [1156 kB]
+Get:37 http://ftp.de.debian.org/debian/ unstable/main man-db s390 2.6.0.2-2 [1029 kB]
+Get:38 http://ftp.de.debian.org/debian/ unstable/main libmagic1 s390 5.04-5+b1 [243 kB]
+Get:39 http://ftp.de.debian.org/debian/ unstable/main file s390 5.04-5+b1 [50.1 kB]
+Get:40 http://ftp.de.debian.org/debian/ unstable/main gettext-base s390 0.18.1.1-4 [143 kB]
+Get:41 http://ftp.de.debian.org/debian/ unstable/main libxml2 s390 2.7.8.dfsg-4 [879 kB]
+Get:42 http://ftp.de.debian.org/debian/ unstable/main html2text s390 1.3.2a-15 [101 kB]
+Get:43 http://ftp.de.debian.org/debian/ unstable/main libcroco3 s390 0.6.2-1 [128 kB]
+Get:44 http://ftp.de.debian.org/debian/ unstable/main libunistring0 s390 0.9.3-4 [431 kB]
+Get:45 http://ftp.de.debian.org/debian/ unstable/main gettext s390 0.18.1.1-4 [2073 kB]
+Get:46 http://ftp.de.debian.org/debian/ unstable/main intltool-debian all 0.35.0+20060710.1 [30.8 kB]
+Get:47 http://ftp.de.debian.org/debian/ unstable/main po-debconf all 1.0.16+nmu1 [223 kB]
+Get:48 http://ftp.de.debian.org/debian/ unstable/main debhelper all 8.9.4 [561 kB]
+Get:49 http://ftp.de.debian.org/debian/ unstable/main cdbs all 0.4.96 [75.8 kB]
+Get:50 http://ftp.de.debian.org/debian/ unstable/main dpatch all 2.0.31 [92.3 kB]
+Get:51 http://ftp.de.debian.org/debian/ unstable/main gfortran-4.6 s390 4.6.1-6 [4513 kB]
+Get:52 http://ftp.de.debian.org/debian/ unstable/main gfortran s390 4:4.6.1-2 [1126 B]
+Get:53 http://ftp.de.debian.org/debian/ unstable/main libblas3gf s390 1.2.20110419-2 [191 kB]
+Get:54 http://ftp.de.debian.org/debian/ unstable/main libblas-dev s390 1.2.20110419-2 [203 kB]
+Get:55 http://ftp.de.debian.org/debian/ unstable/main libbz2-dev s390 1.0.5-6 [36.9 kB]
+Get:56 http://ftp.de.debian.org/debian/ unstable/main libjpeg62 s390 6b1-2 [96.1 kB]
+Get:57 http://ftp.de.debian.org/debian/ unstable/main libjpeg8 s390 8c-2 [139 kB]
+Get:58 http://ftp.de.debian.org/debian/ unstable/main libjpeg8-dev s390 8c-2 [241 kB]
+Get:59 http://ftp.de.debian.org/debian/ unstable/main liblapack3gf s390 3.3.1-1 [1720 kB]
+Get:60 http://ftp.de.debian.org/debian/ unstable/main liblapack-dev s390 3.3.1-1 [1920 kB]
+Get:61 http://ftp.de.debian.org/debian/ unstable/main libncurses5-dev s390 5.9-1 [504 kB]
+Get:62 http://ftp.de.debian.org/debian/ unstable/main libpaper1 s390 1.1.24+nmu1 [21.9 kB]
+Get:63 http://ftp.de.debian.org/debian/ unstable/main libpaper-utils s390 1.1.24+nmu1 [18.4 kB]
+Get:64 http://ftp.de.debian.org/debian/ unstable/main libpcre3-dev s390 8.12-4 [308 kB]
+Get:65 http://ftp.de.debian.org/debian/ unstable/main zlib1g-dev s390 1:1.2.3.4.dfsg-3 [193 kB]
+Get:66 http://ftp.de.debian.org/debian/ unstable/main libpng12-dev s390 1.2.46-3 [268 kB]
+Get:67 http://ftp.de.debian.org/debian/ unstable/main libreadline6-dev s390 6.2-2 [257 kB]
+Get:68 http://ftp.de.debian.org/debian/ unstable/main libreadline-dev s390 6.2-2 [878 B]
+Get:69 http://ftp.de.debian.org/debian/ unstable/main libtiff4 s390 3.9.5-1 [206 kB]
+Get:70 http://ftp.de.debian.org/debian/ unstable/main zip s390 3.0-4 [347 kB]
+Get:71 http://ftp.de.debian.org/debian/ unstable/main unzip s390 6.0-5 [195 kB]
+Get:72 http://ftp.de.debian.org/debian/ unstable/main xdg-utils all 1.1.0~rc1-2 [70.2 kB]
+Get:73 http://ftp.de.debian.org/debian/ unstable/main tcl8.5 s390 8.5.10-1 [1651 kB]
+Get:74 http://ftp.de.debian.org/debian/ unstable/main tk8.5 s390 8.5.10-1 [1198 kB]
+Get:75 http://ftp.de.debian.org/debian/ unstable/main r-base-core s390 2.13.1-1 [15.0 MB]
+Get:76 http://ftp.de.debian.org/debian/ unstable/main r-base-dev all 2.13.1-1 [3490 B]
debconf: delaying package configuration, since apt-utils is not installed
-Fetched 61.8 MB in 18s (3365 kB/s)
-(Reading database ... 10552 files and directories currently installed.)
-Preparing to replace libgomp1 4.6.0-8 (using .../libgomp1_4.6.0-10_s390.deb) ...
-Unpacking replacement libgomp1 ...
-Preparing to replace gcc-4.6-base 4.6.0-8 (using .../gcc-4.6-base_4.6.0-10_s390.deb) ...
-Unpacking replacement gcc-4.6-base ...
-Setting up gcc-4.6-base (4.6.0-10) ...
-(Reading database ... 10551 files and directories currently installed.)
-Preparing to replace libstdc++6 4.6.0-8 (using .../libstdc++6_4.6.0-10_s390.deb) ...
-Unpacking replacement libstdc++6 ...
-Setting up libstdc++6 (4.6.0-10) ...
-(Reading database ... 10551 files and directories currently installed.)
-Preparing to replace cpp-4.6 4.6.0-8 (using .../cpp-4.6_4.6.0-10_s390.deb) ...
-Unpacking replacement cpp-4.6 ...
-Preparing to replace libstdc++6-4.6-dev 4.6.0-8 (using .../libstdc++6-4.6-dev_4.6.0-10_s390.deb) ...
-Unpacking replacement libstdc++6-4.6-dev ...
-Preparing to replace g++-4.6 4.6.0-8 (using .../g++-4.6_4.6.0-10_s390.deb) ...
-Unpacking replacement g++-4.6 ...
-Preparing to replace gcc-4.6 4.6.0-8 (using .../gcc-4.6_4.6.0-10_s390.deb) ...
-Unpacking replacement gcc-4.6 ...
-Preparing to replace libgcc1 1:4.6.0-8 (using .../libgcc1_1%3a4.6.0-10_s390.deb) ...
-Unpacking replacement libgcc1 ...
-Setting up libgcc1 (1:4.6.0-10) ...
+Fetched 46.3 MB in 12s (3707 kB/s)
+Selecting previously deselected package libpipeline1.
+(Reading database ... 10583 files and directories currently installed.)
+Unpacking libpipeline1 (from .../libpipeline1_1.2.0-3_s390.deb) ...
+Selecting previously deselected package libpcre3.
+Unpacking libpcre3 (from .../libpcre3_8.12-4_s390.deb) ...
+Selecting previously deselected package libdatrie1.
+Unpacking libdatrie1 (from .../libdatrie1_0.2.4-3_s390.deb) ...
+Selecting previously deselected package libexpat1.
+Unpacking libexpat1 (from .../libexpat1_2.0.1-7_s390.deb) ...
+Selecting previously deselected package libfreetype6.
+Unpacking libfreetype6 (from .../libfreetype6_2.4.6-1_s390.deb) ...
+Selecting previously deselected package ucf.
+Unpacking ucf (from .../ucf_3.0025+nmu2_all.deb) ...
+Moving old data out of the way
+Selecting previously deselected package ttf-dejavu-core.
+Unpacking ttf-dejavu-core (from .../ttf-dejavu-core_2.33-1_all.deb) ...
+Selecting previously deselected package fontconfig-config.
+Unpacking fontconfig-config (from .../fontconfig-config_2.8.0-3_all.deb) ...
+Selecting previously deselected package libfontconfig1.
+Unpacking libfontconfig1 (from .../libfontconfig1_2.8.0-3_s390.deb) ...
+Selecting previously deselected package libgfortran3.
+Unpacking libgfortran3 (from .../libgfortran3_4.6.1-6_s390.deb) ...
+Selecting previously deselected package x11-common.
+Unpacking x11-common (from .../x11-common_1%3a7.6+7_all.deb) ...
+Selecting previously deselected package libice6.
+Unpacking libice6 (from .../libice6_2%3a1.0.7-2_s390.deb) ...
+Selecting previously deselected package libpixman-1-0.
+Unpacking libpixman-1-0 (from .../libpixman-1-0_0.22.2-1_s390.deb) ...
+Selecting previously deselected package libpng12-0.
+Unpacking libpng12-0 (from .../libpng12-0_1.2.46-3_s390.deb) ...
+Selecting previously deselected package libxau6.
+Unpacking libxau6 (from .../libxau6_1%3a1.0.6-3_s390.deb) ...
+Selecting previously deselected package libxdmcp6.
+Unpacking libxdmcp6 (from .../libxdmcp6_1%3a1.1.0-3_s390.deb) ...
+Selecting previously deselected package libxcb1.
+Unpacking libxcb1 (from .../libxcb1_1.7-3_s390.deb) ...
+Selecting previously deselected package libx11-data.
+Unpacking libx11-data (from .../libx11-data_2%3a1.4.4-1_all.deb) ...
+Selecting previously deselected package libx11-6.
+Unpacking libx11-6 (from .../libx11-6_2%3a1.4.4-1_s390.deb) ...
+Selecting previously deselected package libxcb-render0.
+Unpacking libxcb-render0 (from .../libxcb-render0_1.7-3_s390.deb) ...
+Selecting previously deselected package libxcb-shm0.
+Unpacking libxcb-shm0 (from .../libxcb-shm0_1.7-3_s390.deb) ...
+Selecting previously deselected package libxrender1.
+Unpacking libxrender1 (from .../libxrender1_1%3a0.9.6-2_s390.deb) ...
+Selecting previously deselected package libcairo2.
+Unpacking libcairo2 (from .../libcairo2_1.10.2-6.1_s390.deb) ...
+Selecting previously deselected package libglib2.0-0.
+Unpacking libglib2.0-0 (from .../libglib2.0-0_2.28.6-1_s390.deb) ...
+Selecting previously deselected package libthai-data.
+Unpacking libthai-data (from .../libthai-data_0.1.15-2_all.deb) ...
+Selecting previously deselected package libthai0.
+Unpacking libthai0 (from .../libthai0_0.1.15-2_s390.deb) ...
+Selecting previously deselected package libxft2.
+Unpacking libxft2 (from .../libxft2_2.2.0-3_s390.deb) ...
+Selecting previously deselected package fontconfig.
+Unpacking fontconfig (from .../fontconfig_2.8.0-3_s390.deb) ...
+Selecting previously deselected package libpango1.0-0.
+Unpacking libpango1.0-0 (from .../libpango1.0-0_1.28.4-2_s390.deb) ...
+Selecting previously deselected package libpcrecpp0.
+Unpacking libpcrecpp0 (from .../libpcrecpp0_8.12-4_s390.deb) ...
+Selecting previously deselected package libsm6.
+Unpacking libsm6 (from .../libsm6_2%3a1.2.0-2_s390.deb) ...
+Selecting previously deselected package libxext6.
+Unpacking libxext6 (from .../libxext6_2%3a1.3.0-3_s390.deb) ...
+Selecting previously deselected package libxss1.
+Unpacking libxss1 (from .../libxss1_1%3a1.2.1-2_s390.deb) ...
+Selecting previously deselected package libxt6.
+Unpacking libxt6 (from .../libxt6_1%3a1.1.1-2_s390.deb) ...
Selecting previously deselected package bsdmainutils.
-(Reading database ... 10551 files and directories currently installed.)
-Unpacking bsdmainutils (from .../bsdmainutils_8.2.2_s390.deb) ...
+Unpacking bsdmainutils (from .../bsdmainutils_8.2.3_s390.deb) ...
Selecting previously deselected package groff-base.
-Unpacking groff-base (from .../groff-base_1.21-5_s390.deb) ...
-Selecting previously deselected package libpipeline1.
-Unpacking libpipeline1 (from .../libpipeline1_1.2.0-2_s390.deb) ...
+Unpacking groff-base (from .../groff-base_1.21-6_s390.deb) ...
Selecting previously deselected package man-db.
-Unpacking man-db (from .../man-db_2.6.0.2-1_s390.deb) ...
+Unpacking man-db (from .../man-db_2.6.0.2-2_s390.deb) ...
Selecting previously deselected package libmagic1.
Unpacking libmagic1 (from .../libmagic1_5.04-5+b1_s390.deb) ...
Selecting previously deselected package file.
Unpacking file (from .../file_5.04-5+b1_s390.deb) ...
Selecting previously deselected package gettext-base.
-Unpacking gettext-base (from .../gettext-base_0.18.1.1-3_s390.deb) ...
-Selecting previously deselected package libpcre3.
-Unpacking libpcre3 (from .../libpcre3_8.12-3_s390.deb) ...
+Unpacking gettext-base (from .../gettext-base_0.18.1.1-4_s390.deb) ...
Selecting previously deselected package libxml2.
-Unpacking libxml2 (from .../libxml2_2.7.8.dfsg-2+b1_s390.deb) ...
-Selecting previously deselected package ucf.
-Unpacking ucf (from .../ucf_3.0025+nmu2_all.deb) ...
-Moving old data out of the way
+Unpacking libxml2 (from .../libxml2_2.7.8.dfsg-4_s390.deb) ...
Selecting previously deselected package html2text.
Unpacking html2text (from .../html2text_1.3.2a-15_s390.deb) ...
-Selecting previously deselected package libglib2.0-0.
-Unpacking libglib2.0-0 (from .../libglib2.0-0_2.28.6-1_s390.deb) ...
Selecting previously deselected package libcroco3.
Unpacking libcroco3 (from .../libcroco3_0.6.2-1_s390.deb) ...
Selecting previously deselected package libunistring0.
Unpacking libunistring0 (from .../libunistring0_0.9.3-4_s390.deb) ...
Selecting previously deselected package gettext.
-Unpacking gettext (from .../gettext_0.18.1.1-3_s390.deb) ...
+Unpacking gettext (from .../gettext_0.18.1.1-4_s390.deb) ...
Selecting previously deselected package intltool-debian.
Unpacking intltool-debian (from .../intltool-debian_0.35.0+20060710.1_all.deb) ...
Selecting previously deselected package po-debconf.
Unpacking po-debconf (from .../po-debconf_1.0.16+nmu1_all.deb) ...
Selecting previously deselected package debhelper.
-Unpacking debhelper (from .../debhelper_8.1.6_all.deb) ...
+Unpacking debhelper (from .../debhelper_8.9.4_all.deb) ...
Selecting previously deselected package cdbs.
-Unpacking cdbs (from .../archives/cdbs_0.4.94_all.deb) ...
+Unpacking cdbs (from .../archives/cdbs_0.4.96_all.deb) ...
Selecting previously deselected package dpatch.
Unpacking dpatch (from .../archives/dpatch_2.0.31_all.deb) ...
-Selecting previously deselected package libexpat1.
-Unpacking libexpat1 (from .../libexpat1_2.0.1-7_s390.deb) ...
-Selecting previously deselected package libfreetype6.
-Unpacking libfreetype6 (from .../libfreetype6_2.4.4-1_s390.deb) ...
-Selecting previously deselected package ttf-dejavu-core.
-Unpacking ttf-dejavu-core (from .../ttf-dejavu-core_2.33-1_all.deb) ...
-Selecting previously deselected package fontconfig-config.
-Unpacking fontconfig-config (from .../fontconfig-config_2.8.0-2.2_all.deb) ...
-Selecting previously deselected package libfontconfig1.
-Unpacking libfontconfig1 (from .../libfontconfig1_2.8.0-2.2_s390.deb) ...
-Selecting previously deselected package fontconfig.
-Unpacking fontconfig (from .../fontconfig_2.8.0-2.2_s390.deb) ...
-Selecting previously deselected package libgfortran3.
-Unpacking libgfortran3 (from .../libgfortran3_4.6.0-10_s390.deb) ...
Selecting previously deselected package gfortran-4.6.
-Unpacking gfortran-4.6 (from .../gfortran-4.6_4.6.0-10_s390.deb) ...
+Unpacking gfortran-4.6 (from .../gfortran-4.6_4.6.1-6_s390.deb) ...
Selecting previously deselected package gfortran.
-Unpacking gfortran (from .../gfortran_4%3a4.6.0-5_s390.deb) ...
+Unpacking gfortran (from .../gfortran_4%3a4.6.1-2_s390.deb) ...
Selecting previously deselected package libblas3gf.
-Unpacking libblas3gf (from .../libblas3gf_1.2-8_s390.deb) ...
+Unpacking libblas3gf (from .../libblas3gf_1.2.20110419-2_s390.deb) ...
Selecting previously deselected package libblas-dev.
-Unpacking libblas-dev (from .../libblas-dev_1.2-8_s390.deb) ...
+Unpacking libblas-dev (from .../libblas-dev_1.2.20110419-2_s390.deb) ...
Selecting previously deselected package libbz2-dev.
Unpacking libbz2-dev (from .../libbz2-dev_1.0.5-6_s390.deb) ...
-Selecting previously deselected package libpixman-1-0.
-Unpacking libpixman-1-0 (from .../libpixman-1-0_0.21.8-1_s390.deb) ...
-Selecting previously deselected package libpng12-0.
-Unpacking libpng12-0 (from .../libpng12-0_1.2.44-2_s390.deb) ...
-Selecting previously deselected package libxau6.
-Unpacking libxau6 (from .../libxau6_1%3a1.0.6-1_s390.deb) ...
-Selecting previously deselected package libxdmcp6.
-Unpacking libxdmcp6 (from .../libxdmcp6_1%3a1.1.0-1_s390.deb) ...
-Selecting previously deselected package libxcb1.
-Unpacking libxcb1 (from .../libxcb1_1.7-2_s390.deb) ...
-Selecting previously deselected package libx11-data.
-Unpacking libx11-data (from .../libx11-data_2%3a1.4.3-1_all.deb) ...
-Selecting previously deselected package libx11-6.
-Unpacking libx11-6 (from .../libx11-6_2%3a1.4.3-1_s390.deb) ...
-Selecting previously deselected package libxcb-render0.
-Unpacking libxcb-render0 (from .../libxcb-render0_1.7-2_s390.deb) ...
-Selecting previously deselected package libxcb-shm0.
-Unpacking libxcb-shm0 (from .../libxcb-shm0_1.7-2_s390.deb) ...
-Selecting previously deselected package libxrender1.
-Unpacking libxrender1 (from .../libxrender1_1%3a0.9.6-1_s390.deb) ...
-Selecting previously deselected package libcairo2.
-Unpacking libcairo2 (from .../libcairo2_1.10.2-6_s390.deb) ...
-Selecting previously deselected package libdatrie1.
-Unpacking libdatrie1 (from .../libdatrie1_0.2.4-2_s390.deb) ...
-Selecting previously deselected package x11-common.
-Unpacking x11-common (from .../x11-common_1%3a7.6+6_all.deb) ...
-Selecting previously deselected package libice6.
-Unpacking libice6 (from .../libice6_2%3a1.0.7-1_s390.deb) ...
Selecting previously deselected package libjpeg62.
-Unpacking libjpeg62 (from .../libjpeg62_6b1-1_s390.deb) ...
-Selecting previously deselected package libjpeg62-dev.
-Unpacking libjpeg62-dev (from .../libjpeg62-dev_6b1-1_s390.deb) ...
+Unpacking libjpeg62 (from .../libjpeg62_6b1-2_s390.deb) ...
+Selecting previously deselected package libjpeg8.
+Unpacking libjpeg8 (from .../libjpeg8_8c-2_s390.deb) ...
+Selecting previously deselected package libjpeg8-dev.
+Unpacking libjpeg8-dev (from .../libjpeg8-dev_8c-2_s390.deb) ...
Selecting previously deselected package liblapack3gf.
-Unpacking liblapack3gf (from .../liblapack3gf_3.3.0-4_s390.deb) ...
+Unpacking liblapack3gf (from .../liblapack3gf_3.3.1-1_s390.deb) ...
Selecting previously deselected package liblapack-dev.
-Unpacking liblapack-dev (from .../liblapack-dev_3.3.0-4_s390.deb) ...
+Unpacking liblapack-dev (from .../liblapack-dev_3.3.1-1_s390.deb) ...
Selecting previously deselected package libncurses5-dev.
Unpacking libncurses5-dev (from .../libncurses5-dev_5.9-1_s390.deb) ...
-Selecting previously deselected package libthai-data.
-Unpacking libthai-data (from .../libthai-data_0.1.15-1_all.deb) ...
-Selecting previously deselected package libthai0.
-Unpacking libthai0 (from .../libthai0_0.1.15-1_s390.deb) ...
-Selecting previously deselected package libxft2.
-Unpacking libxft2 (from .../libxft2_2.2.0-2_s390.deb) ...
-Selecting previously deselected package libpango1.0-0.
-Unpacking libpango1.0-0 (from .../libpango1.0-0_1.28.3-6_s390.deb) ...
Selecting previously deselected package libpaper1.
Unpacking libpaper1 (from .../libpaper1_1.1.24+nmu1_s390.deb) ...
Selecting previously deselected package libpaper-utils.
Unpacking libpaper-utils (from .../libpaper-utils_1.1.24+nmu1_s390.deb) ...
-Selecting previously deselected package libpcrecpp0.
-Unpacking libpcrecpp0 (from .../libpcrecpp0_8.12-3_s390.deb) ...
Selecting previously deselected package libpcre3-dev.
-Unpacking libpcre3-dev (from .../libpcre3-dev_8.12-3_s390.deb) ...
+Unpacking libpcre3-dev (from .../libpcre3-dev_8.12-4_s390.deb) ...
Selecting previously deselected package zlib1g-dev.
Unpacking zlib1g-dev (from .../zlib1g-dev_1%3a1.2.3.4.dfsg-3_s390.deb) ...
Selecting previously deselected package libpng12-dev.
-Unpacking libpng12-dev (from .../libpng12-dev_1.2.44-2_s390.deb) ...
+Unpacking libpng12-dev (from .../libpng12-dev_1.2.46-3_s390.deb) ...
Selecting previously deselected package libreadline6-dev.
Unpacking libreadline6-dev (from .../libreadline6-dev_6.2-2_s390.deb) ...
Selecting previously deselected package libreadline-dev.
Unpacking libreadline-dev (from .../libreadline-dev_6.2-2_s390.deb) ...
-Selecting previously deselected package libsm6.
-Unpacking libsm6 (from .../libsm6_2%3a1.2.0-1_s390.deb) ...
Selecting previously deselected package libtiff4.
Unpacking libtiff4 (from .../libtiff4_3.9.5-1_s390.deb) ...
-Selecting previously deselected package libxext6.
-Unpacking libxext6 (from .../libxext6_2%3a1.3.0-1_s390.deb) ...
-Selecting previously deselected package libxss1.
-Unpacking libxss1 (from .../libxss1_1%3a1.2.1-1_s390.deb) ...
-Selecting previously deselected package libxt6.
-Unpacking libxt6 (from .../libxt6_1%3a1.1.1-1_s390.deb) ...
Selecting previously deselected package zip.
-Unpacking zip (from .../archives/zip_3.0-3_s390.deb) ...
+Unpacking zip (from .../archives/zip_3.0-4_s390.deb) ...
Selecting previously deselected package unzip.
-Unpacking unzip (from .../archives/unzip_6.0-4_s390.deb) ...
+Unpacking unzip (from .../archives/unzip_6.0-5_s390.deb) ...
Selecting previously deselected package xdg-utils.
Unpacking xdg-utils (from .../xdg-utils_1.1.0~rc1-2_all.deb) ...
Selecting previously deselected package tcl8.5.
-Unpacking tcl8.5 (from .../tcl8.5_8.5.9-2_s390.deb) ...
+Unpacking tcl8.5 (from .../tcl8.5_8.5.10-1_s390.deb) ...
Selecting previously deselected package tk8.5.
-Unpacking tk8.5 (from .../tk8.5_8.5.9-2_s390.deb) ...
+Unpacking tk8.5 (from .../tk8.5_8.5.10-1_s390.deb) ...
Selecting previously deselected package r-base-core.
-Unpacking r-base-core (from .../r-base-core_2.13.0-2_s390.deb) ...
+Unpacking r-base-core (from .../r-base-core_2.13.1-1_s390.deb) ...
Selecting previously deselected package r-base-dev.
-Unpacking r-base-dev (from .../r-base-dev_2.13.0-2_all.deb) ...
-Setting up libgomp1 (4.6.0-10) ...
-Setting up cpp-4.6 (4.6.0-10) ...
-Setting up gcc-4.6 (4.6.0-10) ...
-Setting up bsdmainutils (8.2.2) ...
+Unpacking r-base-dev (from .../r-base-dev_2.13.1-1_all.deb) ...
+Setting up libpipeline1 (1.2.0-3) ...
+Setting up libpcre3 (8.12-4) ...
+Setting up libdatrie1 (0.2.4-3) ...
+Setting up libexpat1 (2.0.1-7) ...
+Setting up libfreetype6 (2.4.6-1) ...
+Setting up ucf (3.0025+nmu2) ...
+Setting up ttf-dejavu-core (2.33-1) ...
+Setting up fontconfig-config (2.8.0-3) ...
+Setting up libfontconfig1 (2.8.0-3) ...
+Setting up libgfortran3 (4.6.1-6) ...
+Setting up x11-common (1:7.6+7) ...
+All runlevel operations denied by policy
+invoke-rc.d: policy-rc.d denied execution of start.
+Setting up libice6 (2:1.0.7-2) ...
+Setting up libpixman-1-0 (0.22.2-1) ...
+Setting up libpng12-0 (1.2.46-3) ...
+Setting up libxau6 (1:1.0.6-3) ...
+Setting up libxdmcp6 (1:1.1.0-3) ...
+Setting up libxcb1 (1.7-3) ...
+Setting up libx11-data (2:1.4.4-1) ...
+Setting up libx11-6 (2:1.4.4-1) ...
+Setting up libxcb-render0 (1.7-3) ...
+Setting up libxcb-shm0 (1.7-3) ...
+Setting up libxrender1 (1:0.9.6-2) ...
+Setting up libcairo2 (1.10.2-6.1) ...
+Setting up libglib2.0-0 (2.28.6-1) ...
+No schema files found: doing nothing.
+Setting up libthai-data (0.1.15-2) ...
+Setting up libthai0 (0.1.15-2) ...
+Setting up libxft2 (2.2.0-3) ...
+Setting up fontconfig (2.8.0-3) ...
+Cleaning up old fontconfig caches... done.
+Regenerating fonts cache... done.
+Setting up libpango1.0-0 (1.28.4-2) ...
+Setting up libpcrecpp0 (8.12-4) ...
+Setting up libsm6 (2:1.2.0-2) ...
+Setting up libxext6 (2:1.3.0-3) ...
+Setting up libxss1 (1:1.2.1-2) ...
+Setting up libxt6 (1:1.1.1-2) ...
+Setting up bsdmainutils (8.2.3) ...
update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode.
update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode.
-Setting up groff-base (1.21-5) ...
-Setting up libpipeline1 (1.2.0-2) ...
-Setting up man-db (2.6.0.2-1) ...
+Setting up groff-base (1.21-6) ...
+Setting up man-db (2.6.0.2-2) ...
Building database of manual pages ...
Setting up libmagic1 (5.04-5+b1) ...
Setting up file (5.04-5+b1) ...
-Setting up gettext-base (0.18.1.1-3) ...
-Setting up libpcre3 (8.12-3) ...
-Setting up libxml2 (2.7.8.dfsg-2+b1) ...
-Setting up ucf (3.0025+nmu2) ...
+Setting up gettext-base (0.18.1.1-4) ...
+Setting up libxml2 (2.7.8.dfsg-4) ...
Setting up html2text (1.3.2a-15) ...
-Setting up libglib2.0-0 (2.28.6-1) ...
-No schema files found: doing nothing.
Setting up libcroco3 (0.6.2-1) ...
Setting up libunistring0 (0.9.3-4) ...
-Setting up gettext (0.18.1.1-3) ...
+Setting up gettext (0.18.1.1-4) ...
Setting up intltool-debian (0.35.0+20060710.1) ...
Setting up po-debconf (1.0.16+nmu1) ...
-Setting up debhelper (8.1.6) ...
-Setting up cdbs (0.4.94) ...
+Setting up debhelper (8.9.4) ...
+Setting up cdbs (0.4.96) ...
Setting up dpatch (2.0.31) ...
-Setting up libexpat1 (2.0.1-7) ...
-Setting up libfreetype6 (2.4.4-1) ...
-Setting up ttf-dejavu-core (2.33-1) ...
-Setting up fontconfig-config (2.8.0-2.2) ...
-Setting up libfontconfig1 (2.8.0-2.2) ...
-Setting up fontconfig (2.8.0-2.2) ...
-Cleaning up old fontconfig caches... done.
-Regenerating fonts cache... done.
-Setting up libgfortran3 (4.6.0-10) ...
-Setting up gfortran-4.6 (4.6.0-10) ...
-Setting up gfortran (4:4.6.0-5) ...
+Setting up gfortran-4.6 (4.6.1-6) ...
+Setting up gfortran (4:4.6.1-2) ...
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode.
-Setting up libblas3gf (1.2-8) ...
+Setting up libblas3gf (1.2.20110419-2) ...
update-alternatives: using /usr/lib/libblas/libblas.so.3gf to provide /usr/lib/libblas.so.3gf (libblas.so.3gf) in auto mode.
-Setting up libblas-dev (1.2-8) ...
+Setting up libblas-dev (1.2.20110419-2) ...
update-alternatives: using /usr/lib/libblas/libblas.so to provide /usr/lib/libblas.so (libblas.so) in auto mode.
Setting up libbz2-dev (1.0.5-6) ...
-Setting up libpixman-1-0 (0.21.8-1) ...
-Setting up libpng12-0 (1.2.44-2) ...
-Setting up libxau6 (1:1.0.6-1) ...
-Setting up libxdmcp6 (1:1.1.0-1) ...
-Setting up libxcb1 (1.7-2) ...
-Setting up libx11-data (2:1.4.3-1) ...
-Setting up libx11-6 (2:1.4.3-1) ...
-Setting up libxcb-render0 (1.7-2) ...
-Setting up libxcb-shm0 (1.7-2) ...
-Setting up libxrender1 (1:0.9.6-1) ...
-Setting up libcairo2 (1.10.2-6) ...
-Setting up libdatrie1 (0.2.4-2) ...
-Setting up x11-common (1:7.6+6) ...
-All runlevel operations denied by policy
-invoke-rc.d: policy-rc.d denied execution of start.
-Setting up libice6 (2:1.0.7-1) ...
-Setting up libjpeg62 (6b1-1) ...
-Setting up libjpeg62-dev (6b1-1) ...
-Setting up liblapack3gf (3.3.0-4) ...
+Setting up libjpeg62 (6b1-2) ...
+Setting up libjpeg8 (8c-2) ...
+Setting up libjpeg8-dev (8c-2) ...
+Setting up liblapack3gf (3.3.1-1) ...
update-alternatives: using /usr/lib/lapack/liblapack.so.3gf to provide /usr/lib/liblapack.so.3gf (liblapack.so.3gf) in auto mode.
-Setting up liblapack-dev (3.3.0-4) ...
+Setting up liblapack-dev (3.3.1-1) ...
update-alternatives: using /usr/lib/lapack/liblapack.so to provide /usr/lib/liblapack.so (liblapack.so) in auto mode.
Setting up libncurses5-dev (5.9-1) ...
-Setting up libthai-data (0.1.15-1) ...
-Setting up libthai0 (0.1.15-1) ...
-Setting up libxft2 (2.2.0-2) ...
-Setting up libpango1.0-0 (1.28.3-6) ...
Setting up libpaper1 (1.1.24+nmu1) ...
Creating config file /etc/papersize with new version
Setting up libpaper-utils (1.1.24+nmu1) ...
-Setting up libpcrecpp0 (8.12-3) ...
-Setting up libpcre3-dev (8.12-3) ...
+Setting up libpcre3-dev (8.12-4) ...
Setting up zlib1g-dev (1:1.2.3.4.dfsg-3) ...
-Setting up libpng12-dev (1.2.44-2) ...
+Setting up libpng12-dev (1.2.46-3) ...
Setting up libreadline6-dev (6.2-2) ...
Setting up libreadline-dev (6.2-2) ...
-Setting up libsm6 (2:1.2.0-1) ...
Setting up libtiff4 (3.9.5-1) ...
-Setting up libxext6 (2:1.3.0-1) ...
-Setting up libxss1 (1:1.2.1-1) ...
-Setting up libxt6 (1:1.1.1-1) ...
-Setting up zip (3.0-3) ...
-Setting up unzip (6.0-4) ...
+Setting up zip (3.0-4) ...
+Setting up unzip (6.0-5) ...
Setting up xdg-utils (1.1.0~rc1-2) ...
-Setting up tcl8.5 (8.5.9-2) ...
+Setting up tcl8.5 (8.5.10-1) ...
update-alternatives: using /usr/bin/tclsh8.5 to provide /usr/bin/tclsh (tclsh) in auto mode.
-Setting up tk8.5 (8.5.9-2) ...
+Setting up tk8.5 (8.5.10-1) ...
update-alternatives: using /usr/bin/wish8.5 to provide /usr/bin/wish (wish) in auto mode.
-Setting up r-base-core (2.13.0-2) ...
+Setting up r-base-core (2.13.1-1) ...
Setting R_PAPERSIZE_USER default to 'a4'
Creating config file /etc/R/Renviron with new version
-Setting up r-base-dev (2.13.0-2) ...
-Setting up libstdc++6-4.6-dev (4.6.0-10) ...
-Setting up g++-4.6 (4.6.0-10) ...
+Setting up r-base-dev (2.13.1-1) ...
Removing negative dependencies:
Reading package lists...
Building dependency tree...
Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 7 not upgraded.
+0 upgraded, 0 newly installed, 0 to remove and 9 not upgraded.
Checking correctness of dependencies...
Kernel: Linux 2.6.32-5-s390x s390 (s390x)
-Toolchain package versions: binutils_2.21.51.20110421-6 dpkg-dev_1.16.0.3 g++-4.6_4.6.0-10 gcc-4.6_4.6.0-10 libc6-dev_2.13-4 libstdc++6_4.6.0-10 libstdc++6-4.6-dev_4.6.0-10 linux-libc-dev_2.6.39-1
-Package versions: apt_0.8.14.1 base-files_6.3 base-passwd_3.5.22 bash_4.1-3 binutils_2.21.51.20110421-6 bsdmainutils_8.2.2 bsdutils_1:2.17.2-9.1 build-essential_11.5 bzip2_1.0.5-6 cdbs_0.4.94 coreutils_8.5-1 cpp_4:4.6.0-5 cpp-4.6_4.6.0-10 dash_0.5.5.1-7.4 debconf_1.5.39 debconf-english_1.5.38 debfoster_2.7-1.1 debhelper_8.1.6 debian-archive-keyring_2010.08.28 debianutils_4 diffutils_1:3.0-1 dpatch_2.0.31 dpkg_1.16.0.3 dpkg-dev_1.16.0.3 e2fslibs_1.41.12-4 e2fsprogs_1.41.12-4 fakeroot_1.15.1-1 file_5.04-5+b1 findutils_4.4.2-1+b1 fontconfig_2.8.0-2.2 fontconfig-config_2.8.0-2.2 g++_4:4.6.0-5 g++-4.6_4.6.0-10 gcc_4:4.6.0-5 gcc-4.4-base_4.4.6-3 gcc-4.5-base_4.5.3-1 gcc-4.6_4.6.0-10 gcc-4.6-base_4.6.0-10 gettext_0.18.1.1-3 gettext-base_0.18.1.1-3 gfortran_4:4.6.0-5 gfortran-4.6_4.6.0-10 gnupg_1.4.11-3 gpgv_1.4.11-3 grep_2.6.3-3 groff-base_1.21-5 gzip_1.3.12-9 hostname_3.06 html2text_1.3.2a-15 initscripts_2.88dsf-13.7 insserv_1.14.0-2.1 intltool-debian_0.35.0+20060710.1 libacl1_2.2.49-4 libattr1_1:2.4.44-2 libblas-dev_1.2-8 libblas3gf_1.2-8 libblkid1_2.17.2-9.1 libbz2-1.0_1.0.5-6 libbz2-dev_1.0.5-6 libc-bin_2.13-4 libc-dev-bin_2.13-4 libc6_2.13-4 libc6-dev_2.13-4 libcairo2_1.10.2-6 libcloog-ppl0_0.15.9-3 libcomerr2_1.41.12-4 libcroco3_0.6.2-1 libdatrie1_0.2.4-2 libdb5.1_5.1.25-10 libdpkg-perl_1.16.0.3 libexpat1_2.0.1-7 libfontconfig1_2.8.0-2.2 libfreetype6_2.4.4-1 libgc1c2_1:7.1-7 libgcc1_1:4.6.0-10 libgdbm3_1.8.3-9 libgfortran3_4.6.0-10 libglib2.0-0_2.28.6-1 libgmp10_2:5.0.1+dfsg-7 libgmpxx4ldbl_2:5.0.1+dfsg-7 libgomp1_4.6.0-10 libice6_2:1.0.7-1 libjpeg62_6b1-1 libjpeg62-dev_6b1-1 liblapack-dev_3.3.0-4 liblapack3gf_3.3.0-4 liblzma2_5.0.0-2 libmagic1_5.04-5+b1 libmpc2_0.9-3 libmpfr4_3.0.1-3 libncurses5_5.9-1 libncurses5-dev_5.9-1 libpam-modules_1.1.2-3 libpam-runtime_1.1.2-3 libpam0g_1.1.2-3 libpango1.0-0_1.28.3-6 libpaper-utils_1.1.24+nmu1 libpaper1_1.1.24+nmu1 libpcre3_8.12-3 libpcre3-dev_8.12-3 libpcrecpp0_8.12-3 libpipeline1_1.2.0-2 libpixman-1-0_0.21.8-1 libpng12-0_1.2.44-2 libpng12-dev_1.2.44-2 libppl-c4_0.11.2-3 libppl9_0.11.2-3 libpwl5_0.11.2-3 libreadline-dev_6.2-2 libreadline6_6.2-2 libreadline6-dev_6.2-2 libselinux1_2.0.98-1+b1 libsepol1_2.0.42-1 libslang2_2.2.4-2 libsm6_2:1.2.0-1 libss2_1.41.12-4 libstdc++6_4.6.0-10 libstdc++6-4.6-dev_4.6.0-10 libthai-data_0.1.15-1 libthai0_0.1.15-1 libtiff4_3.9.5-1 libtimedate-perl_1.2000-1 libunistring0_0.9.3-4 libusb-0.1-4_2:0.1.12-17 libuuid1_2.17.2-9.1 libx11-6_2:1.4.3-1 libx11-data_2:1.4.3-1 libxau6_1:1.0.6-1 libxcb-render0_1.7-2 libxcb-shm0_1.7-2 libxcb1_1.7-2 libxdmcp6_1:1.1.0-1 libxext6_2:1.3.0-1 libxft2_2.2.0-2 libxml2_2.7.8.dfsg-2+b1 libxrender1_1:0.9.6-1 libxss1_1:1.2.1-1 libxt6_1:1.1.1-1 linux-libc-dev_2.6.39-1 login_1:4.1.4.2+svn3283-3 lsb-base_3.2-27 make_3.81-8.1 man-db_2.6.0.2-1 mawk_1.3.3-15 mount_2.17.2-9.1 ncurses-base_5.9-1 ncurses-bin_5.9-1 passwd_1:4.1.4.2+svn3283-3 patch_2.6.1-2 perl_5.12.3-7 perl-base_5.12.3-7 perl-modules_5.12.3-7 po-debconf_1.0.16+nmu1 r-base-core_2.13.0-2 r-base-dev_2.13.0-2 readline-common_6.2-2 sed_4.2.1-9 sensible-utils_0.0.6 sudo_1.7.4p6-1 sysv-rc_2.88dsf-13.7 sysvinit_2.88dsf-13.7 sysvinit-utils_2.88dsf-13.7 tar_1.25-3 tcl8.5_8.5.9-2 tk8.5_8.5.9-2 ttf-dejavu-core_2.33-1 tzdata_2011g-1 ucf_3.0025+nmu2 unzip_6.0-4 util-linux_2.17.2-9.1 x11-common_1:7.6+6 xdg-utils_1.1.0~rc1-2 xz-utils_5.0.0-2 zip_3.0-3 zlib1g_1:1.2.3.4.dfsg-3 zlib1g-dev_1:1.2.3.4.dfsg-3
+Toolchain package versions: binutils_2.21.53.20110805-1 dpkg-dev_1.16.0.3 g++-4.6_4.6.1-6 gcc-4.6_4.6.1-6 libc6-dev_2.13-15 libstdc++6_4.6.1-6 libstdc++6-4.6-dev_4.6.1-6 linux-libc-dev_3.0.0-1
+Package versions: apt_0.8.15.5 base-files_6.5 base-passwd_3.5.23 bash_4.1-3 binutils_2.21.53.20110805-1 bsdmainutils_8.2.3 bsdutils_1:2.19.1-5 build-essential_11.5 bzip2_1.0.5-6 cdbs_0.4.96 coreutils_8.5-1 cpp_4:4.6.1-2 cpp-4.6_4.6.1-6 dash_0.5.5.1-7.4 debconf_1.5.41 debconf-english_1.5.38 debfoster_2.7-1.1 debhelper_8.9.4 debian-archive-keyring_2010.08.28 debianutils_4.0.2 diffutils_1:3.0-1 dpatch_2.0.31 dpkg_1.16.0.3 dpkg-dev_1.16.0.3 e2fslibs_1.42~WIP-2011-07-02-1 e2fsprogs_1.42~WIP-2011-07-02-1 fakeroot_1.16-1 file_5.04-5+b1 findutils_4.4.2-1+b1 fontconfig_2.8.0-3 fontconfig-config_2.8.0-3 g++_4:4.6.1-2 g++-4.6_4.6.1-6 gcc_4:4.6.1-2 gcc-4.4-base_4.4.6-7 gcc-4.5-base_4.5.3-5 gcc-4.6_4.6.1-6 gcc-4.6-base_4.6.1-6 gettext_0.18.1.1-4 gettext-base_0.18.1.1-4 gfortran_4:4.6.1-2 gfortran-4.6_4.6.1-6 gnupg_1.4.11-3 gpgv_1.4.11-3 grep_2.9-1 groff-base_1.21-6 gzip_1.4-1 hostname_3.06 html2text_1.3.2a-15 initscripts_2.88dsf-13.11 insserv_1.14.0-2.1 intltool-debian_0.35.0+20060710.1 libacl1_2.2.51-3 libattr1_1:2.4.46-3 libblas-dev_1.2.20110419-2 libblas3gf_1.2.20110419-2 libblkid1_2.19.1-5 libbz2-1.0_1.0.5-6 libbz2-dev_1.0.5-6 libc-bin_2.13-15 libc-dev-bin_2.13-15 libc6_2.13-15 libc6-dev_2.13-15 libcairo2_1.10.2-6.1 libcloog-ppl0_0.15.9-3 libcomerr2_1.42~WIP-2011-07-02-1 libcroco3_0.6.2-1 libdatrie1_0.2.4-3 libdb5.1_5.1.25-11 libdpkg-perl_1.16.0.3 libexpat1_2.0.1-7 libfontconfig1_2.8.0-3 libfreetype6_2.4.6-1 libgc1c2_1:7.1-8 libgcc1_1:4.6.1-6 libgdbm3_1.8.3-10 libgfortran3_4.6.1-6 libglib2.0-0_2.28.6-1 libgmp10_2:5.0.1+dfsg-7 libgmpxx4ldbl_2:5.0.1+dfsg-7 libgomp1_4.6.1-6 libice6_2:1.0.7-2 libjpeg62_6b1-2 libjpeg8_8c-2 libjpeg8-dev_8c-2 liblapack-dev_3.3.1-1 liblapack3gf_3.3.1-1 liblzma2_5.0.0-2 libmagic1_5.04-5+b1 libmount1_2.19.1-5 libmpc2_0.9-3 libmpfr4_3.0.1-5 libncurses5_5.9-1 libncurses5-dev_5.9-1 libpam-modules_1.1.3-2 libpam-modules-bin_1.1.3-2 libpam-runtime_1.1.3-2 libpam0g_1.1.3-2 libpango1.0-0_1.28.4-2 libpaper-utils_1.1.24+nmu1 libpaper1_1.1.24+nmu1 libpcre3_8.12-4 libpcre3-dev_8.12-4 libpcrecpp0_8.12-4 libpipeline1_1.2.0-3 libpixman-1-0_0.22.2-1 libpng12-0_1.2.46-3 libpng12-dev_1.2.46-3 libppl-c4_0.11.2-4 libppl9_0.11.2-4 libpwl5_0.11.2-4 libreadline-dev_6.2-2 libreadline6_6.2-2 libreadline6-dev_6.2-2 libselinux1_2.0.98-1.1 libsepol1_2.0.42-1 libslang2_2.2.4-2 libsm6_2:1.2.0-2 libss2_1.42~WIP-2011-07-02-1 libstdc++6_4.6.1-6 libstdc++6-4.6-dev_4.6.1-6 libthai-data_0.1.15-2 libthai0_0.1.15-2 libtiff4_3.9.5-1 libtimedate-perl_1.2000-1 libunistring0_0.9.3-4 libusb-0.1-4_2:0.1.12-18 libuuid1_2.19.1-5 libx11-6_2:1.4.4-1 libx11-data_2:1.4.4-1 libxau6_1:1.0.6-3 libxcb-render0_1.7-3 libxcb-shm0_1.7-3 libxcb1_1.7-3 libxdmcp6_1:1.1.0-3 libxext6_2:1.3.0-3 libxft2_2.2.0-3 libxml2_2.7.8.dfsg-4 libxrender1_1:0.9.6-2 libxss1_1:1.2.1-2 libxt6_1:1.1.1-2 linux-libc-dev_3.0.0-1 login_1:4.1.4.2+svn3283-3 lsb-base_3.2-27 make_3.81-8.1 man-db_2.6.0.2-2 mawk_1.3.3-15 mount_2.19.1-5 multiarch-support_2.13-15 ncurses-base_5.9-1 ncurses-bin_5.9-1 passwd_1:4.1.4.2+svn3283-3 patch_2.6.1-2 perl_5.12.4-2 perl-base_5.12.4-2 perl-modules_5.12.4-2 po-debconf_1.0.16+nmu1 r-base-core_2.13.1-1 r-base-dev_2.13.1-1 readline-common_6.2-2 sed_4.2.1-9 sensible-utils_0.0.6 sudo_1.7.4p6-1 sysv-rc_2.88dsf-13.11 sysvinit_2.88dsf-13.11 sysvinit-utils_2.88dsf-13.11 tar_1.25-3 tcl8.5_8.5.10-1 tk8.5_8.5.10-1 ttf-dejavu-core_2.33-1 tzdata_2011h-3 ucf_3.0025+nmu2 unzip_6.0-5 util-linux_2.19.1-5 x11-common_1:7.6+7 xdg-utils_1.1.0~rc1-2 xz-utils_5.0.0-2 zip_3.0-4 zlib1g_1:1.2.3.4.dfsg-3 zlib1g-dev_1:1.2.3.4.dfsg-3
┌──────────────────────────────────────────────────────────────────────────────┐
│ Build │
@@ -585,12 +548,12 @@ Unpack source
─────────────
gpgv: keyblock resource `/home/buildd/.gnupg/trustedkeys.gpg': file open error
-gpgv: Signature made Thu Jun 2 04:18:41 2011 UTC using RSA key ID 2295D502
+gpgv: Signature made Sun Aug 14 11:36:35 2011 UTC using RSA key ID 2295D502
gpgv: Can't check signature: public key not found
-dpkg-source: warning: failed to verify signature on ./r-bioc-limma_3.8.2-1.dsc
-dpkg-source: info: extracting r-bioc-limma in r-bioc-limma-3.8.2
-dpkg-source: info: unpacking r-bioc-limma_3.8.2.orig.tar.gz
-dpkg-source: info: applying r-bioc-limma_3.8.2-1.diff.gz
+dpkg-source: warning: failed to verify signature on ./r-bioc-limma_3.8.3-1.dsc
+dpkg-source: info: extracting r-bioc-limma in r-bioc-limma-3.8.3
+dpkg-source: info: unpacking r-bioc-limma_3.8.3.orig.tar.gz
+dpkg-source: info: applying r-bioc-limma_3.8.3-1.diff.gz
Check disc space
────────────────
@@ -605,8 +568,8 @@ dpkg-buildpackage: export CXXFLAGS from dpkg-buildflags (origin: vendor): -g -O2
dpkg-buildpackage: export FFLAGS from dpkg-buildflags (origin: vendor): -g -O2
dpkg-buildpackage: export LDFLAGS from dpkg-buildflags (origin: vendor):
dpkg-buildpackage: source package r-bioc-limma
-dpkg-buildpackage: source version 3.8.2-1
- dpkg-source --before-build r-bioc-limma-3.8.2
+dpkg-buildpackage: source version 3.8.3-1
+ dpkg-source --before-build r-bioc-limma-3.8.3
dpkg-buildpackage: host architecture s390
fakeroot debian/rules clean
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
@@ -614,9 +577,9 @@ test -x debian/rules
dh_testroot
/usr/bin/make -f debian/rules reverse-config
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
-make[1]: Entering directory `/build/buildd-r-bioc-limma_3.8.2-1-s390-eayjsJ/r-bioc-limma-3.8.2'
+make[1]: Entering directory `/build/buildd-r-bioc-limma_3.8.3-1-s390-8ETws2/r-bioc-limma-3.8.3'
make[1]: Nothing to be done for `reverse-config'.
-make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.8.2-1-s390-eayjsJ/r-bioc-limma-3.8.2'
+make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.8.3-1-s390-8ETws2/r-bioc-limma-3.8.3'
if [ "reverse-patches" = "reverse-patches" ]; then rm -f debian/stamp-patched; fi
patches:
if [ "reverse-patches" != "reverse-patches" ]; then touch debian/stamp-patched; fi
@@ -637,20 +600,20 @@ rm -f config.log config.status
test -x debian/rules
mkdir -p "."
/usr/bin/make -f debian/rules reverse-config
-make[1]: Entering directory `/build/buildd-r-bioc-limma_3.8.2-1-s390-eayjsJ/r-bioc-limma-3.8.2'
+make[1]: Entering directory `/build/buildd-r-bioc-limma_3.8.3-1-s390-8ETws2/r-bioc-limma-3.8.3'
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
make[1]: Nothing to be done for `reverse-config'.
-make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.8.2-1-s390-eayjsJ/r-bioc-limma-3.8.2'
+make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.8.3-1-s390-8ETws2/r-bioc-limma-3.8.3'
if [ "debian/stamp-patched" = "reverse-patches" ]; then rm -f debian/stamp-patched; fi
patches:
if [ "debian/stamp-patched" != "reverse-patches" ]; then touch debian/stamp-patched; fi
if [ "debian/stamp-patched" != "reverse-patches" ] ; then \
/usr/bin/make -f debian/rules update-config ; \
fi
-make[1]: Entering directory `/build/buildd-r-bioc-limma_3.8.2-1-s390-eayjsJ/r-bioc-limma-3.8.2'
+make[1]: Entering directory `/build/buildd-r-bioc-limma_3.8.3-1-s390-8ETws2/r-bioc-limma-3.8.3'
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
make[1]: Nothing to be done for `update-config'.
-make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.8.2-1-s390-eayjsJ/r-bioc-limma-3.8.2'
+make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.8.3-1-s390-8ETws2/r-bioc-limma-3.8.3'
fakeroot debian/rules binary-arch
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
test -x debian/rules
@@ -660,24 +623,24 @@ dh_installdirs -A
mkdir -p "."
dh_installdirs usr/lib/R/site-library
if test -f /usr/bin/xvfb-run; then \
- xvfb-run \
- R CMD INSTALL -l /build/buildd-r-bioc-limma_3.8.2-1-s390-eayjsJ/r-bioc-limma-3.8.2/debian/r-bioc-limma/usr/lib/R/site-library --clean \
+ xvfb-run -a \
+ R CMD INSTALL -l /build/buildd-r-bioc-limma_3.8.3-1-s390-8ETws2/r-bioc-limma-3.8.3/debian/r-bioc-limma/usr/lib/R/site-library --clean \
. ; \
else \
- R CMD INSTALL -l /build/buildd-r-bioc-limma_3.8.2-1-s390-eayjsJ/r-bioc-limma-3.8.2/debian/r-bioc-limma/usr/lib/R/site-library \
+ R CMD INSTALL -l /build/buildd-r-bioc-limma_3.8.3-1-s390-8ETws2/r-bioc-limma-3.8.3/debian/r-bioc-limma/usr/lib/R/site-library \
--clean . ;\
fi
* installing *source* package 'limma' ...
** libs
-make[1]: Entering directory `/build/buildd-r-bioc-limma_3.8.2-1-s390-eayjsJ/r-bioc-limma-3.8.2/src'
+make[1]: Entering directory `/build/buildd-r-bioc-limma_3.8.3-1-s390-8ETws2/r-bioc-limma-3.8.3/src'
gcc -I/usr/share/R/include -fPIC -std=gnu99 -O3 -pipe -g -c normexp.c -o normexp.o
normexp.c: In function 'fit_saddle_nelder_mead':
normexp.c:153:3: warning: floating constant exceeds range of 'double' [-Woverflow]
gcc -shared -o limma.so normexp.o -L/usr/lib/R/lib -lR
-make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.8.2-1-s390-eayjsJ/r-bioc-limma-3.8.2/src'
-make[1]: Entering directory `/build/buildd-r-bioc-limma_3.8.2-1-s390-eayjsJ/r-bioc-limma-3.8.2/src'
-make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.8.2-1-s390-eayjsJ/r-bioc-limma-3.8.2/src'
-installing to /build/buildd-r-bioc-limma_3.8.2-1-s390-eayjsJ/r-bioc-limma-3.8.2/debian/r-bioc-limma/usr/lib/R/site-library/limma/libs
+make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.8.3-1-s390-8ETws2/r-bioc-limma-3.8.3/src'
+make[1]: Entering directory `/build/buildd-r-bioc-limma_3.8.3-1-s390-8ETws2/r-bioc-limma-3.8.3/src'
+make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.8.3-1-s390-8ETws2/r-bioc-limma-3.8.3/src'
+installing to /build/buildd-r-bioc-limma_3.8.3-1-s390-8ETws2/r-bioc-limma-3.8.3/debian/r-bioc-limma/usr/lib/R/site-library/limma/libs
** R
** inst
** preparing package for lazy loading
@@ -687,17 +650,17 @@ installing to /build/buildd-r-bioc-limma_3.8.2-1-s390-eayjsJ/r-bioc-limma-3.8.2/
** testing if installed package can be loaded
* DONE (limma)
-rm -vf /build/buildd-r-bioc-limma_3.8.2-1-s390-eayjsJ/r-bioc-limma-3.8.2/debian/r-bioc-limma/usr/lib/R/site-library/R.css \
- /build/buildd-r-bioc-limma_3.8.2-1-s390-eayjsJ/r-bioc-limma-3.8.2/debian/r-bioc-limma/usr/lib/R/site-library/limma/COPYING \
- /build/buildd-r-bioc-limma_3.8.2-1-s390-eayjsJ/r-bioc-limma-3.8.2/debian/r-bioc-limma/usr/lib/R/site-library/limma/LICENSE.txt
+rm -vf /build/buildd-r-bioc-limma_3.8.3-1-s390-8ETws2/r-bioc-limma-3.8.3/debian/r-bioc-limma/usr/lib/R/site-library/R.css \
+ /build/buildd-r-bioc-limma_3.8.3-1-s390-8ETws2/r-bioc-limma-3.8.3/debian/r-bioc-limma/usr/lib/R/site-library/limma/COPYING \
+ /build/buildd-r-bioc-limma_3.8.3-1-s390-8ETws2/r-bioc-limma-3.8.3/debian/r-bioc-limma/usr/lib/R/site-library/limma/LICENSE.txt
if test -f debian/overrides; then \
- install -d /build/buildd-r-bioc-limma_3.8.2-1-s390-eayjsJ/r-bioc-limma-3.8.2/debian/r-bioc-limma/usr/share/lintian/overrides ; \
+ install -d /build/buildd-r-bioc-limma_3.8.3-1-s390-8ETws2/r-bioc-limma-3.8.3/debian/r-bioc-limma/usr/share/lintian/overrides ; \
install -m 0644 debian/overrides \
- /build/buildd-r-bioc-limma_3.8.2-1-s390-eayjsJ/r-bioc-limma-3.8.2/debian/r-bioc-limma/usr/share/lintian/overrides/r-bioc-limma; \
+ /build/buildd-r-bioc-limma_3.8.3-1-s390-8ETws2/r-bioc-limma-3.8.3/debian/r-bioc-limma/usr/share/lintian/overrides/r-bioc-limma; \
fi
Adding cdbs dependencies to debian/r-bioc-limma.substvars
dh_installdirs -pr-bioc-limma
-echo "R:Depends=r-base-core (>= 2.13.0~)" >> debian/r-bioc-limma.substvars
+echo "R:Depends=r-base-core (>= 2.13.1~)" >> debian/r-bioc-limma.substvars
dh_installdocs -pr-bioc-limma
dh_installexamples -pr-bioc-limma
dh_installman -pr-bioc-limma
@@ -729,58 +692,58 @@ dh_shlibdeps -pr-bioc-limma
dh_gencontrol -pr-bioc-limma
dh_md5sums -pr-bioc-limma
dh_builddeb -pr-bioc-limma
-dpkg-deb: building package `r-bioc-limma' in `../r-bioc-limma_3.8.2-1_s390.deb'.
- dpkg-genchanges -B -ms390 Build Daemon (zandonai) <buildd_s390-zandonai at buildd.debian.org> >../r-bioc-limma_3.8.2-1_s390.changes
+dpkg-deb: building package `r-bioc-limma' in `../r-bioc-limma_3.8.3-1_s390.deb'.
+ dpkg-genchanges -B -ms390 Build Daemon (zandonai) <buildd_s390-zandonai at buildd.debian.org> >../r-bioc-limma_3.8.3-1_s390.changes
dpkg-genchanges: arch-specific upload - not including arch-independent packages
dpkg-genchanges: binary-only upload - not including any source code
- dpkg-source --after-build r-bioc-limma-3.8.2
+ dpkg-source --after-build r-bioc-limma-3.8.3
dpkg-buildpackage: binary only upload (no source included)
────────────────────────────────────────────────────────────────────────────────
-Build finished at 20110602-1411
+Build finished at 20110814-1257
-r-bioc-limma_3.8.2-1_s390.changes:
+r-bioc-limma_3.8.3-1_s390.changes:
Format: 1.8
-Date: Thu, 02 Jun 2011 13:07:58 +0900
+Date: Sun, 14 Aug 2011 20:30:21 +0900
Source: r-bioc-limma
Binary: r-bioc-limma
Architecture: s390
-Version: 3.8.2-1
+Version: 3.8.3-1
Distribution: sid
Urgency: low
Maintainer: s390 Build Daemon (zandonai) <buildd_s390-zandonai at buildd.debian.org>
Changed-By: Charles Plessy <plessy at debian.org>
Description:
r-bioc-limma - linear models for microarray data
-Closes: 628548
Changes:
- r-bioc-limma (3.8.2-1) unstable; urgency=low
+ r-bioc-limma (3.8.3-1) unstable; urgency=low
.
- * Initial release (closes: #628548).
+ * New upstream release.
+ * [e891bb6b] Corrected VCS-Git url.
Checksums-Sha1:
- 77c1be36fa14fb21f32e3f471a4bb4abab70402f 1397198 r-bioc-limma_3.8.2-1_s390.deb
+ 7a5940b6fce443a15b82df085c16ce062abb1053 1400118 r-bioc-limma_3.8.3-1_s390.deb
Checksums-Sha256:
- 6126b84c0769847f32aca1567759ba1ee141c03b9519e5dc2c162c8bff1ae86b 1397198 r-bioc-limma_3.8.2-1_s390.deb
+ 04d51999f93483ed293deab99138905d9242a2c7dfb5bf0e73a43e51f25f9cb1 1400118 r-bioc-limma_3.8.3-1_s390.deb
Files:
- c9ee439ce9b571b587c74ec70589c9f3 1397198 gnu-r optional r-bioc-limma_3.8.2-1_s390.deb
+ df67e9b0a7b42242c6ab5e21548c15e8 1400118 gnu-r optional r-bioc-limma_3.8.3-1_s390.deb
┌──────────────────────────────────────────────────────────────────────────────┐
│ Package contents │
└──────────────────────────────────────────────────────────────────────────────┘
-r-bioc-limma_3.8.2-1_s390.deb
+r-bioc-limma_3.8.3-1_s390.deb
─────────────────────────────
new debian package, version 2.0.
- size 1397198 bytes: control archive= 1508 bytes.
+ size 1400118 bytes: control archive= 1513 bytes.
768 bytes, 16 lines control
2226 bytes, 29 lines md5sums
Package: r-bioc-limma
- Version: 3.8.2-1
+ Version: 3.8.3-1
Architecture: s390
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
Installed-Size: 1676
- Depends: libc6 (>= 2.1.3), r-base-core (>= 2.13.0~)
+ Depends: libc6 (>= 2.1.3), r-base-core (>= 2.13.1~)
Section: gnu-r
Priority: optional
Homepage: http://bioinf.wehi.edu.au/limma/
@@ -792,50 +755,50 @@ r-bioc-limma_3.8.2-1_s390.deb
apply to all array platforms and treat Affymetrix, single channel and two
channel experiments in a unified way.
-drwxr-xr-x root/root 0 2011-06-02 14:11 ./
-drwxr-xr-x root/root 0 2011-06-02 14:11 ./usr/
-drwxr-xr-x root/root 0 2011-06-02 14:11 ./usr/lib/
-drwxr-xr-x root/root 0 2011-06-02 14:11 ./usr/lib/R/
-drwxr-xr-x root/root 0 2011-06-02 14:11 ./usr/lib/R/site-library/
-drwxr-xr-x root/root 0 2011-06-02 14:11 ./usr/lib/R/site-library/limma/
--rw-r--r-- root/root 9360 2011-06-02 14:11 ./usr/lib/R/site-library/limma/INDEX
-drwxr-xr-x root/root 0 2011-06-02 14:11 ./usr/lib/R/site-library/limma/R/
--rw-r--r-- root/root 384 2011-06-02 14:11 ./usr/lib/R/site-library/limma/R/limma
--rw-r--r-- root/root 172729 2011-06-02 14:11 ./usr/lib/R/site-library/limma/R/limma.rdb
--rw-r--r-- root/root 3739 2011-06-02 14:11 ./usr/lib/R/site-library/limma/R/limma.rdx
-drwxr-xr-x root/root 0 2011-06-02 14:11 ./usr/lib/R/site-library/limma/html/
--rw-r--r-- root/root 1179 2011-06-02 14:11 ./usr/lib/R/site-library/limma/html/R.css
--rw-r--r-- root/root 34039 2011-06-02 14:11 ./usr/lib/R/site-library/limma/html/00Index.html
-drwxr-xr-x root/root 0 2011-06-02 14:11 ./usr/lib/R/site-library/limma/libs/
--rw-r--r-- root/root 8492 2011-06-02 14:11 ./usr/lib/R/site-library/limma/libs/limma.so
-drwxr-xr-x root/root 0 2011-06-02 14:11 ./usr/lib/R/site-library/limma/help/
--rw-r--r-- root/root 1335 2011-06-02 14:11 ./usr/lib/R/site-library/limma/help/paths.rds
--rw-r--r-- root/root 449811 2011-06-02 14:11 ./usr/lib/R/site-library/limma/help/limma.rdb
--rw-r--r-- root/root 3249 2011-06-02 14:11 ./usr/lib/R/site-library/limma/help/limma.rdx
--rw-r--r-- root/root 2361 2011-06-02 14:11 ./usr/lib/R/site-library/limma/help/aliases.rds
--rw-r--r-- root/root 6150 2011-06-02 14:11 ./usr/lib/R/site-library/limma/help/AnIndex
--rw-r--r-- root/root 1872 2011-06-02 14:11 ./usr/lib/R/site-library/limma/NAMESPACE
-drwxr-xr-x root/root 0 2011-06-02 14:11 ./usr/lib/R/site-library/limma/doc/
--rwxr-xr-x root/root 1711 2011-06-02 14:11 ./usr/lib/R/site-library/limma/doc/limma.Rnw
--rwxr-xr-x root/root 673 2011-06-02 14:11 ./usr/lib/R/site-library/limma/doc/index.html
--rw-r--r-- root/root 687780 2011-06-02 14:11 ./usr/lib/R/site-library/limma/doc/usersguide.pdf
--rw-r--r-- root/root 45616 2011-06-02 14:11 ./usr/lib/R/site-library/limma/doc/limma.pdf
--rwxr-xr-x root/root 84633 2011-06-02 14:11 ./usr/lib/R/site-library/limma/doc/changelog.txt
--rw-r--r-- root/root 1004 2011-06-02 14:11 ./usr/lib/R/site-library/limma/DESCRIPTION
-drwxr-xr-x root/root 0 2011-06-02 14:11 ./usr/lib/R/site-library/limma/Meta/
--rw-r--r-- root/root 503 2011-06-02 14:11 ./usr/lib/R/site-library/limma/Meta/nsInfo.rds
--rw-r--r-- root/root 217 2011-06-02 14:11 ./usr/lib/R/site-library/limma/Meta/vignette.rds
--rw-r--r-- root/root 5522 2011-06-02 14:11 ./usr/lib/R/site-library/limma/Meta/hsearch.rds
--rw-r--r-- root/root 2853 2011-06-02 14:11 ./usr/lib/R/site-library/limma/Meta/links.rds
--rw-r--r-- root/root 1049 2011-06-02 14:11 ./usr/lib/R/site-library/limma/Meta/package.rds
--rw-r--r-- root/root 5946 2011-06-02 14:11 ./usr/lib/R/site-library/limma/Meta/Rd.rds
--rwxr-xr-x root/root 1230 2011-06-02 14:11 ./usr/lib/R/site-library/limma/CITATION
-drwxr-xr-x root/root 0 2011-06-02 14:11 ./usr/share/
-drwxr-xr-x root/root 0 2011-06-02 14:11 ./usr/share/doc/
-drwxr-xr-x root/root 0 2011-06-02 14:11 ./usr/share/doc/r-bioc-limma/
--rw-r--r-- root/root 25983 2011-05-20 04:14 ./usr/share/doc/r-bioc-limma/changelog.gz
--rw-r--r-- root/root 161 2011-06-02 14:11 ./usr/share/doc/r-bioc-limma/changelog.Debian.gz
--rw-r--r-- root/root 2116 2011-06-02 14:11 ./usr/share/doc/r-bioc-limma/copyright
+drwxr-xr-x root/root 0 2011-08-14 12:57 ./
+drwxr-xr-x root/root 0 2011-08-14 12:57 ./usr/
+drwxr-xr-x root/root 0 2011-08-14 12:57 ./usr/lib/
+drwxr-xr-x root/root 0 2011-08-14 12:57 ./usr/lib/R/
+drwxr-xr-x root/root 0 2011-08-14 12:57 ./usr/lib/R/site-library/
+drwxr-xr-x root/root 0 2011-08-14 12:57 ./usr/lib/R/site-library/limma/
+-rw-r--r-- root/root 9360 2011-08-14 12:57 ./usr/lib/R/site-library/limma/INDEX
+drwxr-xr-x root/root 0 2011-08-14 12:57 ./usr/lib/R/site-library/limma/R/
+-rw-r--r-- root/root 384 2011-08-14 12:57 ./usr/lib/R/site-library/limma/R/limma
+-rw-r--r-- root/root 173274 2011-08-14 12:57 ./usr/lib/R/site-library/limma/R/limma.rdb
+-rw-r--r-- root/root 3749 2011-08-14 12:57 ./usr/lib/R/site-library/limma/R/limma.rdx
+drwxr-xr-x root/root 0 2011-08-14 12:57 ./usr/lib/R/site-library/limma/html/
+-rw-r--r-- root/root 1179 2011-08-14 12:57 ./usr/lib/R/site-library/limma/html/R.css
+-rw-r--r-- root/root 34039 2011-08-14 12:57 ./usr/lib/R/site-library/limma/html/00Index.html
+drwxr-xr-x root/root 0 2011-08-14 12:57 ./usr/lib/R/site-library/limma/libs/
+-rw-r--r-- root/root 8492 2011-08-14 12:57 ./usr/lib/R/site-library/limma/libs/limma.so
+drwxr-xr-x root/root 0 2011-08-14 12:57 ./usr/lib/R/site-library/limma/help/
+-rw-r--r-- root/root 1336 2011-08-14 12:57 ./usr/lib/R/site-library/limma/help/paths.rds
+-rw-r--r-- root/root 450025 2011-08-14 12:57 ./usr/lib/R/site-library/limma/help/limma.rdb
+-rw-r--r-- root/root 3258 2011-08-14 12:57 ./usr/lib/R/site-library/limma/help/limma.rdx
+-rw-r--r-- root/root 2363 2011-08-14 12:57 ./usr/lib/R/site-library/limma/help/aliases.rds
+-rw-r--r-- root/root 6150 2011-08-14 12:57 ./usr/lib/R/site-library/limma/help/AnIndex
+-rw-r--r-- root/root 1872 2011-08-14 12:57 ./usr/lib/R/site-library/limma/NAMESPACE
+drwxr-xr-x root/root 0 2011-08-14 12:57 ./usr/lib/R/site-library/limma/doc/
+-rwxr-xr-x root/root 1711 2011-08-14 12:57 ./usr/lib/R/site-library/limma/doc/limma.Rnw
+-rwxr-xr-x root/root 673 2011-08-14 12:57 ./usr/lib/R/site-library/limma/doc/index.html
+-rw-r--r-- root/root 687780 2011-08-14 12:57 ./usr/lib/R/site-library/limma/doc/usersguide.pdf
+-rw-r--r-- root/root 45616 2011-08-14 12:57 ./usr/lib/R/site-library/limma/doc/limma.pdf
+-rwxr-xr-x root/root 84899 2011-08-14 12:57 ./usr/lib/R/site-library/limma/doc/changelog.txt
+-rw-r--r-- root/root 1004 2011-08-14 12:57 ./usr/lib/R/site-library/limma/DESCRIPTION
+drwxr-xr-x root/root 0 2011-08-14 12:57 ./usr/lib/R/site-library/limma/Meta/
+-rw-r--r-- root/root 505 2011-08-14 12:57 ./usr/lib/R/site-library/limma/Meta/nsInfo.rds
+-rw-r--r-- root/root 217 2011-08-14 12:57 ./usr/lib/R/site-library/limma/Meta/vignette.rds
+-rw-r--r-- root/root 5524 2011-08-14 12:57 ./usr/lib/R/site-library/limma/Meta/hsearch.rds
+-rw-r--r-- root/root 2854 2011-08-14 12:57 ./usr/lib/R/site-library/limma/Meta/links.rds
+-rw-r--r-- root/root 1051 2011-08-14 12:57 ./usr/lib/R/site-library/limma/Meta/package.rds
+-rw-r--r-- root/root 5947 2011-08-14 12:57 ./usr/lib/R/site-library/limma/Meta/Rd.rds
+-rwxr-xr-x root/root 1230 2011-08-14 12:57 ./usr/lib/R/site-library/limma/CITATION
+drwxr-xr-x root/root 0 2011-08-14 12:57 ./usr/share/
+drwxr-xr-x root/root 0 2011-08-14 12:57 ./usr/share/doc/
+drwxr-xr-x root/root 0 2011-08-14 12:57 ./usr/share/doc/r-bioc-limma/
+-rw-r--r-- root/root 26050 2011-08-08 16:14 ./usr/share/doc/r-bioc-limma/changelog.gz
+-rw-r--r-- root/root 234 2011-08-14 12:57 ./usr/share/doc/r-bioc-limma/changelog.Debian.gz
+-rw-r--r-- root/root 2117 2011-08-14 12:57 ./usr/share/doc/r-bioc-limma/copyright
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -849,7 +812,7 @@ Built successfully
│ Post Build │
└──────────────────────────────────────────────────────────────────────────────┘
-Purging /var/lib/schroot/mount/sid-s390-sbuild-25d119dc-d614-47ce-b3a7-c690c0ae051e/build/buildd-r-bioc-limma_3.8.2-1-s390-eayjsJ
+Purging /var/lib/schroot/mount/sid-s390-sbuild-0a0390c0-7418-4d13-bb7a-32471449ec27/build/buildd-r-bioc-limma_3.8.3-1-s390-8ETws2
Not cleaning session: cloned chroot in use
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -858,17 +821,17 @@ Not cleaning session: cloned chroot in use
Architecture: s390
Build-Space: 5080
-Build-Time: 15
+Build-Time: 14
Distribution: sid
-Install-Time: 68
-Job: r-bioc-limma_3.8.2-1
+Install-Time: 30
+Job: r-bioc-limma_3.8.3-1
Package: r-bioc-limma
-Package-Time: 118
-Source-Version: 3.8.2-1
+Package-Time: 81
+Source-Version: 3.8.3-1
Space: 5080
Status: successful
-Version: 3.8.2-1
+Version: 3.8.3-1
────────────────────────────────────────────────────────────────────────────────
-Finished at 20110602-1411
-Build needed 00:01:58, 5080k disc space
-Signature with key '9BD94C88' requested:
+Finished at 20110814-1257
+Build needed 00:01:21, 5080k disc space
+Signature with key '2D941D26' requested:
diff --git a/sparc.log b/sparc.log
index 26db80b..ed779f2 100644
--- a/sparc.log
+++ b/sparc.log
@@ -1,69 +1,69 @@
-From buildd at lebrun.debian.org Thu Jun 02 15:31:49 2011
+From buildd at lebrun.debian.org Tue Aug 16 12:53:16 2011
Return-path: <buildd at lebrun.debian.org>
-Received: from kokkonen.debian.org ([2001:41b8:202:deb:1a1a:0:52c3:4b61])
+Received: from merikanto.debian.org ([2001:858:2:2:216:35ff:fec4:a49a])
from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
- CN=kokkonen.debian.org,
- EMAIL=hostmaster at kokkonen.debian.org (verified)
+ CN=merikanto.debian.org,
+ EMAIL=hostmaster at merikanto.debian.org (verified)
by grieg.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
(Exim 4.72) (envelope-from <buildd at lebrun.debian.org>)
- id 1QS9sD-0006v1-KY
- for logs at buildd.debian.org; Thu, 02 Jun 2011 15:31:49 +0000
+ id 1QtJ8u-0005Bi-7M
+ for logs at buildd.debian.org; Tue, 16 Aug 2011 12:53:16 +0000
Received: from lebrun.debian.org ([193.198.184.10])
from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
CN=lebrun.debian.org, EMAIL=hostmaster at lebrun.debian.org (verified)
- by kokkonen.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
+ by merikanto.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
(Exim 4.72) (envelope-from <buildd at lebrun.debian.org>)
- id 1QS9sC-000831-QQ
- for logs at buildd.debian.org; Thu, 02 Jun 2011 15:31:48 +0000
-Received: from buildd by lebrun.debian.org with local (Exim 4.69)
+ id 1QtJ8s-0000p2-Rp
+ for logs at buildd.debian.org; Tue, 16 Aug 2011 12:53:15 +0000
+Received: from buildd by lebrun.debian.org with local (Exim 4.72)
(envelope-from <buildd at lebrun.debian.org>)
- id 1QS9sC-00020h-1g; Thu, 02 Jun 2011 15:31:48 +0000
+ id 1QtJ8q-0003jR-FQ; Tue, 16 Aug 2011 12:53:12 +0000
+Message-Id: <E1QtJ8q-0003jR-FQ at lebrun.debian.org>
MIME-Version: 1.0
Content-Transfer-Encoding: binary
-X-Mailer: MIME::Lite 3.021 (F2.76; B3.07_01; Q3.07)
-Date: Thu, 2 Jun 2011 15:31:47 +0000
+X-Mailer: MIME::Lite 3.027 (F2.77; B3.08; Q3.08)
+Date: Tue, 16 Aug 2011 12:53:12 +0000
From: buildd on lebrun <buildd at lebrun.debian.org>
To: logs at buildd.debian.org,buildd-admin at lebrun.debian.org
-Subject: Log for successful build of r-bioc-limma_3.8.2-1 on sparc (dist=sid)
-Key-Id: 81587D01
-Message-Id: <E1QS9sC-00020h-1g at lebrun.debian.org>
+Subject: Log for successful build of r-bioc-limma_3.8.3-1 on sparc (dist=sid)
+Key-Id: 632E3DB6
Delivered-To: logs at buildd.debian.org
sbuild (Debian sbuild) 0.61.0 (23 Feb 2011) on lebrun.debian.org
╔══════════════════════════════════════════════════════════════════════════════╗
-║ r-bioc-limma 3.8.2-1 (sparc) 02 Jun 2011 15:26 ║
+║ r-bioc-limma 3.8.3-1 (sparc) 16 Aug 2011 12:47 ║
╚══════════════════════════════════════════════════════════════════════════════╝
Package: r-bioc-limma
-Version: 3.8.2-1
-Source Version: 3.8.2-1
+Version: 3.8.3-1
+Source Version: 3.8.3-1
Architecture: sparc
Get:1 http://debian.carnet.hr unstable InRelease [146 kB]
Get:2 http://incoming.debian.org unstable InRelease [146 kB]
-Get:3 http://debian.carnet.hr unstable/main Sources [5270 kB]
-Get:4 http://debian.carnet.hr unstable/contrib Sources [49.7 kB]
+Get:3 http://debian.carnet.hr unstable/main Sources [5449 kB]
Ign http://incoming.debian.org InRelease
+Get:4 http://debian.carnet.hr unstable/contrib Sources [52.5 kB]
Get:5 http://incoming.debian.org Release.gpg [836 B]
-Get:6 http://incoming.debian.org unstable/main Sources [5270 kB]
-Get:7 http://debian.carnet.hr unstable/non-free Sources [92.2 kB]
-Get:8 http://debian.carnet.hr unstable/main sparc Packages [7207 kB]
-Get:9 http://debian.carnet.hr unstable/contrib sparc Packages [54.0 kB]
+Get:6 http://incoming.debian.org Release [1604 B]
+Get:7 http://incoming.debian.org unstable/main Sources [5449 kB]
+Get:8 http://debian.carnet.hr unstable/non-free Sources [95.7 kB]
+Get:9 http://debian.carnet.hr unstable/main sparc Packages [7439 kB]
+Get:10 http://debian.carnet.hr unstable/contrib sparc Packages [54.7 kB]
Ign http://debian.carnet.hr unstable/contrib TranslationIndex
-Get:10 http://debian.carnet.hr unstable/main TranslationIndex [2264 B]
-Get:11 http://incoming.debian.org unstable/contrib Sources [49.7 kB]
-Get:12 http://incoming.debian.org unstable/non-free Sources [92.2 kB]
-Get:13 http://incoming.debian.org unstable/main sparc Packages [7207 kB]
-Get:14 http://incoming.debian.org unstable/contrib sparc Packages [54.0 kB]
+Get:11 http://debian.carnet.hr unstable/main TranslationIndex [2185 B]
+Get:12 http://incoming.debian.org unstable/contrib Sources [52.5 kB]
+Get:13 http://incoming.debian.org unstable/non-free Sources [95.7 kB]
+Get:14 http://incoming.debian.org unstable/main sparc Packages [7439 kB]
+Get:15 http://incoming.debian.org unstable/contrib sparc Packages [54.7 kB]
Ign http://incoming.debian.org unstable/contrib TranslationIndex
-Hit http://incoming.debian.org unstable/main TranslationIndex
-Get:15 http://incoming.debian.org Release [1604 B]
-Get:16 http://incoming.debian.org Sources [36.8 kB]
-Get:17 http://incoming.debian.org Packages [370 kB]
+Get:16 http://incoming.debian.org unstable/main TranslationIndex [2185 B]
+Get:17 http://incoming.debian.org Sources [38.3 kB]
+Get:18 http://incoming.debian.org Packages [255 kB]
Ign http://debian.carnet.hr unstable/contrib Translation-en
-Ign http://incoming.debian.org unstable/contrib Translation-en
Ign http://incoming.debian.org Translation-en
-Fetched 26.0 MB in 28s (927 kB/s)
+Ign http://incoming.debian.org unstable/contrib Translation-en
+Fetched 26.8 MB in 28s (938 kB/s)
Reading package lists...
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -83,12 +83,12 @@ Reading package lists...
Building dependency tree...
Reading state information...
NOTICE: 'r-bioc-limma' packaging is maintained in the 'Git' version control system at:
-git://anonscm.debian.org/debian-med/r-bioc-limma.git
+git://git.debian.org/git/debian-med/r-bioc-limma.git
Need to get 921 kB of source archives.
-Get:1 http://incoming.debian.org/buildd-unstable/ r-bioc-limma 3.8.2-1 (dsc) [1931 B]
-Get:2 http://incoming.debian.org/buildd-unstable/ r-bioc-limma 3.8.2-1 (tar) [917 kB]
-Get:3 http://incoming.debian.org/buildd-unstable/ r-bioc-limma 3.8.2-1 (diff) [2158 B]
-Fetched 921 kB in 1s (600 kB/s)
+Get:1 http://debian.carnet.hr/debian/ unstable/main r-bioc-limma 3.8.3-1 (dsc) [1931 B]
+Get:2 http://debian.carnet.hr/debian/ unstable/main r-bioc-limma 3.8.3-1 (tar) [917 kB]
+Get:3 http://debian.carnet.hr/debian/ unstable/main r-bioc-limma 3.8.3-1 (diff) [2212 B]
+Fetched 921 kB in 0s (1063 kB/s)
Download complete and in download only mode
Check arch
@@ -102,18 +102,18 @@ Check arch
Build-Depends: build-essential, fakeroot
Checking for already installed dependencies...
build-essential: already installed (11.5)
-fakeroot: already installed (1.15.1-1)
+fakeroot: already installed (1.16-1)
Checking for dependency conflicts...
Installing positive dependencies:
Reading package lists...
Building dependency tree...
Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
+0 upgraded, 0 newly installed, 0 to remove and 3 not upgraded.
Removing negative dependencies:
Reading package lists...
Building dependency tree...
Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
+0 upgraded, 0 newly installed, 0 to remove and 3 not upgraded.
Checking correctness of dependencies...
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -122,41 +122,41 @@ Checking correctness of dependencies...
Build-Depends: base-files, base-passwd, bash, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, ncurses-base, ncurses-bin, perl-base, sed, login, sysvinit-utils, sysvinit, tar, bsdutils, mount, util-linux, libc6-dev | libc-dev, libc6-dev-sparc64, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 8), cdbs, r-base-dev (>= 2.10.0)
Checking for already installed dependencies...
-base-files: already installed (6.4)
-base-passwd: already installed (3.5.22+b1)
+base-files: already installed (6.5)
+base-passwd: already installed (3.5.23)
bash: already installed (4.1-3)
coreutils: already installed (8.5-1)
dash: already installed (0.5.5.1-7.4)
-debianutils: already installed (4.0.1)
+debianutils: already installed (4.0.2)
diffutils: already installed (1:3.0-1)
dpkg: already installed (1.16.0.3)
-e2fsprogs: already installed (1.41.12-4)
+e2fsprogs: already installed (1.42~WIP-2011-07-02-1)
findutils: already installed (4.4.2-1+b2)
-grep: already installed (2.8-2)
-gzip: already installed (1.3.12-9)
+grep: already installed (2.9-1)
+gzip: already installed (1.4-1)
hostname: already installed (3.06)
ncurses-base: already installed (5.9-1)
ncurses-bin: already installed (5.9-1)
-perl-base: already installed (5.12.3-7)
+perl-base: already installed (5.12.4-4)
sed: already installed (4.2.1-9)
login: already installed (1:4.1.4.2+svn3283-3)
-sysvinit-utils: already installed (2.88dsf-13.7)
-sysvinit: already installed (2.88dsf-13.7)
+sysvinit-utils: already installed (2.88dsf-13.11)
+sysvinit: already installed (2.88dsf-13.11)
tar: already installed (1.25-3)
-bsdutils: already installed (1:2.17.2-9.1)
-mount: already installed (2.17.2-9.1)
-util-linux: already installed (2.17.2-9.1)
-libc6-dev: already installed (2.13-4)
-libc6-dev-sparc64: already installed (2.13-4)
-gcc: already installed (4:4.4.5-9 >= 4:4.4.3 is satisfied)
-g++: already installed (4:4.4.5-9 >= 4:4.4.3 is satisfied)
+bsdutils: already installed (1:2.19.1-5)
+mount: already installed (2.19.1-5)
+util-linux: already installed (2.19.1-5)
+libc6-dev: already installed (2.13-16)
+libc6-dev-sparc64: already installed (2.13-16)
+gcc: already installed (4:4.6.1-2 >= 4:4.4.3 is satisfied)
+g++: already installed (4:4.6.1-2 >= 4:4.4.3 is satisfied)
make: already installed (3.81-8.1)
dpkg-dev: already installed (1.16.0.3 >= 1.13.5 is satisfied)
debhelper: missing
-Using default version 8.1.6
+Using default version 8.9.4
cdbs: missing
r-base-dev: missing
-Using default version 2.13.0-2
+Using default version 2.13.1-1
Checking for dependency conflicts...
Installing positive dependencies: debhelper cdbs r-base-dev
Reading package lists...
@@ -164,10 +164,10 @@ Building dependency tree...
Reading state information...
The following extra packages will be installed:
bsdmainutils dpatch file fontconfig fontconfig-config gettext gettext-base
- gfortran gfortran-4.4 groff-base html2text intltool-debian libblas-dev
+ gfortran gfortran-4.6 groff-base html2text intltool-debian libblas-dev
libblas3gf libbz2-dev libcairo2 libcroco3 libdatrie1 libexpat1
libfontconfig1 libfreetype6 libgfortran3 libglib2.0-0 libice6 libjpeg62
- libjpeg62-dev liblapack-dev liblapack3gf libmagic1 libncurses5-dev
+ libjpeg8 libjpeg8-dev liblapack-dev liblapack3gf libmagic1 libncurses5-dev
libpango1.0-0 libpaper-utils libpaper1 libpcre3 libpcre3-dev libpcrecpp0
libpipeline1 libpixman-1-0 libpng12-0 libpng12-dev libreadline-dev
libreadline6-dev libsm6 libthai-data libthai0 libtiff4 libunistring0
@@ -177,7 +177,7 @@ The following extra packages will be installed:
zlib1g-dev
Suggested packages:
wamerican wordlist whois vacation devscripts dh-make curl defoma gettext-doc
- gfortran-multilib gfortran-doc gfortran-4.4-multilib gfortran-4.4-doc
+ gfortran-multilib gfortran-doc gfortran-4.6-multilib gfortran-4.6-doc
libgfortran3-dbg groff ncurses-doc ttf-baekmuk ttf-arphic-gbsn00lp
ttf-arphic-bsmi00lp ttf-arphic-gkai00mp ttf-arphic-bkai00mp less www-browser
libmail-box-perl r-doc-info r-doc-pdf r-mathlib r-base-html tclreadline
@@ -188,10 +188,10 @@ Recommended packages:
xterm x-terminal-emulator libfile-mimeinfo-perl x11-utils x11-xserver-utils
The following NEW packages will be installed:
bsdmainutils cdbs debhelper dpatch file fontconfig fontconfig-config gettext
- gettext-base gfortran gfortran-4.4 groff-base html2text intltool-debian
+ gettext-base gfortran gfortran-4.6 groff-base html2text intltool-debian
libblas-dev libblas3gf libbz2-dev libcairo2 libcroco3 libdatrie1 libexpat1
libfontconfig1 libfreetype6 libgfortran3 libglib2.0-0 libice6 libjpeg62
- libjpeg62-dev liblapack-dev liblapack3gf libmagic1 libncurses5-dev
+ libjpeg8 libjpeg8-dev liblapack-dev liblapack3gf libmagic1 libncurses5-dev
libpango1.0-0 libpaper-utils libpaper1 libpcre3 libpcre3-dev libpcrecpp0
libpipeline1 libpixman-1-0 libpng12-0 libpng12-dev libreadline-dev
libreadline6-dev libsm6 libthai-data libthai0 libtiff4 libunistring0
@@ -199,342 +199,346 @@ The following NEW packages will be installed:
libxext6 libxft2 libxml2 libxrender1 libxss1 libxt6 man-db po-debconf
r-base-core r-base-dev tcl8.5 tk8.5 ttf-dejavu-core ucf unzip x11-common
xdg-utils zip zlib1g-dev
-0 upgraded, 75 newly installed, 0 to remove and 0 not upgraded.
-Need to get 49.0 MB of archives.
-After this operation, 116 MB of additional disk space will be used.
-Get:1 http://debian.carnet.hr/debian/ unstable/main bsdmainutils sparc 8.2.2 [205 kB]
-Get:2 http://debian.carnet.hr/debian/ unstable/main groff-base sparc 1.21-5 [1152 kB]
-Get:3 http://debian.carnet.hr/debian/ unstable/main libpipeline1 sparc 1.2.0-2 [35.9 kB]
-Get:4 http://debian.carnet.hr/debian/ unstable/main man-db sparc 2.6.0.2-1 [1013 kB]
-Get:5 http://debian.carnet.hr/debian/ unstable/main libmagic1 sparc 5.04-5+b1 [239 kB]
-Get:6 http://debian.carnet.hr/debian/ unstable/main file sparc 5.04-5+b1 [49.6 kB]
-Get:7 http://debian.carnet.hr/debian/ unstable/main gettext-base sparc 0.18.1.1-3 [140 kB]
-Get:8 http://debian.carnet.hr/debian/ unstable/main libpcre3 sparc 8.12-3 [265 kB]
-Get:9 http://debian.carnet.hr/debian/ unstable/main libxml2 sparc 2.7.8.dfsg-2+b1 [840 kB]
-Get:10 http://debian.carnet.hr/debian/ unstable/main ucf all 3.0025+nmu2 [70.6 kB]
-Get:11 http://debian.carnet.hr/debian/ unstable/main html2text sparc 1.3.2a-15 [100 kB]
-Get:12 http://debian.carnet.hr/debian/ unstable/main libglib2.0-0 sparc 2.28.6-1 [1556 kB]
-Get:13 http://debian.carnet.hr/debian/ unstable/main libcroco3 sparc 0.6.2-1 [119 kB]
-Get:14 http://debian.carnet.hr/debian/ unstable/main libunistring0 sparc 0.9.3-4 [424 kB]
-Get:15 http://debian.carnet.hr/debian/ unstable/main gettext sparc 0.18.1.1-3 [2006 kB]
-Get:16 http://debian.carnet.hr/debian/ unstable/main intltool-debian all 0.35.0+20060710.1 [30.8 kB]
-Get:17 http://debian.carnet.hr/debian/ unstable/main po-debconf all 1.0.16+nmu1 [223 kB]
-Get:18 http://debian.carnet.hr/debian/ unstable/main debhelper all 8.1.6 [557 kB]
-Get:19 http://debian.carnet.hr/debian/ unstable/main cdbs all 0.4.94 [75.5 kB]
-Get:20 http://debian.carnet.hr/debian/ unstable/main dpatch all 2.0.31 [92.3 kB]
-Get:21 http://debian.carnet.hr/debian/ unstable/main libexpat1 sparc 2.0.1-7 [131 kB]
-Get:22 http://debian.carnet.hr/debian/ unstable/main libfreetype6 sparc 2.4.4-1 [386 kB]
-Get:23 http://debian.carnet.hr/debian/ unstable/main ttf-dejavu-core all 2.33-1 [1550 kB]
-Get:24 http://debian.carnet.hr/debian/ unstable/main fontconfig-config all 2.8.0-2.2 [218 kB]
-Get:25 http://debian.carnet.hr/debian/ unstable/main libfontconfig1 sparc 2.8.0-2.2 [277 kB]
-Get:26 http://debian.carnet.hr/debian/ unstable/main fontconfig sparc 2.8.0-2.2 [333 kB]
-Get:27 http://debian.carnet.hr/debian/ unstable/main libgfortran3 sparc 4.6.0-10 [261 kB]
-Get:28 http://debian.carnet.hr/debian/ unstable/main gfortran-4.4 sparc 4.4.6-3 [3474 kB]
-Get:29 http://debian.carnet.hr/debian/ unstable/main gfortran sparc 4:4.4.5-9 [1122 B]
-Get:30 http://debian.carnet.hr/debian/ unstable/main libblas3gf sparc 1.2-8 [200 kB]
-Get:31 http://debian.carnet.hr/debian/ unstable/main libblas-dev sparc 1.2-8 [209 kB]
-Get:32 http://debian.carnet.hr/debian/ unstable/main libbz2-dev sparc 1.0.5-6 [36.6 kB]
-Get:33 http://debian.carnet.hr/debian/ unstable/main libpixman-1-0 sparc 0.21.8-1 [362 kB]
-Get:34 http://debian.carnet.hr/debian/ unstable/main libpng12-0 sparc 1.2.44-2 [174 kB]
-Get:35 http://debian.carnet.hr/debian/ unstable/main libxau6 sparc 1:1.0.6-1 [15.9 kB]
-Get:36 http://debian.carnet.hr/debian/ unstable/main libxdmcp6 sparc 1:1.1.0-1 [21.7 kB]
-Get:37 http://debian.carnet.hr/debian/ unstable/main libxcb1 sparc 1.7-2 [40.8 kB]
-Get:38 http://debian.carnet.hr/debian/ unstable/main libx11-data all 2:1.4.3-1 [186 kB]
-Get:39 http://debian.carnet.hr/debian/ unstable/main libx11-6 sparc 2:1.4.3-1 [842 kB]
-Get:40 http://debian.carnet.hr/debian/ unstable/main libxcb-render0 sparc 1.7-2 [15.2 kB]
-Get:41 http://debian.carnet.hr/debian/ unstable/main libxcb-shm0 sparc 1.7-2 [9122 B]
-Get:42 http://debian.carnet.hr/debian/ unstable/main libxrender1 sparc 1:0.9.6-1 [28.6 kB]
-Get:43 http://debian.carnet.hr/debian/ unstable/main libcairo2 sparc 1.10.2-6 [928 kB]
-Get:44 http://debian.carnet.hr/debian/ unstable/main libdatrie1 sparc 0.2.4-2 [25.1 kB]
-Get:45 http://debian.carnet.hr/debian/ unstable/main x11-common all 1:7.6+6 [280 kB]
-Get:46 http://debian.carnet.hr/debian/ unstable/main libice6 sparc 2:1.0.7-1 [50.7 kB]
-Get:47 http://debian.carnet.hr/debian/ unstable/main libjpeg62 sparc 6b1-1 [87.1 kB]
-Get:48 http://debian.carnet.hr/debian/ unstable/main libjpeg62-dev sparc 6b1-1 [191 kB]
-Get:49 http://debian.carnet.hr/debian/ unstable/main liblapack3gf sparc 3.3.0-4 [3978 kB]
-Get:50 http://debian.carnet.hr/debian/ unstable/main liblapack-dev sparc 3.3.0-4 [4300 kB]
-Get:51 http://debian.carnet.hr/debian/ unstable/main libncurses5-dev sparc 5.9-1 [481 kB]
-Get:52 http://debian.carnet.hr/debian/ unstable/main libthai-data all 0.1.15-1 [201 kB]
-Get:53 http://debian.carnet.hr/debian/ unstable/main libthai0 sparc 0.1.15-1 [41.1 kB]
-Get:54 http://debian.carnet.hr/debian/ unstable/main libxft2 sparc 2.2.0-2 [54.8 kB]
-Get:55 http://debian.carnet.hr/debian/ unstable/main libpango1.0-0 sparc 1.28.3-6 [414 kB]
-Get:56 http://debian.carnet.hr/debian/ unstable/main libpaper1 sparc 1.1.24+nmu1 [21.1 kB]
-Get:57 http://debian.carnet.hr/debian/ unstable/main libpaper-utils sparc 1.1.24+nmu1 [17.9 kB]
-Get:58 http://debian.carnet.hr/debian/ unstable/main libpcrecpp0 sparc 8.12-3 [112 kB]
-Get:59 http://debian.carnet.hr/debian/ unstable/main libpcre3-dev sparc 8.12-3 [312 kB]
-Get:60 http://debian.carnet.hr/debian/ unstable/main zlib1g-dev sparc 1:1.2.3.4.dfsg-3 [189 kB]
-Get:61 http://debian.carnet.hr/debian/ unstable/main libpng12-dev sparc 1.2.44-2 [265 kB]
-Get:62 http://debian.carnet.hr/debian/ unstable/main libreadline6-dev sparc 6.2-2 [258 kB]
-Get:63 http://debian.carnet.hr/debian/ unstable/main libreadline-dev sparc 6.2-2 [880 B]
-Get:64 http://debian.carnet.hr/debian/ unstable/main libsm6 sparc 2:1.2.0-1 [28.5 kB]
-Get:65 http://debian.carnet.hr/debian/ unstable/main libtiff4 sparc 3.9.5-1 [192 kB]
-Get:66 http://debian.carnet.hr/debian/ unstable/main libxext6 sparc 2:1.3.0-1 [47.3 kB]
-Get:67 http://debian.carnet.hr/debian/ unstable/main libxss1 sparc 1:1.2.1-1 [15.9 kB]
-Get:68 http://debian.carnet.hr/debian/ unstable/main libxt6 sparc 1:1.1.1-1 [184 kB]
-Get:69 http://debian.carnet.hr/debian/ unstable/main zip sparc 3.0-3 [335 kB]
-Get:70 http://debian.carnet.hr/debian/ unstable/main unzip sparc 6.0-4 [190 kB]
-Get:71 http://debian.carnet.hr/debian/ unstable/main xdg-utils all 1.1.0~rc1-2 [70.2 kB]
-Get:72 http://debian.carnet.hr/debian/ unstable/main tcl8.5 sparc 8.5.9-2 [1579 kB]
-Get:73 http://debian.carnet.hr/debian/ unstable/main tk8.5 sparc 8.5.9-2 [1142 kB]
-Get:74 http://debian.carnet.hr/debian/ unstable/main r-base-core sparc 2.13.0-2 [15.0 MB]
-Get:75 http://debian.carnet.hr/debian/ unstable/main r-base-dev all 2.13.0-2 [3490 B]
+0 upgraded, 76 newly installed, 0 to remove and 3 not upgraded.
+Need to get 49.9 MB of archives.
+After this operation, 118 MB of additional disk space will be used.
+Get:1 http://debian.carnet.hr/debian/ unstable/main libpipeline1 sparc 1.2.0-3 [36.0 kB]
+Get:2 http://debian.carnet.hr/debian/ unstable/main libpcre3 sparc 8.12-4 [231 kB]
+Get:3 http://debian.carnet.hr/debian/ unstable/main libdatrie1 sparc 0.2.4-3 [25.3 kB]
+Get:4 http://debian.carnet.hr/debian/ unstable/main libexpat1 sparc 2.0.1-7 [131 kB]
+Get:5 http://debian.carnet.hr/debian/ unstable/main libfreetype6 sparc 2.4.6-1 [394 kB]
+Get:6 http://debian.carnet.hr/debian/ unstable/main ucf all 3.0025+nmu2 [70.6 kB]
+Get:7 http://debian.carnet.hr/debian/ unstable/main ttf-dejavu-core all 2.33-1 [1550 kB]
+Get:8 http://debian.carnet.hr/debian/ unstable/main fontconfig-config all 2.8.0-3 [221 kB]
+Get:9 http://debian.carnet.hr/debian/ unstable/main libfontconfig1 sparc 2.8.0-3 [277 kB]
+Get:10 http://debian.carnet.hr/debian/ unstable/main libgfortran3 sparc 4.6.1-6 [260 kB]
+Get:11 http://debian.carnet.hr/debian/ unstable/main x11-common all 1:7.6+7 [275 kB]
+Get:12 http://debian.carnet.hr/debian/ unstable/main libice6 sparc 2:1.0.7-2 [50.9 kB]
+Get:13 http://debian.carnet.hr/debian/ unstable/main libpixman-1-0 sparc 0.22.2-1 [357 kB]
+Get:14 http://debian.carnet.hr/debian/ unstable/main libpng12-0 sparc 1.2.46-3 [179 kB]
+Get:15 http://debian.carnet.hr/debian/ unstable/main libxau6 sparc 1:1.0.6-3 [16.1 kB]
+Get:16 http://debian.carnet.hr/debian/ unstable/main libxdmcp6 sparc 1:1.1.0-3 [21.9 kB]
+Get:17 http://debian.carnet.hr/debian/ unstable/main libxcb1 sparc 1.7-3 [41.0 kB]
+Get:18 http://debian.carnet.hr/debian/ unstable/main libx11-data all 2:1.4.4-1 [183 kB]
+Get:19 http://debian.carnet.hr/debian/ unstable/main libx11-6 sparc 2:1.4.4-1 [831 kB]
+Get:20 http://debian.carnet.hr/debian/ unstable/main libxcb-render0 sparc 1.7-3 [15.5 kB]
+Get:21 http://debian.carnet.hr/debian/ unstable/main libxcb-shm0 sparc 1.7-3 [9284 B]
+Get:22 http://debian.carnet.hr/debian/ unstable/main libxrender1 sparc 1:0.9.6-2 [28.8 kB]
+Get:23 http://debian.carnet.hr/debian/ unstable/main libcairo2 sparc 1.10.2-6.1 [912 kB]
+Get:24 http://debian.carnet.hr/debian/ unstable/main libglib2.0-0 sparc 2.28.6-1 [1556 kB]
+Get:25 http://debian.carnet.hr/debian/ unstable/main libthai-data all 0.1.15-2 [201 kB]
+Get:26 http://debian.carnet.hr/debian/ unstable/main libthai0 sparc 0.1.15-2 [41.6 kB]
+Get:27 http://debian.carnet.hr/debian/ unstable/main libxft2 sparc 2.2.0-3 [55.0 kB]
+Get:28 http://debian.carnet.hr/debian/ unstable/main fontconfig sparc 2.8.0-3 [334 kB]
+Get:29 http://debian.carnet.hr/debian/ unstable/main libpango1.0-0 sparc 1.28.4-2 [400 kB]
+Get:30 http://debian.carnet.hr/debian/ unstable/main libpcrecpp0 sparc 8.12-4 [111 kB]
+Get:31 http://debian.carnet.hr/debian/ unstable/main libsm6 sparc 2:1.2.0-2 [28.6 kB]
+Get:32 http://debian.carnet.hr/debian/ unstable/main libxext6 sparc 2:1.3.0-3 [47.5 kB]
+Get:33 http://debian.carnet.hr/debian/ unstable/main libxss1 sparc 1:1.2.1-2 [15.9 kB]
+Get:34 http://debian.carnet.hr/debian/ unstable/main libxt6 sparc 1:1.1.1-2 [184 kB]
+Get:35 http://debian.carnet.hr/debian/ unstable/main bsdmainutils sparc 8.2.3 [206 kB]
+Get:36 http://debian.carnet.hr/debian/ unstable/main groff-base sparc 1.21-6 [1155 kB]
+Get:37 http://debian.carnet.hr/debian/ unstable/main man-db sparc 2.6.0.2-2 [1005 kB]
+Get:38 http://debian.carnet.hr/debian/ unstable/main libmagic1 sparc 5.04-5+b1 [239 kB]
+Get:39 http://debian.carnet.hr/debian/ unstable/main file sparc 5.04-5+b1 [49.6 kB]
+Get:40 http://debian.carnet.hr/debian/ unstable/main gettext-base sparc 0.18.1.1-4 [132 kB]
+Get:41 http://debian.carnet.hr/debian/ unstable/main libxml2 sparc 2.7.8.dfsg-4 [816 kB]
+Get:42 http://debian.carnet.hr/debian/ unstable/main html2text sparc 1.3.2a-15 [100 kB]
+Get:43 http://debian.carnet.hr/debian/ unstable/main libcroco3 sparc 0.6.2-1 [119 kB]
+Get:44 http://debian.carnet.hr/debian/ unstable/main libunistring0 sparc 0.9.3-4 [424 kB]
+Get:45 http://debian.carnet.hr/debian/ unstable/main gettext sparc 0.18.1.1-4 [1985 kB]
+Get:46 http://debian.carnet.hr/debian/ unstable/main intltool-debian all 0.35.0+20060710.1 [30.8 kB]
+Get:47 http://debian.carnet.hr/debian/ unstable/main po-debconf all 1.0.16+nmu1 [223 kB]
+Get:48 http://debian.carnet.hr/debian/ unstable/main debhelper all 8.9.4 [561 kB]
+Get:49 http://debian.carnet.hr/debian/ unstable/main cdbs all 0.4.96 [75.8 kB]
+Get:50 http://debian.carnet.hr/debian/ unstable/main dpatch all 2.0.31 [92.3 kB]
+Get:51 http://debian.carnet.hr/debian/ unstable/main gfortran-4.6 sparc 4.6.1-6 [4145 kB]
+Get:52 http://debian.carnet.hr/debian/ unstable/main gfortran sparc 4:4.6.1-2 [1124 B]
+Get:53 http://debian.carnet.hr/debian/ unstable/main libblas3gf sparc 1.2.20110419-2 [188 kB]
+Get:54 http://debian.carnet.hr/debian/ unstable/main libblas-dev sparc 1.2.20110419-2 [200 kB]
+Get:55 http://debian.carnet.hr/debian/ unstable/main libbz2-dev sparc 1.0.5-6 [36.6 kB]
+Get:56 http://debian.carnet.hr/debian/ unstable/main libjpeg62 sparc 6b1-2 [87.2 kB]
+Get:57 http://debian.carnet.hr/debian/ unstable/main libjpeg8 sparc 8c-2 [136 kB]
+Get:58 http://debian.carnet.hr/debian/ unstable/main libjpeg8-dev sparc 8c-2 [239 kB]
+Get:59 http://debian.carnet.hr/debian/ unstable/main liblapack3gf sparc 3.3.1-1 [3975 kB]
+Get:60 http://debian.carnet.hr/debian/ unstable/main liblapack-dev sparc 3.3.1-1 [4389 kB]
+Get:61 http://debian.carnet.hr/debian/ unstable/main libncurses5-dev sparc 5.9-1 [481 kB]
+Get:62 http://debian.carnet.hr/debian/ unstable/main libpaper1 sparc 1.1.24+nmu1 [21.1 kB]
+Get:63 http://debian.carnet.hr/debian/ unstable/main libpaper-utils sparc 1.1.24+nmu1 [17.9 kB]
+Get:64 http://debian.carnet.hr/debian/ unstable/main libpcre3-dev sparc 8.12-4 [312 kB]
+Get:65 http://debian.carnet.hr/debian/ unstable/main zlib1g-dev sparc 1:1.2.3.4.dfsg-3 [189 kB]
+Get:66 http://debian.carnet.hr/debian/ unstable/main libpng12-dev sparc 1.2.46-3 [262 kB]
+Get:67 http://debian.carnet.hr/debian/ unstable/main libreadline6-dev sparc 6.2-2 [258 kB]
+Get:68 http://debian.carnet.hr/debian/ unstable/main libreadline-dev sparc 6.2-2 [880 B]
+Get:69 http://debian.carnet.hr/debian/ unstable/main libtiff4 sparc 3.9.5-1 [192 kB]
+Get:70 http://debian.carnet.hr/debian/ unstable/main zip sparc 3.0-4 [335 kB]
+Get:71 http://debian.carnet.hr/debian/ unstable/main unzip sparc 6.0-5 [191 kB]
+Get:72 http://debian.carnet.hr/debian/ unstable/main xdg-utils all 1.1.0~rc1-2 [70.2 kB]
+Get:73 http://debian.carnet.hr/debian/ unstable/main tcl8.5 sparc 8.5.10-1 [1599 kB]
+Get:74 http://debian.carnet.hr/debian/ unstable/main tk8.5 sparc 8.5.10-1 [1143 kB]
+Get:75 http://debian.carnet.hr/debian/ unstable/main r-base-core sparc 2.13.1-1 [15.1 MB]
+Get:76 http://debian.carnet.hr/debian/ unstable/main r-base-dev all 2.13.1-1 [3490 B]
debconf: delaying package configuration, since apt-utils is not installed
-Fetched 49.0 MB in 31s (1548 kB/s)
+Fetched 49.9 MB in 32s (1548 kB/s)
+Selecting previously deselected package libpipeline1.
+(Reading database ... 11000 files and directories currently installed.)
+Unpacking libpipeline1 (from .../libpipeline1_1.2.0-3_sparc.deb) ...
+Selecting previously deselected package libpcre3.
+Unpacking libpcre3 (from .../libpcre3_8.12-4_sparc.deb) ...
+Selecting previously deselected package libdatrie1.
+Unpacking libdatrie1 (from .../libdatrie1_0.2.4-3_sparc.deb) ...
+Selecting previously deselected package libexpat1.
+Unpacking libexpat1 (from .../libexpat1_2.0.1-7_sparc.deb) ...
+Selecting previously deselected package libfreetype6.
+Unpacking libfreetype6 (from .../libfreetype6_2.4.6-1_sparc.deb) ...
+Selecting previously deselected package ucf.
+Unpacking ucf (from .../ucf_3.0025+nmu2_all.deb) ...
+Moving old data out of the way
+Selecting previously deselected package ttf-dejavu-core.
+Unpacking ttf-dejavu-core (from .../ttf-dejavu-core_2.33-1_all.deb) ...
+Selecting previously deselected package fontconfig-config.
+Unpacking fontconfig-config (from .../fontconfig-config_2.8.0-3_all.deb) ...
+Selecting previously deselected package libfontconfig1.
+Unpacking libfontconfig1 (from .../libfontconfig1_2.8.0-3_sparc.deb) ...
+Selecting previously deselected package libgfortran3.
+Unpacking libgfortran3 (from .../libgfortran3_4.6.1-6_sparc.deb) ...
+Selecting previously deselected package x11-common.
+Unpacking x11-common (from .../x11-common_1%3a7.6+7_all.deb) ...
+Selecting previously deselected package libice6.
+Unpacking libice6 (from .../libice6_2%3a1.0.7-2_sparc.deb) ...
+Selecting previously deselected package libpixman-1-0.
+Unpacking libpixman-1-0 (from .../libpixman-1-0_0.22.2-1_sparc.deb) ...
+Selecting previously deselected package libpng12-0.
+Unpacking libpng12-0 (from .../libpng12-0_1.2.46-3_sparc.deb) ...
+Selecting previously deselected package libxau6.
+Unpacking libxau6 (from .../libxau6_1%3a1.0.6-3_sparc.deb) ...
+Selecting previously deselected package libxdmcp6.
+Unpacking libxdmcp6 (from .../libxdmcp6_1%3a1.1.0-3_sparc.deb) ...
+Selecting previously deselected package libxcb1.
+Unpacking libxcb1 (from .../libxcb1_1.7-3_sparc.deb) ...
+Selecting previously deselected package libx11-data.
+Unpacking libx11-data (from .../libx11-data_2%3a1.4.4-1_all.deb) ...
+Selecting previously deselected package libx11-6.
+Unpacking libx11-6 (from .../libx11-6_2%3a1.4.4-1_sparc.deb) ...
+Selecting previously deselected package libxcb-render0.
+Unpacking libxcb-render0 (from .../libxcb-render0_1.7-3_sparc.deb) ...
+Selecting previously deselected package libxcb-shm0.
+Unpacking libxcb-shm0 (from .../libxcb-shm0_1.7-3_sparc.deb) ...
+Selecting previously deselected package libxrender1.
+Unpacking libxrender1 (from .../libxrender1_1%3a0.9.6-2_sparc.deb) ...
+Selecting previously deselected package libcairo2.
+Unpacking libcairo2 (from .../libcairo2_1.10.2-6.1_sparc.deb) ...
+Selecting previously deselected package libglib2.0-0.
+Unpacking libglib2.0-0 (from .../libglib2.0-0_2.28.6-1_sparc.deb) ...
+Selecting previously deselected package libthai-data.
+Unpacking libthai-data (from .../libthai-data_0.1.15-2_all.deb) ...
+Selecting previously deselected package libthai0.
+Unpacking libthai0 (from .../libthai0_0.1.15-2_sparc.deb) ...
+Selecting previously deselected package libxft2.
+Unpacking libxft2 (from .../libxft2_2.2.0-3_sparc.deb) ...
+Selecting previously deselected package fontconfig.
+Unpacking fontconfig (from .../fontconfig_2.8.0-3_sparc.deb) ...
+Selecting previously deselected package libpango1.0-0.
+Unpacking libpango1.0-0 (from .../libpango1.0-0_1.28.4-2_sparc.deb) ...
+Selecting previously deselected package libpcrecpp0.
+Unpacking libpcrecpp0 (from .../libpcrecpp0_8.12-4_sparc.deb) ...
+Selecting previously deselected package libsm6.
+Unpacking libsm6 (from .../libsm6_2%3a1.2.0-2_sparc.deb) ...
+Selecting previously deselected package libxext6.
+Unpacking libxext6 (from .../libxext6_2%3a1.3.0-3_sparc.deb) ...
+Selecting previously deselected package libxss1.
+Unpacking libxss1 (from .../libxss1_1%3a1.2.1-2_sparc.deb) ...
+Selecting previously deselected package libxt6.
+Unpacking libxt6 (from .../libxt6_1%3a1.1.1-2_sparc.deb) ...
Selecting previously deselected package bsdmainutils.
-(Reading database ... 10815 files and directories currently installed.)
-Unpacking bsdmainutils (from .../bsdmainutils_8.2.2_sparc.deb) ...
+Unpacking bsdmainutils (from .../bsdmainutils_8.2.3_sparc.deb) ...
Selecting previously deselected package groff-base.
-Unpacking groff-base (from .../groff-base_1.21-5_sparc.deb) ...
-Selecting previously deselected package libpipeline1.
-Unpacking libpipeline1 (from .../libpipeline1_1.2.0-2_sparc.deb) ...
+Unpacking groff-base (from .../groff-base_1.21-6_sparc.deb) ...
Selecting previously deselected package man-db.
-Unpacking man-db (from .../man-db_2.6.0.2-1_sparc.deb) ...
+Unpacking man-db (from .../man-db_2.6.0.2-2_sparc.deb) ...
Selecting previously deselected package libmagic1.
Unpacking libmagic1 (from .../libmagic1_5.04-5+b1_sparc.deb) ...
Selecting previously deselected package file.
Unpacking file (from .../file_5.04-5+b1_sparc.deb) ...
Selecting previously deselected package gettext-base.
-Unpacking gettext-base (from .../gettext-base_0.18.1.1-3_sparc.deb) ...
-Selecting previously deselected package libpcre3.
-Unpacking libpcre3 (from .../libpcre3_8.12-3_sparc.deb) ...
+Unpacking gettext-base (from .../gettext-base_0.18.1.1-4_sparc.deb) ...
Selecting previously deselected package libxml2.
-Unpacking libxml2 (from .../libxml2_2.7.8.dfsg-2+b1_sparc.deb) ...
-Selecting previously deselected package ucf.
-Unpacking ucf (from .../ucf_3.0025+nmu2_all.deb) ...
-Moving old data out of the way
+Unpacking libxml2 (from .../libxml2_2.7.8.dfsg-4_sparc.deb) ...
Selecting previously deselected package html2text.
Unpacking html2text (from .../html2text_1.3.2a-15_sparc.deb) ...
-Selecting previously deselected package libglib2.0-0.
-Unpacking libglib2.0-0 (from .../libglib2.0-0_2.28.6-1_sparc.deb) ...
Selecting previously deselected package libcroco3.
Unpacking libcroco3 (from .../libcroco3_0.6.2-1_sparc.deb) ...
Selecting previously deselected package libunistring0.
Unpacking libunistring0 (from .../libunistring0_0.9.3-4_sparc.deb) ...
Selecting previously deselected package gettext.
-Unpacking gettext (from .../gettext_0.18.1.1-3_sparc.deb) ...
+Unpacking gettext (from .../gettext_0.18.1.1-4_sparc.deb) ...
Selecting previously deselected package intltool-debian.
Unpacking intltool-debian (from .../intltool-debian_0.35.0+20060710.1_all.deb) ...
Selecting previously deselected package po-debconf.
Unpacking po-debconf (from .../po-debconf_1.0.16+nmu1_all.deb) ...
Selecting previously deselected package debhelper.
-Unpacking debhelper (from .../debhelper_8.1.6_all.deb) ...
+Unpacking debhelper (from .../debhelper_8.9.4_all.deb) ...
Selecting previously deselected package cdbs.
-Unpacking cdbs (from .../archives/cdbs_0.4.94_all.deb) ...
+Unpacking cdbs (from .../archives/cdbs_0.4.96_all.deb) ...
Selecting previously deselected package dpatch.
Unpacking dpatch (from .../archives/dpatch_2.0.31_all.deb) ...
-Selecting previously deselected package libexpat1.
-Unpacking libexpat1 (from .../libexpat1_2.0.1-7_sparc.deb) ...
-Selecting previously deselected package libfreetype6.
-Unpacking libfreetype6 (from .../libfreetype6_2.4.4-1_sparc.deb) ...
-Selecting previously deselected package ttf-dejavu-core.
-Unpacking ttf-dejavu-core (from .../ttf-dejavu-core_2.33-1_all.deb) ...
-Selecting previously deselected package fontconfig-config.
-Unpacking fontconfig-config (from .../fontconfig-config_2.8.0-2.2_all.deb) ...
-Selecting previously deselected package libfontconfig1.
-Unpacking libfontconfig1 (from .../libfontconfig1_2.8.0-2.2_sparc.deb) ...
-Selecting previously deselected package fontconfig.
-Unpacking fontconfig (from .../fontconfig_2.8.0-2.2_sparc.deb) ...
-Selecting previously deselected package libgfortran3.
-Unpacking libgfortran3 (from .../libgfortran3_4.6.0-10_sparc.deb) ...
-Selecting previously deselected package gfortran-4.4.
-Unpacking gfortran-4.4 (from .../gfortran-4.4_4.4.6-3_sparc.deb) ...
+Selecting previously deselected package gfortran-4.6.
+Unpacking gfortran-4.6 (from .../gfortran-4.6_4.6.1-6_sparc.deb) ...
Selecting previously deselected package gfortran.
-Unpacking gfortran (from .../gfortran_4%3a4.4.5-9_sparc.deb) ...
+Unpacking gfortran (from .../gfortran_4%3a4.6.1-2_sparc.deb) ...
Selecting previously deselected package libblas3gf.
-Unpacking libblas3gf (from .../libblas3gf_1.2-8_sparc.deb) ...
+Unpacking libblas3gf (from .../libblas3gf_1.2.20110419-2_sparc.deb) ...
Selecting previously deselected package libblas-dev.
-Unpacking libblas-dev (from .../libblas-dev_1.2-8_sparc.deb) ...
+Unpacking libblas-dev (from .../libblas-dev_1.2.20110419-2_sparc.deb) ...
Selecting previously deselected package libbz2-dev.
Unpacking libbz2-dev (from .../libbz2-dev_1.0.5-6_sparc.deb) ...
-Selecting previously deselected package libpixman-1-0.
-Unpacking libpixman-1-0 (from .../libpixman-1-0_0.21.8-1_sparc.deb) ...
-Selecting previously deselected package libpng12-0.
-Unpacking libpng12-0 (from .../libpng12-0_1.2.44-2_sparc.deb) ...
-Selecting previously deselected package libxau6.
-Unpacking libxau6 (from .../libxau6_1%3a1.0.6-1_sparc.deb) ...
-Selecting previously deselected package libxdmcp6.
-Unpacking libxdmcp6 (from .../libxdmcp6_1%3a1.1.0-1_sparc.deb) ...
-Selecting previously deselected package libxcb1.
-Unpacking libxcb1 (from .../libxcb1_1.7-2_sparc.deb) ...
-Selecting previously deselected package libx11-data.
-Unpacking libx11-data (from .../libx11-data_2%3a1.4.3-1_all.deb) ...
-Selecting previously deselected package libx11-6.
-Unpacking libx11-6 (from .../libx11-6_2%3a1.4.3-1_sparc.deb) ...
-Selecting previously deselected package libxcb-render0.
-Unpacking libxcb-render0 (from .../libxcb-render0_1.7-2_sparc.deb) ...
-Selecting previously deselected package libxcb-shm0.
-Unpacking libxcb-shm0 (from .../libxcb-shm0_1.7-2_sparc.deb) ...
-Selecting previously deselected package libxrender1.
-Unpacking libxrender1 (from .../libxrender1_1%3a0.9.6-1_sparc.deb) ...
-Selecting previously deselected package libcairo2.
-Unpacking libcairo2 (from .../libcairo2_1.10.2-6_sparc.deb) ...
-Selecting previously deselected package libdatrie1.
-Unpacking libdatrie1 (from .../libdatrie1_0.2.4-2_sparc.deb) ...
-Selecting previously deselected package x11-common.
-Unpacking x11-common (from .../x11-common_1%3a7.6+6_all.deb) ...
-Selecting previously deselected package libice6.
-Unpacking libice6 (from .../libice6_2%3a1.0.7-1_sparc.deb) ...
Selecting previously deselected package libjpeg62.
-Unpacking libjpeg62 (from .../libjpeg62_6b1-1_sparc.deb) ...
-Selecting previously deselected package libjpeg62-dev.
-Unpacking libjpeg62-dev (from .../libjpeg62-dev_6b1-1_sparc.deb) ...
+Unpacking libjpeg62 (from .../libjpeg62_6b1-2_sparc.deb) ...
+Selecting previously deselected package libjpeg8.
+Unpacking libjpeg8 (from .../libjpeg8_8c-2_sparc.deb) ...
+Selecting previously deselected package libjpeg8-dev.
+Unpacking libjpeg8-dev (from .../libjpeg8-dev_8c-2_sparc.deb) ...
Selecting previously deselected package liblapack3gf.
-Unpacking liblapack3gf (from .../liblapack3gf_3.3.0-4_sparc.deb) ...
+Unpacking liblapack3gf (from .../liblapack3gf_3.3.1-1_sparc.deb) ...
Selecting previously deselected package liblapack-dev.
-Unpacking liblapack-dev (from .../liblapack-dev_3.3.0-4_sparc.deb) ...
+Unpacking liblapack-dev (from .../liblapack-dev_3.3.1-1_sparc.deb) ...
Selecting previously deselected package libncurses5-dev.
Unpacking libncurses5-dev (from .../libncurses5-dev_5.9-1_sparc.deb) ...
-Selecting previously deselected package libthai-data.
-Unpacking libthai-data (from .../libthai-data_0.1.15-1_all.deb) ...
-Selecting previously deselected package libthai0.
-Unpacking libthai0 (from .../libthai0_0.1.15-1_sparc.deb) ...
-Selecting previously deselected package libxft2.
-Unpacking libxft2 (from .../libxft2_2.2.0-2_sparc.deb) ...
-Selecting previously deselected package libpango1.0-0.
-Unpacking libpango1.0-0 (from .../libpango1.0-0_1.28.3-6_sparc.deb) ...
Selecting previously deselected package libpaper1.
Unpacking libpaper1 (from .../libpaper1_1.1.24+nmu1_sparc.deb) ...
Selecting previously deselected package libpaper-utils.
Unpacking libpaper-utils (from .../libpaper-utils_1.1.24+nmu1_sparc.deb) ...
-Selecting previously deselected package libpcrecpp0.
-Unpacking libpcrecpp0 (from .../libpcrecpp0_8.12-3_sparc.deb) ...
Selecting previously deselected package libpcre3-dev.
-Unpacking libpcre3-dev (from .../libpcre3-dev_8.12-3_sparc.deb) ...
+Unpacking libpcre3-dev (from .../libpcre3-dev_8.12-4_sparc.deb) ...
Selecting previously deselected package zlib1g-dev.
Unpacking zlib1g-dev (from .../zlib1g-dev_1%3a1.2.3.4.dfsg-3_sparc.deb) ...
Selecting previously deselected package libpng12-dev.
-Unpacking libpng12-dev (from .../libpng12-dev_1.2.44-2_sparc.deb) ...
+Unpacking libpng12-dev (from .../libpng12-dev_1.2.46-3_sparc.deb) ...
Selecting previously deselected package libreadline6-dev.
Unpacking libreadline6-dev (from .../libreadline6-dev_6.2-2_sparc.deb) ...
Selecting previously deselected package libreadline-dev.
Unpacking libreadline-dev (from .../libreadline-dev_6.2-2_sparc.deb) ...
-Selecting previously deselected package libsm6.
-Unpacking libsm6 (from .../libsm6_2%3a1.2.0-1_sparc.deb) ...
Selecting previously deselected package libtiff4.
Unpacking libtiff4 (from .../libtiff4_3.9.5-1_sparc.deb) ...
-Selecting previously deselected package libxext6.
-Unpacking libxext6 (from .../libxext6_2%3a1.3.0-1_sparc.deb) ...
-Selecting previously deselected package libxss1.
-Unpacking libxss1 (from .../libxss1_1%3a1.2.1-1_sparc.deb) ...
-Selecting previously deselected package libxt6.
-Unpacking libxt6 (from .../libxt6_1%3a1.1.1-1_sparc.deb) ...
Selecting previously deselected package zip.
-Unpacking zip (from .../archives/zip_3.0-3_sparc.deb) ...
+Unpacking zip (from .../archives/zip_3.0-4_sparc.deb) ...
Selecting previously deselected package unzip.
-Unpacking unzip (from .../archives/unzip_6.0-4_sparc.deb) ...
+Unpacking unzip (from .../archives/unzip_6.0-5_sparc.deb) ...
Selecting previously deselected package xdg-utils.
Unpacking xdg-utils (from .../xdg-utils_1.1.0~rc1-2_all.deb) ...
Selecting previously deselected package tcl8.5.
-Unpacking tcl8.5 (from .../tcl8.5_8.5.9-2_sparc.deb) ...
+Unpacking tcl8.5 (from .../tcl8.5_8.5.10-1_sparc.deb) ...
Selecting previously deselected package tk8.5.
-Unpacking tk8.5 (from .../tk8.5_8.5.9-2_sparc.deb) ...
+Unpacking tk8.5 (from .../tk8.5_8.5.10-1_sparc.deb) ...
Selecting previously deselected package r-base-core.
-Unpacking r-base-core (from .../r-base-core_2.13.0-2_sparc.deb) ...
+Unpacking r-base-core (from .../r-base-core_2.13.1-1_sparc.deb) ...
Selecting previously deselected package r-base-dev.
-Unpacking r-base-dev (from .../r-base-dev_2.13.0-2_all.deb) ...
-Setting up bsdmainutils (8.2.2) ...
+Unpacking r-base-dev (from .../r-base-dev_2.13.1-1_all.deb) ...
+Setting up libpipeline1 (1.2.0-3) ...
+Setting up libpcre3 (8.12-4) ...
+Setting up libdatrie1 (0.2.4-3) ...
+Setting up libexpat1 (2.0.1-7) ...
+Setting up libfreetype6 (2.4.6-1) ...
+Setting up ucf (3.0025+nmu2) ...
+Setting up ttf-dejavu-core (2.33-1) ...
+Setting up fontconfig-config (2.8.0-3) ...
+Setting up libfontconfig1 (2.8.0-3) ...
+Setting up libgfortran3 (4.6.1-6) ...
+Setting up x11-common (1:7.6+7) ...
+All runlevel operations denied by policy
+invoke-rc.d: policy-rc.d denied execution of start.
+Setting up libice6 (2:1.0.7-2) ...
+Setting up libpixman-1-0 (0.22.2-1) ...
+Setting up libpng12-0 (1.2.46-3) ...
+Setting up libxau6 (1:1.0.6-3) ...
+Setting up libxdmcp6 (1:1.1.0-3) ...
+Setting up libxcb1 (1.7-3) ...
+Setting up libx11-data (2:1.4.4-1) ...
+Setting up libx11-6 (2:1.4.4-1) ...
+Setting up libxcb-render0 (1.7-3) ...
+Setting up libxcb-shm0 (1.7-3) ...
+Setting up libxrender1 (1:0.9.6-2) ...
+Setting up libcairo2 (1.10.2-6.1) ...
+Setting up libglib2.0-0 (2.28.6-1) ...
+No schema files found: doing nothing.
+Setting up libthai-data (0.1.15-2) ...
+Setting up libthai0 (0.1.15-2) ...
+Setting up libxft2 (2.2.0-3) ...
+Setting up fontconfig (2.8.0-3) ...
+Cleaning up old fontconfig caches... done.
+Regenerating fonts cache... done.
+Setting up libpango1.0-0 (1.28.4-2) ...
+Setting up libpcrecpp0 (8.12-4) ...
+Setting up libsm6 (2:1.2.0-2) ...
+Setting up libxext6 (2:1.3.0-3) ...
+Setting up libxss1 (1:1.2.1-2) ...
+Setting up libxt6 (1:1.1.1-2) ...
+Setting up bsdmainutils (8.2.3) ...
update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode.
update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode.
-Setting up groff-base (1.21-5) ...
-Setting up libpipeline1 (1.2.0-2) ...
-Setting up man-db (2.6.0.2-1) ...
+Setting up groff-base (1.21-6) ...
+Setting up man-db (2.6.0.2-2) ...
Building database of manual pages ...
Setting up libmagic1 (5.04-5+b1) ...
Setting up file (5.04-5+b1) ...
-Setting up gettext-base (0.18.1.1-3) ...
-Setting up libpcre3 (8.12-3) ...
-Setting up libxml2 (2.7.8.dfsg-2+b1) ...
-Setting up ucf (3.0025+nmu2) ...
+Setting up gettext-base (0.18.1.1-4) ...
+Setting up libxml2 (2.7.8.dfsg-4) ...
Setting up html2text (1.3.2a-15) ...
-Setting up libglib2.0-0 (2.28.6-1) ...
-No schema files found: doing nothing.
Setting up libcroco3 (0.6.2-1) ...
Setting up libunistring0 (0.9.3-4) ...
-Setting up gettext (0.18.1.1-3) ...
+Setting up gettext (0.18.1.1-4) ...
Setting up intltool-debian (0.35.0+20060710.1) ...
Setting up po-debconf (1.0.16+nmu1) ...
-Setting up debhelper (8.1.6) ...
-Setting up cdbs (0.4.94) ...
+Setting up debhelper (8.9.4) ...
+Setting up cdbs (0.4.96) ...
Setting up dpatch (2.0.31) ...
-Setting up libexpat1 (2.0.1-7) ...
-Setting up libfreetype6 (2.4.4-1) ...
-Setting up ttf-dejavu-core (2.33-1) ...
-Setting up fontconfig-config (2.8.0-2.2) ...
-Setting up libfontconfig1 (2.8.0-2.2) ...
-Setting up fontconfig (2.8.0-2.2) ...
-Cleaning up old fontconfig caches... done.
-Regenerating fonts cache... done.
-Setting up libgfortran3 (4.6.0-10) ...
-Setting up gfortran-4.4 (4.4.6-3) ...
-Setting up gfortran (4:4.4.5-9) ...
+Setting up gfortran-4.6 (4.6.1-6) ...
+Setting up gfortran (4:4.6.1-2) ...
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode.
-Setting up libblas3gf (1.2-8) ...
+Setting up libblas3gf (1.2.20110419-2) ...
update-alternatives: using /usr/lib/libblas/libblas.so.3gf to provide /usr/lib/libblas.so.3gf (libblas.so.3gf) in auto mode.
-Setting up libblas-dev (1.2-8) ...
+Setting up libblas-dev (1.2.20110419-2) ...
update-alternatives: using /usr/lib/libblas/libblas.so to provide /usr/lib/libblas.so (libblas.so) in auto mode.
Setting up libbz2-dev (1.0.5-6) ...
-Setting up libpixman-1-0 (0.21.8-1) ...
-Setting up libpng12-0 (1.2.44-2) ...
-Setting up libxau6 (1:1.0.6-1) ...
-Setting up libxdmcp6 (1:1.1.0-1) ...
-Setting up libxcb1 (1.7-2) ...
-Setting up libx11-data (2:1.4.3-1) ...
-Setting up libx11-6 (2:1.4.3-1) ...
-Setting up libxcb-render0 (1.7-2) ...
-Setting up libxcb-shm0 (1.7-2) ...
-Setting up libxrender1 (1:0.9.6-1) ...
-Setting up libcairo2 (1.10.2-6) ...
-Setting up libdatrie1 (0.2.4-2) ...
-Setting up x11-common (1:7.6+6) ...
-All runlevel operations denied by policy
-invoke-rc.d: policy-rc.d denied execution of start.
-Setting up libice6 (2:1.0.7-1) ...
-Setting up libjpeg62 (6b1-1) ...
-Setting up libjpeg62-dev (6b1-1) ...
-Setting up liblapack3gf (3.3.0-4) ...
+Setting up libjpeg62 (6b1-2) ...
+Setting up libjpeg8 (8c-2) ...
+Setting up libjpeg8-dev (8c-2) ...
+Setting up liblapack3gf (3.3.1-1) ...
update-alternatives: using /usr/lib/lapack/liblapack.so.3gf to provide /usr/lib/liblapack.so.3gf (liblapack.so.3gf) in auto mode.
-Setting up liblapack-dev (3.3.0-4) ...
+Setting up liblapack-dev (3.3.1-1) ...
update-alternatives: using /usr/lib/lapack/liblapack.so to provide /usr/lib/liblapack.so (liblapack.so) in auto mode.
Setting up libncurses5-dev (5.9-1) ...
-Setting up libthai-data (0.1.15-1) ...
-Setting up libthai0 (0.1.15-1) ...
-Setting up libxft2 (2.2.0-2) ...
-Setting up libpango1.0-0 (1.28.3-6) ...
Setting up libpaper1 (1.1.24+nmu1) ...
Creating config file /etc/papersize with new version
Setting up libpaper-utils (1.1.24+nmu1) ...
-Setting up libpcrecpp0 (8.12-3) ...
-Setting up libpcre3-dev (8.12-3) ...
+Setting up libpcre3-dev (8.12-4) ...
Setting up zlib1g-dev (1:1.2.3.4.dfsg-3) ...
-Setting up libpng12-dev (1.2.44-2) ...
+Setting up libpng12-dev (1.2.46-3) ...
Setting up libreadline6-dev (6.2-2) ...
Setting up libreadline-dev (6.2-2) ...
-Setting up libsm6 (2:1.2.0-1) ...
Setting up libtiff4 (3.9.5-1) ...
-Setting up libxext6 (2:1.3.0-1) ...
-Setting up libxss1 (1:1.2.1-1) ...
-Setting up libxt6 (1:1.1.1-1) ...
-Setting up zip (3.0-3) ...
-Setting up unzip (6.0-4) ...
+Setting up zip (3.0-4) ...
+Setting up unzip (6.0-5) ...
Setting up xdg-utils (1.1.0~rc1-2) ...
-Setting up tcl8.5 (8.5.9-2) ...
+Setting up tcl8.5 (8.5.10-1) ...
update-alternatives: using /usr/bin/tclsh8.5 to provide /usr/bin/tclsh (tclsh) in auto mode.
-Setting up tk8.5 (8.5.9-2) ...
+Setting up tk8.5 (8.5.10-1) ...
update-alternatives: using /usr/bin/wish8.5 to provide /usr/bin/wish (wish) in auto mode.
-Setting up r-base-core (2.13.0-2) ...
+Setting up r-base-core (2.13.1-1) ...
Setting R_PAPERSIZE_USER default to 'a4'
Creating config file /etc/R/Renviron with new version
-Setting up r-base-dev (2.13.0-2) ...
+Setting up r-base-dev (2.13.1-1) ...
Removing negative dependencies:
Reading package lists...
Building dependency tree...
Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
+0 upgraded, 0 newly installed, 0 to remove and 3 not upgraded.
Checking correctness of dependencies...
-Kernel: Linux 2.6.32-bpo.5-sparc64-smp sparc (sparc64)
-Toolchain package versions: binutils_2.21.51.20110523-1 dpkg-dev_1.16.0.3 g++-4.4_4.4.6-3 gcc-4.4_4.4.6-3 libc6-dev_2.13-4 libstdc++6_4.6.0-10 libstdc++6-4.4-dev_4.4.6-3 linux-libc-dev_2.6.39-1
-Package versions: apt_0.8.14.1 base-files_6.4 base-passwd_3.5.22+b1 bash_4.1-3 binutils_2.21.51.20110523-1 bsdmainutils_8.2.2 bsdutils_1:2.17.2-9.1 build-essential_11.5 bzip2_1.0.5-6 cdbs_0.4.94 coreutils_8.5-1 cpp_4:4.4.5-9 cpp-4.4_4.4.6-3 dash_0.5.5.1-7.4 debconf_1.5.39 debfoster_2.7-1.1 debhelper_8.1.6 debian-archive-keyring_2010.08.28 debianutils_4.0.1 diffutils_1:3.0-1 dpatch_2.0.31 dpkg_1.16.0.3 dpkg-dev_1.16.0.3 e2fslibs_1.41.12-4 e2fsprogs_1.41.12-4 fakeroot_1.15.1-1 file_5.04-5+b1 findutils_4.4.2-1+b2 fontconfig_2.8.0-2.2 fontconfig-config_2.8.0-2.2 g++_4:4.4.5-9 g++-4.4_4.4.6-3 gcc_4:4.4.5-9 gcc-4.4_4.4.6-3 gcc-4.4-base_4.4.6-3 gcc-4.6-base_4.6.0-10 gettext_0.18.1.1-3 gettext-base_0.18.1.1-3 gfortran_4:4.4.5-9 gfortran-4.4_4.4.6-3 gnupg_1.4.11-3 gpgv_1.4.11-3 grep_2.8-2 groff-base_1.21-5 gzip_1.3.12-9 hostname_3.06 html2text_1.3.2a-15 initscripts_2.88dsf-13.7 insserv_1.14.0-2.1 intltool-debian_0.35.0+20060710.1 libacl1_2.2.49-5 libattr1_1:2.4.44-3 libblas-dev_1.2-8 libblas3gf_1.2-8 libblkid1_2.17.2-9.1 libbz2-1.0_1.0.5-6 libbz2-dev_1.0.5-6 libc-bin_2.13-4 libc-dev-bin_2.13-4 libc6_2.13-4 libc6-dev_2.13-4 libc6-dev-sparc64_2.13-4 libc6-sparc64_2.13-4 libcairo2_1.10.2-6 libcomerr2_1.41.12-4 libcroco3_0.6.2-1 libdatrie1_0.2.4-2 libdb5.1_5.1.25-10 libdpkg-perl_1.16.0.3 libexpat1_2.0.1-7 libfontconfig1_2.8.0-2.2 libfreetype6_2.4.4-1 libgc1c2_1:7.1-8 libgcc1_1:4.6.0-10 libgdbm3_1.8.3-9+b1 libgfortran3_4.6.0-10 libglib2.0-0_2.28.6-1 libgmp10_2:5.0.1+dfsg-7 libgomp1_4.6.0-10 libice6_2:1.0.7-1 libjpeg62_6b1-1 libjpeg62-dev_6b1-1 liblapack-dev_3.3.0-4 liblapack3gf_3.3.0-4 liblzma2_5.0.0-2 libmagic1_5.04-5+b1 libmpfr4_3.0.1-3 libncurses5_5.9-1 libncurses5-dev_5.9-1 libpam-modules_1.1.2-3 libpam-runtime_1.1.2-3 libpam0g_1.1.2-3 libpango1.0-0_1.28.3-6 libpaper-utils_1.1.24+nmu1 libpaper1_1.1.24+nmu1 libpcre3_8.12-3 libpcre3-dev_8.12-3 libpcrecpp0_8.12-3 libpipeline1_1.2.0-2 libpixman-1-0_0.21.8-1 libpng12-0_1.2.44-2 libpng12-dev_1.2.44-2 libreadline-dev_6.2-2 libreadline6_6.2-2 libreadline6-dev_6.2-2 libselinux1_2.0.98-1+b1 libsepol1_2.0.42-1 libsm6_2:1.2.0-1 libss2_1.41.12-4 libstdc++6_4.6.0-10 libstdc++6-4.4-dev_4.4.6-3 libthai-data_0.1.15-1 libthai0_0.1.15-1 libtiff4_3.9.5-1 libtimedate-perl_1.2000-1 libunistring0_0.9.3-4 libusb-0.1-4_2:0.1.12-17 libuuid1_2.17.2-9.1 libx11-6_2:1.4.3-1 libx11-data_2:1.4.3-1 libxau6_1:1.0.6-1 libxcb-render0_1.7-2 libxcb-shm0_1.7-2 libxcb1_1.7-2 libxdmcp6_1:1.1.0-1 libxext6_2:1.3.0-1 libxft2_2.2.0-2 libxml2_2.7.8.dfsg-2+b1 libxrender1_1:0.9.6-1 libxss1_1:1.2.1-1 libxt6_1:1.1.1-1 linux-libc-dev_2.6.39-1 login_1:4.1.4.2+svn3283-3 lsb-base_3.2-27 make_3.81-8.1 man-db_2.6.0.2-1 mawk_1.3.3-15+b1 mount_2.17.2-9.1 ncurses-base_5.9-1 ncurses-bin_5.9-1 passwd_1:4.1.4.2+svn3283-3 patch_2.6.1-2 perl_5.12.3-7 perl-base_5.12.3-7 perl-modules_5.12.3-7 po-debconf_1.0.16+nmu1 r-base-core_2.13.0-2 r-base-dev_2.13.0-2 readline-common_6.2-2 sed_4.2.1-9 sensible-utils_0.0.6 sudo_1.7.4p6-1 sysv-rc_2.88dsf-13.7 sysvinit_2.88dsf-13.7 sysvinit-utils_2.88dsf-13.7 tar_1.25-3 tcl8.5_8.5.9-2 tk8.5_8.5.9-2 ttf-dejavu-core_2.33-1 tzdata_2011g-1 ucf_3.0025+nmu2 unzip_6.0-4 util-linux_2.17.2-9.1 x11-common_1:7.6+6 xdg-utils_1.1.0~rc1-2 xz-utils_5.0.0-2 zip_3.0-3 zlib1g_1:1.2.3.4.dfsg-3 zlib1g-dev_1:1.2.3.4.dfsg-3
+Kernel: Linux 2.6.32-5-sparc64-smp sparc (sparc64)
+Toolchain package versions: binutils_2.21.53.20110805-1 dpkg-dev_1.16.0.3 g++-4.6_4.6.1-6 gcc-4.6_4.6.1-6 libc6-dev_2.13-16 libstdc++6_4.6.1-6 libstdc++6-4.6-dev_4.6.1-6 linux-libc-dev_3.0.0-1
+Package versions: apt_0.8.15.5 base-files_6.5 base-passwd_3.5.23 bash_4.1-3 binutils_2.21.53.20110805-1 bsdmainutils_8.2.3 bsdutils_1:2.19.1-5 build-essential_11.5 bzip2_1.0.5-6 cdbs_0.4.96 coreutils_8.5-1 cpp_4:4.6.1-2 cpp-4.6_4.6.1-6 dash_0.5.5.1-7.4 debconf_1.5.41 debfoster_2.7-1.1 debhelper_8.9.4 debian-archive-keyring_2010.08.28 debianutils_4.0.2 diffutils_1:3.0-1 dpatch_2.0.31 dpkg_1.16.0.3 dpkg-dev_1.16.0.3 e2fslibs_1.42~WIP-2011-07-02-1 e2fsprogs_1.42~WIP-2011-07-02-1 fakeroot_1.16-1 file_5.04-5+b1 findutils_4.4.2-1+b2 fontconfig_2.8.0-3 fontconfig-config_2.8.0-3 g++_4:4.6.1-2 g++-4.6_4.6.1-6 gcc_4:4.6.1-2 gcc-4.6_4.6.1-6 gcc-4.6-base_4.6.1-6 gettext_0.18.1.1-4 gettext-base_0.18.1.1-4 gfortran_4:4.6.1-2 gfortran-4.6_4.6.1-6 gnupg_1.4.11-3 gpgv_1.4.11-3 grep_2.9-1 groff-base_1.21-6 gzip_1.4-1 hostname_3.06 html2text_1.3.2a-15 initscripts_2.88dsf-13.11 insserv_1.14.0-2.1 intltool-debian_0.35.0+20060710.1 libacl1_2.2.51-3 libattr1_1:2.4.46-3 libblas-dev_1.2.20110419-2 libblas3gf_1.2.20110419-2 libblkid1_2.19.1-5 libbz2-1.0_1.0.5-6 libbz2-dev_1.0.5-6 libc-bin_2.13-16 libc-dev-bin_2.13-16 libc6_2.13-16 libc6-dev_2.13-16 libc6-dev-sparc64_2.13-16 libc6-sparc64_2.13-16 libcairo2_1.10.2-6.1 libcloog-ppl0_0.15.9-3 libcomerr2_1.42~WIP-2011-07-02-1 libcroco3_0.6.2-1 libdatrie1_0.2.4-3 libdb5.1_5.1.25-11 libdpkg-perl_1.16.0.3 libexpat1_2.0.1-7 libfontconfig1_2.8.0-3 libfreetype6_2.4.6-1 libgc1c2_1:7.1-8 libgcc1_1:4.6.1-6 libgdbm3_1.8.3-10 libgfortran3_4.6.1-6 libglib2.0-0_2.28.6-1 libgmp10_2:5.0.1+dfsg-7 libgmpxx4ldbl_2:5.0.1+dfsg-7 libgomp1_4.6.1-6 libice6_2:1.0.7-2 libjpeg62_6b1-2 libjpeg8_8c-2 libjpeg8-dev_8c-2 liblapack-dev_3.3.1-1 liblapack3gf_3.3.1-1 liblzma2_5.0.0-2 libmagic1_5.04-5+b1 libmount1_2.19.1-5 libmpc2_0.9-3 libmpfr4_3.0.1-5 libncurses5_5.9-1 libncurses5-dev_5.9-1 libpam-modules_1.1.3-2 libpam-modules-bin_1.1.3-2 libpam-runtime_1.1.3-2 libpam0g_1.1.3-2 libpango1.0-0_1.28.4-2 libpaper-utils_1.1.24+nmu1 libpaper1_1.1.24+nmu1 libpcre3_8.12-4 libpcre3-dev_8.12-4 libpcrecpp0_8.12-4 libpipeline1_1.2.0-3 libpixman-1-0_0.22.2-1 libpng12-0_1.2.46-3 libpng12-dev_1.2.46-3 libppl-c4_0.11.2-4 libppl9_0.11.2-4 libpwl5_0.11.2-4 libreadline-dev_6.2-2 libreadline6_6.2-2 libreadline6-dev_6.2-2 libselinux1_2.0.98-1.1 libsepol1_2.0.42-1 libsm6_2:1.2.0-2 libss2_1.42~WIP-2011-07-02-1 libstdc++6_4.6.1-6 libstdc++6-4.6-dev_4.6.1-6 libthai-data_0.1.15-2 libthai0_0.1.15-2 libtiff4_3.9.5-1 libtimedate-perl_1.2000-1 libunistring0_0.9.3-4 libusb-0.1-4_2:0.1.12-18 libuuid1_2.19.1-5 libx11-6_2:1.4.4-1 libx11-data_2:1.4.4-1 libxau6_1:1.0.6-3 libxcb-render0_1.7-3 libxcb-shm0_1.7-3 libxcb1_1.7-3 libxdmcp6_1:1.1.0-3 libxext6_2:1.3.0-3 libxft2_2.2.0-3 libxml2_2.7.8.dfsg-4 libxrender1_1:0.9.6-2 libxss1_1:1.2.1-2 libxt6_1:1.1.1-2 linux-libc-dev_3.0.0-1 login_1:4.1.4.2+svn3283-3 lsb-base_3.2-27 make_3.81-8.1 man-db_2.6.0.2-2 mawk_1.3.3-15+b1 mount_2.19.1-5 multiarch-support_2.13-16 ncurses-base_5.9-1 ncurses-bin_5.9-1 passwd_1:4.1.4.2+svn3283-3 patch_2.6.1-2 perl_5.12.4-4 perl-base_5.12.4-4 perl-modules_5.12.4-4 po-debconf_1.0.16+nmu1 r-base-core_2.13.1-1 r-base-dev_2.13.1-1 readline-common_6.2-2 sed_4.2.1-9 sensible-utils_0.0.6 sudo_1.7.4p6-1 sysv-rc_2.88dsf-13.11 sysvinit_2.88dsf-13.11 sysvinit-utils_2.88dsf-13.11 tar_1.25-3 tcl8.5_8.5.10-1 tk8.5_8.5.10-1 ttf-dejavu-core_2.33-1 tzdata_2011h-3 ucf_3.0025+nmu2 unzip_6.0-5 util-linux_2.19.1-5 x11-common_1:7.6+7 xdg-utils_1.1.0~rc1-2 xz-utils_5.0.0-2 zip_3.0-4 zlib1g_1:1.2.3.4.dfsg-3 zlib1g-dev_1:1.2.3.4.dfsg-3
┌──────────────────────────────────────────────────────────────────────────────┐
│ Build │
@@ -544,14 +548,13 @@ Package versions: apt_0.8.14.1 base-files_6.4 base-passwd_3.5.22+b1 bash_4.1-3 b
Unpack source
─────────────
-Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/Source/Package.pm line 258.
gpgv: keyblock resource `/home/buildd/.gnupg/trustedkeys.gpg': file open error
-gpgv: Signature made Thu Jun 2 04:18:41 2011 UTC using RSA key ID 2295D502
+gpgv: Signature made Sun Aug 14 11:36:35 2011 UTC using RSA key ID 2295D502
gpgv: Can't check signature: public key not found
-dpkg-source: warning: failed to verify signature on ./r-bioc-limma_3.8.2-1.dsc
-dpkg-source: info: extracting r-bioc-limma in r-bioc-limma-3.8.2
-dpkg-source: info: unpacking r-bioc-limma_3.8.2.orig.tar.gz
-dpkg-source: info: applying r-bioc-limma_3.8.2-1.diff.gz
+dpkg-source: warning: failed to verify signature on ./r-bioc-limma_3.8.3-1.dsc
+dpkg-source: info: extracting r-bioc-limma in r-bioc-limma-3.8.3
+dpkg-source: info: unpacking r-bioc-limma_3.8.3.orig.tar.gz
+dpkg-source: info: applying r-bioc-limma_3.8.3-1.diff.gz
Check disc space
────────────────
@@ -560,33 +563,24 @@ Check disc space
dpkg-buildpackage
─────────────────
-Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
dpkg-buildpackage: export CFLAGS from dpkg-buildflags (origin: vendor): -g -O2
dpkg-buildpackage: export CPPFLAGS from dpkg-buildflags (origin: vendor):
dpkg-buildpackage: export CXXFLAGS from dpkg-buildflags (origin: vendor): -g -O2
dpkg-buildpackage: export FFLAGS from dpkg-buildflags (origin: vendor): -g -O2
dpkg-buildpackage: export LDFLAGS from dpkg-buildflags (origin: vendor):
dpkg-buildpackage: source package r-bioc-limma
-dpkg-buildpackage: source version 3.8.2-1
- dpkg-source --before-build r-bioc-limma-3.8.2
+dpkg-buildpackage: source version 3.8.3-1
+ dpkg-source --before-build r-bioc-limma-3.8.3
dpkg-buildpackage: host architecture sparc
fakeroot debian/rules clean
-Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
-Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
-Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
-Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
test -x debian/rules
dh_testroot
/usr/bin/make -f debian/rules reverse-config
-Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
-Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
-Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
-Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
-make[1]: Entering directory `/build/buildd-r-bioc-limma_3.8.2-1-sparc-7raOL5/r-bioc-limma-3.8.2'
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
+make[1]: Entering directory `/build/buildd-r-bioc-limma_3.8.3-1-sparc-6z69eX/r-bioc-limma-3.8.3'
make[1]: Nothing to be done for `reverse-config'.
-make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.8.2-1-sparc-7raOL5/r-bioc-limma-3.8.2'
+make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.8.3-1-sparc-6z69eX/r-bioc-limma-3.8.3'
if [ "reverse-patches" = "reverse-patches" ]; then rm -f debian/stamp-patched; fi
patches:
if [ "reverse-patches" != "reverse-patches" ]; then touch debian/stamp-patched; fi
@@ -603,41 +597,25 @@ if test -d src; then \
fi
rm -f config.log config.status
debian/rules build
-Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
-Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
-Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
-Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
test -x debian/rules
mkdir -p "."
/usr/bin/make -f debian/rules reverse-config
-Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
-Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
-Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
-Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
-make[1]: Entering directory `/build/buildd-r-bioc-limma_3.8.2-1-sparc-7raOL5/r-bioc-limma-3.8.2'
+make[1]: Entering directory `/build/buildd-r-bioc-limma_3.8.3-1-sparc-6z69eX/r-bioc-limma-3.8.3'
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
make[1]: Nothing to be done for `reverse-config'.
-make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.8.2-1-sparc-7raOL5/r-bioc-limma-3.8.2'
+make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.8.3-1-sparc-6z69eX/r-bioc-limma-3.8.3'
if [ "debian/stamp-patched" = "reverse-patches" ]; then rm -f debian/stamp-patched; fi
patches:
if [ "debian/stamp-patched" != "reverse-patches" ]; then touch debian/stamp-patched; fi
if [ "debian/stamp-patched" != "reverse-patches" ] ; then \
/usr/bin/make -f debian/rules update-config ; \
fi
-Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
-Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
-Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
-Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
-make[1]: Entering directory `/build/buildd-r-bioc-limma_3.8.2-1-sparc-7raOL5/r-bioc-limma-3.8.2'
+make[1]: Entering directory `/build/buildd-r-bioc-limma_3.8.3-1-sparc-6z69eX/r-bioc-limma-3.8.3'
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
make[1]: Nothing to be done for `update-config'.
-make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.8.2-1-sparc-7raOL5/r-bioc-limma-3.8.2'
+make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.8.3-1-sparc-6z69eX/r-bioc-limma-3.8.3'
fakeroot debian/rules binary-arch
-Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
-Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
-Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
-Use of uninitialized value $ENV{"HOME"} in concatenation (.) or string at /usr/share/perl5/Dpkg/BuildFlags.pm line 109.
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
test -x debian/rules
dh_testroot
@@ -646,24 +624,24 @@ dh_installdirs -A
mkdir -p "."
dh_installdirs usr/lib/R/site-library
if test -f /usr/bin/xvfb-run; then \
- xvfb-run \
- R CMD INSTALL -l /build/buildd-r-bioc-limma_3.8.2-1-sparc-7raOL5/r-bioc-limma-3.8.2/debian/r-bioc-limma/usr/lib/R/site-library --clean \
+ xvfb-run -a \
+ R CMD INSTALL -l /build/buildd-r-bioc-limma_3.8.3-1-sparc-6z69eX/r-bioc-limma-3.8.3/debian/r-bioc-limma/usr/lib/R/site-library --clean \
. ; \
else \
- R CMD INSTALL -l /build/buildd-r-bioc-limma_3.8.2-1-sparc-7raOL5/r-bioc-limma-3.8.2/debian/r-bioc-limma/usr/lib/R/site-library \
+ R CMD INSTALL -l /build/buildd-r-bioc-limma_3.8.3-1-sparc-6z69eX/r-bioc-limma-3.8.3/debian/r-bioc-limma/usr/lib/R/site-library \
--clean . ;\
fi
* installing *source* package 'limma' ...
** libs
-make[1]: Entering directory `/build/buildd-r-bioc-limma_3.8.2-1-sparc-7raOL5/r-bioc-limma-3.8.2/src'
+make[1]: Entering directory `/build/buildd-r-bioc-limma_3.8.3-1-sparc-6z69eX/r-bioc-limma-3.8.3/src'
gcc -I/usr/share/R/include -fPIC -std=gnu99 -O3 -pipe -g -c normexp.c -o normexp.o
normexp.c: In function 'fit_saddle_nelder_mead':
-normexp.c:153: warning: floating constant exceeds range of 'double'
+normexp.c:153:3: warning: floating constant exceeds range of 'double' [-Woverflow]
gcc -shared -o limma.so normexp.o -L/usr/lib/R/lib -lR
-make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.8.2-1-sparc-7raOL5/r-bioc-limma-3.8.2/src'
-make[1]: Entering directory `/build/buildd-r-bioc-limma_3.8.2-1-sparc-7raOL5/r-bioc-limma-3.8.2/src'
-make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.8.2-1-sparc-7raOL5/r-bioc-limma-3.8.2/src'
-installing to /build/buildd-r-bioc-limma_3.8.2-1-sparc-7raOL5/r-bioc-limma-3.8.2/debian/r-bioc-limma/usr/lib/R/site-library/limma/libs
+make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.8.3-1-sparc-6z69eX/r-bioc-limma-3.8.3/src'
+make[1]: Entering directory `/build/buildd-r-bioc-limma_3.8.3-1-sparc-6z69eX/r-bioc-limma-3.8.3/src'
+make[1]: Leaving directory `/build/buildd-r-bioc-limma_3.8.3-1-sparc-6z69eX/r-bioc-limma-3.8.3/src'
+installing to /build/buildd-r-bioc-limma_3.8.3-1-sparc-6z69eX/r-bioc-limma-3.8.3/debian/r-bioc-limma/usr/lib/R/site-library/limma/libs
** R
** inst
** preparing package for lazy loading
@@ -673,17 +651,17 @@ installing to /build/buildd-r-bioc-limma_3.8.2-1-sparc-7raOL5/r-bioc-limma-3.8.2
** testing if installed package can be loaded
* DONE (limma)
-rm -vf /build/buildd-r-bioc-limma_3.8.2-1-sparc-7raOL5/r-bioc-limma-3.8.2/debian/r-bioc-limma/usr/lib/R/site-library/R.css \
- /build/buildd-r-bioc-limma_3.8.2-1-sparc-7raOL5/r-bioc-limma-3.8.2/debian/r-bioc-limma/usr/lib/R/site-library/limma/COPYING \
- /build/buildd-r-bioc-limma_3.8.2-1-sparc-7raOL5/r-bioc-limma-3.8.2/debian/r-bioc-limma/usr/lib/R/site-library/limma/LICENSE.txt
+rm -vf /build/buildd-r-bioc-limma_3.8.3-1-sparc-6z69eX/r-bioc-limma-3.8.3/debian/r-bioc-limma/usr/lib/R/site-library/R.css \
+ /build/buildd-r-bioc-limma_3.8.3-1-sparc-6z69eX/r-bioc-limma-3.8.3/debian/r-bioc-limma/usr/lib/R/site-library/limma/COPYING \
+ /build/buildd-r-bioc-limma_3.8.3-1-sparc-6z69eX/r-bioc-limma-3.8.3/debian/r-bioc-limma/usr/lib/R/site-library/limma/LICENSE.txt
if test -f debian/overrides; then \
- install -d /build/buildd-r-bioc-limma_3.8.2-1-sparc-7raOL5/r-bioc-limma-3.8.2/debian/r-bioc-limma/usr/share/lintian/overrides ; \
+ install -d /build/buildd-r-bioc-limma_3.8.3-1-sparc-6z69eX/r-bioc-limma-3.8.3/debian/r-bioc-limma/usr/share/lintian/overrides ; \
install -m 0644 debian/overrides \
- /build/buildd-r-bioc-limma_3.8.2-1-sparc-7raOL5/r-bioc-limma-3.8.2/debian/r-bioc-limma/usr/share/lintian/overrides/r-bioc-limma; \
+ /build/buildd-r-bioc-limma_3.8.3-1-sparc-6z69eX/r-bioc-limma-3.8.3/debian/r-bioc-limma/usr/share/lintian/overrides/r-bioc-limma; \
fi
Adding cdbs dependencies to debian/r-bioc-limma.substvars
dh_installdirs -pr-bioc-limma
-echo "R:Depends=r-base-core (>= 2.13.0~)" >> debian/r-bioc-limma.substvars
+echo "R:Depends=r-base-core (>= 2.13.1~)" >> debian/r-bioc-limma.substvars
dh_installdocs -pr-bioc-limma
dh_installexamples -pr-bioc-limma
dh_installman -pr-bioc-limma
@@ -715,58 +693,58 @@ dh_shlibdeps -pr-bioc-limma
dh_gencontrol -pr-bioc-limma
dh_md5sums -pr-bioc-limma
dh_builddeb -pr-bioc-limma
-dpkg-deb: building package `r-bioc-limma' in `../r-bioc-limma_3.8.2-1_sparc.deb'.
- dpkg-genchanges -B -msparc Build Daemon (lebrun) <buildd_sparc-lebrun at buildd.debian.org> >../r-bioc-limma_3.8.2-1_sparc.changes
+dpkg-deb: building package `r-bioc-limma' in `../r-bioc-limma_3.8.3-1_sparc.deb'.
+ dpkg-genchanges -B -msparc Build Daemon (lebrun) <buildd_sparc-lebrun at buildd.debian.org> >../r-bioc-limma_3.8.3-1_sparc.changes
dpkg-genchanges: arch-specific upload - not including arch-independent packages
dpkg-genchanges: binary-only upload - not including any source code
- dpkg-source --after-build r-bioc-limma-3.8.2
+ dpkg-source --after-build r-bioc-limma-3.8.3
dpkg-buildpackage: binary only upload (no source included)
────────────────────────────────────────────────────────────────────────────────
-Build finished at 20110602-1531
+Build finished at 20110816-1252
-r-bioc-limma_3.8.2-1_sparc.changes:
+r-bioc-limma_3.8.3-1_sparc.changes:
Format: 1.8
-Date: Thu, 02 Jun 2011 13:07:58 +0900
+Date: Sun, 14 Aug 2011 20:30:21 +0900
Source: r-bioc-limma
Binary: r-bioc-limma
Architecture: sparc
-Version: 3.8.2-1
+Version: 3.8.3-1
Distribution: sid
Urgency: low
Maintainer: sparc Build Daemon (lebrun) <buildd_sparc-lebrun at buildd.debian.org>
Changed-By: Charles Plessy <plessy at debian.org>
Description:
r-bioc-limma - linear models for microarray data
-Closes: 628548
Changes:
- r-bioc-limma (3.8.2-1) unstable; urgency=low
+ r-bioc-limma (3.8.3-1) unstable; urgency=low
.
- * Initial release (closes: #628548).
+ * New upstream release.
+ * [e891bb6b] Corrected VCS-Git url.
Checksums-Sha1:
- 593e7f312a2d3714d3384d602729db4fe6ff2017 1400872 r-bioc-limma_3.8.2-1_sparc.deb
+ 55b6c2303b4ae1ce4c2a521686e744ead5a8e393 1401750 r-bioc-limma_3.8.3-1_sparc.deb
Checksums-Sha256:
- d83025c0a51e19e530b743a4b1c813c0ef3f275fb4fb8114b477103fff9cf668 1400872 r-bioc-limma_3.8.2-1_sparc.deb
+ 6619ced029153d5fa2241aa669fba96cfb6c20edcf705bc963503227ef764ba9 1401750 r-bioc-limma_3.8.3-1_sparc.deb
Files:
- b809e9956ec2c250940d2727d3feda41 1400872 gnu-r optional r-bioc-limma_3.8.2-1_sparc.deb
+ 89a8cc53e17942d8b0862106d9d3a30e 1401750 gnu-r optional r-bioc-limma_3.8.3-1_sparc.deb
┌──────────────────────────────────────────────────────────────────────────────┐
│ Package contents │
└──────────────────────────────────────────────────────────────────────────────┘
-r-bioc-limma_3.8.2-1_sparc.deb
+r-bioc-limma_3.8.3-1_sparc.deb
──────────────────────────────
new debian package, version 2.0.
- size 1400872 bytes: control archive= 1505 bytes.
+ size 1401750 bytes: control archive= 1505 bytes.
767 bytes, 16 lines control
2226 bytes, 29 lines md5sums
Package: r-bioc-limma
- Version: 3.8.2-1
+ Version: 3.8.3-1
Architecture: sparc
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
- Installed-Size: 1676
- Depends: libc6 (>= 2.6), r-base-core (>= 2.13.0~)
+ Installed-Size: 1672
+ Depends: libc6 (>= 2.6), r-base-core (>= 2.13.1~)
Section: gnu-r
Priority: optional
Homepage: http://bioinf.wehi.edu.au/limma/
@@ -778,50 +756,50 @@ r-bioc-limma_3.8.2-1_sparc.deb
apply to all array platforms and treat Affymetrix, single channel and two
channel experiments in a unified way.
-drwxr-xr-x root/root 0 2011-06-02 15:31 ./
-drwxr-xr-x root/root 0 2011-06-02 15:31 ./usr/
-drwxr-xr-x root/root 0 2011-06-02 15:31 ./usr/share/
-drwxr-xr-x root/root 0 2011-06-02 15:31 ./usr/share/doc/
-drwxr-xr-x root/root 0 2011-06-02 15:31 ./usr/share/doc/r-bioc-limma/
--rw-r--r-- root/root 2116 2011-06-02 15:30 ./usr/share/doc/r-bioc-limma/copyright
--rw-r--r-- root/root 25983 2011-05-20 04:14 ./usr/share/doc/r-bioc-limma/changelog.gz
--rw-r--r-- root/root 161 2011-06-02 15:30 ./usr/share/doc/r-bioc-limma/changelog.Debian.gz
-drwxr-xr-x root/root 0 2011-06-02 15:31 ./usr/lib/
-drwxr-xr-x root/root 0 2011-06-02 15:31 ./usr/lib/R/
-drwxr-xr-x root/root 0 2011-06-02 15:31 ./usr/lib/R/site-library/
-drwxr-xr-x root/root 0 2011-06-02 15:31 ./usr/lib/R/site-library/limma/
--rw-r--r-- root/root 1872 2011-06-02 15:31 ./usr/lib/R/site-library/limma/NAMESPACE
--rw-r--r-- root/root 9360 2011-06-02 15:31 ./usr/lib/R/site-library/limma/INDEX
--rw-r--r-- root/root 1009 2011-06-02 15:31 ./usr/lib/R/site-library/limma/DESCRIPTION
-drwxr-xr-x root/root 0 2011-06-02 15:31 ./usr/lib/R/site-library/limma/help/
--rw-r--r-- root/root 1342 2011-06-02 15:31 ./usr/lib/R/site-library/limma/help/paths.rds
--rw-r--r-- root/root 2361 2011-06-02 15:31 ./usr/lib/R/site-library/limma/help/aliases.rds
--rw-r--r-- root/root 3248 2011-06-02 15:31 ./usr/lib/R/site-library/limma/help/limma.rdx
--rw-r--r-- root/root 449924 2011-06-02 15:31 ./usr/lib/R/site-library/limma/help/limma.rdb
--rw-r--r-- root/root 6150 2011-06-02 15:31 ./usr/lib/R/site-library/limma/help/AnIndex
-drwxr-xr-x root/root 0 2011-06-02 15:31 ./usr/lib/R/site-library/limma/R/
--rw-r--r-- root/root 384 2011-06-02 15:31 ./usr/lib/R/site-library/limma/R/limma
--rw-r--r-- root/root 3735 2011-06-02 15:31 ./usr/lib/R/site-library/limma/R/limma.rdx
--rw-r--r-- root/root 172730 2011-06-02 15:31 ./usr/lib/R/site-library/limma/R/limma.rdb
--rwxr-xr-x root/root 1230 2011-06-02 15:31 ./usr/lib/R/site-library/limma/CITATION
-drwxr-xr-x root/root 0 2011-06-02 15:31 ./usr/lib/R/site-library/limma/doc/
--rw-r--r-- root/root 45616 2011-06-02 15:31 ./usr/lib/R/site-library/limma/doc/limma.pdf
--rwxr-xr-x root/root 84633 2011-06-02 15:31 ./usr/lib/R/site-library/limma/doc/changelog.txt
--rwxr-xr-x root/root 673 2011-06-02 15:31 ./usr/lib/R/site-library/limma/doc/index.html
--rwxr-xr-x root/root 1711 2011-06-02 15:31 ./usr/lib/R/site-library/limma/doc/limma.Rnw
--rw-r--r-- root/root 687780 2011-06-02 15:31 ./usr/lib/R/site-library/limma/doc/usersguide.pdf
-drwxr-xr-x root/root 0 2011-06-02 15:31 ./usr/lib/R/site-library/limma/Meta/
--rw-r--r-- root/root 217 2011-06-02 15:31 ./usr/lib/R/site-library/limma/Meta/vignette.rds
--rw-r--r-- root/root 5522 2011-06-02 15:31 ./usr/lib/R/site-library/limma/Meta/hsearch.rds
--rw-r--r-- root/root 503 2011-06-02 15:31 ./usr/lib/R/site-library/limma/Meta/nsInfo.rds
--rw-r--r-- root/root 2853 2011-06-02 15:31 ./usr/lib/R/site-library/limma/Meta/links.rds
--rw-r--r-- root/root 5946 2011-06-02 15:31 ./usr/lib/R/site-library/limma/Meta/Rd.rds
--rw-r--r-- root/root 1049 2011-06-02 15:31 ./usr/lib/R/site-library/limma/Meta/package.rds
-drwxr-xr-x root/root 0 2011-06-02 15:31 ./usr/lib/R/site-library/limma/libs/
--rw-r--r-- root/root 9212 2011-06-02 15:31 ./usr/lib/R/site-library/limma/libs/limma.so
-drwxr-xr-x root/root 0 2011-06-02 15:31 ./usr/lib/R/site-library/limma/html/
--rw-r--r-- root/root 1179 2011-06-02 15:31 ./usr/lib/R/site-library/limma/html/R.css
--rw-r--r-- root/root 34039 2011-06-02 15:31 ./usr/lib/R/site-library/limma/html/00Index.html
+drwxr-xr-x root/root 0 2011-08-16 12:52 ./
+drwxr-xr-x root/root 0 2011-08-16 12:52 ./usr/
+drwxr-xr-x root/root 0 2011-08-16 12:52 ./usr/share/
+drwxr-xr-x root/root 0 2011-08-16 12:52 ./usr/share/doc/
+drwxr-xr-x root/root 0 2011-08-16 12:52 ./usr/share/doc/r-bioc-limma/
+-rw-r--r-- root/root 2117 2011-08-16 12:52 ./usr/share/doc/r-bioc-limma/copyright
+-rw-r--r-- root/root 26050 2011-08-08 16:14 ./usr/share/doc/r-bioc-limma/changelog.gz
+-rw-r--r-- root/root 234 2011-08-16 12:52 ./usr/share/doc/r-bioc-limma/changelog.Debian.gz
+drwxr-xr-x root/root 0 2011-08-16 12:52 ./usr/lib/
+drwxr-xr-x root/root 0 2011-08-16 12:52 ./usr/lib/R/
+drwxr-xr-x root/root 0 2011-08-16 12:52 ./usr/lib/R/site-library/
+drwxr-xr-x root/root 0 2011-08-16 12:52 ./usr/lib/R/site-library/limma/
+-rw-r--r-- root/root 1872 2011-08-16 12:52 ./usr/lib/R/site-library/limma/NAMESPACE
+-rw-r--r-- root/root 9360 2011-08-16 12:52 ./usr/lib/R/site-library/limma/INDEX
+-rw-r--r-- root/root 1009 2011-08-16 12:52 ./usr/lib/R/site-library/limma/DESCRIPTION
+drwxr-xr-x root/root 0 2011-08-16 12:52 ./usr/lib/R/site-library/limma/help/
+-rw-r--r-- root/root 1344 2011-08-16 12:52 ./usr/lib/R/site-library/limma/help/paths.rds
+-rw-r--r-- root/root 2363 2011-08-16 12:52 ./usr/lib/R/site-library/limma/help/aliases.rds
+-rw-r--r-- root/root 3254 2011-08-16 12:52 ./usr/lib/R/site-library/limma/help/limma.rdx
+-rw-r--r-- root/root 450261 2011-08-16 12:52 ./usr/lib/R/site-library/limma/help/limma.rdb
+-rw-r--r-- root/root 6150 2011-08-16 12:52 ./usr/lib/R/site-library/limma/help/AnIndex
+drwxr-xr-x root/root 0 2011-08-16 12:52 ./usr/lib/R/site-library/limma/R/
+-rw-r--r-- root/root 384 2011-08-16 12:52 ./usr/lib/R/site-library/limma/R/limma
+-rw-r--r-- root/root 3741 2011-08-16 12:52 ./usr/lib/R/site-library/limma/R/limma.rdx
+-rw-r--r-- root/root 173271 2011-08-16 12:52 ./usr/lib/R/site-library/limma/R/limma.rdb
+-rwxr-xr-x root/root 1230 2011-08-16 12:52 ./usr/lib/R/site-library/limma/CITATION
+drwxr-xr-x root/root 0 2011-08-16 12:52 ./usr/lib/R/site-library/limma/doc/
+-rw-r--r-- root/root 45616 2011-08-16 12:52 ./usr/lib/R/site-library/limma/doc/limma.pdf
+-rwxr-xr-x root/root 84899 2011-08-16 12:52 ./usr/lib/R/site-library/limma/doc/changelog.txt
+-rwxr-xr-x root/root 673 2011-08-16 12:52 ./usr/lib/R/site-library/limma/doc/index.html
+-rwxr-xr-x root/root 1711 2011-08-16 12:52 ./usr/lib/R/site-library/limma/doc/limma.Rnw
+-rw-r--r-- root/root 687780 2011-08-16 12:52 ./usr/lib/R/site-library/limma/doc/usersguide.pdf
+drwxr-xr-x root/root 0 2011-08-16 12:52 ./usr/lib/R/site-library/limma/Meta/
+-rw-r--r-- root/root 217 2011-08-16 12:52 ./usr/lib/R/site-library/limma/Meta/vignette.rds
+-rw-r--r-- root/root 5524 2011-08-16 12:52 ./usr/lib/R/site-library/limma/Meta/hsearch.rds
+-rw-r--r-- root/root 505 2011-08-16 12:52 ./usr/lib/R/site-library/limma/Meta/nsInfo.rds
+-rw-r--r-- root/root 2854 2011-08-16 12:52 ./usr/lib/R/site-library/limma/Meta/links.rds
+-rw-r--r-- root/root 5947 2011-08-16 12:52 ./usr/lib/R/site-library/limma/Meta/Rd.rds
+-rw-r--r-- root/root 1051 2011-08-16 12:52 ./usr/lib/R/site-library/limma/Meta/package.rds
+drwxr-xr-x root/root 0 2011-08-16 12:52 ./usr/lib/R/site-library/limma/libs/
+-rw-r--r-- root/root 8168 2011-08-16 12:52 ./usr/lib/R/site-library/limma/libs/limma.so
+drwxr-xr-x root/root 0 2011-08-16 12:52 ./usr/lib/R/site-library/limma/html/
+-rw-r--r-- root/root 1179 2011-08-16 12:52 ./usr/lib/R/site-library/limma/html/R.css
+-rw-r--r-- root/root 34039 2011-08-16 12:52 ./usr/lib/R/site-library/limma/html/00Index.html
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -835,7 +813,7 @@ Built successfully
│ Post Build │
└──────────────────────────────────────────────────────────────────────────────┘
-Purging /var/lib/schroot/mount/sid-sparc-sbuild-5643b3e4-4c7d-4353-b689-33f1984b9a4b/build/buildd-r-bioc-limma_3.8.2-1-sparc-7raOL5
+Purging /var/lib/schroot/mount/sid-sparc-sbuild-67c6fa7d-53a0-4513-b05d-8c181080d2c2/build/buildd-r-bioc-limma_3.8.3-1-sparc-6z69eX
Not cleaning session: cloned chroot in use
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -843,18 +821,18 @@ Not cleaning session: cloned chroot in use
└──────────────────────────────────────────────────────────────────────────────┘
Architecture: sparc
-Build-Space: 5084
-Build-Time: 59
+Build-Space: 5080
+Build-Time: 57
Distribution: sid
-Install-Time: 202
-Job: r-bioc-limma_3.8.2-1
+Install-Time: 203
+Job: r-bioc-limma_3.8.3-1
Package: r-bioc-limma
-Package-Time: 315
-Source-Version: 3.8.2-1
-Space: 5084
+Package-Time: 310
+Source-Version: 3.8.3-1
+Space: 5080
Status: successful
-Version: 3.8.2-1
+Version: 3.8.3-1
────────────────────────────────────────────────────────────────────────────────
-Finished at 20110602-1531
-Build needed 00:05:15, 5084k disc space
-Signature with key '81587D01' requested:
+Finished at 20110816-1252
+Build needed 00:05:10, 5080k disc space
+Signature with key '632E3DB6' requested:
--
linear models for microarray data
More information about the debian-med-commit
mailing list