[med-svn] r8508 - in trunk/packages/plastimatch/tags: . 1.5.5+dfsg0 1.5.5+dfsg0/debian 1.5.5+dfsg0/debian/source
Dominique Belhachemi
domibel at alioth.debian.org
Thu Nov 10 03:58:25 UTC 2011
Author: domibel
Date: 2011-11-10 03:58:24 +0000 (Thu, 10 Nov 2011)
New Revision: 8508
Added:
trunk/packages/plastimatch/tags/1.5.5+dfsg0/
trunk/packages/plastimatch/tags/1.5.5+dfsg0/debian/
trunk/packages/plastimatch/tags/1.5.5+dfsg0/debian/changelog
trunk/packages/plastimatch/tags/1.5.5+dfsg0/debian/compat
trunk/packages/plastimatch/tags/1.5.5+dfsg0/debian/control
trunk/packages/plastimatch/tags/1.5.5+dfsg0/debian/copyright
trunk/packages/plastimatch/tags/1.5.5+dfsg0/debian/get-orig-source
trunk/packages/plastimatch/tags/1.5.5+dfsg0/debian/manpages
trunk/packages/plastimatch/tags/1.5.5+dfsg0/debian/rules
trunk/packages/plastimatch/tags/1.5.5+dfsg0/debian/source/
trunk/packages/plastimatch/tags/1.5.5+dfsg0/debian/source/format
trunk/packages/plastimatch/tags/1.5.5+dfsg0/debian/watch
Log:
tagging plastimatch 1.5.5+dfsg0
Added: trunk/packages/plastimatch/tags/1.5.5+dfsg0/debian/changelog
===================================================================
--- trunk/packages/plastimatch/tags/1.5.5+dfsg0/debian/changelog (rev 0)
+++ trunk/packages/plastimatch/tags/1.5.5+dfsg0/debian/changelog 2011-11-10 03:58:24 UTC (rev 8508)
@@ -0,0 +1,35 @@
+plastimatch (1.5.5+dfsg0-1) unstable; urgency=low
+
+ * new upstream release
+
+ -- Gregory C. Sharp <gregsharp.geo at yahoo.com> Mon, 31 Oct 2011 22:54:37 -0400
+
+plastimatch (1.5.4+dfsg0-1) unstable; urgency=low
+
+ * upload to unstable (Closes: #629344)
+
+ [Gregory C. Sharp]
+ * new upstream release
+
+ [Andreas Tille]
+ * fixed Vcs fields
+
+ [Dominique Belhachemi]
+ * build depend on libinsighttoolkit3-dev (>= 3.20.0-15)
+ due to the containing multi-arch fix
+
+ -- Gregory C. Sharp <gregsharp.geo at yahoo.com> Sun, 09 Oct 2011 20:41:35 -0400
+
+plastimatch (1.5.3.dfsg0-1) experimental; urgency=low
+
+ [Dominique Belhachemi]
+ * removed src/plastimatch/opencl* files due to copyright issues
+ * added dfsg0 to package version string
+
+ -- Gregory C. Sharp <gregsharp.geo at yahoo.com> Sun, 11 Sep 2011 16:58:58 -0400
+
+plastimatch (1.5.3-1) experimental; urgency=low
+
+ * Initial release (Closes: #629344)
+
+ -- Gregory C. Sharp <gregsharp.geo at yahoo.com> Sun, 24 Jul 2011 22:30:24 -0400
Added: trunk/packages/plastimatch/tags/1.5.5+dfsg0/debian/compat
===================================================================
--- trunk/packages/plastimatch/tags/1.5.5+dfsg0/debian/compat (rev 0)
+++ trunk/packages/plastimatch/tags/1.5.5+dfsg0/debian/compat 2011-11-10 03:58:24 UTC (rev 8508)
@@ -0,0 +1 @@
+8
Added: trunk/packages/plastimatch/tags/1.5.5+dfsg0/debian/control
===================================================================
--- trunk/packages/plastimatch/tags/1.5.5+dfsg0/debian/control (rev 0)
+++ trunk/packages/plastimatch/tags/1.5.5+dfsg0/debian/control 2011-11-10 03:58:24 UTC (rev 8508)
@@ -0,0 +1,55 @@
+Source: plastimatch
+Section: science
+Priority: optional
+Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+DM-Upload-Allowed: yes
+Uploaders: Gregory C. Sharp <gregsharp.geo at yahoo.com>, Dominique Belhachemi <domibel at debian.org>
+Build-Depends: debhelper (>= 8), cmake,
+ gfortran,
+ libfftw3-dev,
+ libgdcm2-dev,
+ libinsighttoolkit3-dev (>= 3.20.0-15),
+ libpng12-dev,
+ libtiff4-dev,
+ uuid-dev,
+ zlib1g-dev
+Standards-Version: 3.9.2
+Homepage: http://plastimatch.org
+Vcs-Svn: svn://svn.debian.org/debian-med/trunk/packages/plastimatch/trunk/
+Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/plastimatch/trunk
+
+Package: plastimatch
+Section: science
+Architecture: any
+Depends: ${shlibs:Depends}, ${misc:Depends}
+Description: medical image reconstruction and registration
+ Plastimatch is an open source software for deformable
+ image registration. It is designed for high-performance
+ volumetric registration of medical images, such as X-ray
+ computed tomography (CT), magnetic resonance imaging
+ (MRI), and positron emission tomography (PET). Software
+ features include:
+ * B-spline method for deformable image registration
+ (GPU and multicore accelerated)
+ * Demons method for deformable image registration
+ (GPU accelerated)
+ * ITK-based algorithms for translation, rigid, affine,
+ demons, and B-spline registration
+ * Pipelined, multi-stage registration framework with
+ seamless conversion between most algorithms and
+ transform types
+ * Landmark-based deformable registration using thin-
+ plate splines for global registration
+ * Landmark-based deformable registration using radial
+ basis functions for local corrections
+ * Broad support for 3D image file formats (using ITK),
+ including DICOM, Nifti, NRRD, MetaImage, and Analyze
+ * DICOM and DICOM-RT import and export
+ * XiO import and export
+ * Plugin to 3D Slicer
+ Plastimatch also features two handy utilities which are
+ not directly related to image registration:
+ * FDK cone-beam CT reconstruction (GPU and multicore
+ accelerated)
+ * Digitally reconstructed radiograph (DRR) generation
+ (GPU and multicore accelerated)
Added: trunk/packages/plastimatch/tags/1.5.5+dfsg0/debian/copyright
===================================================================
--- trunk/packages/plastimatch/tags/1.5.5+dfsg0/debian/copyright (rev 0)
+++ trunk/packages/plastimatch/tags/1.5.5+dfsg0/debian/copyright 2011-11-10 03:58:24 UTC (rev 8508)
@@ -0,0 +1,177 @@
+Format: http://dep.debian.net/deps/dep5
+Upstream-Name: plastimatch
+Upstream-Contact: Gregory C. Sharp <gregsharp.geo at yahoo.com>
+Source: http://plastimatch.org
+
+Files: *
+Copyright: (c) 2004-2011 Massachusetts General Hospital
+License: Plastimatch license
+ Plastimatch Software License ("Software License") Version 1.0
+ .
+ This Software License covers downloads from the Plastimatch project
+ ("Plastimatch") maintained by The General Hospital Corporation
+ Inc. ("MGH").
+ .
+ Your downloading, copying, modifying, displaying, distributing or use
+ of any software and/or data from Plastimatch (collectively, the
+ "Software") constitutes acceptance of all of the terms and conditions
+ of this Software License. If you do not agree to such terms and
+ conditions, you have no right to download, copy, modify, display,
+ distribute or use the Software.
+ .
+ 1. As used in this Software License, "you" means the individual
+ downloading and/or using, reproducing, modifying, displaying and/or
+ distributing the Software and the institution or entity which
+ employs or is otherwise affiliated with such individual in
+ connection therewith. The MGH hereby grants you, with right to
+ sublicense, with respect to MGH's rights in the software, and data,
+ if any, which is the subject of this Software License
+ (collectively, the "Software"), a royalty-free, non-exclusive
+ license to use, reproduce, make derivative works of, display and
+ distribute the Software, provided that:
+ .
+ (a) you accept and adhere to all of the terms and conditions of
+ this Software License;
+ .
+ (b) in connection with any copy of or sublicense of all or any
+ portion of the Software, all of the terms and conditions in this
+ Software License shall appear in and shall apply to such copy and
+ such sublicense, including without limitation all source and
+ executable forms and on any user documentation, prefaced with the
+ following words: "All or portions of this licensed product (such
+ portions are the "Software") have been obtained under license from
+ MGH and are subject to the following terms and conditions:"
+ .
+ (c) you preserve and maintain all applicable attributions,
+ copyright notices and licenses included in or applicable to the
+ Software;
+ .
+ (d) modified versions of the Software must be clearly identified
+ and marked as such, and must not be misrepresented as being the
+ original Software; and
+ .
+ (e) you consider making, but are under no obligation to make, the
+ source code of any of your modifications to the Software freely
+ available to others on an open source basis.
+ .
+ 2. The license granted under this Software License includes without
+ limitation the right to (i) incorporate the Software into
+ proprietary programs (subject to any restrictions applicable to
+ such programs), (ii) add your own copyright statement to your
+ modifications of the Software, and (iii) provide additional or
+ different license terms and conditions in your sublicenses of
+ modifications of the Software; provided that in each case your use,
+ reproduction or distribution of such modifications otherwise
+ complies with the conditions stated in this Software License.
+ .
+ 3. This Software License does not grant any rights with respect to
+ third party software, except those rights that MGH has been
+ authorized by a third party to grant to you, and accordingly you
+ are solely responsible for (i) obtaining any permissions from third
+ parties that you need to use, reproduce, make derivative works of,
+ display and distribute the Software, and (ii) informing your
+ sublicensees, including without limitation your end-users, of their
+ obligations to secure any such required permissions.
+ .
+ 4. The Software has been designed for research purposes only and has
+ not been reviewed or approved by the Food and Drug Administration
+ or by any other agency. YOU ACKNOWLEDGE AND AGREE THAT CLINICAL
+ APPLICATIONS ARE NEITHER RECOMMENDED NOR ADVISED. Any
+ commercialization of the Software is at the sole risk of the party
+ or parties engaged in such commercialization. You further agree to
+ use, reproduce, make derivative works of, display and distribute
+ the Software in compliance with all applicable governmental laws,
+ regulations and orders, including without limitation those relating
+ to export and import control.
+ .
+ 5. The Software is provided "AS IS" and neither MGH nor any
+ contributor to the software (each a "Contributor") shall have any
+ obligation to provide maintenance, support, updates, enhancements
+ or modifications thereto. MGH AND ALL CONTRIBUTORS SPECIFICALLY
+ DISCLAIM ALL EXPRESS AND IMPLIED WARRANTIES OF ANY KIND INCLUDING,
+ BUT NOT LIMITED TO, ANY WARRANTIES OF MERCHANTABILITY, FITNESS FOR
+ A PARTICULAR PURPOSE AND NON-INFRINGEMENT. IN NO EVENT SHALL MGH
+ OR ANY CONTRIBUTOR BE LIABLE TO ANY PARTY FOR DIRECT, INDIRECT,
+ SPECIAL, INCIDENTAL, EXEMPLARY OR CONSEQUENTIAL DAMAGES HOWEVER
+ CAUSED AND ON ANY THEORY OF LIABILITY ARISING IN ANY WAY RELATED TO
+ THE SOFTWARE, EVEN IF MGH OR ANY CONTRIBUTOR HAS BEEN ADVISED OF
+ THE POSSIBILITY OF SUCH DAMAGES. TO THE MAXIMUM EXTENT NOT
+ PROHIBITED BY LAW OR REGULATION, YOU FURTHER ASSUME ALL LIABILITY
+ FOR YOUR USE, REPRODUCTION, MAKING OF DERIVATIVE WORKS, DISPLAY,
+ LICENSE OR DISTRIBUTION OF THE SOFTWARE AND AGREE TO INDEMNIFY AND
+ HOLD HARMLESS MGH AND ALL CONTRIBUTORS FROM AND AGAINST ANY AND ALL
+ CLAIMS, SUITS, ACTIONS, DEMANDS AND JUDGMENTS ARISING THEREFROM.
+ .
+ 6. None of the names, logos or trademarks of MGH or any of MGH's
+ affiliates or any of the Contributors, or any funding agency, may
+ be used to endorse or promote products produced in whole or in part
+ by operation of the Software or derived from or based on the
+ Software without specific prior written permission from the
+ applicable party.
+ .
+ 7. Any use, reproduction or distribution of the Software which is not
+ in accordance with this Software License shall automatically revoke
+ all rights granted to you under this Software License and render
+ Paragraphs 1 and 2 of this Software License null and void.
+ .
+ 8. This Software License does not grant any rights in or to any
+ intellectual property owned by MGH or any Contributor except those
+ rights expressly granted hereunder.
+
+Files: debian/*
+Copyright: 2011 Gregory C. Sharp <gregsharp.geo at yahoo.com>
+License: BSD-3-Clause
+
+Files: libs/bstrlib-05122010/*
+Copyright: 2002-2008 Paul Hsieh
+License: BSD-3-Clause
+
+Files: libs/devillard/*
+Copyright: 1998 Nicholas Devillard
+License: public-domain
+
+Files: libs/dlib-17.34/*
+Copyright: 2003-2011 Davis E. King
+License: BSL-1.0
+
+Files: libs/itk-3.20.0/*
+Copyright: 1999-2003 Insight Software Consortium
+License: BSD-3-Clause
+
+Files: libs/liblbfgs-1.9/*
+Copyright: 1990 Jorge Nocedal, 2007-2010 Naoaki Okazaki
+License: MIT
+
+Files: libs/nocedal/*
+Copyright: 1990 Jorge Nocedal
+License: BSD-3-Clause
+
+Files: libs/nSIFT/*
+Copyright: 2005-2007 Warren Cheung
+License: nSIFT license
+ Redistribution and use in source and binary forms, with or without
+ modification, are permitted provided that the following conditions are met:
+ * Redistributions of source code must retain the above copyright notice,
+ this list of conditions and the following disclaimer.
+ * Redistributions in binary form must reproduce the above copyright notice,
+ this list of conditions and the following disclaimer in the documentation
+ and/or other materials provided with the distribution.
+ * The name of the Insight Consortium, nor the names of any consortium members,
+ nor of any contributors, may be used to endorse or promote products derived
+ from this software without specific prior written permission.
+ * Modified source versions must be plainly marked as such, and must not be
+ misrepresented as being the original software.
+ THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDER AND CONTRIBUTORS "AS IS"
+ AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
+ IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
+ ARE DISCLAIMED. IN NO EVENT SHALL THE AUTHORS OR CONTRIBUTORS BE LIABLE FOR
+ ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL
+ DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
+ SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
+ CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY,
+ OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE
+ OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
+
+Files: libs/ransac/*
+Copyright: 2010 Ziv Yaniv
+License: BSD-3-Clause
Added: trunk/packages/plastimatch/tags/1.5.5+dfsg0/debian/get-orig-source
===================================================================
--- trunk/packages/plastimatch/tags/1.5.5+dfsg0/debian/get-orig-source (rev 0)
+++ trunk/packages/plastimatch/tags/1.5.5+dfsg0/debian/get-orig-source 2011-11-10 03:58:24 UTC (rev 8508)
@@ -0,0 +1,52 @@
+#!/bin/sh
+
+# This lets us use a different (local) tarball during debugging.
+# Just put file name on the command line.
+if test -z "$1"; then
+ download_name=`uscan --verbose --force-download | grep Source | head -n 2 | tail -n 1 | sed -e 's/.*\///'`;
+ echo Downloaded $download_name
+else
+ download_name=$1
+ echo Using local file $download_name
+fi
+
+PKG=`dpkg-parsechangelog | awk '/^Source/ { print $2 }'`
+VERSION=`dpkg-parsechangelog | awk '/^Version:/ { print $2 }' | sed 's/\([0-9\.]\+\)-[0-9]\+$/\1/'`
+
+cd ..
+mkdir -p tarballs
+rm -rf tarballs/*
+cd tarballs
+tar xf ../$download_name
+base=`ls`
+echo "Repackaging $base into ${PKG}-${VERSION}"
+cp -a $base ${PKG}-${VERSION}
+cd ${PKG}-${VERSION}
+rm -rf doc/*.odt
+rm -rf doc/*.pdf
+rm -rf doc/*.ppt
+rm -rf doc/*.TXT
+rm -rf doc/figures
+rm -rf doc/sphinx
+rm -rf extra
+rm -rf FindCUDA
+rm -rf src/fatm
+rm -rf src/fourdct
+rm -rf src/ise
+rm -rf src/oraifutils
+rm -rf src/slicer
+rm -rf src/reg-2-3
+rm -rf src/plastimatch/opencl_test.*
+rm -rf libs/getopt
+rm -rf libs/libf2c
+rm -rf libs/msinttypes
+rm -rf libs/specfun
+rm -rf libs/sqlite-3.6.21
+rm -rf libs/win32
+
+cd ..
+GZIP="--best --no-name" tar -czf "$PKG"_"$VERSION".orig.tar.gz "$PKG"-"$VERSION"
+rm -rf $base
+rm -rf "$PKG"-"$VERSION"
+rm ../"$PKG"_"$VERSION".orig.tar.bz2 2> /dev/null
+mv "$PKG"_"$VERSION".orig.tar.gz ..
Property changes on: trunk/packages/plastimatch/tags/1.5.5+dfsg0/debian/get-orig-source
___________________________________________________________________
Added: svn:executable
+ *
Added: trunk/packages/plastimatch/tags/1.5.5+dfsg0/debian/manpages
===================================================================
--- trunk/packages/plastimatch/tags/1.5.5+dfsg0/debian/manpages (rev 0)
+++ trunk/packages/plastimatch/tags/1.5.5+dfsg0/debian/manpages 2011-11-10 03:58:24 UTC (rev 8508)
@@ -0,0 +1,4 @@
+doc/man/drr.1
+doc/man/fdk.1
+doc/man/landmark_warp.1
+doc/man/plastimatch.1
Added: trunk/packages/plastimatch/tags/1.5.5+dfsg0/debian/rules
===================================================================
--- trunk/packages/plastimatch/tags/1.5.5+dfsg0/debian/rules (rev 0)
+++ trunk/packages/plastimatch/tags/1.5.5+dfsg0/debian/rules 2011-11-10 03:58:24 UTC (rev 8508)
@@ -0,0 +1,19 @@
+#!/usr/bin/make -f
+
+# Uncomment this to turn on verbose mode.
+#export DH_VERBOSE=1
+
+%:
+ dh $@ --parallel
+
+DEB_CMAKE_EXTRA_FLAGS += \
+ -DCMAKE_BUILD_TYPE:STRING=RELEASE \
+ -DCMAKE_SKIP_RPATH:BOOL=ON \
+ -DBUILD_DEBIAN:BOOL=ON \
+ -DBUILD_TESTING:BOOL=ON
+
+override_dh_auto_configure:
+ dh_auto_configure -- $(DEB_CMAKE_EXTRA_FLAGS)
+
+get-orig-source:
+ . debian/get-orig-source
Property changes on: trunk/packages/plastimatch/tags/1.5.5+dfsg0/debian/rules
___________________________________________________________________
Added: svn:executable
+ *
Added: trunk/packages/plastimatch/tags/1.5.5+dfsg0/debian/source/format
===================================================================
--- trunk/packages/plastimatch/tags/1.5.5+dfsg0/debian/source/format (rev 0)
+++ trunk/packages/plastimatch/tags/1.5.5+dfsg0/debian/source/format 2011-11-10 03:58:24 UTC (rev 8508)
@@ -0,0 +1 @@
+3.0 (quilt)
Added: trunk/packages/plastimatch/tags/1.5.5+dfsg0/debian/watch
===================================================================
--- trunk/packages/plastimatch/tags/1.5.5+dfsg0/debian/watch (rev 0)
+++ trunk/packages/plastimatch/tags/1.5.5+dfsg0/debian/watch 2011-11-10 03:58:24 UTC (rev 8508)
@@ -0,0 +1,4 @@
+version=3
+opts=dversionmangle=s/\+dfsg[0-9]// \
+http://forge.abcd.harvard.edu/gf/project/plastimatch/frs/ \
+ .*/plastimatch-(.+)-Source.tar.bz2
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