[med-svn] [SCM] bwa branch, meta, updated. 1d4815cde904089c4f8e680eb3aa98d1240f088d
Charles Plessy
plessy at debian.org
Sun Nov 13 10:29:52 UTC 2011
The following commit has been merged in the meta branch:
commit 1d4815cde904089c4f8e680eb3aa98d1240f088d
Author: Charles Plessy <plessy at debian.org>
Date: Sun Nov 13 19:26:44 2011 +0900
Build logs for 0.5.9-2.
diff --git a/alpha.log b/alpha.log
index b38eb48..89ece1e 100644
--- a/alpha.log
+++ b/alpha.log
@@ -1,61 +1,67 @@
-From buildd at goedel.debian.org Tue Feb 08 11:19:41 2011
-Return-path: <buildd at goedel.debian.org>
-Received: from kokkonen.debian.org ([2001:41b8:202:deb:216:35ff:fec4:6340])
+From buildd at goetz.debian.org Sat Mar 12 07:59:08 2011
+Return-path: <buildd at goetz.debian.org>
+Received: from merikanto.debian.org ([2001:858:2:2:216:35ff:fec4:a49a])
from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
- CN=kokkonen.debian.org,
- EMAIL=hostmaster at kokkonen.debian.org (verified)
+ CN=merikanto.debian.org,
+ EMAIL=hostmaster at merikanto.debian.org (verified)
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+ by merikanto.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
+ (Exim 4.69) (envelope-from <buildd at goetz.debian.org>)
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+ id 1PyJj0-00061n-Jh; Sat, 12 Mar 2011 07:58:58 +0000
+From: buildd on goetz <buildd at goetz.debian.org>
To: kurt at roeckx.be,logs at buildd.debian.org
-Subject: Log for successful build of bwa_0.5.9-1 on alpha (dist=sid)
+Subject: Log for successful build of bwa_0.5.9-2 on alpha (dist=sid)
Content-Type: text/plain; charset=UTF-8
Content-Transfer-Encoding: 8bit
-Message-Id: <E1Pmlbd-0004cA-Dj at goedel.debian.org>
-Date: Tue, 08 Feb 2011 11:19:37 +0000
+Message-Id: <E1PyJj0-00061n-Jh at goetz.debian.org>
+Date: Sat, 12 Mar 2011 07:58:58 +0000
Delivered-To: logs at buildd.debian.org
-sbuild (Debian sbuild) 0.60.0 (23 Feb 2010) on goedel.debian.org
+sbuild (Debian sbuild) 0.60.5 (14 Nov 2010) on goetz.debian.org
╔══════════════════════════════════════════════════════════════════════════════╗
-║ bwa 0.5.9-1 (alpha) 08 Feb 2011 11:17 ║
+║ bwa 0.5.9-2 (alpha) 12 Mar 2011 07:56 ║
╚══════════════════════════════════════════════════════════════════════════════╝
Package: bwa
-Version: 0.5.9-1
+Version: 0.5.9-2
Architecture: alpha
-Chroot Build Dir: /var/lib/schroot/mount/sid-alpha-sbuild-33a5461a-cb7a-41b3-85a6-02c69a43ad38/build/buildd-bwa_0.5.9-1-alpha-RA1JNc
-Start Time: 20110208-1117
-Hit http://ftp.de.debian.org sid Release.gpg
-Ign http://ftp.de.debian.org/debian/ sid/contrib Translation-en
-Ign http://ftp.de.debian.org/debian/ sid/main Translation-en
-Hit http://ftp.de.debian.org sid Release
-Hit http://ftp.de.debian.org sid/main alpha Packages/DiffIndex
-Hit http://incoming.debian.org sid Release.gpg
-Ign http://incoming.debian.org/debian/ sid/contrib Translation-en
-Ign http://incoming.debian.org/debian/ sid/main Translation-en
-Hit http://incoming.debian.org Release.gpg
-Ign http://incoming.debian.org/buildd-unstable/ Translation-en
-Hit http://ftp.de.debian.org sid/contrib alpha Packages/DiffIndex
-Hit http://incoming.debian.org sid Release
-Hit http://incoming.debian.org Release
-Hit http://incoming.debian.org sid/main Sources/DiffIndex
-Hit http://incoming.debian.org sid/contrib Sources/DiffIndex
-Hit http://incoming.debian.org sid/main alpha Packages/DiffIndex
-Hit http://incoming.debian.org sid/contrib alpha Packages/DiffIndex
-Hit http://incoming.debian.org Sources
-Hit http://incoming.debian.org Packages
+Chroot Build Dir: /var/lib/schroot/mount/sid-alpha-sbuild-dbcd01c7-3fb3-4738-ac87-614bbfa2aa7f/build/buildd-bwa_0.5.9-2-alpha-DYaNZK
+Start Time: 20110312-0756
+Get:1 http://ftp.uk.debian.org unstable InRelease [147 kB]
+Get:2 http://incoming.debian.org unstable InRelease [147 kB]
+Get:3 http://ftp.uk.debian.org unstable/main Sources [4196 kB]
+Get:4 http://ftp.uk.debian.org unstable/contrib Sources [38.7 kB]
+Get:5 http://ftp.uk.debian.org unstable/non-free Sources [81.8 kB]
+Get:6 http://ftp.uk.debian.org unstable/main alpha Packages [6813 kB]
+Ign http://incoming.debian.org InRelease
+Get:7 http://incoming.debian.org Release.gpg [835 B]
+Get:8 http://incoming.debian.org unstable/main Sources [4193 kB]
+Get:9 http://ftp.uk.debian.org unstable/contrib alpha Packages [51.1 kB]
+Ign http://ftp.uk.debian.org unstable/contrib TranslationIndex
+Get:10 http://ftp.uk.debian.org unstable/main TranslationIndex [2232 B]
+Ign http://ftp.uk.debian.org unstable/contrib Translation-en
+Get:11 http://incoming.debian.org unstable/contrib Sources [38.7 kB]
+Get:12 http://incoming.debian.org unstable/non-free Sources [81.8 kB]
+Get:13 http://incoming.debian.org unstable/main alpha Packages [6813 kB]
+Get:14 http://incoming.debian.org unstable/contrib alpha Packages [51.1 kB]
+Ign http://incoming.debian.org unstable/contrib TranslationIndex
+Get:15 http://incoming.debian.org unstable/main TranslationIndex [2232 B]
+Get:16 http://incoming.debian.org Release [1604 B]
+Get:17 http://incoming.debian.org Sources [36.1 kB]
+Get:18 http://incoming.debian.org Packages [516 kB]
+Ign http://incoming.debian.org unstable/contrib Translation-en
+Ign http://incoming.debian.org Translation-en
+Fetched 23.2 MB in 29s (782 kB/s)
Reading package lists...
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -77,54 +83,132 @@ Reading state information...
NOTICE: 'bwa' packaging is maintained in the 'Git' version control system at:
git://git.debian.org/git/debian-med/bwa.git
Need to get 119 kB of source archives.
-Get:1 http://incoming.debian.org/buildd-unstable/ bwa 0.5.9-1 (dsc) [1894 B]
-Get:2 http://incoming.debian.org/buildd-unstable/ bwa 0.5.9-1 (tar) [114 kB]
-Get:3 http://incoming.debian.org/buildd-unstable/ bwa 0.5.9-1 (diff) [3651 B]
-Fetched 119 kB in 0s (171 kB/s)
+Get:1 http://incoming.debian.org/buildd-unstable/ bwa 0.5.9-2 (dsc) [1245 B]
+Get:2 http://incoming.debian.org/buildd-unstable/ bwa 0.5.9-2 (tar) [114 kB]
+Get:3 http://incoming.debian.org/buildd-unstable/ bwa 0.5.9-2 (diff) [3828 B]
+Fetched 119 kB in 0s (161 kB/s)
Download complete and in download only mode
Check arch
──────────
** Using build dependencies supplied by package:
-Build-Depends: cdbs, debhelper (>= 8), zlib1g-dev
+Build-Depends: debhelper (>= 8), zlib1g-dev
┌──────────────────────────────────────────────────────────────────────────────┐
│ Install build dependencies (internal resolver) │
└──────────────────────────────────────────────────────────────────────────────┘
Checking for already installed source dependencies...
-cdbs: missing
-debhelper: already installed (8.0.0 >= 8 is satisfied)
+debhelper: missing
+Using default version 8.1.2
zlib1g-dev: missing
Checking for source dependency conflicts...
-Installing positive dependencies: cdbs zlib1g-dev
+Installing positive dependencies: debhelper zlib1g-dev
Reading package lists...
Building dependency tree...
Reading state information...
+The following extra packages will be installed:
+ bsdmainutils file gettext gettext-base groff-base html2text intltool-debian
+ libcroco3 libglib2.0-0 libmagic1 libpcre3 libpipeline1 libunistring0 libxml2
+ man-db po-debconf
Suggested packages:
- devscripts doc-base
+ wamerican wordlist whois vacation dh-make gettext-doc groff less www-browser
+ libmail-box-perl
Recommended packages:
- autotools-dev
+ curl wget lynx-cur autopoint libglib2.0-data shared-mime-info xml-core
+ libmail-sendmail-perl
The following NEW packages will be installed:
- cdbs zlib1g-dev
+ bsdmainutils debhelper file gettext gettext-base groff-base html2text
+ intltool-debian libcroco3 libglib2.0-0 libmagic1 libpcre3 libpipeline1
+ libunistring0 libxml2 man-db po-debconf zlib1g-dev
+0 upgraded, 18 newly installed, 0 to remove and 15 not upgraded.
+Need to get 9737 kB of archives.
+After this operation, 30.4 MB of additional disk space will be used.
+Get:1 http://ftp.uk.debian.org/debian/ unstable/main bsdmainutils alpha 8.2.2 [215 kB]
+Get:2 http://ftp.uk.debian.org/debian/ unstable/main groff-base alpha 1.21-4 [1183 kB]
+Get:3 http://ftp.uk.debian.org/debian/ unstable/main libpipeline1 alpha 1.1.0-1 [39.4 kB]
+Get:4 http://ftp.uk.debian.org/debian/ unstable/main man-db alpha 2.5.9-4 [1070 kB]
+Get:5 http://ftp.uk.debian.org/debian/ unstable/main libmagic1 alpha 5.04-5 [243 kB]
+Get:6 http://ftp.uk.debian.org/debian/ unstable/main file alpha 5.04-5 [50.2 kB]
+Get:7 http://ftp.uk.debian.org/debian/ unstable/main gettext-base alpha 0.18.1.1-3 [160 kB]
+Get:8 http://ftp.uk.debian.org/debian/ unstable/main libpcre3 alpha 8.12-3 [285 kB]
+Get:9 http://ftp.uk.debian.org/debian/ unstable/main libxml2 alpha 2.7.8.dfsg-2 [901 kB]
+Get:10 http://ftp.uk.debian.org/debian/ unstable/main html2text alpha 1.3.2a-15 [111 kB]
+Get:11 http://ftp.uk.debian.org/debian/ unstable/main libglib2.0-0 alpha 2.28.1-1+b1 [1674 kB]
+Get:12 http://ftp.uk.debian.org/debian/ unstable/main libcroco3 alpha 0.6.2-1 [128 kB]
+Get:13 http://ftp.uk.debian.org/debian/ unstable/main libunistring0 alpha 0.9.3-3 [447 kB]
+Get:14 http://ftp.uk.debian.org/debian/ unstable/main gettext alpha 0.18.1.1-3 [2218 kB]
+Get:15 http://ftp.uk.debian.org/debian/ unstable/main intltool-debian all 0.35.0+20060710.1 [30.8 kB]
+Get:16 http://ftp.uk.debian.org/debian/ unstable/main po-debconf all 1.0.16+nmu1 [223 kB]
+Get:17 http://ftp.uk.debian.org/debian/ unstable/main debhelper all 8.1.2 [553 kB]
+Get:18 http://ftp.uk.debian.org/debian/ unstable/main zlib1g-dev alpha 1:1.2.3.4.dfsg-3 [206 kB]
debconf: delaying package configuration, since apt-utils is not installed
-0 upgraded, 2 newly installed, 0 to remove and 57 not upgraded.
-Need to get 0 B/1446 kB of archives.
-After this operation, 2179 kB of additional disk space will be used.
-Selecting previously deselected package cdbs.
-(Reading database ... 13772 files and directories currently installed.)
-Unpacking cdbs (from .../archives/cdbs_0.4.89_all.deb) ...
+Fetched 9737 kB in 2s (4761 kB/s)
+Selecting previously deselected package bsdmainutils.
+(Reading database ... 10140 files and directories currently installed.)
+Unpacking bsdmainutils (from .../bsdmainutils_8.2.2_alpha.deb) ...
+Selecting previously deselected package groff-base.
+Unpacking groff-base (from .../groff-base_1.21-4_alpha.deb) ...
+Selecting previously deselected package libpipeline1.
+Unpacking libpipeline1 (from .../libpipeline1_1.1.0-1_alpha.deb) ...
+Selecting previously deselected package man-db.
+Unpacking man-db (from .../man-db_2.5.9-4_alpha.deb) ...
+Selecting previously deselected package libmagic1.
+Unpacking libmagic1 (from .../libmagic1_5.04-5_alpha.deb) ...
+Selecting previously deselected package file.
+Unpacking file (from .../archives/file_5.04-5_alpha.deb) ...
+Selecting previously deselected package gettext-base.
+Unpacking gettext-base (from .../gettext-base_0.18.1.1-3_alpha.deb) ...
+Selecting previously deselected package libpcre3.
+Unpacking libpcre3 (from .../libpcre3_8.12-3_alpha.deb) ...
+Selecting previously deselected package libxml2.
+Unpacking libxml2 (from .../libxml2_2.7.8.dfsg-2_alpha.deb) ...
+Selecting previously deselected package html2text.
+Unpacking html2text (from .../html2text_1.3.2a-15_alpha.deb) ...
+Selecting previously deselected package libglib2.0-0.
+Unpacking libglib2.0-0 (from .../libglib2.0-0_2.28.1-1+b1_alpha.deb) ...
+Selecting previously deselected package libcroco3.
+Unpacking libcroco3 (from .../libcroco3_0.6.2-1_alpha.deb) ...
+Selecting previously deselected package libunistring0.
+Unpacking libunistring0 (from .../libunistring0_0.9.3-3_alpha.deb) ...
+Selecting previously deselected package gettext.
+Unpacking gettext (from .../gettext_0.18.1.1-3_alpha.deb) ...
+Selecting previously deselected package intltool-debian.
+Unpacking intltool-debian (from .../intltool-debian_0.35.0+20060710.1_all.deb) ...
+Selecting previously deselected package po-debconf.
+Unpacking po-debconf (from .../po-debconf_1.0.16+nmu1_all.deb) ...
+Selecting previously deselected package debhelper.
+Unpacking debhelper (from .../debhelper_8.1.2_all.deb) ...
Selecting previously deselected package zlib1g-dev.
Unpacking zlib1g-dev (from .../zlib1g-dev_1%3a1.2.3.4.dfsg-3_alpha.deb) ...
-Processing triggers for man-db ...
-Setting up cdbs (0.4.89) ...
+Setting up bsdmainutils (8.2.2) ...
+update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode.
+update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode.
+Setting up groff-base (1.21-4) ...
+Setting up libpipeline1 (1.1.0-1) ...
+Setting up man-db (2.5.9-4) ...
+Building database of manual pages ...
+Setting up libmagic1 (5.04-5) ...
+Setting up file (5.04-5) ...
+Setting up gettext-base (0.18.1.1-3) ...
+Setting up libpcre3 (8.12-3) ...
+Setting up libxml2 (2.7.8.dfsg-2) ...
+Setting up html2text (1.3.2a-15) ...
+Setting up libglib2.0-0 (2.28.1-1+b1) ...
+No schema files found: doing nothing.
+Setting up libcroco3 (0.6.2-1) ...
+Setting up libunistring0 (0.9.3-3) ...
+Setting up gettext (0.18.1.1-3) ...
+Setting up intltool-debian (0.35.0+20060710.1) ...
+Setting up po-debconf (1.0.16+nmu1) ...
+Setting up debhelper (8.1.2) ...
Setting up zlib1g-dev (1:1.2.3.4.dfsg-3) ...
Removing negative dependencies:
Checking correctness of source dependencies...
-Kernel: Linux 2.6.26-2-alpha-generic alpha (alpha)
-Toolchain package versions: libc6.1-dev_2.11.2-8 dpkg-dev_1.15.8.4 linux-libc-dev_2.6.32-30 gcc-4.4_4.4.5-10 g++-4.4_4.4.5-10 binutils_2.20.1-15 libstdc++6-4.4-dev_4.4.5-10 libstdc++6_4.4.5-10
-Package versions: apt_0.8.10 asciidoc_8.5.2-1 base-files_5.9 base-passwd_3.5.22 bash_4.1-3 binutils_2.20.1-15 binutils-dev_2.20.1-15 bsdmainutils_8.0.13 bsdutils_1:2.17.2-3.1 build-essential_11.5 bzip2_1.0.5-6 cdbs_0.4.89 coreutils_8.5-1 cpio_2.11-4 cpp_4:4.4.5-2 cpp-4.3_4.3.5-3 cpp-4.4_4.4.5-10 dash_0.5.5.1-7 debconf_1.5.35 debconf-i18n_1.5.35 debfoster_2.7-1.1 debhelper_8.0.0 debian-archive-keyring_2009.01.31 debianutils_3.4 diffutils_1:3.0-1 docbook-xml_4.5-7 docbook-xsl_1.75.2+dfsg-5 dpkg_1.15.8.4 dpkg-dev_1.15.8.4 e2fslibs_1.41.12-2 e2fsprogs_1.41.12-2 fakeroot_1.14.4-1 file_5.04-5 findutils_4.4.2-1 g++_4:4.4.4-2 g++-4.4_4.4.5-10 gcc_4:4.4.5-2 gcc-4.3_4.3.5-3 gcc-4.3-base_4.3.5-3 gcc-4.4_4.4.5-10 gcc-4.4-base_4.4.5-10 gettext_0.18.1.1-2 gettext-base_0.18.1.1-2 gnupg_1.4.10-4 gpgv_1.4.10-4 grep_2.6.3-3 groff-base_1.20.1-10 gzip_1.3.12-9 hostname_3.04 html2text_1.3.2a-15 initscripts_2.88dsf-11 insserv_1.14.0-2 intltool-debian_0.35.0+20060710.1 libacl1_2.2.49-4 libattr1_1:2.4.44-2 libblkid1_2.17.2-7 libbz2-1.0_1.0.5-6 libc-bin_2.11.2-8 libc-dev-bin_2.11.2-8 libc6.1_2.11.2-8 libc6.1-dev_2.11.2-8 libcomerr2_1.41.12-2 libcroco3_0.6.2-1 libdb4.7_4.7.25-10 libdb4.8_4.8.30-4 libdpkg-perl_1.15.8.4 libelf-dev_0.148-1 libelf1_0.148-1 libexpat1_2.0.1-7 libgc1c2_1:6.8-1.2 libgcc1_1:4.4.5-10 libgcrypt11_1.4.5-2 libgdbm3_1.8.3-9 libglib2.0-0_2.24.2-1 libgmp3c2_2:4.3.2+dfsg-1 libgomp1_4.4.5-10 libgpg-error0_1.10-0.3 liblocale-gettext-perl_1.05-6 liblzma2_5.0.0-2 libmagic1_5.04-5 libmpfr4_3.0.0-2 libncurses5_5.7+20100313-5 libncursesw5_5.7+20100313-5 libpam-modules_1.1.1-3 libpam-runtime_1.1.1-3 libpam0g_1.1.1-6.1 libpcre3_8.02-1.1 libreadline6_6.1-3 libselinux1_2.0.96-1 libsepol1_2.0.42-1 libsqlite3-0_3.7.4-2 libss2_1.41.12-2 libssl0.9.8_0.9.8o-4 libstdc++6_4.4.5-10 libstdc++6-4.4-dev_4.4.5-10 libtext-charwidth-perl_0.04-6 libtext-iconv-perl_1.7-2 libtext-wrapi18n-perl_0.06-7 libtimedate-perl_1.2000-1 libunistring0_0.9.3-3 libusb-0.1-4_2:0.1.12-16 libuuid1_2.17.2-9 libxml2_2.7.8.dfsg-2 libxml2-utils_2.7.7.dfsg-4 libxslt1.1_1.1.26-6 linux-libc-dev_2.6.32-30 login_1:4.1.4.2-1 lsb-base_3.2-23.1 make_3.81-8 man-db_2.5.7-4 mawk_1.3.3-15 mime-support_3.48-1 module-init-tools_3.12-1 mount_2.17.2-3.1 ncurses-base_5.7+20100313-2 ncurses-bin_5.7+20100313-5 passwd_1:4.1.4.2-1 patch_2.6-2 perl_5.10.1-17 perl-base_5.10.1-17 perl-modules_5.10.1-17 po-debconf_1.0.16 python_2.6.6-3+squeeze5 python-minimal_2.6.6-3+squeeze5 python2.6_2.6.6-8+b1 python2.6-minimal_2.6.6-8+b1 readline-common_6.1-3 sed_4.2.1-7 sensible-utils_0.0.4 sgml-base_1.26+nmu1 sgml-data_2.0.4 sudo_1.7.2p7-1 sysv-rc_2.88dsf-11 sysvinit_2.88dsf-11 sysvinit-utils_2.88dsf-11 tar_1.23-2.1 tzdata_2011a-1 util-linux_2.17.2-3.1 xml-core_0.13 xmlto_0.0.23-2 xsltproc_1.1.26-6 xz-utils_4.999.9beta+20100713-1 zlib1g_1:1.2.3.4.dfsg-3 zlib1g-dev_1:1.2.3.4.dfsg-3
+Kernel: Linux 2.6.32-bpo.5-alpha-generic alpha (alpha)
+Toolchain package versions: libc6.1-dev_2.11.2-13 dpkg-dev_1.15.8.10 linux-libc-dev_2.6.37-2 gcc-4.4_4.4.5-13 g++-4.4_4.4.5-13 binutils_2.21.0.20110302-1 libstdc++6-4.4-dev_4.4.5-13 libstdc++6_4.5.2-4
+Package versions: apt_0.8.11.5 base-files_6.1 base-passwd_3.5.22 bash_4.1-3 binutils_2.21.0.20110302-1 bsdmainutils_8.2.2 bsdutils_1:2.17.2-9.1 build-essential_11.5 bzip2_1.0.5-6 coreutils_8.5-1 cpp_4:4.4.5-3 cpp-4.4_4.4.5-13 dash_0.5.5.1-7.4 debconf_1.5.38 debconf-i18n_1.5.38 debfoster_2.7-1.1 debhelper_8.1.2 debian-archive-keyring_2010.08.28 debianutils_3.4.4 diffutils_1:3.0-1 dpkg_1.15.8.10 dpkg-dev_1.15.8.10 e2fslibs_1.41.12-2 e2fsprogs_1.41.12-2 fakeroot_1.14.5-2 file_5.04-5 findutils_4.4.2-1+b1 g++_4:4.4.5-3 g++-4.4_4.4.5-13 gcc_4:4.4.5-3 gcc-4.4_4.4.5-13 gcc-4.4-base_4.4.5-13 gcc-4.5-base_4.5.2-4 gettext_0.18.1.1-3 gettext-base_0.18.1.1-3 gnupg_1.4.11-3 gpgv_1.4.11-3 grep_2.6.3-3 groff-base_1.21-4 gzip_1.3.12-9 hostname_3.05 html2text_1.3.2a-15 initscripts_2.88dsf-13.1 insserv_1.14.0-2 intltool-debian_0.35.0+20060710.1 libacl1_2.2.49-4 libattr1_1:2.4.44-2 libblkid1_2.17.2-9.1 libbz2-1.0_1.0.5-6 libc-bin_2.11.2-13 libc-dev-bin_2.11.2-13 libc6.1_2.11.2-13 libc6.1-dev_2.11.2-13 libcomerr2_1.41.12-2 libcroco3_0.6.2-1 libdb4.7_4.7.25-12 libdb4.8_4.8.30-5 libdpkg-perl_1.15.8.10 libgc1c2_1:7.1-7 libgcc1_1:4.5.2-4 libgdbm3_1.8.3-9 libglib2.0-0_2.28.1-1+b1 libgmp3c2_2:4.3.2+dfsg-1 libgomp1_4.5.2-4 liblocale-gettext-perl_1.05-6 liblzma2_5.0.0-2 libmagic1_5.04-5 libmpfr4_3.0.0-7 libncurses5_5.8-1 libpam-modules_1.1.2-2 libpam-runtime_1.1.2-2 libpam0g_1.1.2-2 libpcre3_8.12-3 libpipeline1_1.1.0-1 libreadline6_6.1-3 libselinux1_2.0.96-1 libsepol1_2.0.42-1 libslang2_2.2.2-4 libss2_1.41.12-2 libstdc++6_4.5.2-4 libstdc++6-4.4-dev_4.4.5-13 libtext-charwidth-perl_0.04-6 libtext-iconv-perl_1.7-2 libtext-wrapi18n-perl_0.06-7 libtimedate-perl_1.2000-1 libunistring0_0.9.3-3 libusb-0.1-4_2:0.1.12-17 libuuid1_2.17.2-9.1 libxml2_2.7.8.dfsg-2 linux-libc-dev_2.6.37-2 login_1:4.1.4.2+svn3283-3 lsb-base_3.2-27 make_3.81-8 man-db_2.5.9-4 mawk_1.3.3-15 mount_2.17.2-9.1 ncurses-base_5.8-1 ncurses-bin_5.8-1 netbase_4.45 passwd_1:4.1.4.2+svn3283-3 patch_2.6.1-1 perl_5.10.1-17 perl-base_5.10.1-17 perl-modules_5.10.1-17 po-debconf_1.0.16+nmu1 readline-common_6.1-3 sed_4.2.1-9 sensible-utils_0.0.6 sudo_1.7.4p6-1 sysv-rc_2.88dsf-13.1 sysvinit_2.88dsf-13.1 sysvinit-utils_2.88dsf-13.1 tar_1.25-3 tzdata_2011b-2 util-linux_2.17.2-9.1 vim-common_2:7.3.035+hg~8fdc12103333-1 vim-tiny_2:7.3.035+hg~8fdc12103333-1 xz-utils_5.0.0-2 zlib1g_1:1.2.3.4.dfsg-3 zlib1g-dev_1:1.2.3.4.dfsg-3
┌──────────────────────────────────────────────────────────────────────────────┐
│ Build │
@@ -136,12 +220,12 @@ Unpack source
dpkg-source: warning: -sn is not a valid option for Dpkg::Source::Package::V3::quilt
gpgv: keyblock resource `/home/buildd/.gnupg/trustedkeys.gpg': file open error
-gpgv: Signature made Tue Feb 8 07:20:43 2011 UTC using RSA key ID 2295D502
+gpgv: Signature made Fri Mar 11 21:59:41 2011 UTC using DSA key ID C09FD35A
gpgv: Can't check signature: public key not found
-dpkg-source: warning: failed to verify signature on ./bwa_0.5.9-1.dsc
+dpkg-source: warning: failed to verify signature on ./bwa_0.5.9-2.dsc
dpkg-source: info: extracting bwa in bwa-0.5.9
dpkg-source: info: unpacking bwa_0.5.9.orig.tar.bz2
-dpkg-source: info: unpacking bwa_0.5.9-1.debian.tar.gz
+dpkg-source: info: unpacking bwa_0.5.9-2.debian.tar.gz
Check disc space
────────────────
@@ -156,154 +240,155 @@ dpkg-buildpackage: export CXXFLAGS from dpkg-buildflags (origin: vendor): -g -O2
dpkg-buildpackage: export FFLAGS from dpkg-buildflags (origin: vendor): -g -O2
dpkg-buildpackage: export LDFLAGS from dpkg-buildflags (origin: vendor):
dpkg-buildpackage: source package bwa
-dpkg-buildpackage: source version 0.5.9-1
+dpkg-buildpackage: source version 0.5.9-2
dpkg-source --before-build bwa-0.5.9
dpkg-buildpackage: host architecture alpha
/usr/bin/fakeroot debian/rules clean
-test -x debian/rules
-dh_testroot
-rm -f debian/stamp-makefile-build debian/stamp-makefile-install
-/usr/bin/make -C . CFLAGS="-g -O2 -g -Wall -O2" CXXFLAGS="-g -O2 -g -Wall -O2" CPPFLAGS="" LDFLAGS="" -k clean
-make[1]: Entering directory `/build/buildd-bwa_0.5.9-1-alpha-RA1JNc/bwa-0.5.9'
-make[2]: Entering directory `/build/buildd-bwa_0.5.9-1-alpha-RA1JNc/bwa-0.5.9'
+dh clean
+ dh_testdir
+ dh_auto_clean
+make[1]: Entering directory `/build/buildd-bwa_0.5.9-2-alpha-DYaNZK/bwa-0.5.9'
+make[2]: Entering directory `/build/buildd-bwa_0.5.9-2-alpha-DYaNZK/bwa-0.5.9'
rm -f gmon.out *.o a.out bwa *~ *.a
-make[2]: Leaving directory `/build/buildd-bwa_0.5.9-1-alpha-RA1JNc/bwa-0.5.9'
-make[2]: Entering directory `/build/buildd-bwa_0.5.9-1-alpha-RA1JNc/bwa-0.5.9/bwt_gen'
+make[2]: Leaving directory `/build/buildd-bwa_0.5.9-2-alpha-DYaNZK/bwa-0.5.9'
+make[2]: Entering directory `/build/buildd-bwa_0.5.9-2-alpha-DYaNZK/bwa-0.5.9/bwt_gen'
rm -f gmon.out *.o a.out *~ *.a
-make[2]: Leaving directory `/build/buildd-bwa_0.5.9-1-alpha-RA1JNc/bwa-0.5.9/bwt_gen'
-make[1]: Leaving directory `/build/buildd-bwa_0.5.9-1-alpha-RA1JNc/bwa-0.5.9'
-dh_clean
+make[2]: Leaving directory `/build/buildd-bwa_0.5.9-2-alpha-DYaNZK/bwa-0.5.9/bwt_gen'
+make[1]: Leaving directory `/build/buildd-bwa_0.5.9-2-alpha-DYaNZK/bwa-0.5.9'
+ dh_clean
debian/rules build
-test -x debian/rules
-mkdir -p "."
-/usr/bin/make -C . CFLAGS="-g -O2 -g -Wall -O2" CXXFLAGS="-g -O2 -g -Wall -O2" CPPFLAGS="" LDFLAGS=""
-make[1]: Entering directory `/build/buildd-bwa_0.5.9-1-alpha-RA1JNc/bwa-0.5.9'
-make[2]: Entering directory `/build/buildd-bwa_0.5.9-1-alpha-RA1JNc/bwa-0.5.9'
+dh build
+ dh_testdir
+ dh_auto_configure
+ dh_auto_build
+make[1]: Entering directory `/build/buildd-bwa_0.5.9-2-alpha-DYaNZK/bwa-0.5.9'
+make[2]: Entering directory `/build/buildd-bwa_0.5.9-2-alpha-DYaNZK/bwa-0.5.9'
make[2]: Nothing to be done for `lib'.
-make[2]: Leaving directory `/build/buildd-bwa_0.5.9-1-alpha-RA1JNc/bwa-0.5.9'
-make[2]: Entering directory `/build/buildd-bwa_0.5.9-1-alpha-RA1JNc/bwa-0.5.9/bwt_gen'
-gcc -c -g -O2 -g -Wall -O2 -DHAVE_PTHREAD bwt_gen.c -o bwt_gen.o
-gcc -c -g -O2 -g -Wall -O2 -DHAVE_PTHREAD QSufSort.c -o QSufSort.o
+make[2]: Leaving directory `/build/buildd-bwa_0.5.9-2-alpha-DYaNZK/bwa-0.5.9'
+make[2]: Entering directory `/build/buildd-bwa_0.5.9-2-alpha-DYaNZK/bwa-0.5.9/bwt_gen'
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD bwt_gen.c -o bwt_gen.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD QSufSort.c -o QSufSort.o
ar -cru libbwtgen.a bwt_gen.o QSufSort.o
-make[2]: Leaving directory `/build/buildd-bwa_0.5.9-1-alpha-RA1JNc/bwa-0.5.9/bwt_gen'
-gcc -c -g -O2 -g -Wall -O2 -DHAVE_PTHREAD utils.c -o utils.o
-gcc -c -g -O2 -g -Wall -O2 -DHAVE_PTHREAD bwt.c -o bwt.o
-gcc -c -g -O2 -g -Wall -O2 -DHAVE_PTHREAD bwtio.c -o bwtio.o
-gcc -c -g -O2 -g -Wall -O2 -DHAVE_PTHREAD bwtaln.c -o bwtaln.o
-gcc -c -g -O2 -g -Wall -O2 -DHAVE_PTHREAD bwtgap.c -o bwtgap.o
-gcc -c -g -O2 -g -Wall -O2 -DHAVE_PTHREAD is.c -o is.o
-gcc -c -g -O2 -g -Wall -O2 -DHAVE_PTHREAD bntseq.c -o bntseq.o
-gcc -c -g -O2 -g -Wall -O2 -DHAVE_PTHREAD bwtmisc.c -o bwtmisc.o
-gcc -c -g -O2 -g -Wall -O2 -DHAVE_PTHREAD bwtindex.c -o bwtindex.o
-gcc -c -g -O2 -g -Wall -O2 -DHAVE_PTHREAD stdaln.c -o stdaln.o
-gcc -c -g -O2 -g -Wall -O2 -DHAVE_PTHREAD simple_dp.c -o simple_dp.o
-gcc -c -g -O2 -g -Wall -O2 -DHAVE_PTHREAD bwaseqio.c -o bwaseqio.o
-gcc -c -g -O2 -g -Wall -O2 -DHAVE_PTHREAD bwase.c -o bwase.o
-gcc -c -g -O2 -g -Wall -O2 -DHAVE_PTHREAD bwape.c -o bwape.o
-gcc -c -g -O2 -g -Wall -O2 -DHAVE_PTHREAD kstring.c -o kstring.o
-gcc -c -g -O2 -g -Wall -O2 -DHAVE_PTHREAD cs2nt.c -o cs2nt.o
-gcc -c -g -O2 -g -Wall -O2 -DHAVE_PTHREAD bwtsw2_core.c -o bwtsw2_core.o
-gcc -c -g -O2 -g -Wall -O2 -DHAVE_PTHREAD bwtsw2_main.c -o bwtsw2_main.o
-gcc -c -g -O2 -g -Wall -O2 -DHAVE_PTHREAD bwtsw2_aux.c -o bwtsw2_aux.o
-gcc -c -g -O2 -g -Wall -O2 -DHAVE_PTHREAD bwt_lite.c -o bwt_lite.o
-gcc -c -g -O2 -g -Wall -O2 -DHAVE_PTHREAD bwtsw2_chain.c -o bwtsw2_chain.o
-gcc -c -g -O2 -g -Wall -O2 -DHAVE_PTHREAD bamlite.c -o bamlite.o
-gcc -c -g -O2 -g -Wall -O2 -DHAVE_PTHREAD main.c -o main.o
-gcc -g -O2 -g -Wall -O2 -DHAVE_PTHREAD utils.o bwt.o bwtio.o bwtaln.o bwtgap.o is.o bntseq.o bwtmisc.o bwtindex.o stdaln.o simple_dp.o bwaseqio.o bwase.o bwape.o kstring.o cs2nt.o bwtsw2_core.o bwtsw2_main.o bwtsw2_aux.o bwt_lite.o bwtsw2_chain.o bamlite.o main.o -o bwa -lm -lz -lpthread -Lbwt_gen -lbwtgen
+make[2]: Leaving directory `/build/buildd-bwa_0.5.9-2-alpha-DYaNZK/bwa-0.5.9/bwt_gen'
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD utils.c -o utils.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD bwt.c -o bwt.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD bwtio.c -o bwtio.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD bwtaln.c -o bwtaln.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD bwtgap.c -o bwtgap.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD is.c -o is.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD bntseq.c -o bntseq.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD bwtmisc.c -o bwtmisc.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD bwtindex.c -o bwtindex.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD stdaln.c -o stdaln.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD simple_dp.c -o simple_dp.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD bwaseqio.c -o bwaseqio.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD bwase.c -o bwase.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD bwape.c -o bwape.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD kstring.c -o kstring.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD cs2nt.c -o cs2nt.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD bwtsw2_core.c -o bwtsw2_core.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD bwtsw2_main.c -o bwtsw2_main.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD bwtsw2_aux.c -o bwtsw2_aux.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD bwt_lite.c -o bwt_lite.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD bwtsw2_chain.c -o bwtsw2_chain.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD bamlite.c -o bamlite.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD main.c -o main.o
+gcc -g -Wall -O2 -DHAVE_PTHREAD utils.o bwt.o bwtio.o bwtaln.o bwtgap.o is.o bntseq.o bwtmisc.o bwtindex.o stdaln.o simple_dp.o bwaseqio.o bwase.o bwape.o kstring.o cs2nt.o bwtsw2_core.o bwtsw2_main.o bwtsw2_aux.o bwt_lite.o bwtsw2_chain.o bamlite.o main.o -o bwa -lm -lz -lpthread -Lbwt_gen -lbwtgen
+make[1]: Leaving directory `/build/buildd-bwa_0.5.9-2-alpha-DYaNZK/bwa-0.5.9'
+ dh_auto_test
/usr/bin/fakeroot debian/rules binary-arch
-make[1]: Leaving directory `/build/buildd-bwa_0.5.9-1-alpha-RA1JNc/bwa-0.5.9'
-touch debian/stamp-makefile-build
-DEB_MAKE_CHECK_TARGET unset, not running checks
-test -x debian/rules
-dh_testroot
-dh_prep
-dh_installdirs -A
-mkdir -p "."
-DEB_MAKE_CHECK_TARGET unset, not running checks
-DEB_MAKE_INSTALL_TARGET unset, skipping default makefile.mk common-install target
-Adding cdbs dependencies to debian/bwa.substvars
-dh_installdirs -pbwa
-dh_installdocs -pbwa ./README ./NEWS
-dh_installexamples -pbwa
-dh_installman -pbwa
-dh_installinfo -pbwa
-dh_installmenu -pbwa
-dh_installcron -pbwa
-dh_installinit -pbwa
-dh_installdebconf -pbwa
-dh_installemacsen -pbwa
-dh_installcatalogs -pbwa
-dh_installpam -pbwa
-dh_installlogrotate -pbwa
-dh_installlogcheck -pbwa
-dh_installchangelogs -pbwa ./ChangeLog
-dh_installudev -pbwa
-dh_lintian -pbwa
-dh_install -pbwa
-dh_link -pbwa
-dh_installmime -pbwa
-dh_strip -pbwa
-dh_compress -pbwa
-dh_fixperms -pbwa
-dh_makeshlibs -pbwa
-dh_installdeb -pbwa
-dh_perl -pbwa
-dh_shlibdeps -pbwa
-dh_gencontrol -pbwa
+dh binary-arch
+ dh_testroot -a
+ dh_prep -a
+ dh_installdirs -a
+ dh_auto_install -a
+ dh_install -a
+ dh_installdocs -a
+ dh_installchangelogs -a
+ dh_installexamples -a
+ dh_installman -a
+ dh_installcatalogs -a
+ dh_installcron -a
+ dh_installdebconf -a
+ dh_installemacsen -a
+ dh_installifupdown -a
+ dh_installinfo -a
+ dh_installinit -a
+ dh_installmenu -a
+ dh_installmime -a
+ dh_installmodules -a
+ dh_installlogcheck -a
+ dh_installlogrotate -a
+ dh_installpam -a
+ dh_installppp -a
+ dh_installudev -a
+ dh_installwm -a
+ dh_installxfonts -a
+ dh_bugfiles -a
+ dh_lintian -a
+ dh_gconf -a
+ dh_icons -a
+ dh_perl -a
+ dh_usrlocal -a
+ dh_link -a
+ dh_compress -a
+ dh_fixperms -a
+ dh_strip -a
+ dh_makeshlibs -a
+ dh_shlibdeps -a
+ dh_installdeb -a
+ dh_gencontrol -a
dpkg-gencontrol: warning: package bwa: unused substitution variable ${perl:Depends}
-dh_md5sums -pbwa
-dh_builddeb -pbwa
-dpkg-deb: building package `bwa' in `../bwa_0.5.9-1_alpha.deb'.
- dpkg-genchanges -B -mDebian Build Daemon <buildd_alpha-goedel at buildd.debian.org> >../bwa_0.5.9-1_alpha.changes
+ dh_md5sums -a
+ dh_builddeb -a
+dpkg-deb: building package `bwa' in `../bwa_0.5.9-2_alpha.deb'.
+ dpkg-genchanges -B -malpha Build Daemon (goetz) <buildd_alpha-goetz at buildd.debian.org> >../bwa_0.5.9-2_alpha.changes
dpkg-genchanges: arch-specific upload - not including arch-independent packages
dpkg-genchanges: binary-only upload - not including any source code
dpkg-source --after-build bwa-0.5.9
dpkg-buildpackage: binary only upload (no source included)
────────────────────────────────────────────────────────────────────────────────
-Build finished at 20110208-1119
+Build finished at 20110312-0758
-bwa_0.5.9-1_alpha.changes:
+bwa_0.5.9-2_alpha.changes:
Format: 1.8
-Date: Tue, 08 Feb 2011 16:11:12 +0900
+Date: Fri, 11 Mar 2011 22:49:07 +0100
Source: bwa
Binary: bwa
Architecture: alpha
-Version: 0.5.9-1
+Version: 0.5.9-2
Distribution: sid
Urgency: low
-Maintainer: Debian Build Daemon <buildd_alpha-goedel at buildd.debian.org>
-Changed-By: Charles Plessy <plessy at debian.org>
+Maintainer: alpha Build Daemon (goetz) <buildd_alpha-goetz at buildd.debian.org>
+Changed-By: Andreas Tille <tille at debian.org>
Description:
bwa - Burrows-Wheeler Aligner
Changes:
- bwa (0.5.9-1) unstable; urgency=low
+ bwa (0.5.9-2) unstable; urgency=low
.
- * New usptream release
- - Upstream moved to GitHub (debian/upstream-metadata.yaml).
- - Checked copyright; one file was removed (debian/copyright).
- * Migrated the Debian source package to Git (debian/control).
- * Use Debhelper 8 (debian/control, debian/compat).
+ * Watchfile should not regard rc releases.
+ * Drop cdbs in favour of dh
Checksums-Sha1:
- 7bac348943c694fc753bc9c66fbcdb9b9d90e9dc 161460 bwa_0.5.9-1_alpha.deb
+ 173b89457784ac797ec3a4c64c0fbdb749f79722 161924 bwa_0.5.9-2_alpha.deb
Checksums-Sha256:
- bfabc531d5e68bab76e120df80400fda5f184cf9db06cc25215b144252cdb7e8 161460 bwa_0.5.9-1_alpha.deb
+ f428e2da20d729617412303504384164ed9bcd331582cc2a39f7653d9838b07f 161924 bwa_0.5.9-2_alpha.deb
Files:
- a6e4708ac6d5aaccf3bfdd82579463d6 161460 science optional bwa_0.5.9-1_alpha.deb
+ 4f6aab22b9befbb22c0f22570f4e846c 161924 science optional bwa_0.5.9-2_alpha.deb
┌──────────────────────────────────────────────────────────────────────────────┐
│ Package contents │
└──────────────────────────────────────────────────────────────────────────────┘
-bwa_0.5.9-1_alpha.deb
+bwa_0.5.9-2_alpha.deb
─────────────────────
new debian package, version 2.0.
- size 161460 bytes: control archive= 973 bytes.
+ size 161924 bytes: control archive= 980 bytes.
776 bytes, 17 lines control
615 bytes, 10 lines md5sums
Package: bwa
- Version: 0.5.9-1
+ Version: 0.5.9-2
Architecture: alpha
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
Installed-Size: 364
@@ -320,25 +405,25 @@ bwa_0.5.9-1_alpha.deb
to around 100 kbp. Both algorithms do gapped alignment. They are usually more
accurate and faster on queries with low error rates.
-drwxr-xr-x root/root 0 2011-02-08 11:19 ./
-drwxr-xr-x root/root 0 2011-02-08 11:19 ./usr/
-drwxr-xr-x root/root 0 2011-02-08 11:19 ./usr/share/
-drwxr-xr-x root/root 0 2011-02-08 11:19 ./usr/share/doc/
-drwxr-xr-x root/root 0 2011-02-08 11:19 ./usr/share/doc/bwa/
+drwxr-xr-x root/root 0 2011-03-12 07:58 ./
+drwxr-xr-x root/root 0 2011-03-12 07:58 ./usr/
+drwxr-xr-x root/root 0 2011-03-12 07:58 ./usr/bin/
+-rwxr-xr-x root/root 249688 2011-03-12 07:58 ./usr/bin/bwa
+drwxr-xr-x root/root 0 2011-03-12 07:58 ./usr/share/
+drwxr-xr-x root/root 0 2011-03-12 07:58 ./usr/share/doc/
+drwxr-xr-x root/root 0 2011-03-12 07:58 ./usr/share/doc/bwa/
+-rw-r--r-- root/root 957 2011-03-11 21:54 ./usr/share/doc/bwa/changelog.Debian.gz
+-rw-r--r-- root/root 17912 2011-01-25 00:00 ./usr/share/doc/bwa/changelog.gz
-rw-r--r-- root/root 5857 2011-01-25 00:00 ./usr/share/doc/bwa/NEWS.gz
--rw-r--r-- root/root 634 2011-01-25 00:00 ./usr/share/doc/bwa/README
-rw-r--r-- root/root 2676 2011-02-08 07:09 ./usr/share/doc/bwa/copyright
--rw-r--r-- root/root 17912 2011-01-25 00:00 ./usr/share/doc/bwa/changelog.gz
+-rw-r--r-- root/root 634 2011-01-25 00:00 ./usr/share/doc/bwa/README
-rw-r--r-- root/root 17912 2011-01-25 00:00 ./usr/share/doc/bwa/ChangeLog.gz
--rw-r--r-- root/root 881 2011-02-08 07:11 ./usr/share/doc/bwa/changelog.Debian.gz
-drwxr-xr-x root/root 0 2011-02-08 11:19 ./usr/share/man/
-drwxr-xr-x root/root 0 2011-02-08 11:19 ./usr/share/man/man1/
--rw-r--r-- root/root 7554 2011-02-08 11:19 ./usr/share/man/man1/bwa.1.gz
-drwxr-xr-x root/root 0 2011-02-08 11:19 ./usr/share/bwa/
--rwxr-xr-x root/root 3176 2011-01-25 00:00 ./usr/share/bwa/solid2fastq.pl
+drwxr-xr-x root/root 0 2011-03-12 07:58 ./usr/share/man/
+drwxr-xr-x root/root 0 2011-03-12 07:58 ./usr/share/man/man1/
+-rw-r--r-- root/root 7554 2011-03-12 07:58 ./usr/share/man/man1/bwa.1.gz
+drwxr-xr-x root/root 0 2011-03-12 07:58 ./usr/share/bwa/
-rwxr-xr-x root/root 616 2011-01-25 00:00 ./usr/share/bwa/qualfa2fq.pl
-drwxr-xr-x root/root 0 2011-02-08 11:19 ./usr/bin/
--rwxr-xr-x root/root 249688 2011-02-08 11:19 ./usr/bin/bwa
+-rwxr-xr-x root/root 3176 2011-01-25 00:00 ./usr/share/bwa/solid2fastq.pl
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -347,12 +432,9 @@ drwxr-xr-x root/root 0 2011-02-08 11:19 ./usr/bin/
Built successfully
────────────────────────────────────────────────────────────────────────────────
-Purging /var/lib/schroot/mount/sid-alpha-sbuild-33a5461a-cb7a-41b3-85a6-02c69a43ad38/build/buildd-bwa_0.5.9-1-alpha-RA1JNc
-(Reading database ... 13852 files and directories currently installed.)
-Removing cdbs ...
-Removing zlib1g-dev ...
-Processing triggers for man-db ...
+Purging /var/lib/schroot/mount/sid-alpha-sbuild-dbcd01c7-3fb3-4738-ac87-614bbfa2aa7f/build/buildd-bwa_0.5.9-2-alpha-DYaNZK
+Not removing build depends: cloned chroot in use
────────────────────────────────────────────────────────────────────────────────
-Finished at 20110208-1119
-Build needed 00:01:34, 3244k disc space
+Finished at 20110312-0758
+Build needed 00:02:34, 3244k disc space
diff --git a/armel.log b/armel.log
index 6836120..0dc0865 100644
--- a/armel.log
+++ b/armel.log
@@ -1,63 +1,65 @@
-From buildd at ancina.debian.org Tue Feb 08 11:22:18 2011
+From buildd at ancina.debian.org Sat Mar 12 16:42:51 2011
Return-path: <buildd at ancina.debian.org>
-Received: from kokkonen.debian.org ([2001:41b8:202:deb:216:35ff:fec4:6340])
+Received: from merikanto.debian.org ([2001:858:2:2:216:35ff:fec4:a49a])
from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
- CN=kokkonen.debian.org,
- EMAIL=hostmaster at kokkonen.debian.org (verified)
+ CN=merikanto.debian.org,
+ EMAIL=hostmaster at merikanto.debian.org (verified)
by grieg.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
(Exim 4.69) (envelope-from <buildd at ancina.debian.org>)
- id 1PmleD-0006xl-Lo
- for logs at buildd.debian.org; Tue, 08 Feb 2011 11:22:17 +0000
+ id 1PyRtz-0001RD-Av
+ for logs at buildd.debian.org; Sat, 12 Mar 2011 16:42:51 +0000
Received: from ancina.ugent.be ([157.193.39.13] helo=ancina.debian.org)
from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
CN=ancina.debian.org, EMAIL=hostmaster at ancina.debian.org (verified)
- by kokkonen.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
+ by merikanto.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
(Exim 4.69) (envelope-from <buildd at ancina.debian.org>)
- id 1PmleC-0005IH-Oe; Tue, 08 Feb 2011 11:22:16 +0000
+ id 1PyRtw-0004dl-32; Sat, 12 Mar 2011 16:42:48 +0000
Received: from buildd by ancina.debian.org with local (Exim 4.69)
(envelope-from <buildd at ancina.debian.org>)
- id 1Pmle7-0002RE-2X; Tue, 08 Feb 2011 11:22:11 +0000
+ id 1PyRtq-0006mX-43; Sat, 12 Mar 2011 16:42:42 +0000
From: Build Daemon <buildd at ancina.debian.org>
To: nchip at kos.to, logs at buildd.debian.org, zumbi at kos.to
-Subject: Log for successful build of bwa_0.5.9-1 on armel (dist=sid)
+Subject: Log for successful build of bwa_0.5.9-2 on armel (dist=sid)
Content-Type: text/plain; charset=UTF-8
Content-Transfer-Encoding: 8bit
-Message-Id: <E1Pmle7-0002RE-2X at ancina.debian.org>
-Date: Tue, 08 Feb 2011 11:22:11 +0000
+Message-Id: <E1PyRtq-0006mX-43 at ancina.debian.org>
+Date: Sat, 12 Mar 2011 16:42:42 +0000
Delivered-To: logs at buildd.debian.org
-sbuild (Debian sbuild) 0.60.0 (23 Feb 2010) on ancina.debian.org
+sbuild (Debian sbuild) 0.60.5 (14 Nov 2010) on ancina.debian.org
╔══════════════════════════════════════════════════════════════════════════════╗
-║ bwa 0.5.9-1 (armel) 08 Feb 2011 11:19 ║
+║ bwa 0.5.9-2 (armel) 12 Mar 2011 16:39 ║
╚══════════════════════════════════════════════════════════════════════════════╝
Package: bwa
-Version: 0.5.9-1
+Version: 0.5.9-2
Architecture: armel
-Chroot Build Dir: /var/lib/schroot/mount/sid-armel-sbuild-c0cc5792-ce4c-46e8-99a7-f7302d614395/build/buildd-bwa_0.5.9-1-armel-ykOV5b
-Start Time: 20110208-1119
-Hit http://ftp.de.debian.org sid Release.gpg
-Ign http://ftp.de.debian.org/debian/ sid/contrib Translation-en
-Ign http://ftp.de.debian.org/debian/ sid/main Translation-en
-Hit http://ftp.de.debian.org sid Release
-Hit http://incoming.debian.org sid Release.gpg
-Ign http://incoming.debian.org/debian/ sid/contrib Translation-en
-Ign http://incoming.debian.org/debian/ sid/main Translation-en
+Chroot Build Dir: /var/lib/schroot/mount/sid-armel-sbuild-759e875c-3a5c-4544-8c5b-9dbf30d57b9b/build/buildd-bwa_0.5.9-2-armel-i0oXM5
+Start Time: 20110312-1639
+Hit http://ftp.de.debian.org sid InRelease
+Hit http://incoming.debian.org sid InRelease
+Ign http://incoming.debian.org InRelease
+Get:1 http://incoming.debian.org Release.gpg [835 B]
+Get:2 http://incoming.debian.org Release [1604 B]
Hit http://ftp.de.debian.org sid/main Sources/DiffIndex
-Hit http://incoming.debian.org Release.gpg
-Ign http://incoming.debian.org/buildd-unstable/ Translation-en
-Hit http://incoming.debian.org sid Release
Hit http://ftp.de.debian.org sid/contrib Sources/DiffIndex
Hit http://ftp.de.debian.org sid/main armel Packages/DiffIndex
Hit http://ftp.de.debian.org sid/contrib armel Packages/DiffIndex
-Hit http://incoming.debian.org Release
+Ign http://ftp.de.debian.org sid/contrib TranslationIndex
+Hit http://ftp.de.debian.org sid/main TranslationIndex
Hit http://incoming.debian.org sid/main Sources/DiffIndex
+Ign http://ftp.de.debian.org sid/contrib Translation-en
Hit http://incoming.debian.org sid/contrib Sources/DiffIndex
Hit http://incoming.debian.org sid/main armel Packages/DiffIndex
Hit http://incoming.debian.org sid/contrib armel Packages/DiffIndex
-Hit http://incoming.debian.org Sources
-Hit http://incoming.debian.org Packages
+Ign http://incoming.debian.org sid/contrib TranslationIndex
+Hit http://incoming.debian.org sid/main TranslationIndex
+Get:3 http://incoming.debian.org Sources [29.0 kB]
+Get:4 http://incoming.debian.org Packages [391 kB]
+Ign http://incoming.debian.org Translation-en
+Ign http://incoming.debian.org sid/contrib Translation-en
+Fetched 423 kB in 9s (43.2 kB/s)
Reading package lists...
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -79,54 +81,54 @@ Reading state information...
NOTICE: 'bwa' packaging is maintained in the 'Git' version control system at:
git://git.debian.org/git/debian-med/bwa.git
Need to get 119 kB of source archives.
-Get:1 http://incoming.debian.org/buildd-unstable/ bwa 0.5.9-1 (dsc) [1894 B]
-Get:2 http://incoming.debian.org/buildd-unstable/ bwa 0.5.9-1 (tar) [114 kB]
-Get:3 http://incoming.debian.org/buildd-unstable/ bwa 0.5.9-1 (diff) [3651 B]
-Fetched 119 kB in 0s (165 kB/s)
+Get:1 http://ftp.de.debian.org/debian/ sid/main bwa 0.5.9-2 (dsc) [1245 B]
+Get:2 http://ftp.de.debian.org/debian/ sid/main bwa 0.5.9-2 (tar) [114 kB]
+Get:3 http://ftp.de.debian.org/debian/ sid/main bwa 0.5.9-2 (diff) [3828 B]
+Fetched 119 kB in 0s (458 kB/s)
Download complete and in download only mode
Check arch
──────────
** Using build dependencies supplied by package:
-Build-Depends: cdbs, debhelper (>= 8), zlib1g-dev
+Build-Depends: debhelper (>= 8), zlib1g-dev
┌──────────────────────────────────────────────────────────────────────────────┐
│ Install build dependencies (internal resolver) │
└──────────────────────────────────────────────────────────────────────────────┘
Checking for already installed source dependencies...
-cdbs: missing
debhelper: missing
-Using default version 8.1.0
+Using default version 8.1.2
zlib1g-dev: missing
Checking for source dependency conflicts...
-Installing positive dependencies: cdbs debhelper zlib1g-dev
+Installing positive dependencies: debhelper zlib1g-dev
Reading package lists...
Building dependency tree...
Reading state information...
The following extra packages will be installed:
file gettext gettext-base groff-base html2text intltool-debian libcroco3
- libglib2.0-0 libmagic1 libunistring0 libxml2 man-db po-debconf
+ libglib2.0-0 libmagic1 libpipeline1 libunistring0 libxml2 man-db po-debconf
Suggested packages:
- devscripts doc-base dh-make gettext-doc groff less www-browser
- libmail-box-perl
+ dh-make gettext-doc groff less www-browser libmail-box-perl
Recommended packages:
- autotools-dev curl wget lynx-cur autopoint libglib2.0-data shared-mime-info
- xml-core libmail-sendmail-perl
+ curl wget lynx-cur autopoint libglib2.0-data shared-mime-info xml-core
+ libmail-sendmail-perl
The following NEW packages will be installed:
- cdbs debhelper file gettext gettext-base groff-base html2text
- intltool-debian libcroco3 libglib2.0-0 libmagic1 libunistring0 libxml2
- man-db po-debconf zlib1g-dev
+ debhelper file gettext gettext-base groff-base html2text intltool-debian
+ libcroco3 libglib2.0-0 libmagic1 libpipeline1 libunistring0 libxml2 man-db
+ po-debconf zlib1g-dev
debconf: delaying package configuration, since apt-utils is not installed
-0 upgraded, 16 newly installed, 0 to remove and 26 not upgraded.
-Need to get 0 B/9382 kB of archives.
-After this operation, 26.5 MB of additional disk space will be used.
+0 upgraded, 16 newly installed, 0 to remove and 3 not upgraded.
+Need to get 0 B/8436 kB of archives.
+After this operation, 25.3 MB of additional disk space will be used.
Selecting previously deselected package groff-base.
-(Reading database ... 10747 files and directories currently installed.)
-Unpacking groff-base (from .../groff-base_1.20.1-10_armel.deb) ...
+(Reading database ... 10888 files and directories currently installed.)
+Unpacking groff-base (from .../groff-base_1.21-4_armel.deb) ...
+Selecting previously deselected package libpipeline1.
+Unpacking libpipeline1 (from .../libpipeline1_1.1.0-1_armel.deb) ...
Selecting previously deselected package man-db.
-Unpacking man-db (from .../man-db_2.5.7-8_armel.deb) ...
+Unpacking man-db (from .../man-db_2.5.9-4_armel.deb) ...
Selecting previously deselected package libmagic1.
Unpacking libmagic1 (from .../libmagic1_5.04-5_armel.deb) ...
Selecting previously deselected package file.
@@ -138,7 +140,7 @@ Unpacking libxml2 (from .../libxml2_2.7.8.dfsg-2_armel.deb) ...
Selecting previously deselected package html2text.
Unpacking html2text (from .../html2text_1.3.2a-15_armel.deb) ...
Selecting previously deselected package libglib2.0-0.
-Unpacking libglib2.0-0 (from .../libglib2.0-0_2.24.2-1_armel.deb) ...
+Unpacking libglib2.0-0 (from .../libglib2.0-0_2.28.1-1+b1_armel.deb) ...
Selecting previously deselected package libcroco3.
Unpacking libcroco3 (from .../libcroco3_0.6.2-1_armel.deb) ...
Selecting previously deselected package libunistring0.
@@ -150,33 +152,32 @@ Unpacking intltool-debian (from .../intltool-debian_0.35.0+20060710.1_all.deb) .
Selecting previously deselected package po-debconf.
Unpacking po-debconf (from .../po-debconf_1.0.16+nmu1_all.deb) ...
Selecting previously deselected package debhelper.
-Unpacking debhelper (from .../debhelper_8.1.0_all.deb) ...
-Selecting previously deselected package cdbs.
-Unpacking cdbs (from .../archives/cdbs_0.4.89_all.deb) ...
+Unpacking debhelper (from .../debhelper_8.1.2_all.deb) ...
Selecting previously deselected package zlib1g-dev.
Unpacking zlib1g-dev (from .../zlib1g-dev_1%3a1.2.3.4.dfsg-3_armel.deb) ...
-Setting up groff-base (1.20.1-10) ...
-Setting up man-db (2.5.7-8) ...
+Setting up groff-base (1.21-4) ...
+Setting up libpipeline1 (1.1.0-1) ...
+Setting up man-db (2.5.9-4) ...
Building database of manual pages ...
Setting up libmagic1 (5.04-5) ...
Setting up file (5.04-5) ...
Setting up gettext-base (0.18.1.1-3) ...
Setting up libxml2 (2.7.8.dfsg-2) ...
Setting up html2text (1.3.2a-15) ...
-Setting up libglib2.0-0 (2.24.2-1) ...
+Setting up libglib2.0-0 (2.28.1-1+b1) ...
+No schema files found: doing nothing.
Setting up libcroco3 (0.6.2-1) ...
Setting up libunistring0 (0.9.3-3) ...
Setting up gettext (0.18.1.1-3) ...
Setting up intltool-debian (0.35.0+20060710.1) ...
Setting up po-debconf (1.0.16+nmu1) ...
-Setting up debhelper (8.1.0) ...
-Setting up cdbs (0.4.89) ...
+Setting up debhelper (8.1.2) ...
Setting up zlib1g-dev (1:1.2.3.4.dfsg-3) ...
Removing negative dependencies:
Checking correctness of source dependencies...
Kernel: Linux 2.6.31-rc9 armel (armv5tel)
-Toolchain package versions: libc6-dev_2.11.2-8 dpkg-dev_1.15.8.8 linux-libc-dev_2.6.32-29 gcc-4.4_4.4.5-10 g++-4.4_4.4.5-10 binutils_2.20.1-15 libstdc++6-4.4-dev_4.4.5-10 libstdc++6_4.4.5-10
-Package versions: apt_0.8.10 base-files_6.0 base-passwd_3.5.22 bash_4.1-3 binutils_2.20.1-15 bsdmainutils_8.2.1 bsdutils_1:2.17.2-6 build-essential_11.5 bzip2_1.0.5-6 cdbs_0.4.89 coreutils_8.5-1 cpio_2.11-6 cpp_4:4.4.5-2 cpp-4.4_4.4.5-10 dash_0.5.5.1-7.4 debconf_1.5.37 debconf-i18n_1.5.37 debfoster_2.7-1.1 debhelper_8.1.0 debian-archive-keyring_2010.08.28 debianutils_3.4.2 diffutils_1:3.0-1 dmsetup_2:1.02.48-4 dpkg_1.15.8.8 dpkg-dev_1.15.8.8 e2fslibs_1.41.12-2 e2fsprogs_1.41.12-2 fakeroot_1.14.5-1 file_5.04-5 findutils_4.4.2-1+b1 g++_4:4.4.5-2 g++-4.4_4.4.5-10 gawk_1:3.1.7.dfsg-5 gcc_4:4.4.5-2 gcc-4.2-base_4.2.4-6 gcc-4.4_4.4.5-10 gcc-4.4-base_4.4.5-10 gettext_0.18.1.1-3 gettext-base_0.18.1.1-3 gnupg_1.4.10-4 gpgv_1.4.10-4 grep_2.6.3-3 groff-base_1.20.1-10 gzip_1.3.12-9 hostname_3.05 html2text_1.3.2a-15 initscripts_2.88dsf-13.1 insserv_1.14.0-2 intltool-debian_0.35.0+20060710.1 libacl1_2.2.49-4 libattr1_1:2.4.44-2 libblkid1_2.17.2-6 libbz2-1.0_1.0.5-6 libc-bin_2.11.2-8 libc-dev-bin_2.11.2-8 libc6_2.11.2-8 libc6-dev_2.11.2-8 libcomerr2_1.41.12-2 libcroco3_0.6.2-1 libdb4.7_4.7.25-10 libdb4.8_4.8.30-4 libdevmapper1.02.1_2:1.02.48-4 libdpkg-perl_1.15.8.8 libgc1c2_1:6.8-1.2 libgcc1_1:4.4.5-10 libgcrypt11_1.4.5-2 libgdbm3_1.8.3-9 libglib2.0-0_2.24.2-1 libgmp3c2_2:4.3.2+dfsg-1 libgnutls26_2.10.4-2 libgomp1_4.4.5-10 libgpg-error0_1.10-0.3 libgpm2_1.20.4-3.3 libldap-2.4-2_2.4.23-7 liblocale-gettext-perl_1.05-6 liblzma2_5.0.0-2 libmagic1_5.04-5 libmpfr4_3.0.0-2 libncurses5_5.7+20100313-5 libncursesw5_5.7+20100313-5 libpam-modules_1.1.1-6.1 libpam-runtime_1.1.1-6.1 libpam0g_1.1.1-6.1 libpcre3_8.02-1.1 libpng12-0_1.2.44-1 libreadline6_6.1-3 libsasl2-2_2.1.23.dfsg1-7 libselinux1_2.0.96-1 libsepol1_2.0.42-1 libslang2_2.2.2-4 libss2_1.41.12-2 libssl0.9.8_0.9.8o-4 libstdc++6_4.4.5-10 libstdc++6-4.4-dev_4.4.5-10 libtasn1-3_2.7-1 libtext-charwidth-perl_0.04-6 libtext-iconv-perl_1.7-2 libtext-wrapi18n-perl_0.06-7 libtimedate-perl_1.2000-1 libudev0_164-4 libunistring0_0.9.3-3 libusb-0.1-4_2:0.1.12-17 libuuid1_2.17.2-9 libvolume-id1_0.141-2 libxml2_2.7.8.dfsg-2 linux-libc-dev_2.6.32-29 login_1:4.1.4.2+svn3283-2 lsb-base_3.2-26 make_3.81-8 man-db_2.5.7-8 mawk_1.3.3-15 mount_2.17.2-6 ncurses-base_5.7+20100313-5 ncurses-bin_5.7+20100313-5 netbase_4.44 nullmailer_1:1.04-1.2 passwd_1:4.1.4.2+svn3283-2 patch_2.6-3 perl_5.10.1-17 perl-base_5.10.1-17 perl-modules_5.10.1-17 po-debconf_1.0.16+nmu1 procps_1:3.2.8-10 psmisc_22.13-1 readline-common_6.1-3 sed_4.2.1-8 sensible-utils_0.0.6 sudo_1.7.4p4-5 sysv-rc_2.88dsf-13.1 sysvinit_2.88dsf-13.1 sysvinit-utils_2.88dsf-13.1 tar_1.25-3 tzdata_2011a-1 util-linux_2.17.2-6 wget_1.12-2.1 xz-utils_5.0.0-2 zlib1g_1:1.2.3.4.dfsg-3 zlib1g-dev_1:1.2.3.4.dfsg-3
+Toolchain package versions: libc6-dev_2.11.2-13 dpkg-dev_1.15.8.10 linux-libc-dev_2.6.37-2 gcc-4.5_4.5.2-5 g++-4.5_4.5.2-5 binutils_2.21.0.20110302-1 libstdc++6-4.5-dev_4.5.2-5 libstdc++6_4.5.2-5
+Package versions: apt_0.8.11.5 base-files_6.1 base-passwd_3.5.22 bash_4.1-3 binutils_2.21.0.20110302-1 bsdmainutils_8.2.2 bsdutils_1:2.17.2-9.1 build-essential_11.5 bzip2_1.0.5-6 coreutils_8.5-1 cpio_2.11-7 cpp_4:4.5.2-2 cpp-4.5_4.5.2-5 dash_0.5.5.1-7.4 debconf_1.5.38 debconf-i18n_1.5.38 debfoster_2.7-1.1 debhelper_8.1.2 debian-archive-keyring_2010.08.28 debianutils_3.4.4 diffutils_1:3.0-1 dmsetup_2:1.02.63-2 dpkg_1.15.8.10 dpkg-dev_1.15.8.10 e2fslibs_1.41.12-2 e2fsprogs_1.41.12-2 fakeroot_1.14.5-2 file_5.04-5 findutils_4.4.2-1+b1 g++_4:4.5.2-2 g++-4.5_4.5.2-5 gawk_1:3.1.7.dfsg-5 gcc_4:4.5.2-2 gcc-4.2-base_4.2.4-6 gcc-4.4-base_4.4.5-13 gcc-4.5_4.5.2-5 gcc-4.5-base_4.5.2-5 gettext_0.18.1.1-3 gettext-base_0.18.1.1-3 gnupg_1.4.11-3 gpgv_1.4.11-3 grep_2.6.3-3 groff-base_1.21-4 gzip_1.3.12-9 hostname_3.06 html2text_1.3.2a-15 initscripts_2.88dsf-13.1 insserv_1.14.0-2 intltool-debian_0.35.0+20060710.1 libacl1_2.2.49-4 libattr1_1:2.4.44-2 libblkid1_2.17.2-9.1 libbz2-1.0_1.0.5-6 libc-bin_2.11.2-13 libc-dev-bin_2.11.2-13 libc6_2.11.2-13 libc6-dev_2.11.2-13 libcloog-ppl0_0.15.9-2 libcomerr2_1.41.12-2 libcroco3_0.6.2-1 libdb4.7_4.7.25-12 libdb4.8_4.8.30-5 libdevmapper1.02.1_2:1.02.63-2 libdpkg-perl_1.15.8.10 libelfg0_0.8.13-1 libgc1c2_1:7.1-7 libgcc1_1:4.5.2-5 libgcrypt11_1.4.6-5 libgdbm3_1.8.3-9 libglib2.0-0_2.28.1-1+b1 libgmp10_2:5.0.1+dfsg-6 libgmp3c2_2:4.3.2+dfsg-1 libgmpxx4ldbl_2:5.0.1+dfsg-6 libgnutls26_2.10.5-1 libgomp1_4.5.2-5 libgpg-error0_1.10-0.3 libgpm2_1.20.4-3.3 libldap-2.4-2_2.4.23-7 liblocale-gettext-perl_1.05-6 liblzma2_5.0.0-2 libmagic1_5.04-5 libmpc2_0.9-2 libmpfr4_3.0.0-9 libncurses5_5.8+20110307-1 libncursesw5_5.8+20110307-1 libpam-modules_1.1.2-2 libpam-runtime_1.1.2-2 libpam0g_1.1.2-2 libpcre3_8.12-3 libpipeline1_1.1.0-1 libpng12-0_1.2.44-1 libppl-c2_0.10.2-9 libppl7_0.10.2-9 libreadline6_6.1-3 libsasl2-2_2.1.23.dfsg1-7 libselinux1_2.0.96-1 libsepol1_2.0.42-1 libslang2_2.2.2-4 libss2_1.41.12-2 libssl0.9.8_0.9.8o-5 libstdc++6_4.5.2-5 libstdc++6-4.5-dev_4.5.2-5 libtasn1-3_2.9-2 libtext-charwidth-perl_0.04-6 libtext-iconv-perl_1.7-2 libtext-wrapi18n-perl_0.06-7 libtimedate-perl_1.2000-1 libudev0_166-1 libunistring0_0.9.3-3 libusb-0.1-4_2:0.1.12-17 libuuid1_2.17.2-9.1 libvolume-id1_0.141-2 libxml2_2.7.8.dfsg-2 linux-libc-dev_2.6.37-2 login_1:4.1.4.2+svn3283-3 lsb-base_3.2-27 make_3.81-8 man-db_2.5.9-4 mawk_1.3.3-15 mount_2.17.2-9.1 ncurses-base_5.8+20110307-1 ncurses-bin_5.8+20110307-1 netbase_4.45 nullmailer_1:1.04-1.2 passwd_1:4.1.4.2+svn3283-3 patch_2.6.1-1 perl_5.10.1-17 perl-base_5.10.1-17 perl-modules_5.10.1-17 po-debconf_1.0.16+nmu1 procps_1:3.2.8-10 psmisc_22.13-1 readline-common_6.1-3 sed_4.2.1-9 sensible-utils_0.0.6 sudo_1.7.4p6-1 sysv-rc_2.88dsf-13.1 sysvinit_2.88dsf-13.1 sysvinit-utils_2.88dsf-13.1 tar_1.25-3 tzdata_2011c-1 util-linux_2.17.2-9.1 wget_1.12-2.1 xz-utils_5.0.0-2 zlib1g_1:1.2.3.4.dfsg-3 zlib1g-dev_1:1.2.3.4.dfsg-3
┌──────────────────────────────────────────────────────────────────────────────┐
│ Build │
@@ -188,12 +189,12 @@ Unpack source
dpkg-source: warning: -sn is not a valid option for Dpkg::Source::Package::V3::quilt
gpgv: keyblock resource `/home/buildd/.gnupg/trustedkeys.gpg': file open error
-gpgv: Signature made Tue Feb 8 07:20:43 2011 UTC using RSA key ID 2295D502
+gpgv: Signature made Fri Mar 11 21:59:41 2011 UTC using DSA key ID C09FD35A
gpgv: Can't check signature: public key not found
-dpkg-source: warning: failed to verify signature on ./bwa_0.5.9-1.dsc
+dpkg-source: warning: failed to verify signature on ./bwa_0.5.9-2.dsc
dpkg-source: info: extracting bwa in bwa-0.5.9
dpkg-source: info: unpacking bwa_0.5.9.orig.tar.bz2
-dpkg-source: info: unpacking bwa_0.5.9-1.debian.tar.gz
+dpkg-source: info: unpacking bwa_0.5.9-2.debian.tar.gz
Check disc space
────────────────
@@ -208,154 +209,155 @@ dpkg-buildpackage: export CXXFLAGS from dpkg-buildflags (origin: vendor): -g -O2
dpkg-buildpackage: export FFLAGS from dpkg-buildflags (origin: vendor): -g -O2
dpkg-buildpackage: export LDFLAGS from dpkg-buildflags (origin: vendor):
dpkg-buildpackage: source package bwa
-dpkg-buildpackage: source version 0.5.9-1
+dpkg-buildpackage: source version 0.5.9-2
dpkg-source --before-build bwa-0.5.9
dpkg-buildpackage: host architecture armel
/usr/bin/fakeroot debian/rules clean
-test -x debian/rules
-dh_testroot
-rm -f debian/stamp-makefile-build debian/stamp-makefile-install
-/usr/bin/make -C . CFLAGS="-g -O2 -g -Wall -O2" CXXFLAGS="-g -O2 -g -Wall -O2" CPPFLAGS="" LDFLAGS="" -k clean
-make[1]: Entering directory `/build/buildd-bwa_0.5.9-1-armel-ykOV5b/bwa-0.5.9'
-make[2]: Entering directory `/build/buildd-bwa_0.5.9-1-armel-ykOV5b/bwa-0.5.9'
+dh clean
+ dh_testdir
+ dh_auto_clean
+make[1]: Entering directory `/build/buildd-bwa_0.5.9-2-armel-i0oXM5/bwa-0.5.9'
+make[2]: Entering directory `/build/buildd-bwa_0.5.9-2-armel-i0oXM5/bwa-0.5.9'
rm -f gmon.out *.o a.out bwa *~ *.a
-make[2]: Leaving directory `/build/buildd-bwa_0.5.9-1-armel-ykOV5b/bwa-0.5.9'
-make[2]: Entering directory `/build/buildd-bwa_0.5.9-1-armel-ykOV5b/bwa-0.5.9/bwt_gen'
+make[2]: Leaving directory `/build/buildd-bwa_0.5.9-2-armel-i0oXM5/bwa-0.5.9'
+make[2]: Entering directory `/build/buildd-bwa_0.5.9-2-armel-i0oXM5/bwa-0.5.9/bwt_gen'
rm -f gmon.out *.o a.out *~ *.a
-make[2]: Leaving directory `/build/buildd-bwa_0.5.9-1-armel-ykOV5b/bwa-0.5.9/bwt_gen'
-make[1]: Leaving directory `/build/buildd-bwa_0.5.9-1-armel-ykOV5b/bwa-0.5.9'
-dh_clean
+make[2]: Leaving directory `/build/buildd-bwa_0.5.9-2-armel-i0oXM5/bwa-0.5.9/bwt_gen'
+make[1]: Leaving directory `/build/buildd-bwa_0.5.9-2-armel-i0oXM5/bwa-0.5.9'
+ dh_clean
debian/rules build
-test -x debian/rules
-mkdir -p "."
-/usr/bin/make -C . CFLAGS="-g -O2 -g -Wall -O2" CXXFLAGS="-g -O2 -g -Wall -O2" CPPFLAGS="" LDFLAGS=""
-make[1]: Entering directory `/build/buildd-bwa_0.5.9-1-armel-ykOV5b/bwa-0.5.9'
-make[2]: Entering directory `/build/buildd-bwa_0.5.9-1-armel-ykOV5b/bwa-0.5.9'
+dh build
+ dh_testdir
+ dh_auto_configure
+ dh_auto_build
+make[1]: Entering directory `/build/buildd-bwa_0.5.9-2-armel-i0oXM5/bwa-0.5.9'
+make[2]: Entering directory `/build/buildd-bwa_0.5.9-2-armel-i0oXM5/bwa-0.5.9'
make[2]: Nothing to be done for `lib'.
-make[2]: Leaving directory `/build/buildd-bwa_0.5.9-1-armel-ykOV5b/bwa-0.5.9'
-make[2]: Entering directory `/build/buildd-bwa_0.5.9-1-armel-ykOV5b/bwa-0.5.9/bwt_gen'
-gcc -c -g -O2 -g -Wall -O2 -DHAVE_PTHREAD bwt_gen.c -o bwt_gen.o
-gcc -c -g -O2 -g -Wall -O2 -DHAVE_PTHREAD QSufSort.c -o QSufSort.o
+make[2]: Leaving directory `/build/buildd-bwa_0.5.9-2-armel-i0oXM5/bwa-0.5.9'
+make[2]: Entering directory `/build/buildd-bwa_0.5.9-2-armel-i0oXM5/bwa-0.5.9/bwt_gen'
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD bwt_gen.c -o bwt_gen.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD QSufSort.c -o QSufSort.o
ar -cru libbwtgen.a bwt_gen.o QSufSort.o
-make[2]: Leaving directory `/build/buildd-bwa_0.5.9-1-armel-ykOV5b/bwa-0.5.9/bwt_gen'
-gcc -c -g -O2 -g -Wall -O2 -DHAVE_PTHREAD utils.c -o utils.o
-gcc -c -g -O2 -g -Wall -O2 -DHAVE_PTHREAD bwt.c -o bwt.o
-gcc -c -g -O2 -g -Wall -O2 -DHAVE_PTHREAD bwtio.c -o bwtio.o
-gcc -c -g -O2 -g -Wall -O2 -DHAVE_PTHREAD bwtaln.c -o bwtaln.o
-gcc -c -g -O2 -g -Wall -O2 -DHAVE_PTHREAD bwtgap.c -o bwtgap.o
-gcc -c -g -O2 -g -Wall -O2 -DHAVE_PTHREAD is.c -o is.o
-gcc -c -g -O2 -g -Wall -O2 -DHAVE_PTHREAD bntseq.c -o bntseq.o
-gcc -c -g -O2 -g -Wall -O2 -DHAVE_PTHREAD bwtmisc.c -o bwtmisc.o
-gcc -c -g -O2 -g -Wall -O2 -DHAVE_PTHREAD bwtindex.c -o bwtindex.o
-gcc -c -g -O2 -g -Wall -O2 -DHAVE_PTHREAD stdaln.c -o stdaln.o
-gcc -c -g -O2 -g -Wall -O2 -DHAVE_PTHREAD simple_dp.c -o simple_dp.o
-gcc -c -g -O2 -g -Wall -O2 -DHAVE_PTHREAD bwaseqio.c -o bwaseqio.o
-gcc -c -g -O2 -g -Wall -O2 -DHAVE_PTHREAD bwase.c -o bwase.o
-gcc -c -g -O2 -g -Wall -O2 -DHAVE_PTHREAD bwape.c -o bwape.o
-gcc -c -g -O2 -g -Wall -O2 -DHAVE_PTHREAD kstring.c -o kstring.o
-gcc -c -g -O2 -g -Wall -O2 -DHAVE_PTHREAD cs2nt.c -o cs2nt.o
-gcc -c -g -O2 -g -Wall -O2 -DHAVE_PTHREAD bwtsw2_core.c -o bwtsw2_core.o
-gcc -c -g -O2 -g -Wall -O2 -DHAVE_PTHREAD bwtsw2_main.c -o bwtsw2_main.o
-gcc -c -g -O2 -g -Wall -O2 -DHAVE_PTHREAD bwtsw2_aux.c -o bwtsw2_aux.o
-gcc -c -g -O2 -g -Wall -O2 -DHAVE_PTHREAD bwt_lite.c -o bwt_lite.o
-gcc -c -g -O2 -g -Wall -O2 -DHAVE_PTHREAD bwtsw2_chain.c -o bwtsw2_chain.o
-gcc -c -g -O2 -g -Wall -O2 -DHAVE_PTHREAD bamlite.c -o bamlite.o
-gcc -c -g -O2 -g -Wall -O2 -DHAVE_PTHREAD main.c -o main.o
-gcc -g -O2 -g -Wall -O2 -DHAVE_PTHREAD utils.o bwt.o bwtio.o bwtaln.o bwtgap.o is.o bntseq.o bwtmisc.o bwtindex.o stdaln.o simple_dp.o bwaseqio.o bwase.o bwape.o kstring.o cs2nt.o bwtsw2_core.o bwtsw2_main.o bwtsw2_aux.o bwt_lite.o bwtsw2_chain.o bamlite.o main.o -o bwa -lm -lz -lpthread -Lbwt_gen -lbwtgen
-make[1]: Leaving directory `/build/buildd-bwa_0.5.9-1-armel-ykOV5b/bwa-0.5.9'
-touch debian/stamp-makefile-build
-DEB_MAKE_CHECK_TARGET unset, not running checks
+make[2]: Leaving directory `/build/buildd-bwa_0.5.9-2-armel-i0oXM5/bwa-0.5.9/bwt_gen'
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD utils.c -o utils.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD bwt.c -o bwt.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD bwtio.c -o bwtio.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD bwtaln.c -o bwtaln.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD bwtgap.c -o bwtgap.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD is.c -o is.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD bntseq.c -o bntseq.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD bwtmisc.c -o bwtmisc.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD bwtindex.c -o bwtindex.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD stdaln.c -o stdaln.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD simple_dp.c -o simple_dp.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD bwaseqio.c -o bwaseqio.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD bwase.c -o bwase.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD bwape.c -o bwape.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD kstring.c -o kstring.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD cs2nt.c -o cs2nt.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD bwtsw2_core.c -o bwtsw2_core.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD bwtsw2_main.c -o bwtsw2_main.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD bwtsw2_aux.c -o bwtsw2_aux.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD bwt_lite.c -o bwt_lite.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD bwtsw2_chain.c -o bwtsw2_chain.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD bamlite.c -o bamlite.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD main.c -o main.o
+gcc -g -Wall -O2 -DHAVE_PTHREAD utils.o bwt.o bwtio.o bwtaln.o bwtgap.o is.o bntseq.o bwtmisc.o bwtindex.o stdaln.o simple_dp.o bwaseqio.o bwase.o bwape.o kstring.o cs2nt.o bwtsw2_core.o bwtsw2_main.o bwtsw2_aux.o bwt_lite.o bwtsw2_chain.o bamlite.o main.o -o bwa -lm -lz -lpthread -Lbwt_gen -lbwtgen
+make[1]: Leaving directory `/build/buildd-bwa_0.5.9-2-armel-i0oXM5/bwa-0.5.9'
+ dh_auto_test
/usr/bin/fakeroot debian/rules binary-arch
-test -x debian/rules
-dh_testroot
-dh_prep
-dh_installdirs -A
-mkdir -p "."
-DEB_MAKE_CHECK_TARGET unset, not running checks
-DEB_MAKE_INSTALL_TARGET unset, skipping default makefile.mk common-install target
-Adding cdbs dependencies to debian/bwa.substvars
-dh_installdirs -pbwa
-dh_installdocs -pbwa ./README ./NEWS
-dh_installexamples -pbwa
-dh_installman -pbwa
-dh_installinfo -pbwa
-dh_installmenu -pbwa
-dh_installcron -pbwa
-dh_installinit -pbwa
-dh_installdebconf -pbwa
-dh_installemacsen -pbwa
-dh_installcatalogs -pbwa
-dh_installpam -pbwa
-dh_installlogrotate -pbwa
-dh_installlogcheck -pbwa
-dh_installchangelogs -pbwa ./ChangeLog
-dh_installudev -pbwa
-dh_lintian -pbwa
-dh_install -pbwa
-dh_link -pbwa
-dh_installmime -pbwa
-dh_strip -pbwa
-dh_compress -pbwa
-dh_fixperms -pbwa
-dh_makeshlibs -pbwa
-dh_installdeb -pbwa
-dh_perl -pbwa
-dh_shlibdeps -pbwa
-dh_gencontrol -pbwa
+dh binary-arch
+ dh_testroot -a
+ dh_prep -a
+ dh_installdirs -a
+ dh_auto_install -a
+ dh_install -a
+ dh_installdocs -a
+ dh_installchangelogs -a
+ dh_installexamples -a
+ dh_installman -a
+ dh_installcatalogs -a
+ dh_installcron -a
+ dh_installdebconf -a
+ dh_installemacsen -a
+ dh_installifupdown -a
+ dh_installinfo -a
+ dh_installinit -a
+ dh_installmenu -a
+ dh_installmime -a
+ dh_installmodules -a
+ dh_installlogcheck -a
+ dh_installlogrotate -a
+ dh_installpam -a
+ dh_installppp -a
+ dh_installudev -a
+ dh_installwm -a
+ dh_installxfonts -a
+ dh_bugfiles -a
+ dh_lintian -a
+ dh_gconf -a
+ dh_icons -a
+ dh_perl -a
+ dh_usrlocal -a
+ dh_link -a
+ dh_compress -a
+ dh_fixperms -a
+ dh_strip -a
+ dh_makeshlibs -a
+ dh_shlibdeps -a
+ dh_installdeb -a
+ dh_gencontrol -a
dpkg-gencontrol: warning: package bwa: unused substitution variable ${perl:Depends}
-dh_md5sums -pbwa
-dh_builddeb -pbwa
-dpkg-deb: building package `bwa' in `../bwa_0.5.9-1_armel.deb'.
- dpkg-genchanges -B -marmel Build Daemon (ancina) <buildd_armel-ancina at buildd.debian.org> >../bwa_0.5.9-1_armel.changes
+ dh_md5sums -a
+ dh_builddeb -a
+dpkg-deb: building package `bwa' in `../bwa_0.5.9-2_armel.deb'.
+ dpkg-genchanges -B -marmel Build Daemon (ancina) <buildd_armel-ancina at buildd.debian.org> >../bwa_0.5.9-2_armel.changes
dpkg-genchanges: arch-specific upload - not including arch-independent packages
dpkg-genchanges: binary-only upload - not including any source code
dpkg-source --after-build bwa-0.5.9
dpkg-buildpackage: binary only upload (no source included)
────────────────────────────────────────────────────────────────────────────────
-Build finished at 20110208-1122
+Build finished at 20110312-1642
-bwa_0.5.9-1_armel.changes:
+bwa_0.5.9-2_armel.changes:
Format: 1.8
-Date: Tue, 08 Feb 2011 16:11:12 +0900
+Date: Fri, 11 Mar 2011 22:49:07 +0100
Source: bwa
Binary: bwa
Architecture: armel
-Version: 0.5.9-1
+Version: 0.5.9-2
Distribution: sid
Urgency: low
Maintainer: armel Build Daemon (ancina) <buildd_armel-ancina at buildd.debian.org>
-Changed-By: Charles Plessy <plessy at debian.org>
+Changed-By: Andreas Tille <tille at debian.org>
Description:
bwa - Burrows-Wheeler Aligner
Changes:
- bwa (0.5.9-1) unstable; urgency=low
+ bwa (0.5.9-2) unstable; urgency=low
.
- * New usptream release
- - Upstream moved to GitHub (debian/upstream-metadata.yaml).
- - Checked copyright; one file was removed (debian/copyright).
- * Migrated the Debian source package to Git (debian/control).
- * Use Debhelper 8 (debian/control, debian/compat).
+ * Watchfile should not regard rc releases.
+ * Drop cdbs in favour of dh
Checksums-Sha1:
- 0bcc3678f4793d1b4b1618ab646fd1b89f3ad236 140592 bwa_0.5.9-1_armel.deb
+ 3191c3e8c275550bf53f24c50c306d7612e93ec3 142398 bwa_0.5.9-2_armel.deb
Checksums-Sha256:
- 8749b51249b9ac15e0a250be501c8106b8b60e30c2c2b8897873df9893c1efff 140592 bwa_0.5.9-1_armel.deb
+ 231417aee63684dabc94b098cea210978bf1589f713ffdeacbf855ff0af402e7 142398 bwa_0.5.9-2_armel.deb
Files:
- 2974d95b03ff4f1fe633ed6f7cb07da7 140592 science optional bwa_0.5.9-1_armel.deb
+ b59384fd8cf3f12829a20a17beeb9b5c 142398 science optional bwa_0.5.9-2_armel.deb
┌──────────────────────────────────────────────────────────────────────────────┐
│ Package contents │
└──────────────────────────────────────────────────────────────────────────────┘
-bwa_0.5.9-1_armel.deb
+bwa_0.5.9-2_armel.deb
─────────────────────
new debian package, version 2.0.
- size 140592 bytes: control archive= 975 bytes.
+ size 142398 bytes: control archive= 980 bytes.
774 bytes, 17 lines control
615 bytes, 10 lines md5sums
Package: bwa
- Version: 0.5.9-1
+ Version: 0.5.9-2
Architecture: armel
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
Installed-Size: 316
@@ -372,21 +374,21 @@ bwa_0.5.9-1_armel.deb
to around 100 kbp. Both algorithms do gapped alignment. They are usually more
accurate and faster on queries with low error rates.
-drwxr-xr-x root/root 0 2011-02-08 11:21 ./
-drwxr-xr-x root/root 0 2011-02-08 11:21 ./usr/
-drwxr-xr-x root/root 0 2011-02-08 11:21 ./usr/bin/
--rwxr-xr-x root/root 198360 2011-02-08 11:21 ./usr/bin/bwa
-drwxr-xr-x root/root 0 2011-02-08 11:21 ./usr/share/
-drwxr-xr-x root/root 0 2011-02-08 11:21 ./usr/share/man/
-drwxr-xr-x root/root 0 2011-02-08 11:21 ./usr/share/man/man1/
--rw-r--r-- root/root 7554 2011-02-08 11:21 ./usr/share/man/man1/bwa.1.gz
-drwxr-xr-x root/root 0 2011-02-08 11:21 ./usr/share/bwa/
+drwxr-xr-x root/root 0 2011-03-12 16:42 ./
+drwxr-xr-x root/root 0 2011-03-12 16:42 ./usr/
+drwxr-xr-x root/root 0 2011-03-12 16:42 ./usr/bin/
+-rwxr-xr-x root/root 198312 2011-03-12 16:42 ./usr/bin/bwa
+drwxr-xr-x root/root 0 2011-03-12 16:42 ./usr/share/
+drwxr-xr-x root/root 0 2011-03-12 16:42 ./usr/share/man/
+drwxr-xr-x root/root 0 2011-03-12 16:42 ./usr/share/man/man1/
+-rw-r--r-- root/root 7554 2011-03-12 16:42 ./usr/share/man/man1/bwa.1.gz
+drwxr-xr-x root/root 0 2011-03-12 16:42 ./usr/share/bwa/
-rwxr-xr-x root/root 616 2011-01-25 00:00 ./usr/share/bwa/qualfa2fq.pl
-rwxr-xr-x root/root 3176 2011-01-25 00:00 ./usr/share/bwa/solid2fastq.pl
-drwxr-xr-x root/root 0 2011-02-08 11:21 ./usr/share/doc/
-drwxr-xr-x root/root 0 2011-02-08 11:21 ./usr/share/doc/bwa/
+drwxr-xr-x root/root 0 2011-03-12 16:42 ./usr/share/doc/
+drwxr-xr-x root/root 0 2011-03-12 16:42 ./usr/share/doc/bwa/
-rw-r--r-- root/root 5857 2011-01-25 00:00 ./usr/share/doc/bwa/NEWS.gz
--rw-r--r-- root/root 881 2011-02-08 07:11 ./usr/share/doc/bwa/changelog.Debian.gz
+-rw-r--r-- root/root 957 2011-03-11 21:54 ./usr/share/doc/bwa/changelog.Debian.gz
-rw-r--r-- root/root 17912 2011-01-25 00:00 ./usr/share/doc/bwa/changelog.gz
-rw-r--r-- root/root 634 2011-01-25 00:00 ./usr/share/doc/bwa/README
-rw-r--r-- root/root 2676 2011-02-08 07:09 ./usr/share/doc/bwa/copyright
@@ -399,33 +401,34 @@ drwxr-xr-x root/root 0 2011-02-08 11:21 ./usr/share/doc/bwa/
Built successfully
────────────────────────────────────────────────────────────────────────────────
-Purging /var/lib/schroot/mount/sid-armel-sbuild-c0cc5792-ce4c-46e8-99a7-f7302d614395/build/buildd-bwa_0.5.9-1-armel-ykOV5b
-(Reading database ... 11983 files and directories currently installed.)
+Purging /var/lib/schroot/mount/sid-armel-sbuild-759e875c-3a5c-4544-8c5b-9dbf30d57b9b/build/buildd-bwa_0.5.9-2-armel-i0oXM5
+(Reading database ... 12098 files and directories currently installed.)
Removing zlib1g-dev ...
-Removing cdbs ...
Removing debhelper ...
Removing po-debconf ...
+Removing man-db ...
+Purging configuration files for man-db ...
Removing intltool-debian ...
+Removing groff-base ...
+Purging configuration files for groff-base ...
Removing gettext ...
Removing file ...
Removing html2text ...
Purging configuration files for html2text ...
Removing gettext-base ...
-Removing man-db ...
-Purging configuration files for man-db ...
Removing libunistring0 ...
Purging configuration files for libunistring0 ...
-Removing groff-base ...
-Purging configuration files for groff-base ...
Removing libcroco3 ...
Purging configuration files for libcroco3 ...
Removing libmagic1 ...
Purging configuration files for libmagic1 ...
+Removing libpipeline1 ...
+Purging configuration files for libpipeline1 ...
Removing libxml2 ...
Purging configuration files for libxml2 ...
Removing libglib2.0-0 ...
Purging configuration files for libglib2.0-0 ...
────────────────────────────────────────────────────────────────────────────────
-Finished at 20110208-1122
-Build needed 00:02:30, 2464k disc space
+Finished at 20110312-1642
+Build needed 00:02:55, 2620k disc space
diff --git a/hppa.log b/hppa.log
index 879719f..4b7bf35 100644
--- a/hppa.log
+++ b/hppa.log
@@ -1,101 +1,65 @@
-From buildd at penalosa.debian.org Tue Feb 08 10:04:16 2011
+From buildd at penalosa.debian.org Sun Mar 13 04:05:32 2011
Return-path: <buildd at penalosa.debian.org>
-Received: from kokkonen.debian.org ([2001:41b8:202:deb:216:35ff:fec4:6340])
+Received: from merikanto.debian.org ([2001:858:2:2:216:35ff:fec4:a49a])
from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
- CN=kokkonen.debian.org,
- EMAIL=hostmaster at kokkonen.debian.org (verified)
+ CN=merikanto.debian.org,
+ EMAIL=hostmaster at merikanto.debian.org (verified)
by grieg.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
(Exim 4.69) (envelope-from <buildd at penalosa.debian.org>)
- id 1PmkQh-0000g0-RU
- for logs at buildd.debian.org; Tue, 08 Feb 2011 10:04:16 +0000
+ id 1PycYZ-0002EW-BO
+ for logs at buildd.debian.org; Sun, 13 Mar 2011 04:05:30 +0000
Received: from penalosa.debian.org ([192.25.206.68])
from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
CN=penalosa.debian.org,
EMAIL=hostmaster at penalosa.debian.org (verified)
- by kokkonen.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
+ by merikanto.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
(Exim 4.69) (envelope-from <buildd at penalosa.debian.org>)
- id 1PmkQg-0002Px-8M; Tue, 08 Feb 2011 10:04:14 +0000
+ id 1PycYV-0003ps-Sw; Sun, 13 Mar 2011 04:05:24 +0000
Received: from buildd by penalosa.debian.org with local (Exim 4.69)
(envelope-from <buildd at penalosa.debian.org>)
- id 1PmkQc-0002OX-Lz; Tue, 08 Feb 2011 10:04:10 +0000
+ id 1PycYT-000255-0M; Sun, 13 Mar 2011 04:05:21 +0000
From: buildd on penalosa <buildd at penalosa.debian.org>
To: dannf+buildd at dannf.org,logs at buildd.debian.org
-Subject: Log for successful build of bwa_0.5.9-1 on hppa (dist=sid)
+Subject: Log for successful build of bwa_0.5.9-2 on hppa (dist=sid)
Content-Type: text/plain; charset=UTF-8
Content-Transfer-Encoding: 8bit
-Message-Id: <E1PmkQc-0002OX-Lz at penalosa.debian.org>
-Date: Tue, 08 Feb 2011 10:04:10 +0000
+Message-Id: <E1PycYT-000255-0M at penalosa.debian.org>
+Date: Sun, 13 Mar 2011 04:05:21 +0000
Delivered-To: logs at buildd.debian.org
-sbuild (Debian sbuild) 0.60.0 (23 Feb 2010) on penalosa.debian.org
+sbuild (Debian sbuild) 0.60.5 (14 Nov 2010) on penalosa.debian.org
╔══════════════════════════════════════════════════════════════════════════════╗
-║ bwa 0.5.9-1 (hppa) 08 Feb 2011 10:00 ║
+║ bwa 0.5.9-2 (hppa) 13 Mar 2011 04:03 ║
╚══════════════════════════════════════════════════════════════════════════════╝
Package: bwa
-Version: 0.5.9-1
+Version: 0.5.9-2
Architecture: hppa
-Chroot Build Dir: /var/lib/schroot/mount/sid-hppa-sbuild-adf641b4-c3b2-44bf-801b-b6f703ce29e4/build/buildd-bwa_0.5.9-1-hppa-BksjZx
-Start Time: 20110208-1000
-Get:1 http://spohr.debian.org sid Release.gpg [835 B]
-Ign http://spohr.debian.org/debian/ sid/contrib Translation-en
-Ign http://spohr.debian.org/debian/ sid/main Translation-en
-Get:2 http://spohr.debian.org sid Release [104 kB]
-Get:3 http://incoming.debian.org sid Release.gpg [835 B]
-Ign http://incoming.debian.org/debian/ sid/contrib Translation-en
-Ign http://incoming.debian.org/debian/ sid/main Translation-en
-Get:4 http://incoming.debian.org Release.gpg [835 B]
-Ign http://incoming.debian.org/buildd-unstable/ Translation-en
-Get:5 http://incoming.debian.org sid Release [104 kB]
-Get:6 http://spohr.debian.org sid/main Sources/DiffIndex [2038 B]
-Get:7 http://incoming.debian.org Release [1604 B]
-Get:8 http://incoming.debian.org sid/main Sources/DiffIndex [2038 B]
-Get:9 http://spohr.debian.org sid/contrib Sources/DiffIndex [2023 B]
-Get:10 http://spohr.debian.org sid/main hppa Packages/DiffIndex [2038 B]
-Get:11 http://spohr.debian.org sid/contrib hppa Packages/DiffIndex [2023 B]
-Get:12 http://spohr.debian.org sid/main 2011-02-08-0211.24.pdiff [13.5 kB]
-Get:13 http://spohr.debian.org sid/contrib 2011-02-08-0211.24.pdiff [266 B]
-Get:14 http://spohr.debian.org sid/main hppa 2011-02-08-0211.24.pdiff [23.3 kB]
-Get:15 http://incoming.debian.org sid/contrib Sources/DiffIndex [2023 B]
-Get:16 http://incoming.debian.org sid/main hppa Packages/DiffIndex [2038 B]
-Get:17 http://spohr.debian.org sid/main 2011-02-08-0211.24.pdiff [13.5 kB]
-Get:18 http://spohr.debian.org sid/contrib hppa 2011-02-08-0211.24.pdiff [300 B]
-Get:19 http://incoming.debian.org sid/contrib hppa Packages/DiffIndex [2023 B]
-Get:20 http://incoming.debian.org Sources [43.7 kB]
-Get:21 http://incoming.debian.org Packages [683 kB]
-Get:22 http://incoming.debian.org sid/main 2011-02-08-0211.24.pdiff [13.5 kB]
-Get:23 http://incoming.debian.org sid/contrib 2011-02-08-0211.24.pdiff [266 B]
-Get:24 http://incoming.debian.org sid/main hppa 2011-02-08-0211.24.pdiff [23.3 kB]
-Get:25 http://spohr.debian.org sid/main 2011-02-08-0211.24.pdiff [13.5 kB]
-Get:26 http://spohr.debian.org sid/contrib 2011-02-08-0211.24.pdiff [266 B]
-Get:27 http://spohr.debian.org sid/main hppa 2011-02-08-0211.24.pdiff [23.3 kB]
-Get:28 http://spohr.debian.org sid/contrib hppa 2011-02-08-0211.24.pdiff [300 B]
-Get:29 http://incoming.debian.org sid/main 2011-02-08-0211.24.pdiff [13.5 kB]
-Get:30 http://incoming.debian.org sid/contrib 2011-02-08-0211.24.pdiff [266 B]
-Get:31 http://incoming.debian.org sid/contrib hppa 2011-02-08-0211.24.pdiff [300 B]
-Get:32 http://incoming.debian.org sid/main hppa 2011-02-08-0211.24.pdiff [23.3 kB]
-Get:33 http://incoming.debian.org sid/contrib hppa 2011-02-08-0211.24.pdiff [300 B]
-Get:34 http://spohr.debian.org sid/contrib 2011-02-08-0211.24.pdiff [266 B]
-Get:35 http://spohr.debian.org sid/main 2011-02-08-0812.10.pdiff [3472 B]
-Get:36 http://spohr.debian.org sid/main 2011-02-08-0812.10.pdiff [3472 B]
-Get:37 http://spohr.debian.org sid/main hppa 2011-02-08-0211.24.pdiff [23.3 kB]
-Get:38 http://spohr.debian.org sid/contrib hppa 2011-02-08-0211.24.pdiff [300 B]
-Get:39 http://incoming.debian.org sid/main 2011-02-08-0211.24.pdiff [13.5 kB]
-Get:40 http://spohr.debian.org sid/main hppa 2011-02-08-0812.10.pdiff [19.8 kB]
-Get:41 http://spohr.debian.org sid/main hppa 2011-02-08-0812.10.pdiff [19.8 kB]
-Get:42 http://incoming.debian.org sid/contrib 2011-02-08-0211.24.pdiff [266 B]
-Get:43 http://incoming.debian.org sid/main hppa 2011-02-08-0211.24.pdiff [23.3 kB]
-Get:44 http://incoming.debian.org sid/main 2011-02-08-0812.10.pdiff [3472 B]
-Get:45 http://incoming.debian.org sid/main 2011-02-08-0812.10.pdiff [3472 B]
-Get:46 http://incoming.debian.org sid/contrib hppa 2011-02-08-0211.24.pdiff [300 B]
-Get:47 http://spohr.debian.org sid/main 2011-02-08-0812.10.pdiff [3472 B]
-Get:48 http://incoming.debian.org sid/main hppa 2011-02-08-0812.10.pdiff [19.8 kB]
-Get:49 http://incoming.debian.org sid/main hppa 2011-02-08-0812.10.pdiff [19.8 kB]
-Get:50 http://spohr.debian.org sid/main hppa 2011-02-08-0812.10.pdiff [19.8 kB]
-Get:51 http://incoming.debian.org sid/main 2011-02-08-0812.10.pdiff [3472 B]
-Get:52 http://incoming.debian.org sid/main hppa 2011-02-08-0812.10.pdiff [19.8 kB]
-Fetched 1076 kB in 33s (32.3 kB/s)
+Chroot Build Dir: /var/lib/schroot/mount/sid-hppa-sbuild-ae24f9fd-6a14-441e-9f33-0661c2035409/build/buildd-bwa_0.5.9-2-hppa-fpMxJF
+Start Time: 20110313-0403
+Hit http://spohr.debian.org sid InRelease
+Hit http://spohr.debian.org sid/main Sources/DiffIndex
+Hit http://incoming.debian.org sid InRelease
+Ign http://incoming.debian.org InRelease
+Hit http://spohr.debian.org sid/contrib Sources/DiffIndex
+Hit http://spohr.debian.org sid/main hppa Packages/DiffIndex
+Hit http://spohr.debian.org sid/contrib hppa Packages/DiffIndex
+Ign http://spohr.debian.org sid/contrib TranslationIndex
+Hit http://spohr.debian.org sid/main TranslationIndex
+Hit http://incoming.debian.org Release.gpg
+Hit http://incoming.debian.org sid/main Sources/DiffIndex
+Hit http://incoming.debian.org sid/contrib Sources/DiffIndex
+Hit http://incoming.debian.org sid/main hppa Packages/DiffIndex
+Hit http://incoming.debian.org sid/contrib hppa Packages/DiffIndex
+Ign http://incoming.debian.org sid/contrib TranslationIndex
+Hit http://incoming.debian.org sid/main TranslationIndex
+Ign http://spohr.debian.org sid/contrib Translation-en
+Hit http://incoming.debian.org Release
+Hit http://incoming.debian.org Sources
+Hit http://incoming.debian.org Packages
+Ign http://incoming.debian.org sid/contrib Translation-en
+Ign http://incoming.debian.org Translation-en
Reading package lists...
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -117,103 +81,32 @@ Reading state information...
NOTICE: 'bwa' packaging is maintained in the 'Git' version control system at:
git://git.debian.org/git/debian-med/bwa.git
Need to get 119 kB of source archives.
-Get:1 http://incoming.debian.org/buildd-unstable/ bwa 0.5.9-1 (dsc) [1894 B]
-Get:2 http://incoming.debian.org/buildd-unstable/ bwa 0.5.9-1 (tar) [114 kB]
-Get:3 http://incoming.debian.org/buildd-unstable/ bwa 0.5.9-1 (diff) [3651 B]
-Fetched 119 kB in 7s (15.6 kB/s)
+Get:1 http://spohr.debian.org/debian/ sid/main bwa 0.5.9-2 (dsc) [1245 B]
+Get:2 http://spohr.debian.org/debian/ sid/main bwa 0.5.9-2 (tar) [114 kB]
+Get:3 http://spohr.debian.org/debian/ sid/main bwa 0.5.9-2 (diff) [3828 B]
+Fetched 119 kB in 0s (702 kB/s)
Download complete and in download only mode
Check arch
──────────
** Using build dependencies supplied by package:
-Build-Depends: cdbs, debhelper (>= 8), zlib1g-dev
+Build-Depends: debhelper (>= 8), zlib1g-dev
┌──────────────────────────────────────────────────────────────────────────────┐
│ Install build dependencies (internal resolver) │
└──────────────────────────────────────────────────────────────────────────────┘
Checking for already installed source dependencies...
-cdbs: missing
-debhelper: missing
-Using default version 8.1.0
-zlib1g-dev: missing
+debhelper: already installed (8.1.2 >= 8 is satisfied)
+zlib1g-dev: already installed (1:1.2.3.4.dfsg-3)
Checking for source dependency conflicts...
-Installing positive dependencies: cdbs debhelper zlib1g-dev
-Reading package lists...
-Building dependency tree...
-Reading state information...
-The following extra packages will be installed:
- gettext gettext-base groff-base html2text intltool-debian libcroco3
- libglib2.0-0 libpcre3 libunistring0 libxml2 man-db po-debconf
-Suggested packages:
- devscripts doc-base dh-make gettext-doc groff less www-browser
- libmail-box-perl
-Recommended packages:
- autotools-dev curl wget lynx-cur autopoint libglib2.0-data shared-mime-info
- xml-core libmail-sendmail-perl
-The following NEW packages will be installed:
- cdbs debhelper gettext gettext-base groff-base html2text intltool-debian
- libcroco3 libglib2.0-0 libpcre3 libunistring0 libxml2 man-db po-debconf
- zlib1g-dev
-0 upgraded, 15 newly installed, 0 to remove and 27 not upgraded.
-Need to get 263 kB/10.0 MB of archives.
-After this operation, 26.3 MB of additional disk space will be used.
-Get:1 http://spohr.debian.org/debian/ sid/main libpcre3 hppa 8.12-1 [263 kB]
-debconf: delaying package configuration, since apt-utils is not installed
-Fetched 263 kB in 5s (43.9 kB/s)
-Selecting previously deselected package groff-base.
-(Reading database ... 11565 files and directories currently installed.)
-Unpacking groff-base (from .../groff-base_1.20.1-10_hppa.deb) ...
-Selecting previously deselected package man-db.
-Unpacking man-db (from .../man-db_2.5.7-8_hppa.deb) ...
-Selecting previously deselected package gettext-base.
-Unpacking gettext-base (from .../gettext-base_0.18.1.1-3_hppa.deb) ...
-Selecting previously deselected package libpcre3.
-Unpacking libpcre3 (from .../libpcre3_8.12-1_hppa.deb) ...
-Selecting previously deselected package libxml2.
-Unpacking libxml2 (from .../libxml2_2.7.8.dfsg-2_hppa.deb) ...
-Selecting previously deselected package html2text.
-Unpacking html2text (from .../html2text_1.3.2a-15_hppa.deb) ...
-Selecting previously deselected package libglib2.0-0.
-Unpacking libglib2.0-0 (from .../libglib2.0-0_2.24.2-1_hppa.deb) ...
-Selecting previously deselected package libcroco3.
-Unpacking libcroco3 (from .../libcroco3_0.6.2-1_hppa.deb) ...
-Selecting previously deselected package libunistring0.
-Unpacking libunistring0 (from .../libunistring0_0.9.3-3_hppa.deb) ...
-Selecting previously deselected package gettext.
-Unpacking gettext (from .../gettext_0.18.1.1-3_hppa.deb) ...
-Selecting previously deselected package intltool-debian.
-Unpacking intltool-debian (from .../intltool-debian_0.35.0+20060710.1_all.deb) ...
-Selecting previously deselected package po-debconf.
-Unpacking po-debconf (from .../po-debconf_1.0.16+nmu1_all.deb) ...
-Selecting previously deselected package debhelper.
-Unpacking debhelper (from .../debhelper_8.1.0_all.deb) ...
-Selecting previously deselected package cdbs.
-Unpacking cdbs (from .../archives/cdbs_0.4.89_all.deb) ...
-Selecting previously deselected package zlib1g-dev.
-Unpacking zlib1g-dev (from .../zlib1g-dev_1%3a1.2.3.4.dfsg-3_hppa.deb) ...
-Setting up groff-base (1.20.1-10) ...
-Setting up man-db (2.5.7-8) ...
-Building database of manual pages ...
-Setting up gettext-base (0.18.1.1-3) ...
-Setting up libpcre3 (8.12-1) ...
-Setting up libxml2 (2.7.8.dfsg-2) ...
-Setting up html2text (1.3.2a-15) ...
-Setting up libglib2.0-0 (2.24.2-1) ...
-Setting up libcroco3 (0.6.2-1) ...
-Setting up libunistring0 (0.9.3-3) ...
-Setting up gettext (0.18.1.1-3) ...
-Setting up intltool-debian (0.35.0+20060710.1) ...
-Setting up po-debconf (1.0.16+nmu1) ...
-Setting up debhelper (8.1.0) ...
-Setting up cdbs (0.4.89) ...
-Setting up zlib1g-dev (1:1.2.3.4.dfsg-3) ...
+Installing positive dependencies:
Removing negative dependencies:
Checking correctness of source dependencies...
Kernel: Linux 2.6.32-5-parisc64 hppa (parisc64)
-Toolchain package versions: libc6-dev_2.11.2-10 dpkg-dev_1.15.8.6 linux-libc-dev_2.6.32-30 gcc-4.4_4.4.5-10 g++-4.4_4.4.5-10 binutils_2.20.1-16 libstdc++6-4.4-dev_4.4.5-10 libstdc++6_4.4.5-10
-Package versions: apt_0.8.10.3 base-files_5.10 base-passwd_3.5.22 bash_4.1-3 binutils_2.20.1-16 bsdmainutils_8.0.17 bsdutils_1:2.17.2-3.3 build-essential_11.5 bzip2_1.0.5-6 cdbs_0.4.89 coreutils_8.5-1 cpio_2.11-5 cpp_4:4.4.5-2 cpp-4.4_4.4.5-10 dash_0.5.5.1-7.3 debconf_1.5.37 debconf-i18n_1.5.37 debfoster_2.7-1.1 debhelper_8.1.0 debian-archive-keyring_2010.08.28 debianutils_3.4.2 diffutils_1:3.0-1 dmsetup_2:1.02.48-4 dpkg_1.15.8.6 dpkg-dev_1.15.8.6 e2fslibs_1.41.12-2 e2fsprogs_1.41.12-2 fakeroot_1.14.5-1 file_5.04-5 findutils_4.4.2-1+b1 g++_4:4.4.5-2 g++-4.4_4.4.5-10 gcc_4:4.4.5-2 gcc-4.2-base_4.2.4-6 gcc-4.3-base_4.3.5-4 gcc-4.4_4.4.5-10 gcc-4.4-base_4.4.5-10 gettext_0.18.1.1-3 gettext-base_0.18.1.1-3 gnupg_1.4.10-4 gpgv_1.4.10-4 grep_2.6.3-3 groff-base_1.20.1-10 gzip_1.3.12-9 hostname_3.05 html2text_1.3.2a-15 initscripts_2.88dsf-13 insserv_1.14.0-2 intltool-debian_0.35.0+20060710.1 libacl1_2.2.49-4 libattr1_1:2.4.44-2 libblkid1_2.17.2-7 libbz2-1.0_1.0.5-6 libc-bin_2.11.2-10 libc-dev-bin_2.11.2-10 libc6_2.11.2-10 libc6-dev_2.11.2-10 libcomerr2_1.41.12-2 libcroco3_0.6.2-1 libdb4.7_4.7.25-10 libdb4.8_4.8.30-4 libdevmapper1.02.1_2:1.02.48-4 libdpkg-perl_1.15.8.6 libextutils-parsexs-perl_2.220600-1 libgc1c2_1:6.8-1.2 libgcc4_4.4.5-10 libgdbm3_1.8.3-9 libglib2.0-0_2.24.2-1 libgmp3c2_2:4.3.2+dfsg-1 libgomp1_4.4.5-10 liblocale-gettext-perl_1.05-6 liblzma2_5.0.0-2 libmagic1_5.04-5 libmodule-build-perl_0.360700-1 libmpfr1ldbl_2.4.2-3 libmpfr4_3.0.0-2 libncurses5_5.7+20100313-5 libncurses5-dev_5.7+20100313-5 libncursesw5_5.7+20100313-5 libpam-modules_1.1.1-6.1 libpam-runtime_1.1.1-6.1 libpam0g_1.1.1-6.1 libpcre3_8.12-1 libpng12-0_1.2.44-1 libreadline5_5.2-7 libreadline6_6.1-3 libselinux1_2.0.96-1 libsepol1_2.0.42-1 libslang2_2.2.2-4+b1 libss2_1.41.12-2 libstdc++6_4.4.5-10 libstdc++6-4.4-dev_4.4.5-10 libtext-charwidth-perl_0.04-6 libtext-iconv-perl_1.7-2 libtext-wrapi18n-perl_0.06-7 libtimedate-perl_1.2000-1 libudev0_164-4 libunistring0_0.9.3-3 libusb-0.1-4_2:0.1.12-16 libuuid1_2.17.2-9 libxml2_2.7.8.dfsg-2 libyaml-perl_0.71-1 linux-libc-dev_2.6.32-30 login_1:4.1.4.2+svn3283-2 lsb-base_3.2-26 lzma_4.43-14 make_3.81-8 man-db_2.5.7-8 mawk_1.3.3-15 mount_2.17.2-3.3 ncurses-base_5.7+20100313-4 ncurses-bin_5.7+20100313-5 passwd_1:4.1.4.2+svn3283-2 patch_2.6-3 perl_5.10.1-17 perl-base_5.10.1-17 perl-modules_5.10.1-17 po-debconf_1.0.16+nmu1 procps_1:3.2.8-10 readline-common_6.1-3 sed_4.2.1-8 sensible-utils_0.0.6 sudo_1.7.4p4-5 sysv-rc_2.88dsf-13 sysvinit_2.88dsf-13 sysvinit-utils_2.88dsf-13 tar_1.25-3 tzdata_2010o-1 util-linux_2.17.2-3.3 xz-utils_5.0.0-2 zlib1g_1:1.2.3.4.dfsg-3 zlib1g-dev_1:1.2.3.4.dfsg-3
+Toolchain package versions: libc6-dev_2.11.2-10 dpkg-dev_1.15.8.10 linux-libc-dev_2.6.37-2 gcc-4.4_4.4.5-10 g++-4.4_4.4.5-10 binutils_2.20.1-16 libstdc++6-4.4-dev_4.4.5-10 libstdc++6_4.4.5-10
+Package versions: apt_0.8.11.5 autoconf_2.67-2 automake1.9_1.9.6+nogfdl-3.1 autotools-dev_20100122.1 base-files_6.1 base-passwd_3.5.22 bash_4.1-3 binutils_2.20.1-16 bison_1:2.4.1.dfsg-3 bsdmainutils_8.2.2 bsdutils_1:2.17.2-9.1 build-essential_11.5 bzip2_1.0.5-6 chrpath_0.13-2 coreutils_8.5-1 cpio_2.11-7 cpp_4:4.4.5-4 cpp-4.4_4.4.5-10 dash_0.5.5.1-7.4 debconf_1.5.38 debconf-i18n_1.5.38 debhelper_8.1.2 debian-archive-keyring_2010.08.28 debianutils_3.4.4 diffutils_1:3.0-1 dmsetup_2:1.02.63-2 doxygen_1.7.3-5 doxygen-latex_1.7.3-5 dpatch_2.0.31 dpkg_1.15.8.10 dpkg-dev_1.15.8.10 e2fslibs_1.41.12-2 e2fsprogs_1.41.12-2 ed_1.4-3 fakeroot_1.14.5-2 file_5.04-5 findutils_4.4.2-1+b1 fontconfig-config_2.8.0-2.1 g++_4:4.4.5-4 g++-4.4_4.4.5-10 gawk_1:3.1.7.dfsg-5 gcc_4:4.4.5-4 gcc-4.2-base_4.2.4-6 gcc-4.3-base_4.3.5-4 gcc-4.4_4.4.5-10 gcc-4.4-base_4.4.5-10 gettext_0.18.1.1-3 gettext-base_0.18.1.1-3 ghostscript_9.01~dfsg-2 gnupg_1.4.11-3 gpgv_1.4.11-3 grep_2.6.3-3 groff-base_1.21-4 gs-cjk-resource_1.20100103-2 gsfonts_1:8.11+urwcyr1.0.7~pre44-4.2 gzip_1.3.12-9 hardening-wrapper_1.32 hostname_3.06 html2text_1.3.2a-15 initscripts_2.88dsf-13.1 insserv_1.14.0-2 intltool-debian_0.35.0+20060710.1 latex-xcolor_2.11-1 libacl1_2.2.49-4 libattr1_1:2.4.44-2 libavahi-client3_0.6.28-5 libavahi-common-data_0.6.28-5 libavahi-common3_0.6.28-5 libblkid1_2.17.2-9.1 libbz2-1.0_1.0.5-6 libc-bin_2.11.2-10 libc-dev-bin_2.11.2-10 libc6_2.11.2-10 libc6-dev_2.11.2-10 libcomerr2_1.41.12-2 libcroco3_0.6.2-1 libcups2_1.4.6-1 libcupsimage2_1.4.6-1 libdb4.7_4.7.25-12 libdb4.8_4.8.30-5 libdbus-1-3_1.4.6-1 libdevmapper1.02.1_2:1.02.63-2 libdpkg-perl_1.15.8.10 libexpat1_2.0.1-7 libfontconfig1_2.8.0-2.1 libfreetype6_2.4.2-2.1 libgcc4_4.4.5-10 libgcrypt11_1.4.6-5 libgdbm3_1.8.3-9 libglib2.0-0_2.28.1-1+b1 libgmp10_2:5.0.1+dfsg-6 libgmp3c2_2:4.3.2+dfsg-1 libgnutls26_2.10.5-1 libgomp1_4.4.5-10 libgpg-error0_1.10-0.3 libgs9_9.01~dfsg-2 libgs9-common_9.01~dfsg-2 libgssapi-krb5-2_1.8.3+dfsg-5 libice6_2:1.0.7-1 libidn11_1.20-1 libijs-0.35_0.35-7 libjasper1_1.900.1-7 libjbig2dec0_0.11-1 libjpeg62_6b1-1 libk5crypto3_1.8.3+dfsg-5 libkeyutils1_1.4-4 libkpathsea5_2009-8 libkrb5-3_1.8.3+dfsg-5 libkrb5support0_1.8.3+dfsg-5 liblcms1_1.18.dfsg-1.2+b2 liblocale-gettext-perl_1.05-6 liblzma2_5.0.0-2 libmagic1_5.04-5 libmpfr1ldbl_2.4.2-3 libmpfr4_3.0.0-9 libncurses5_5.8+20110307-1 libncurses5-dev_5.8+20110307-1 libncursesw5_5.8+20110307-1 libopenjpeg2_1.3+dfsg-4 libpam-modules_1.1.2-2 libpam-runtime_1.1.2-2 libpam0g_1.1.2-2 libpaper1_1.1.24 libpcre3_8.12-3 libpipeline1_1.1.0-1 libpng12-0_1.2.44-1 libpoppler5_0.12.4-1.2 libreadline-dev_6.1-3 libreadline5_5.2-7 libreadline6_6.1-3 libreadline6-dev_6.1-3 libselinux1_2.0.96-1 libsepol1_2.0.42-1 libslang2_2.2.2-4+b1 libsm6_2:1.2.0-1 libsqlite3-0_3.7.5-1 libss2_1.41.12-2 libssl0.9.8_0.9.8o-5 libstdc++6_4.4.5-10 libstdc++6-4.4-dev_4.4.5-10 libtasn1-3_2.9-2 libtext-charwidth-perl_0.04-6 libtext-iconv-perl_1.7-2 libtext-wrapi18n-perl_0.06-7 libtiff4_3.9.4-6 libtimedate-perl_1.2000-1 libtool_2.2.6b-2 libudev0_166-1 libunistring0_0.9.3-3 libusb-0.1-4_2:0.1.12-17 libuuid1_2.17.2-9.1 libwrap0_7.6.q-19 libwrap0-dev_7.6.q-19 libx11-6_2:1.4.1-5 libx11-data_2:1.4.1-5 libxau6_1:1.0.6-1 libxaw7_2:1.0.9-2 libxcb1_1.7-2 libxdmcp6_1:1.1.0-1 libxext6_2:1.2.0-2 libxml2_2.7.8.dfsg-2 libxmu6_2:1.1.0-1 libxpm4_1:3.5.9-1 libxt6_1:1.1.0-2 linux-libc-dev_2.6.37-2 login_1:4.1.4.2+svn3283-3 lsb-base_3.2-27 lsb-release_3.2-27 luatex_0.60.2-1 lzma_4.43-14 m4_1.4.14-3 make_3.81-8 man-db_2.5.9-4 mawk_1.3.3-15 mime-support_3.51-1 mount_2.17.2-9.1 ncurses-base_5.8-1 ncurses-bin_5.8+20110307-1 passwd_1:4.1.4.2+svn3283-3 patch_2.6.1-1 perl_5.10.1-17 perl-base_5.10.1-17 perl-modules_5.10.1-17 po-debconf_1.0.16+nmu1 preview-latex-style_11.86-2 procps_1:3.2.8-10 psmisc_22.13-1 python_2.6.6-3+squeeze5 python-minimal_2.6.6-3+squeeze5 python-support_1.0.11 python2.6_2.6.6-8+b1 python2.6-minimal_2.6.6-8+b1 readline-common_6.1-3 sed_4.2.1-9 sensible-utils_0.0.6 sudo_1.7.4p6-1 sysv-rc_2.88dsf-13.1 sysvinit_2.88dsf-13.1 sysvinit-utils_2.88dsf-13.1 tar_1.25-3 tex-common_2.08 texlive-base_2009-11 texlive-binaries_2009-8 texlive-common_2009-11 texlive-doc-base_2009-2 texlive-extra-utils_2009-10 texlive-latex-base_2009-11 texlive-latex-extra_2009-10 texlive-latex-recommended_2009-11 texlive-pictures_2009-11 ttf-dejavu-core_2.33-1 tzdata_2011c-1 ucf_3.0025+nmu1 util-linux_2.17.2-9.1 x11-common_1:7.6+4 xz-utils_5.0.0-2 zlib1g_1:1.2.3.4.dfsg-3 zlib1g-dev_1:1.2.3.4.dfsg-3
┌──────────────────────────────────────────────────────────────────────────────┐
│ Build │
@@ -225,12 +118,12 @@ Unpack source
dpkg-source: warning: -sn is not a valid option for Dpkg::Source::Package::V3::quilt
gpgv: keyblock resource `/home/buildd/.gnupg/trustedkeys.gpg': file open error
-gpgv: Signature made Tue Feb 8 07:20:43 2011 UTC using RSA key ID 2295D502
+gpgv: Signature made Fri Mar 11 21:59:41 2011 UTC using DSA key ID C09FD35A
gpgv: Can't check signature: public key not found
-dpkg-source: warning: failed to verify signature on ./bwa_0.5.9-1.dsc
+dpkg-source: warning: failed to verify signature on ./bwa_0.5.9-2.dsc
dpkg-source: info: extracting bwa in bwa-0.5.9
dpkg-source: info: unpacking bwa_0.5.9.orig.tar.bz2
-dpkg-source: info: unpacking bwa_0.5.9-1.debian.tar.gz
+dpkg-source: info: unpacking bwa_0.5.9-2.debian.tar.gz
Check disc space
────────────────
@@ -245,154 +138,156 @@ dpkg-buildpackage: export CXXFLAGS from dpkg-buildflags (origin: vendor): -g -O2
dpkg-buildpackage: export FFLAGS from dpkg-buildflags (origin: vendor): -g -O2
dpkg-buildpackage: export LDFLAGS from dpkg-buildflags (origin: vendor):
dpkg-buildpackage: source package bwa
-dpkg-buildpackage: source version 0.5.9-1
+dpkg-buildpackage: source version 0.5.9-2
dpkg-source --before-build bwa-0.5.9
dpkg-buildpackage: host architecture hppa
/usr/bin/fakeroot debian/rules clean
-test -x debian/rules
-dh_testroot
-rm -f debian/stamp-makefile-build debian/stamp-makefile-install
-/usr/bin/make -C . CFLAGS="-g -O2 -g -Wall -O2" CXXFLAGS="-g -O2 -g -Wall -O2" CPPFLAGS="" LDFLAGS="" -k clean
-make[1]: Entering directory `/build/buildd-bwa_0.5.9-1-hppa-BksjZx/bwa-0.5.9'
-make[2]: Entering directory `/build/buildd-bwa_0.5.9-1-hppa-BksjZx/bwa-0.5.9'
+dh clean
+ dh_testdir
+ dh_auto_clean
+make[1]: Entering directory `/build/buildd-bwa_0.5.9-2-hppa-fpMxJF/bwa-0.5.9'
+make[2]: Entering directory `/build/buildd-bwa_0.5.9-2-hppa-fpMxJF/bwa-0.5.9'
rm -f gmon.out *.o a.out bwa *~ *.a
-make[2]: Leaving directory `/build/buildd-bwa_0.5.9-1-hppa-BksjZx/bwa-0.5.9'
-make[2]: Entering directory `/build/buildd-bwa_0.5.9-1-hppa-BksjZx/bwa-0.5.9/bwt_gen'
+make[2]: Leaving directory `/build/buildd-bwa_0.5.9-2-hppa-fpMxJF/bwa-0.5.9'
+make[2]: Entering directory `/build/buildd-bwa_0.5.9-2-hppa-fpMxJF/bwa-0.5.9/bwt_gen'
rm -f gmon.out *.o a.out *~ *.a
-make[2]: Leaving directory `/build/buildd-bwa_0.5.9-1-hppa-BksjZx/bwa-0.5.9/bwt_gen'
-make[1]: Leaving directory `/build/buildd-bwa_0.5.9-1-hppa-BksjZx/bwa-0.5.9'
-dh_clean
+make[2]: Leaving directory `/build/buildd-bwa_0.5.9-2-hppa-fpMxJF/bwa-0.5.9/bwt_gen'
+make[1]: Leaving directory `/build/buildd-bwa_0.5.9-2-hppa-fpMxJF/bwa-0.5.9'
+ dh_clean
debian/rules build
-test -x debian/rules
-mkdir -p "."
-/usr/bin/make -C . CFLAGS="-g -O2 -g -Wall -O2" CXXFLAGS="-g -O2 -g -Wall -O2" CPPFLAGS="" LDFLAGS=""
-make[1]: Entering directory `/build/buildd-bwa_0.5.9-1-hppa-BksjZx/bwa-0.5.9'
-make[2]: Entering directory `/build/buildd-bwa_0.5.9-1-hppa-BksjZx/bwa-0.5.9'
+dh build
+ dh_testdir
+ dh_auto_configure
+ dh_auto_build
+make[1]: Entering directory `/build/buildd-bwa_0.5.9-2-hppa-fpMxJF/bwa-0.5.9'
+make[2]: Entering directory `/build/buildd-bwa_0.5.9-2-hppa-fpMxJF/bwa-0.5.9'
make[2]: Nothing to be done for `lib'.
-make[2]: Leaving directory `/build/buildd-bwa_0.5.9-1-hppa-BksjZx/bwa-0.5.9'
-make[2]: Entering directory `/build/buildd-bwa_0.5.9-1-hppa-BksjZx/bwa-0.5.9/bwt_gen'
-gcc -c -g -O2 -g -Wall -O2 -DHAVE_PTHREAD bwt_gen.c -o bwt_gen.o
-gcc -c -g -O2 -g -Wall -O2 -DHAVE_PTHREAD QSufSort.c -o QSufSort.o
+make[2]: Leaving directory `/build/buildd-bwa_0.5.9-2-hppa-fpMxJF/bwa-0.5.9'
+make[2]: Entering directory `/build/buildd-bwa_0.5.9-2-hppa-fpMxJF/bwa-0.5.9/bwt_gen'
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD bwt_gen.c -o bwt_gen.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD QSufSort.c -o QSufSort.o
ar -cru libbwtgen.a bwt_gen.o QSufSort.o
-make[2]: Leaving directory `/build/buildd-bwa_0.5.9-1-hppa-BksjZx/bwa-0.5.9/bwt_gen'
-gcc -c -g -O2 -g -Wall -O2 -DHAVE_PTHREAD utils.c -o utils.o
-gcc -c -g -O2 -g -Wall -O2 -DHAVE_PTHREAD bwt.c -o bwt.o
-gcc -c -g -O2 -g -Wall -O2 -DHAVE_PTHREAD bwtio.c -o bwtio.o
-gcc -c -g -O2 -g -Wall -O2 -DHAVE_PTHREAD bwtaln.c -o bwtaln.o
-gcc -c -g -O2 -g -Wall -O2 -DHAVE_PTHREAD bwtgap.c -o bwtgap.o
-gcc -c -g -O2 -g -Wall -O2 -DHAVE_PTHREAD is.c -o is.o
-gcc -c -g -O2 -g -Wall -O2 -DHAVE_PTHREAD bntseq.c -o bntseq.o
-gcc -c -g -O2 -g -Wall -O2 -DHAVE_PTHREAD bwtmisc.c -o bwtmisc.o
-gcc -c -g -O2 -g -Wall -O2 -DHAVE_PTHREAD bwtindex.c -o bwtindex.o
-gcc -c -g -O2 -g -Wall -O2 -DHAVE_PTHREAD stdaln.c -o stdaln.o
-gcc -c -g -O2 -g -Wall -O2 -DHAVE_PTHREAD simple_dp.c -o simple_dp.o
-gcc -c -g -O2 -g -Wall -O2 -DHAVE_PTHREAD bwaseqio.c -o bwaseqio.o
-gcc -c -g -O2 -g -Wall -O2 -DHAVE_PTHREAD bwase.c -o bwase.o
-gcc -c -g -O2 -g -Wall -O2 -DHAVE_PTHREAD bwape.c -o bwape.o
-gcc -c -g -O2 -g -Wall -O2 -DHAVE_PTHREAD kstring.c -o kstring.o
-gcc -c -g -O2 -g -Wall -O2 -DHAVE_PTHREAD cs2nt.c -o cs2nt.o
-gcc -c -g -O2 -g -Wall -O2 -DHAVE_PTHREAD bwtsw2_core.c -o bwtsw2_core.o
-gcc -c -g -O2 -g -Wall -O2 -DHAVE_PTHREAD bwtsw2_main.c -o bwtsw2_main.o
-gcc -c -g -O2 -g -Wall -O2 -DHAVE_PTHREAD bwtsw2_aux.c -o bwtsw2_aux.o
-gcc -c -g -O2 -g -Wall -O2 -DHAVE_PTHREAD bwt_lite.c -o bwt_lite.o
-gcc -c -g -O2 -g -Wall -O2 -DHAVE_PTHREAD bwtsw2_chain.c -o bwtsw2_chain.o
-gcc -c -g -O2 -g -Wall -O2 -DHAVE_PTHREAD bamlite.c -o bamlite.o
-gcc -c -g -O2 -g -Wall -O2 -DHAVE_PTHREAD main.c -o main.o
-gcc -g -O2 -g -Wall -O2 -DHAVE_PTHREAD utils.o bwt.o bwtio.o bwtaln.o bwtgap.o is.o bntseq.o bwtmisc.o bwtindex.o stdaln.o simple_dp.o bwaseqio.o bwase.o bwape.o kstring.o cs2nt.o bwtsw2_core.o bwtsw2_main.o bwtsw2_aux.o bwt_lite.o bwtsw2_chain.o bamlite.o main.o -o bwa -lm -lz -lpthread -Lbwt_gen -lbwtgen
-make[1]: Leaving directory `/build/buildd-bwa_0.5.9-1-hppa-BksjZx/bwa-0.5.9'
-touch debian/stamp-makefile-build
-DEB_MAKE_CHECK_TARGET unset, not running checks
+make[2]: Leaving directory `/build/buildd-bwa_0.5.9-2-hppa-fpMxJF/bwa-0.5.9/bwt_gen'
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD utils.c -o utils.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD bwt.c -o bwt.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD bwtio.c -o bwtio.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD bwtaln.c -o bwtaln.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD bwtgap.c -o bwtgap.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD is.c -o is.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD bntseq.c -o bntseq.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD bwtmisc.c -o bwtmisc.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD bwtindex.c -o bwtindex.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD stdaln.c -o stdaln.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD simple_dp.c -o simple_dp.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD bwaseqio.c -o bwaseqio.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD bwase.c -o bwase.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD bwape.c -o bwape.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD kstring.c -o kstring.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD cs2nt.c -o cs2nt.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD bwtsw2_core.c -o bwtsw2_core.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD bwtsw2_main.c -o bwtsw2_main.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD bwtsw2_aux.c -o bwtsw2_aux.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD bwt_lite.c -o bwt_lite.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD bwtsw2_chain.c -o bwtsw2_chain.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD bamlite.c -o bamlite.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD main.c -o main.o
+gcc -g -Wall -O2 -DHAVE_PTHREAD utils.o bwt.o bwtio.o bwtaln.o bwtgap.o is.o bntseq.o bwtmisc.o bwtindex.o stdaln.o simple_dp.o bwaseqio.o bwase.o bwape.o kstring.o cs2nt.o bwtsw2_core.o bwtsw2_main.o bwtsw2_aux.o bwt_lite.o bwtsw2_chain.o bamlite.o main.o -o bwa -lm -lz -lpthread -Lbwt_gen -lbwtgen
+make[1]: Leaving directory `/build/buildd-bwa_0.5.9-2-hppa-fpMxJF/bwa-0.5.9'
+ dh_auto_test
/usr/bin/fakeroot debian/rules binary-arch
-test -x debian/rules
-dh_testroot
-dh_prep
-dh_installdirs -A
-mkdir -p "."
-DEB_MAKE_CHECK_TARGET unset, not running checks
-DEB_MAKE_INSTALL_TARGET unset, skipping default makefile.mk common-install target
-Adding cdbs dependencies to debian/bwa.substvars
-dh_installdirs -pbwa
-dh_installdocs -pbwa ./README ./NEWS
-dh_installexamples -pbwa
-dh_installman -pbwa
-dh_installinfo -pbwa
-dh_installmenu -pbwa
-dh_installcron -pbwa
-dh_installinit -pbwa
-dh_installdebconf -pbwa
-dh_installemacsen -pbwa
-dh_installcatalogs -pbwa
-dh_installpam -pbwa
-dh_installlogrotate -pbwa
-dh_installlogcheck -pbwa
-dh_installchangelogs -pbwa ./ChangeLog
-dh_installudev -pbwa
-dh_lintian -pbwa
-dh_install -pbwa
-dh_link -pbwa
-dh_installmime -pbwa
-dh_strip -pbwa
-dh_compress -pbwa
-dh_fixperms -pbwa
-dh_makeshlibs -pbwa
-dh_installdeb -pbwa
-dh_perl -pbwa
-dh_shlibdeps -pbwa
-dh_gencontrol -pbwa
+dh binary-arch
+ dh_testroot -a
+ dh_prep -a
+ dh_installdirs -a
+ dh_auto_install -a
+ dh_install -a
+ dh_installdocs -a
+ dh_installchangelogs -a
+ dh_installexamples -a
+ dh_installman -a
+ dh_installcatalogs -a
+ dh_installcron -a
+ dh_installdebconf -a
+ dh_installemacsen -a
+ dh_installifupdown -a
+ dh_installinfo -a
+ dh_pysupport -a
+ dh_installinit -a
+ dh_installmenu -a
+ dh_installmime -a
+ dh_installmodules -a
+ dh_installlogcheck -a
+ dh_installlogrotate -a
+ dh_installpam -a
+ dh_installppp -a
+ dh_installudev -a
+ dh_installwm -a
+ dh_installxfonts -a
+ dh_bugfiles -a
+ dh_lintian -a
+ dh_gconf -a
+ dh_icons -a
+ dh_perl -a
+ dh_usrlocal -a
+ dh_link -a
+ dh_compress -a
+ dh_fixperms -a
+ dh_strip -a
+ dh_makeshlibs -a
+ dh_shlibdeps -a
+ dh_installdeb -a
+ dh_gencontrol -a
dpkg-gencontrol: warning: package bwa: unused substitution variable ${perl:Depends}
-dh_md5sums -pbwa
-dh_builddeb -pbwa
-dpkg-deb: building package `bwa' in `../bwa_0.5.9-1_hppa.deb'.
- dpkg-genchanges -B -mhppa Build Daemon (penalosa) <buildd_hppa-penalosa at buildd.debian.org> >../bwa_0.5.9-1_hppa.changes
+ dh_md5sums -a
+ dh_builddeb -a
+dpkg-deb: building package `bwa' in `../bwa_0.5.9-2_hppa.deb'.
+ dpkg-genchanges -B -mhppa Build Daemon (penalosa) <buildd_hppa-penalosa at buildd.debian.org> >../bwa_0.5.9-2_hppa.changes
dpkg-genchanges: arch-specific upload - not including arch-independent packages
dpkg-genchanges: binary-only upload - not including any source code
dpkg-source --after-build bwa-0.5.9
dpkg-buildpackage: binary only upload (no source included)
────────────────────────────────────────────────────────────────────────────────
-Build finished at 20110208-1003
+Build finished at 20110313-0405
-bwa_0.5.9-1_hppa.changes:
+bwa_0.5.9-2_hppa.changes:
Format: 1.8
-Date: Tue, 08 Feb 2011 16:11:12 +0900
+Date: Fri, 11 Mar 2011 22:49:07 +0100
Source: bwa
Binary: bwa
Architecture: hppa
-Version: 0.5.9-1
+Version: 0.5.9-2
Distribution: sid
Urgency: low
Maintainer: hppa Build Daemon (penalosa) <buildd_hppa-penalosa at buildd.debian.org>
-Changed-By: Charles Plessy <plessy at debian.org>
+Changed-By: Andreas Tille <tille at debian.org>
Description:
bwa - Burrows-Wheeler Aligner
Changes:
- bwa (0.5.9-1) unstable; urgency=low
+ bwa (0.5.9-2) unstable; urgency=low
.
- * New usptream release
- - Upstream moved to GitHub (debian/upstream-metadata.yaml).
- - Checked copyright; one file was removed (debian/copyright).
- * Migrated the Debian source package to Git (debian/control).
- * Use Debhelper 8 (debian/control, debian/compat).
+ * Watchfile should not regard rc releases.
+ * Drop cdbs in favour of dh
Checksums-Sha1:
- 5f06f4df53421a315b9ed18bbc2e6ad8f570862b 150112 bwa_0.5.9-1_hppa.deb
+ 7989ea264e4f301cffcde9f41b93c5aa4fc5f868 150210 bwa_0.5.9-2_hppa.deb
Checksums-Sha256:
- 11bf49e74b9288873f38c3ddc6f779bbe7e0faef75d4956857276ad98596ac92 150112 bwa_0.5.9-1_hppa.deb
+ 9780568f14e8dfa92b0cdbd0638ac80e7e0814ae72113b2528ff14379902261b 150210 bwa_0.5.9-2_hppa.deb
Files:
- c99e9162416bc4686e6236935641fe0c 150112 science optional bwa_0.5.9-1_hppa.deb
+ d934612e9d604994abeec3fdb2addb64 150210 science optional bwa_0.5.9-2_hppa.deb
┌──────────────────────────────────────────────────────────────────────────────┐
│ Package contents │
└──────────────────────────────────────────────────────────────────────────────┘
-bwa_0.5.9-1_hppa.deb
+bwa_0.5.9-2_hppa.deb
────────────────────
new debian package, version 2.0.
- size 150112 bytes: control archive= 970 bytes.
+ size 150210 bytes: control archive= 973 bytes.
774 bytes, 17 lines control
615 bytes, 10 lines md5sums
Package: bwa
- Version: 0.5.9-1
+ Version: 0.5.9-2
Architecture: hppa
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
Installed-Size: 324
@@ -409,25 +304,25 @@ bwa_0.5.9-1_hppa.deb
to around 100 kbp. Both algorithms do gapped alignment. They are usually more
accurate and faster on queries with low error rates.
-drwxr-xr-x root/root 0 2011-02-08 10:03 ./
-drwxr-xr-x root/root 0 2011-02-08 10:03 ./usr/
-drwxr-xr-x root/root 0 2011-02-08 10:03 ./usr/bin/
--rwxr-xr-x root/root 205380 2011-02-08 10:03 ./usr/bin/bwa
-drwxr-xr-x root/root 0 2011-02-08 10:03 ./usr/share/
-drwxr-xr-x root/root 0 2011-02-08 10:03 ./usr/share/bwa/
+drwxr-xr-x root/root 0 2011-03-13 04:04 ./
+drwxr-xr-x root/root 0 2011-03-13 04:04 ./usr/
+drwxr-xr-x root/root 0 2011-03-13 04:05 ./usr/bin/
+-rwxr-xr-x root/root 205380 2011-03-13 04:05 ./usr/bin/bwa
+drwxr-xr-x root/root 0 2011-03-13 04:04 ./usr/share/
+drwxr-xr-x root/root 0 2011-03-13 04:04 ./usr/share/bwa/
-rwxr-xr-x root/root 3176 2011-01-25 00:00 ./usr/share/bwa/solid2fastq.pl
-rwxr-xr-x root/root 616 2011-01-25 00:00 ./usr/share/bwa/qualfa2fq.pl
-drwxr-xr-x root/root 0 2011-02-08 10:03 ./usr/share/doc/
-drwxr-xr-x root/root 0 2011-02-08 10:03 ./usr/share/doc/bwa/
--rw-r--r-- root/root 881 2011-02-08 07:11 ./usr/share/doc/bwa/changelog.Debian.gz
+drwxr-xr-x root/root 0 2011-03-13 04:04 ./usr/share/doc/
+drwxr-xr-x root/root 0 2011-03-13 04:04 ./usr/share/doc/bwa/
+-rw-r--r-- root/root 957 2011-03-11 21:54 ./usr/share/doc/bwa/changelog.Debian.gz
-rw-r--r-- root/root 5857 2011-01-25 00:00 ./usr/share/doc/bwa/NEWS.gz
-rw-r--r-- root/root 17912 2011-01-25 00:00 ./usr/share/doc/bwa/ChangeLog.gz
-rw-r--r-- root/root 634 2011-01-25 00:00 ./usr/share/doc/bwa/README
-rw-r--r-- root/root 2676 2011-02-08 07:09 ./usr/share/doc/bwa/copyright
-rw-r--r-- root/root 17912 2011-01-25 00:00 ./usr/share/doc/bwa/changelog.gz
-drwxr-xr-x root/root 0 2011-02-08 10:03 ./usr/share/man/
-drwxr-xr-x root/root 0 2011-02-08 10:03 ./usr/share/man/man1/
--rw-r--r-- root/root 7554 2011-02-08 10:03 ./usr/share/man/man1/bwa.1.gz
+drwxr-xr-x root/root 0 2011-03-13 04:04 ./usr/share/man/
+drwxr-xr-x root/root 0 2011-03-13 04:04 ./usr/share/man/man1/
+-rw-r--r-- root/root 7554 2011-03-13 04:04 ./usr/share/man/man1/bwa.1.gz
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -436,32 +331,8 @@ drwxr-xr-x root/root 0 2011-02-08 10:03 ./usr/share/man/man1/
Built successfully
────────────────────────────────────────────────────────────────────────────────
-Purging /var/lib/schroot/mount/sid-hppa-sbuild-adf641b4-c3b2-44bf-801b-b6f703ce29e4/build/buildd-bwa_0.5.9-1-hppa-BksjZx
-(Reading database ... 12786 files and directories currently installed.)
-Removing zlib1g-dev ...
-Removing cdbs ...
-Removing debhelper ...
-Removing po-debconf ...
-Removing intltool-debian ...
-Removing gettext ...
-Removing html2text ...
-Purging configuration files for html2text ...
-Removing gettext-base ...
-Removing man-db ...
-Purging configuration files for man-db ...
-Removing libunistring0 ...
-Purging configuration files for libunistring0 ...
-Removing groff-base ...
-Purging configuration files for groff-base ...
-Removing libcroco3 ...
-Purging configuration files for libcroco3 ...
-Removing libxml2 ...
-Purging configuration files for libxml2 ...
-Removing libglib2.0-0 ...
-Purging configuration files for libglib2.0-0 ...
-Removing libpcre3 ...
-Purging configuration files for libpcre3 ...
+Purging /var/lib/schroot/mount/sid-hppa-sbuild-ae24f9fd-6a14-441e-9f33-0661c2035409/build/buildd-bwa_0.5.9-2-hppa-fpMxJF
────────────────────────────────────────────────────────────────────────────────
-Finished at 20110208-1003
-Build needed 00:02:56, 2580k disc space
+Finished at 20110313-0405
+Build needed 00:01:38, 2580k disc space
diff --git a/hurd-i386.log b/hurd-i386.log
index b7d7c5a..955e939 100644
--- a/hurd-i386.log
+++ b/hurd-i386.log
@@ -1,38 +1,68 @@
-From buildd at bach.debian.net Tue Feb 08 09:15:20 2011
-Return-path: <buildd at bach.debian.net>
+From buildd at mozart.debian.net Sat Mar 12 08:34:32 2011
+Return-path: <buildd at mozart.debian.net>
Received: from callisto.debian.net ([80.87.129.151])
by grieg.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
- (Exim 4.69) (envelope-from <buildd at bach.debian.net>)
- id 1PmjfM-000562-1O
- for logs at buildd.debian.org; Tue, 08 Feb 2011 09:15:20 +0000
-Received: from bach.debian.net ([10.3.0.1])
+ (Exim 4.69) (envelope-from <buildd at mozart.debian.net>)
+ id 1PyKHP-0000qs-Nm
+ for logs at buildd.debian.org; Sat, 12 Mar 2011 08:34:32 +0000
+Received: from mozart.debian.net ([10.1.0.1])
by callisto.debian.net with esmtp (Exim 4.69)
- (envelope-from <buildd at bach.debian.net>)
- id 1PmjfK-0004na-1C; Tue, 08 Feb 2011 09:15:18 +0000
-Received: from buildd by bach.debian.net with local (Exim 4.72)
- (envelope-from <buildd at bach.debian.net>)
- id 1PmjfN-0004eP-Po; Tue, 08 Feb 2011 09:15:23 +0000
-Date: Tue, 08 Feb 2011 09:15:21 +0000
-Message-Id: <E1PmjfN-0004eP-Po at bach.debian.net>
-From: Build Daemon <buildd at bach.debian.net>
+ (envelope-from <buildd at mozart.debian.net>)
+ id 1PyKHM-0002p4-2F; Sat, 12 Mar 2011 08:34:28 +0000
+Received: from buildd by mozart.debian.net with local (Exim 4.72)
+ (envelope-from <buildd at mozart.debian.net>)
+ id 1PyKHO-00078M-BD; Sat, 12 Mar 2011 08:34:30 +0000
+Date: Sat, 12 Mar 2011 08:34:30 +0000
+Message-Id: <E1PyKHO-00078M-BD at mozart.debian.net>
+From: Build Daemon <buildd at mozart.debian.net>
To: samuel.thibault at labri.fr, mbanck at gmx.net, logs at debian-ports.org,
logs at buildd.debian.org, debian-hurd-build-logs at lists.alioth.debian.org
-Subject: Log for successful build of bwa_0.5.9-1 on hurd-i386 (dist=sid)
+Subject: Log for successful build of bwa_0.5.9-2 on hurd-i386 (dist=sid)
Content-Type: text/plain; charset=UTF-8
Content-Transfer-Encoding: 8bit
Delivered-To: logs at buildd.debian.org
-sbuild (Debian sbuild) 0.59.1 (31 Jan 2010) on bach.debian.net
+sbuild (Debian sbuild) 0.59.1 (31 Jan 2010) on mozart.debian.net
╔══════════════════════════════════════════════════════════════════════════════╗
-║ bwa 0.5.9-1 (hurd-i386) 08 févr. 2011 09:02 ║
+║ bwa 0.5.9-2 (hurd-i386) 12 mars 2011 08:31 ║
╚══════════════════════════════════════════════════════════════════════════════╝
Package: bwa
-Version: 0.5.9-1
+Version: 0.5.9-2
Architecture: hurd-i386
-Chroot Build Dir: /home/buildd/build/chroot-sid/build/buildd-bwa_0.5.9-1-hurd-i386-GXKWi8
-Start Time: 20110208-0902
+Chroot Build Dir: /home/buildd/build/chroot-sid/build/buildd-bwa_0.5.9-2-hurd-i386-1stCUo
+Start Time: 20110312-0831
+Ign file: ./ InRelease
+Ign file: ./ Release.gpg
+Ign file: ./ Release
+Ign file: ./ Translation-en
+Hit http://ftp.uk.debian.org sid InRelease
+Ign http://ftp.debian-ports.org unreleased InRelease
+Hit http://ftp.debian-ports.org unreleased Release.gpg
+Ign http://incoming.debian.org InRelease
+Hit http://ftp.debian-ports.org unreleased Release
+Hit http://ftp.uk.debian.org sid/main Sources/DiffIndex
+Hit http://incoming.debian.org Release.gpg
+Hit http://ftp.uk.debian.org sid/contrib Sources/DiffIndex
+Hit http://ftp.uk.debian.org sid/non-free Sources/DiffIndex
+Hit http://ftp.uk.debian.org sid/main hurd-i386 Packages/DiffIndex
+Hit http://ftp.uk.debian.org sid/contrib hurd-i386 Packages/DiffIndex
+Hit http://ftp.uk.debian.org sid/non-free hurd-i386 Packages/DiffIndex
+Ign http://ftp.uk.debian.org sid/contrib TranslationIndex
+Hit http://ftp.uk.debian.org sid/main TranslationIndex
+Ign http://ftp.uk.debian.org sid/non-free TranslationIndex
+Hit http://ftp.debian-ports.org unreleased/main hurd-i386 Packages
+Hit http://incoming.debian.org Release
+Ign http://ftp.debian-ports.org unreleased/main TranslationIndex
+Ign http://ftp.uk.debian.org sid/contrib Translation-en
+Ign http://ftp.uk.debian.org sid/non-free Translation-en
+Ign http://ftp.debian-ports.org unreleased/main Translation-en
+Hit http://incoming.debian.org Sources
+Get:1 http://incoming.debian.org Packages [486 kB]
+Ign http://incoming.debian.org Translation-en
+Fetched 486 kB in 53s (9135 B/s)
+Reading package lists...
┌──────────────────────────────────────────────────────────────────────────────┐
│ Fetch source files │
@@ -44,60 +74,6 @@ Check APT
Checking available source versions...
-Update APT
-──────────
-
-Ign file: ./ Release.gpg
-Ign file:/build/local-debs/ ./ Translation-en
-Ign file: ./ Release
-Ign file: ./ Packages
-Get:1 http://ftp.debian-ports.org unreleased Release.gpg [835 B]
-Ign http://ftp.debian-ports.org/debian/ unreleased/main Translation-en
-Get:2 http://ftp.debian-ports.org unreleased Release [17.4 kB]
-Get:3 http://incoming.debian.org Release.gpg [835 B]
-Ign http://incoming.debian.org/buildd-unstable/ Translation-en
-Get:4 http://incoming.debian.org Release [1604 B]
-Hit http://ftp.debian-ports.org unreleased/main hurd-i386 Packages
-Get:5 http://incoming.debian.org Sources [43.1 kB]
-Get:6 http://ftp.uk.debian.org sid Release.gpg [835 B]
-Ign http://ftp.uk.debian.org/debian/ sid/contrib Translation-en
-Ign http://ftp.uk.debian.org/debian/ sid/main Translation-en
-Ign http://ftp.uk.debian.org/debian/ sid/non-free Translation-en
-Get:7 http://ftp.uk.debian.org sid Release [104 kB]
-Get:8 http://incoming.debian.org Packages [680 kB]
-Get:9 http://ftp.uk.debian.org sid/main Sources/DiffIndex [2038 B]
-Hit http://ftp.uk.debian.org sid/contrib Sources/DiffIndex
-Get:10 http://ftp.uk.debian.org sid/non-free Sources/DiffIndex [2023 B]
-Get:11 http://ftp.uk.debian.org sid/main hurd-i386 Packages/DiffIndex [2038 B]
-Get:12 http://ftp.uk.debian.org sid/contrib hurd-i386 Packages/DiffIndex [2023 B]
-Get:13 http://ftp.uk.debian.org sid/non-free hurd-i386 Packages/DiffIndex [2023 B]
-Get:14 http://ftp.uk.debian.org sid/main 2011-02-07-2014.05.pdiff [30.3 kB]
-Get:15 http://ftp.uk.debian.org sid/main 2011-02-07-2014.05.pdiff [30.3 kB]
-Get:16 http://ftp.uk.debian.org sid/main 2011-02-07-2014.05.pdiff [30.3 kB]
-Get:17 http://ftp.uk.debian.org sid/non-free 2011-02-07-2014.05.pdiff [235 B]
-Get:18 http://ftp.uk.debian.org sid/non-free 2011-02-07-2014.05.pdiff [235 B]
-Get:19 http://ftp.uk.debian.org sid/main hurd-i386 2011-02-07-2014.05.pdiff [104 kB]
-Get:20 http://ftp.uk.debian.org sid/main hurd-i386 2011-02-07-2014.05.pdiff [104 kB]
-Get:21 http://ftp.uk.debian.org sid/contrib hurd-i386 2011-02-07-2014.05.pdiff [719 B]
-Get:22 http://ftp.uk.debian.org sid/contrib hurd-i386 2011-02-07-2014.05.pdiff [719 B]
-Get:23 http://ftp.uk.debian.org sid/non-free hurd-i386 2011-02-07-2014.05.pdiff [42 B]
-Get:24 http://ftp.uk.debian.org sid/non-free hurd-i386 2011-02-07-2014.05.pdiff [42 B]
-Get:25 http://ftp.uk.debian.org sid/non-free 2011-02-07-2014.05.pdiff [235 B]
-Get:26 http://ftp.uk.debian.org sid/main hurd-i386 2011-02-07-2014.05.pdiff [104 kB]
-Ign http://ftp.uk.debian.org sid/main 2011-02-08-0211.24.pdiff
-Ign http://ftp.uk.debian.org sid/non-free 2011-02-08-0211.24.pdiff
-Get:27 http://ftp.uk.debian.org sid/main [4117 kB]
-Get:28 http://ftp.uk.debian.org sid/non-free [83.8 kB]
-Get:29 http://ftp.uk.debian.org sid/contrib hurd-i386 2011-02-07-2014.05.pdiff [719 B]
-Get:30 http://ftp.uk.debian.org sid/non-free hurd-i386 2011-02-07-2014.05.pdiff [42 B]
-Fetched 5195 kB in 4min 21s (19.9 kB/s)
-W: Failed to fetch http://ftp.uk.debian.org/debian/dists/sid/main/source/Sources.bz2 Hash Sum mismatch
-
-W: Failed to fetch http://ftp.uk.debian.org/debian/dists/sid/non-free/source/Sources.bz2 Hash Sum mismatch
-
-E: Some index files failed to download, they have been ignored, or old ones used instead.
-Checking available source versions...
-
Download source files with APT
──────────────────────────────
@@ -107,59 +83,32 @@ Reading state information...
NOTICE: 'bwa' packaging is maintained in the 'Git' version control system at:
git://git.debian.org/git/debian-med/bwa.git
Need to get 119 kB of source archives.
-Get:1 http://incoming.debian.org/buildd-unstable/ bwa 0.5.9-1 (dsc) [1894 B]
-Get:2 http://incoming.debian.org/buildd-unstable/ bwa 0.5.9-1 (tar) [114 kB]
-Get:3 http://incoming.debian.org/buildd-unstable/ bwa 0.5.9-1 (diff) [3651 B]
-Fetched 119 kB in 0s (140 kB/s)
+Get:1 http://incoming.debian.org/buildd-unstable/ bwa 0.5.9-2 (dsc) [1245 B]
+Get:2 http://incoming.debian.org/buildd-unstable/ bwa 0.5.9-2 (tar) [114 kB]
+Get:3 http://incoming.debian.org/buildd-unstable/ bwa 0.5.9-2 (diff) [3828 B]
+Fetched 119 kB in 0s (154 kB/s)
Download complete and in download only mode
Check arch
──────────
** Using build dependencies supplied by package:
-Build-Depends: cdbs, debhelper (>= 8), zlib1g-dev
+Build-Depends: debhelper (>= 8), zlib1g-dev
┌──────────────────────────────────────────────────────────────────────────────┐
│ Install build dependencies (internal resolver) │
└──────────────────────────────────────────────────────────────────────────────┘
Checking for already installed source dependencies...
-cdbs: missing
-debhelper: already installed (8.0.0 >= 8 is satisfied)
-zlib1g-dev: missing
+debhelper: already installed (8.1.2 >= 8 is satisfied)
+zlib1g-dev: already installed (1:1.2.3.4.dfsg-3)
Checking for source dependency conflicts...
-Installing positive dependencies: cdbs zlib1g-dev
-Reading package lists...
-Building dependency tree...
-Reading state information...
-The following packages were automatically installed and are no longer required:
- libpopt0 libwrap0 libsysfs2 libusb-0.1-4p
-Use 'apt-get autoremove' to remove them.
-Suggested packages:
- devscripts doc-base
-Recommended packages:
- autotools-dev
-The following NEW packages will be installed:
- cdbs zlib1g-dev
-0 upgraded, 2 newly installed, 0 to remove and 48 not upgraded.
-Need to get 0 B/1426 kB of archives.
-After this operation, 2114 kB of additional disk space will be used.
-WARNING: The following packages cannot be authenticated!
- cdbs zlib1g-dev
-Authentication warning overridden.
-Selecting previously deselected package cdbs.
-(Reading database ... 12173 files and directories currently installed.)
-Unpacking cdbs (from .../archives/cdbs_0.4.89_all.deb) ...
-Selecting previously deselected package zlib1g-dev.
-Unpacking zlib1g-dev (from .../zlib1g-dev_1%3a1.2.3.4.dfsg-3_hurd-i386.deb) ...
-Processing triggers for man-db ...
-Setting up cdbs (0.4.89) ...
-Setting up zlib1g-dev (1:1.2.3.4.dfsg-3) ...
+Installing positive dependencies:
Removing negative dependencies:
Checking correctness of source dependencies...
Kernel: GNU 0.3 hurd-i386 (i686-AT386)
-Toolchain package versions: libc0.3-dev_2.11.2-10 dpkg-dev_1.15.8.5 hurd-dev_20100926-1 gnumach-dev_2:1.3.99.dfsg.git20100732-1 gcc-4.4_4.4.5-10 g++-4.4_4.4.5-10 binutils_2.20.1-15 libstdc++6-4.4-dev_4.4.5-10 libstdc++6_4.4.5-10
-Package versions: adduser_3.112+nmu1 apt_0.8.10 apt-utils_0.8.10 base-files_5.9 base-passwd_3.5.22 bash_4.1-3 binutils_2.20.1-15 bsd-mailx_8.1.2-0.20100314cvs-1 bsdmainutils_8.0.13 bsdutils_1:2.16.2-0 build-essential_11.5 bzip2_1.0.5-6 cdbs_0.4.89 coreutils_8.5-1 cpp_4:4.4.5-2 cpp-4.4_4.4.5-10 cron_3.0pl1-116 dash_0.5.5.1-7 debconf_1.5.35 debconf-english_1.5.35 debfoster_2.6-2 debhelper_8.0.0 debian-archive-keyring_2010.08.28 debian-ports-archive-keyring_2011.01.12 debianutils_3.4.1 deborphan_1.7.28 dialog_1.1-20100428-1 diffutils_1:3.0-1 dpkg_1.15.8.5 dpkg-dev_1.15.8.5 e2fslibs_1.41.12-2 e2fsprogs_1.41.12-2 exim4-base_4.72-3+b1 exim4-config_4.72-3 exim4-daemon-light_4.72-3+b1 fakeroot_1.12.4 file_5.03-5+b1 findutils_4.4.2-1 fontconfig_2.8.0-2.1 fontconfig-config_2.8.0-2.1 g++_4:4.4.4-2 g++-4.4_4.4.5-10 gawk_1:3.1.7.dfsg-5 gcc_4:4.4.5-2 gcc-4.2-base_4.2.4-6+b1 gcc-4.4_4.4.5-10 gcc-4.4-base_4.4.5-10 gettext_0.18.1.1-3 gettext-base_0.18.1.1-3 gnumach_2:1.3.99.dfsg.git20100732-1 gnumach-dev_2:1.3.99.dfsg.git20100732-1 gnupg_1.4.10-4 gpgv_1.4.10-4 grep_2.6.3-3 groff-base_1.20.1-10 gzip_1.3.12-9 hostname_3.04 html2text_1.3.2a-15 hurd_20100926-1 hurd-dev_20100926-1 initscripts_2.88dsf-12 insserv_1.14.0-2 install-info_4.13a.dfsg.1-5 intltool-debian_0.35.0+20060710.1 libacl1_2.2.47-3 libattr1_1:2.4.44-2 libblkid1_2.16.2-0 libbz2-1.0_1.0.5-6 libc-bin_2.11.2-10 libc-dev-bin_2.11.2-10 libc0.3_2.11.2-10 libc0.3-dev_2.11.2-10 libc0.3-xen_2.11.2-10 libcomerr2_1.41.12-2 libcroco3_0.6.2-1 libdb4.7_4.7.25-9 libdb4.8_4.8.30-4 libdpkg-perl_1.15.8.5 libexpat1_2.0.1-7 libfontconfig1_2.8.0-2.1 libfreetype6_2.4.2-2.1 libgcc1_1:4.4.5-10 libgcrypt11_1.4.5-2 libgdbm3_1.8.3-9 libglib2.0-0_2.24.2-1 libgmp3c2_2:4.3.2+dfsg-1 libgnutls26_2.8.5-2 libgomp1_4.4.5-10 libgpg-error0_1.10-0.3 libldap-2.4-2_2.4.17-1 liblocale-gettext-perl_1.05-6 liblockfile1_1.08-4 liblzma2_5.0.0-2 libmagic1_5.03-5+b1 libmpfr4_3.0.0-2 libncurses5_5.7+20100313-5 libncursesw5_5.7+20100313-5 libpam-modules_1.1.1-6 libpam-runtime_1.1.1-6 libpam0g_1.1.1-6.1 libparted0debian1_2.3-3+hurd.1 libpcre3_8.02-1.1 libpng12-0_1.2.44-1 libpopt0_1.16-1 libpthread-stubs0_0.3-2 libpthread-stubs0-dev_0.3-2 libreadline6_6.1-3 libsasl2-2_2.1.23.dfsg1-5.1 libsasl2-modules_2.1.23.dfsg1-5.1 libslang2_2.1.4-3 libss2_1.41.12-2 libssl0.9.8_0.9.8o-4 libstdc++6_4.4.5-10 libstdc++6-4.4-dev_4.4.5-10 libsysfs2_2.1.0+repack-1 libtasn1-3_2.7-1 libtext-charwidth-perl_0.04-6 libtext-iconv-perl_1.7-2 libtext-wrapi18n-perl_0.06-7 libtimedate-perl_1.2000-1 libunistring0_0.9.3-3 libusb-0.1-4p_2:0.1.12-13+hurd.1 libuuid1_2.16.2-0 libwrap0_7.6.dbs-8 libxml2_2.7.8.dfsg-2 lsb-base_3.2-25 make_3.81-8 man-db_2.5.7-4 mawk_1.3.3-15 ncurses-base_5.7+20100313-4 ncurses-bin_5.7+20100313-5 netbase_4.42 passwd_1:4.1.4.2+svn3283-2 patch_2.6-3 perl_5.10.1-17 perl-base_5.10.1-17 perl-modules_5.10.1-17 po-debconf_1.0.16 procps_1:3.2.7-11 psmisc_22.3-1 readline-common_6.1-3 sed_4.2.1-7 sensible-utils_0.0.4 sgml-base_1.26+nmu1 shared-mime-info_0.71-3 sudo_1.7.2p7-1 sysv-rc_2.88dsf-12 sysvinit_2.88dsf-12 sysvinit-utils_2.88dsf-12 tar_1.23-3 ttf-bitstream-vera_1.10-8 ttf-dejavu-core_2.31-1 ttf-freefont_20090104-7 type-handling_0.2.23 tzdata_2010m-1 ucf_3.0025+nmu1 util-linux_2.16.2-0 xml-core_0.13 xz-utils_4.999.9beta+20100810-1 zlib1g_1:1.2.3.4.dfsg-3 zlib1g-dev_1:1.2.3.4.dfsg-3
+Toolchain package versions: libc0.3-dev_2.11.2-13 dpkg-dev_1.15.8.10 hurd-dev_20110303-1~1 gnumach-dev_2:1.3.99.dfsg.git20100732-1 gcc-4.4_4.4.5-10 g++-4.4_4.4.5-10 binutils_2.20.1-15 libstdc++6-4.4-dev_4.4.5-10 libstdc++6_4.5.2-4
+Package versions: adduser_3.112+nmu1 apt_0.8.11.5+b1 apt-utils_0.8.11.5+b1 base-files_5.9 base-passwd_3.5.22 bash_4.1-3+hurd.1 binutils_2.20.1-15 bsdmainutils_8.0.13 bsdutils_1:2.16.2-0 build-essential_11.5 bzip2_1.0.5-6 coreutils_8.5-1 cpp_4:4.4.5-4 cpp-4.4_4.4.5-10 cron_3.0pl1-115 dash_0.5.5.1-7 debconf_1.5.35 debconf-english_1.5.35 debfoster_2.6-2 debhelper_8.1.2 debian-archive-keyring_2010.08.28 debian-ports-archive-keyring_2011.01.12 debianutils_3.4.1 deborphan_1.7.28 dialog_1.1-20100428-1 diffutils_1:3.0-1 dpkg_1.15.8.5 dpkg-dev_1.15.8.10 e2fslibs_1.41.12-2 e2fsprogs_1.41.12-2 fakeroot_1.12.4 file_5.03-5+b1 findutils_4.4.2-1 fontconfig_2.8.0-2.1 fontconfig-config_2.8.0-2.1 g++_4:4.4.4-2 g++-4.4_4.4.5-10 gawk_1:3.1.7.dfsg-5 gcc_4:4.4.5-4 gcc-4.4_4.4.5-10 gcc-4.4-base_4.4.5-10 gcc-4.5-base_4.5.2-4 gettext_0.18.1.1-3 gettext-base_0.18.1.1-3 gfortran-4.4_4.4.5-10 gnumach-dev_2:1.3.99.dfsg.git20100732-1 gnupg_1.4.10-4 gpgv_1.4.10-4 grep_2.6.3-3 groff-base_1.21-4 gzip_1.3.12-9 hostname_3.04 html2text_1.3.2a-15+b1 hurd_20110303-1~1 hurd-dev_20110303-1~1 initscripts_2.88dsf-12 insserv_1.14.0-2 install-info_4.13a.dfsg.1-5 intltool-debian_0.35.0+20060710.1 libacl1_2.2.47-3 libapt-pkg-dev_0.8.11.5+b1 libattr1_1:2.4.44-2 libblkid1_2.16.2-0 libboost-iostreams1.42.0_1.42.0-4 libbsd0_0.2.0-1 libbz2-1.0_1.0.5-6 libc-bin_2.11.2-13 libc-dev-bin_2.11.2-13 libc0.3_2.11.2-13 libc0.3-dev_2.11.2-13 libc0.3-xen_2.11.2-13 libcomerr2_1.41.12-2 libcroco3_0.6.2-1 libdb4.7_4.7.25-12 libdb4.8_4.8.30-5 libdigest-sha1-perl_2.13-1 libdpkg-perl_1.15.8.10 libept-dev_1.0.3+b2 libept1_1.0.3+b2 libexpat1_2.0.1-7 libfontconfig1_2.8.0-2.1 libfreetype6_2.4.4-1 libgcc1_1:4.4.5-10 libgcrypt11_1.4.6-5 libgdbm3_1.8.3-9 libgfortran3_4.4.5-10 libglib2.0-0_2.28.1-1+b1 libglib2.0-data_2.28.0-1 libgmp3c2_2:4.3.2+dfsg-1+b1 libgmpxx4ldbl_2:5.0.1+dfsg-6 libgnutls26_2.10.4-2 libgomp1_4.4.5-10 libgpg-error0_1.10-0.3 libidn11_1.20-1 libldap-2.4-2_2.4.17-1 liblocale-gettext-perl_1.05-6 liblzma2_5.0.0-2 libmagic1_5.03-5+b1 libmpfr4_3.0.0-7 libncurses5_5.8+20110307-1 libncursesw5_5.8+20110307-1 libpam-modules_1.1.1-6 libpam-runtime_1.1.1-6 libpam0g_1.1.2-2 libparted0debian1_2.3-3+hurd.1 libpcre3_8.12-3+b1 libpng12-0_1.2.44-1 libpopt0_1.16-1 libpthread-stubs0_0.3-2 libpthread-stubs0-dev_0.3-2 libreadline6_6.1-3 libsasl2-2_2.1.23.dfsg1-7 libsasl2-modules_2.1.23.dfsg1-7 libslang2_2.1.4-3 libss2_1.41.12-2 libssl0.9.8_0.9.8o-5 libstdc++6_4.5.2-4 libstdc++6-4.4-dev_4.4.5-10 libtagcoll2-dev_2.0.11-1.1 libtasn1-3_2.9-2 libtimedate-perl_1.2000-1 libunistring0_0.9.3-3 libuuid1_2.16.2-0 libwibble-dev_0.1.26-1 libwrap0_7.6.dbs-8 libxapian-dev_1.2.3-2 libxapian22_1.2.3-2 libxml2_2.7.8.dfsg-2 lsb-base_3.2-25 lynx-cur_2.8.8dev.8-1 make_3.81-8 man-db_2.5.7-4 mawk_1.3.3-15 mime-support_3.48-1 ncurses-base_5.7+20100313-4 ncurses-bin_5.8+20110307-1 netbase_4.42 netcat-traditional_1.10-38 passwd_1:4.1.4.2+svn3283-2 patch_2.6-3 perl_5.10.1-17 perl-base_5.10.1-17 perl-modules_5.10.1-17 pkg-config_0.25-1 po-debconf_1.0.16 procps_1:3.2.7-11 psmisc_22.3-1 random-egd_0.5-0+hurd.1 readline-common_6.1-3 sed_4.2.1-7 sensible-utils_0.0.4 sgml-base_1.26+nmu1 shared-mime-info_0.71-3 sudo_1.7.2p7-1 sysv-rc_2.88dsf-12 sysvinit_2.88dsf-12 sysvinit-utils_2.88dsf-12 tar_1.23-3 ttf-dejavu-core_2.31-1 type-handling_0.2.23 tzdata_2010m-1 ucf_3.0025+nmu1 util-linux_2.16.2-0 xml-core_0.13 xz-utils_4.999.9beta+20100810-1 zlib1g_1:1.2.3.4.dfsg-3 zlib1g-dev_1:1.2.3.4.dfsg-3
┌──────────────────────────────────────────────────────────────────────────────┐
│ Build │
@@ -171,12 +120,12 @@ Unpack source
dpkg-source: warning: -sn is not a valid option for Dpkg::Source::Package::V3::quilt
gpgv: keyblock resource `/home/buildd/.gnupg/trustedkeys.gpg': file open error
-gpgv: Signature made Tue Feb 8 07:20:43 2011 UTC using RSA key ID 2295D502
+gpgv: Signature made Fri Mar 11 21:59:41 2011 UTC using DSA key ID C09FD35A
gpgv: Can't check signature: public key not found
-dpkg-source: warning: failed to verify signature on ./bwa_0.5.9-1.dsc
+dpkg-source: warning: failed to verify signature on ./bwa_0.5.9-2.dsc
dpkg-source: info: extracting bwa in bwa-0.5.9
dpkg-source: info: unpacking bwa_0.5.9.orig.tar.bz2
-dpkg-source: info: unpacking bwa_0.5.9-1.debian.tar.gz
+dpkg-source: info: unpacking bwa_0.5.9-2.debian.tar.gz
Check disc space
────────────────
@@ -185,160 +134,161 @@ Check disc space
dpkg-buildpackage
─────────────────
- dpkg-source --before-build bwa-0.5.9
dpkg-buildpackage: export CFLAGS from dpkg-buildflags (origin: vendor): -g -O2
dpkg-buildpackage: export CPPFLAGS from dpkg-buildflags (origin: vendor):
dpkg-buildpackage: export CXXFLAGS from dpkg-buildflags (origin: vendor): -g -O2
dpkg-buildpackage: export FFLAGS from dpkg-buildflags (origin: vendor): -g -O2
dpkg-buildpackage: export LDFLAGS from dpkg-buildflags (origin: vendor):
dpkg-buildpackage: source package bwa
-dpkg-buildpackage: source version 0.5.9-1
+dpkg-buildpackage: source version 0.5.9-2
+ dpkg-source --before-build bwa-0.5.9
dpkg-buildpackage: host architecture hurd-i386
/usr/bin/fakeroot debian/rules clean
-test -x debian/rules
-dh_testroot
-rm -f debian/stamp-makefile-build debian/stamp-makefile-install
-/usr/bin/make -C . CFLAGS="-g -O2 -g -Wall -O2" CXXFLAGS="-g -O2 -g -Wall -O2" CPPFLAGS="" LDFLAGS="" -k clean
-make[1]: Entering directory `/build/buildd-bwa_0.5.9-1-hurd-i386-GXKWi8/bwa-0.5.9'
-make[2]: Entering directory `/build/buildd-bwa_0.5.9-1-hurd-i386-GXKWi8/bwa-0.5.9'
+dh clean
+ dh_testdir
+ dh_auto_clean
+make[1]: Entering directory `/build/buildd-bwa_0.5.9-2-hurd-i386-1stCUo/bwa-0.5.9'
+make[2]: Entering directory `/build/buildd-bwa_0.5.9-2-hurd-i386-1stCUo/bwa-0.5.9'
rm -f gmon.out *.o a.out bwa *~ *.a
-make[2]: Leaving directory `/build/buildd-bwa_0.5.9-1-hurd-i386-GXKWi8/bwa-0.5.9'
-make[2]: Entering directory `/build/buildd-bwa_0.5.9-1-hurd-i386-GXKWi8/bwa-0.5.9/bwt_gen'
+make[2]: Leaving directory `/build/buildd-bwa_0.5.9-2-hurd-i386-1stCUo/bwa-0.5.9'
+make[2]: Entering directory `/build/buildd-bwa_0.5.9-2-hurd-i386-1stCUo/bwa-0.5.9/bwt_gen'
rm -f gmon.out *.o a.out *~ *.a
-make[2]: Leaving directory `/build/buildd-bwa_0.5.9-1-hurd-i386-GXKWi8/bwa-0.5.9/bwt_gen'
-make[1]: Leaving directory `/build/buildd-bwa_0.5.9-1-hurd-i386-GXKWi8/bwa-0.5.9'
-dh_clean
+make[2]: Leaving directory `/build/buildd-bwa_0.5.9-2-hurd-i386-1stCUo/bwa-0.5.9/bwt_gen'
+make[1]: Leaving directory `/build/buildd-bwa_0.5.9-2-hurd-i386-1stCUo/bwa-0.5.9'
+ dh_clean
debian/rules build
-test -x debian/rules
-mkdir -p "."
-/usr/bin/make -C . CFLAGS="-g -O2 -g -Wall -O2" CXXFLAGS="-g -O2 -g -Wall -O2" CPPFLAGS="" LDFLAGS=""
-make[1]: Entering directory `/build/buildd-bwa_0.5.9-1-hurd-i386-GXKWi8/bwa-0.5.9'
-make[2]: Entering directory `/build/buildd-bwa_0.5.9-1-hurd-i386-GXKWi8/bwa-0.5.9'
+dh build
+ dh_testdir
+ dh_auto_configure
+ dh_auto_build
+make[1]: Entering directory `/build/buildd-bwa_0.5.9-2-hurd-i386-1stCUo/bwa-0.5.9'
+make[2]: Entering directory `/build/buildd-bwa_0.5.9-2-hurd-i386-1stCUo/bwa-0.5.9'
make[2]: Nothing to be done for `lib'.
-make[2]: Leaving directory `/build/buildd-bwa_0.5.9-1-hurd-i386-GXKWi8/bwa-0.5.9'
-make[2]: Entering directory `/build/buildd-bwa_0.5.9-1-hurd-i386-GXKWi8/bwa-0.5.9/bwt_gen'
-gcc -c -g -O2 -g -Wall -O2 -DHAVE_PTHREAD bwt_gen.c -o bwt_gen.o
-gcc -c -g -O2 -g -Wall -O2 -DHAVE_PTHREAD QSufSort.c -o QSufSort.o
+make[2]: Leaving directory `/build/buildd-bwa_0.5.9-2-hurd-i386-1stCUo/bwa-0.5.9'
+make[2]: Entering directory `/build/buildd-bwa_0.5.9-2-hurd-i386-1stCUo/bwa-0.5.9/bwt_gen'
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD bwt_gen.c -o bwt_gen.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD QSufSort.c -o QSufSort.o
ar -cru libbwtgen.a bwt_gen.o QSufSort.o
-make[2]: Leaving directory `/build/buildd-bwa_0.5.9-1-hurd-i386-GXKWi8/bwa-0.5.9/bwt_gen'
-gcc -c -g -O2 -g -Wall -O2 -DHAVE_PTHREAD utils.c -o utils.o
-gcc -c -g -O2 -g -Wall -O2 -DHAVE_PTHREAD bwt.c -o bwt.o
-gcc -c -g -O2 -g -Wall -O2 -DHAVE_PTHREAD bwtio.c -o bwtio.o
-gcc -c -g -O2 -g -Wall -O2 -DHAVE_PTHREAD bwtaln.c -o bwtaln.o
-gcc -c -g -O2 -g -Wall -O2 -DHAVE_PTHREAD bwtgap.c -o bwtgap.o
-gcc -c -g -O2 -g -Wall -O2 -DHAVE_PTHREAD is.c -o is.o
-gcc -c -g -O2 -g -Wall -O2 -DHAVE_PTHREAD bntseq.c -o bntseq.o
-gcc -c -g -O2 -g -Wall -O2 -DHAVE_PTHREAD bwtmisc.c -o bwtmisc.o
-gcc -c -g -O2 -g -Wall -O2 -DHAVE_PTHREAD bwtindex.c -o bwtindex.o
-gcc -c -g -O2 -g -Wall -O2 -DHAVE_PTHREAD stdaln.c -o stdaln.o
-gcc -c -g -O2 -g -Wall -O2 -DHAVE_PTHREAD simple_dp.c -o simple_dp.o
-gcc -c -g -O2 -g -Wall -O2 -DHAVE_PTHREAD bwaseqio.c -o bwaseqio.o
-gcc -c -g -O2 -g -Wall -O2 -DHAVE_PTHREAD bwase.c -o bwase.o
-gcc -c -g -O2 -g -Wall -O2 -DHAVE_PTHREAD bwape.c -o bwape.o
-gcc -c -g -O2 -g -Wall -O2 -DHAVE_PTHREAD kstring.c -o kstring.o
-gcc -c -g -O2 -g -Wall -O2 -DHAVE_PTHREAD cs2nt.c -o cs2nt.o
-gcc -c -g -O2 -g -Wall -O2 -DHAVE_PTHREAD bwtsw2_core.c -o bwtsw2_core.o
-gcc -c -g -O2 -g -Wall -O2 -DHAVE_PTHREAD bwtsw2_main.c -o bwtsw2_main.o
-gcc -c -g -O2 -g -Wall -O2 -DHAVE_PTHREAD bwtsw2_aux.c -o bwtsw2_aux.o
-gcc -c -g -O2 -g -Wall -O2 -DHAVE_PTHREAD bwt_lite.c -o bwt_lite.o
-gcc -c -g -O2 -g -Wall -O2 -DHAVE_PTHREAD bwtsw2_chain.c -o bwtsw2_chain.o
-gcc -c -g -O2 -g -Wall -O2 -DHAVE_PTHREAD bamlite.c -o bamlite.o
-gcc -c -g -O2 -g -Wall -O2 -DHAVE_PTHREAD main.c -o main.o
-gcc -g -O2 -g -Wall -O2 -DHAVE_PTHREAD utils.o bwt.o bwtio.o bwtaln.o bwtgap.o is.o bntseq.o bwtmisc.o bwtindex.o stdaln.o simple_dp.o bwaseqio.o bwase.o bwape.o kstring.o cs2nt.o bwtsw2_core.o bwtsw2_main.o bwtsw2_aux.o bwt_lite.o bwtsw2_chain.o bamlite.o main.o -o bwa -lm -lz -lpthread -Lbwt_gen -lbwtgen
-make[1]: Leaving directory `/build/buildd-bwa_0.5.9-1-hurd-i386-GXKWi8/bwa-0.5.9'
-touch debian/stamp-makefile-build
+make[2]: Leaving directory `/build/buildd-bwa_0.5.9-2-hurd-i386-1stCUo/bwa-0.5.9/bwt_gen'
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD utils.c -o utils.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD bwt.c -o bwt.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD bwtio.c -o bwtio.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD bwtaln.c -o bwtaln.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD bwtgap.c -o bwtgap.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD is.c -o is.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD bntseq.c -o bntseq.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD bwtmisc.c -o bwtmisc.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD bwtindex.c -o bwtindex.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD stdaln.c -o stdaln.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD simple_dp.c -o simple_dp.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD bwaseqio.c -o bwaseqio.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD bwase.c -o bwase.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD bwape.c -o bwape.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD kstring.c -o kstring.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD cs2nt.c -o cs2nt.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD bwtsw2_core.c -o bwtsw2_core.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD bwtsw2_main.c -o bwtsw2_main.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD bwtsw2_aux.c -o bwtsw2_aux.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD bwt_lite.c -o bwt_lite.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD bwtsw2_chain.c -o bwtsw2_chain.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD bamlite.c -o bamlite.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD main.c -o main.o
+gcc -g -Wall -O2 -DHAVE_PTHREAD utils.o bwt.o bwtio.o bwtaln.o bwtgap.o is.o bntseq.o bwtmisc.o bwtindex.o stdaln.o simple_dp.o bwaseqio.o bwase.o bwape.o kstring.o cs2nt.o bwtsw2_core.o bwtsw2_main.o bwtsw2_aux.o bwt_lite.o bwtsw2_chain.o bamlite.o main.o -o bwa -lm -lz -lpthread -Lbwt_gen -lbwtgen
+make[1]: Leaving directory `/build/buildd-bwa_0.5.9-2-hurd-i386-1stCUo/bwa-0.5.9'
+ dh_auto_test
/usr/bin/fakeroot debian/rules binary-arch
-DEB_MAKE_CHECK_TARGET unset, not running checks
-test -x debian/rules
-dh_testroot
-dh_prep
-dh_installdirs -A
-mkdir -p "."
-DEB_MAKE_CHECK_TARGET unset, not running checks
-DEB_MAKE_INSTALL_TARGET unset, skipping default makefile.mk common-install target
-Adding cdbs dependencies to debian/bwa.substvars
-dh_installdirs -pbwa
-dh_installdocs -pbwa ./README ./NEWS
-dh_installexamples -pbwa
-dh_installman -pbwa
-dh_installinfo -pbwa
-dh_installmenu -pbwa
-dh_installcron -pbwa
-dh_installinit -pbwa
-dh_installdebconf -pbwa
-dh_installemacsen -pbwa
-dh_installcatalogs -pbwa
-dh_installpam -pbwa
-dh_installlogrotate -pbwa
-dh_installlogcheck -pbwa
-dh_installchangelogs -pbwa ./ChangeLog
-dh_installudev -pbwa
-dh_lintian -pbwa
-dh_install -pbwa
-dh_link -pbwa
-dh_installmime -pbwa
-dh_strip -pbwa
-dh_compress -pbwa
-dh_fixperms -pbwa
-dh_makeshlibs -pbwa
-dh_installdeb -pbwa
-dh_perl -pbwa
-dh_shlibdeps -pbwa
-dh_gencontrol -pbwa
+dh binary-arch
+ dh_testroot -a
+ dh_prep -a
+ dh_installdirs -a
+ dh_auto_install -a
+ dh_install -a
+ dh_installdocs -a
+ dh_installchangelogs -a
+ dh_installexamples -a
+ dh_installman -a
+ dh_installcatalogs -a
+ dh_installcron -a
+ dh_installdebconf -a
+ dh_installemacsen -a
+ dh_installifupdown -a
+ dh_installinfo -a
+ dh_installinit -a
+ dh_installmenu -a
+ dh_installmime -a
+ dh_installmodules -a
+ dh_installlogcheck -a
+ dh_installlogrotate -a
+ dh_installpam -a
+ dh_installppp -a
+ dh_installudev -a
+ dh_installwm -a
+ dh_installxfonts -a
+ dh_bugfiles -a
+ dh_lintian -a
+ dh_gconf -a
+ dh_icons -a
+ dh_perl -a
+ dh_usrlocal -a
+ dh_link -a
+ dh_compress -a
+ dh_fixperms -a
+ dh_strip -a
+ dh_makeshlibs -a
+ dh_shlibdeps -a
+ dh_installdeb -a
+ dh_gencontrol -a
dpkg-gencontrol: warning: package bwa: unused substitution variable ${perl:Depends}
-dh_md5sums -pbwa
-dh_builddeb -pbwa
-dpkg-deb: building package `bwa' in `../bwa_0.5.9-1_hurd-i386.deb'.
- dpkg-genchanges -B -mDebian GNU/Hurd Build Daemon <buildd_hurd-i386-bach at buildd.debian.org> >../bwa_0.5.9-1_hurd-i386.changes
+ dh_md5sums -a
+ dh_builddeb -a
+dpkg-deb: building package `bwa' in `../bwa_0.5.9-2_hurd-i386.deb'.
+ dpkg-genchanges -B -mDebian GNU/Hurd Build Daemon <buildd_hurd-i386-mozart at buildd.debian.org> >../bwa_0.5.9-2_hurd-i386.changes
dpkg-genchanges: arch-specific upload - not including arch-independent packages
dpkg-genchanges: binary-only upload - not including any source code
dpkg-source --after-build bwa-0.5.9
dpkg-buildpackage: binary only upload (no source included)
────────────────────────────────────────────────────────────────────────────────
-Build finished at 20110208-0914
+Build finished at 20110312-0834
-bwa_0.5.9-1_hurd-i386.changes:
+bwa_0.5.9-2_hurd-i386.changes:
Format: 1.8
-Date: Tue, 08 Feb 2011 16:11:12 +0900
+Date: Fri, 11 Mar 2011 22:49:07 +0100
Source: bwa
Binary: bwa
Architecture: hurd-i386
-Version: 0.5.9-1
+Version: 0.5.9-2
Distribution: sid
Urgency: low
-Maintainer: Debian GNU/Hurd Build Daemon <buildd_hurd-i386-bach at buildd.debian.org>
-Changed-By: Charles Plessy <plessy at debian.org>
+Maintainer: Debian GNU/Hurd Build Daemon <buildd_hurd-i386-mozart at buildd.debian.org>
+Changed-By: Andreas Tille <tille at debian.org>
Description:
bwa - Burrows-Wheeler Aligner
Changes:
- bwa (0.5.9-1) unstable; urgency=low
+ bwa (0.5.9-2) unstable; urgency=low
.
- * New usptream release
- - Upstream moved to GitHub (debian/upstream-metadata.yaml).
- - Checked copyright; one file was removed (debian/copyright).
- * Migrated the Debian source package to Git (debian/control).
- * Use Debhelper 8 (debian/control, debian/compat).
+ * Watchfile should not regard rc releases.
+ * Drop cdbs in favour of dh
Checksums-Sha1:
- 4b28106f861e69300a8b4d464954f14b389884bd 139252 bwa_0.5.9-1_hurd-i386.deb
+ e86a4224dde31ddcb08bf87cbdee5bad59aa3ac7 139066 bwa_0.5.9-2_hurd-i386.deb
Checksums-Sha256:
- e5601502543cdb55f9f9ea08d5602bd7d20e911c61d379c1e42a6662a4d24daa 139252 bwa_0.5.9-1_hurd-i386.deb
+ 9285b0ef75df0158d28ba727331487068c45253f45de72cc90fd603cbff0eca1 139066 bwa_0.5.9-2_hurd-i386.deb
Files:
- 87b2a6eae61da3b27224c95fef6326c2 139252 science optional bwa_0.5.9-1_hurd-i386.deb
+ 2bba7a28b0abe4113832d57810cb742c 139066 science optional bwa_0.5.9-2_hurd-i386.deb
┌──────────────────────────────────────────────────────────────────────────────┐
│ Package contents │
└──────────────────────────────────────────────────────────────────────────────┘
-bwa_0.5.9-1_hurd-i386.deb
+bwa_0.5.9-2_hurd-i386.deb
─────────────────────────
new debian package, version 2.0.
- size 139252 bytes: control archive= 984 bytes.
+ size 139066 bytes: control archive= 985 bytes.
787 bytes, 17 lines control
615 bytes, 10 lines md5sums
Package: bwa
- Version: 0.5.9-1
+ Version: 0.5.9-2
Architecture: hurd-i386
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
Installed-Size: 320
@@ -355,25 +305,25 @@ bwa_0.5.9-1_hurd-i386.deb
to around 100 kbp. Both algorithms do gapped alignment. They are usually more
accurate and faster on queries with low error rates.
-drwxr-xr-x root/root 0 2011-02-08 09:13 ./
-drwxr-xr-x root/root 0 2011-02-08 09:13 ./usr/
-drwxr-xr-x root/root 0 2011-02-08 09:13 ./usr/share/
-drwxr-xr-x root/root 0 2011-02-08 09:13 ./usr/share/doc/
-drwxr-xr-x root/root 0 2011-02-08 09:13 ./usr/share/doc/bwa/
+drwxr-xr-x root/root 0 2011-03-12 08:33 ./
+drwxr-xr-x root/root 0 2011-03-12 08:33 ./usr/
+drwxr-xr-x root/root 0 2011-03-12 08:34 ./usr/bin/
+-rwxr-xr-x root/root 202576 2011-03-12 08:34 ./usr/bin/bwa
+drwxr-xr-x root/root 0 2011-03-12 08:33 ./usr/share/
+drwxr-xr-x root/root 0 2011-03-12 08:33 ./usr/share/bwa/
+-rwxr-xr-x root/root 3176 2011-01-25 00:00 ./usr/share/bwa/solid2fastq.pl
+-rwxr-xr-x root/root 616 2011-01-25 00:00 ./usr/share/bwa/qualfa2fq.pl
+drwxr-xr-x root/root 0 2011-03-12 08:33 ./usr/share/doc/
+drwxr-xr-x root/root 0 2011-03-12 08:34 ./usr/share/doc/bwa/
-rw-r--r-- root/root 5857 2011-01-25 00:00 ./usr/share/doc/bwa/NEWS.gz
-rw-r--r-- root/root 634 2011-01-25 00:00 ./usr/share/doc/bwa/README
-rw-r--r-- root/root 2676 2011-02-08 07:09 ./usr/share/doc/bwa/copyright
-rw-r--r-- root/root 17912 2011-01-25 00:00 ./usr/share/doc/bwa/changelog.gz
-rw-r--r-- root/root 17912 2011-01-25 00:00 ./usr/share/doc/bwa/ChangeLog.gz
--rw-r--r-- root/root 881 2011-02-08 07:11 ./usr/share/doc/bwa/changelog.Debian.gz
-drwxr-xr-x root/root 0 2011-02-08 09:13 ./usr/share/man/
-drwxr-xr-x root/root 0 2011-02-08 09:13 ./usr/share/man/man1/
--rw-r--r-- root/root 7554 2011-02-08 09:13 ./usr/share/man/man1/bwa.1.gz
-drwxr-xr-x root/root 0 2011-02-08 09:13 ./usr/share/bwa/
--rwxr-xr-x root/root 3176 2011-01-25 00:00 ./usr/share/bwa/solid2fastq.pl
--rwxr-xr-x root/root 616 2011-01-25 00:00 ./usr/share/bwa/qualfa2fq.pl
-drwxr-xr-x root/root 0 2011-02-08 09:13 ./usr/bin/
--rwxr-xr-x root/root 202576 2011-02-08 09:13 ./usr/bin/bwa
+-rw-r--r-- root/root 957 2011-03-11 21:54 ./usr/share/doc/bwa/changelog.Debian.gz
+drwxr-xr-x root/root 0 2011-03-12 08:33 ./usr/share/man/
+drwxr-xr-x root/root 0 2011-03-12 08:34 ./usr/share/man/man1/
+-rw-r--r-- root/root 7554 2011-03-12 08:33 ./usr/share/man/man1/bwa.1.gz
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -382,12 +332,8 @@ drwxr-xr-x root/root 0 2011-02-08 09:13 ./usr/bin/
Built successfully
────────────────────────────────────────────────────────────────────────────────
-Purging /home/buildd/build/chroot-sid/build/buildd-bwa_0.5.9-1-hurd-i386-GXKWi8
-(Reading database ... 12259 files and directories currently installed.)
-Removing cdbs ...
-Removing zlib1g-dev ...
-Processing triggers for man-db ...
+Purging /home/buildd/build/chroot-sid/build/buildd-bwa_0.5.9-2-hurd-i386-1stCUo
────────────────────────────────────────────────────────────────────────────────
-Finished at 20110208-0914
-Build needed 00:12:15, 2440k disc space
+Finished at 20110312-0834
+Build needed 00:02:53, 2440k disc space
diff --git a/i386.log b/i386.log
index b4e4c46..311b54e 100644
--- a/i386.log
+++ b/i386.log
@@ -1,66 +1,68 @@
-From buildd at biber.debian.org Tue Feb 08 09:00:22 2011
-Return-path: <buildd at biber.debian.org>
-Received: from merikanto.debian.org ([2001:858:2:2:216:35ff:fec4:a49a])
+From buildd at murphy.debian.org Sat Mar 12 07:28:37 2011
+Return-path: <buildd at murphy.debian.org>
+Received: from kokkonen.debian.org ([82.195.75.97])
from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
- CN=merikanto.debian.org,
- EMAIL=hostmaster at merikanto.debian.org (verified)
+ CN=kokkonen.debian.org,
+ EMAIL=hostmaster at kokkonen.debian.org (verified)
by grieg.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
- (Exim 4.69) (envelope-from <buildd at biber.debian.org>)
- id 1PmjQr-0003vA-M9
- for logs at buildd.debian.org; Tue, 08 Feb 2011 09:00:21 +0000
-Received: from biber.debian.org ([2001:648:2ffc:deb:214:22ff:feb2:1268])
+ (Exim 4.69) (envelope-from <buildd at murphy.debian.org>)
+ id 1PyJFc-0000F1-Va
+ for logs at buildd.debian.org; Sat, 12 Mar 2011 07:28:37 +0000
+Received: from murphy.debian.org ([70.103.162.31])
from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
- CN=biber.debian.org, EMAIL=hostmaster at biber.debian.org (verified)
- by merikanto.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
- (Exim 4.69) (envelope-from <buildd at biber.debian.org>)
- id 1PmjQq-0002Mt-4e; Tue, 08 Feb 2011 09:00:20 +0000
-Received: from buildd by biber.debian.org with local (Exim 4.69)
- (envelope-from <buildd at biber.debian.org>)
- id 1PmjQp-00048v-1Y; Tue, 08 Feb 2011 09:00:19 +0000
-From: buildd on biber <buildd at biber.debian.org>
+ CN=murphy.debian.org, EMAIL=hostmaster at murphy.debian.org (verified)
+ by kokkonen.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
+ (Exim 4.69) (envelope-from <buildd at murphy.debian.org>)
+ id 1PyJFb-0004JH-4c; Sat, 12 Mar 2011 07:28:35 +0000
+Received: from buildd by murphy.debian.org with local (Exim 4.69)
+ (envelope-from <buildd at murphy.debian.org>)
+ id 1PyJFY-00011A-Fp; Sat, 12 Mar 2011 07:28:32 +0000
+From: buildd on murphy <buildd at murphy.debian.org>
To: kurt at roeckx.be,logs at buildd.debian.org
-Subject: Log for successful build of bwa_0.5.9-1 on i386 (dist=sid)
+Subject: Log for successful build of bwa_0.5.9-2 on i386 (dist=sid)
Content-Type: text/plain; charset=UTF-8
Content-Transfer-Encoding: 8bit
-Message-Id: <E1PmjQp-00048v-1Y at biber.debian.org>
-Date: Tue, 08 Feb 2011 09:00:19 +0000
+Message-Id: <E1PyJFY-00011A-Fp at murphy.debian.org>
+Date: Sat, 12 Mar 2011 07:28:32 +0000
Delivered-To: logs at buildd.debian.org
-sbuild (Debian sbuild) 0.60.0 (23 Feb 2010) on biber.debian.org
+sbuild (Debian sbuild) 0.60.5 (14 Nov 2010) on murphy.debian.org
╔══════════════════════════════════════════════════════════════════════════════╗
-║ bwa 0.5.9-1 (i386) 08 Feb 2011 08:58 ║
+║ bwa 0.5.9-2 (i386) 12 Mar 2011 07:27 ║
╚══════════════════════════════════════════════════════════════════════════════╝
Package: bwa
-Version: 0.5.9-1
+Version: 0.5.9-2
Architecture: i386
-Chroot Build Dir: /var/lib/schroot/mount/sid-i386-sbuild-946b0c24-fbad-4f1f-8340-f0459f369c02/build/buildd-bwa_0.5.9-1-i386-GDa6n4
-Start Time: 20110208-0858
-Get:1 http://ftp.gr.debian.org unstable Release.gpg [835 B]
-Ign http://ftp.gr.debian.org/debian/ unstable/contrib Translation-en
-Ign http://ftp.gr.debian.org/debian/ unstable/main Translation-en
-Get:2 http://ftp.gr.debian.org unstable Release [104 kB]
-Get:3 http://ftp.gr.debian.org unstable/main Sources [4117 kB]
-Get:4 http://incoming.debian.org unstable Release.gpg [835 B]
-Ign http://incoming.debian.org/debian/ unstable/contrib Translation-en
-Ign http://incoming.debian.org/debian/ unstable/main Translation-en
-Get:5 http://ftp.gr.debian.org unstable/contrib Sources [38.6 kB]
-Get:6 http://incoming.debian.org Release.gpg [835 B]
-Ign http://incoming.debian.org/buildd-unstable/ Translation-en
-Get:7 http://incoming.debian.org unstable Release [104 kB]
-Get:8 http://ftp.gr.debian.org unstable/non-free Sources [83.8 kB]
-Get:9 http://ftp.gr.debian.org unstable/main i386 Packages [6996 kB]
-Get:10 http://ftp.gr.debian.org unstable/contrib i386 Packages [60.6 kB]
-Get:11 http://incoming.debian.org Release [1604 B]
-Get:12 http://incoming.debian.org unstable/main Sources [4119 kB]
-Get:13 http://incoming.debian.org unstable/contrib Sources [38.6 kB]
-Get:14 http://incoming.debian.org unstable/non-free Sources [83.8 kB]
-Get:15 http://incoming.debian.org unstable/main i386 Packages [6996 kB]
-Get:16 http://incoming.debian.org unstable/contrib i386 Packages [60.6 kB]
-Get:17 http://incoming.debian.org Sources [43.1 kB]
-Get:18 http://incoming.debian.org Packages [680 kB]
-Fetched 23.5 MB in 20s (1154 kB/s)
+Chroot Build Dir: /var/lib/schroot/mount/sid-i386-sbuild-edcec140-b833-4ae2-86d5-47d88591ad60/build/buildd-bwa_0.5.9-2-i386-kZdTyK
+Start Time: 20110312-0727
+Hit http://ftp.us.debian.org sid InRelease
+Hit http://incoming.debian.org sid InRelease
+Ign http://incoming.debian.org InRelease
+Hit http://incoming.debian.org Release.gpg
+Hit http://ftp.us.debian.org sid/main Sources/DiffIndex
+Hit http://incoming.debian.org sid/main Sources/DiffIndex
+Hit http://incoming.debian.org sid/contrib Sources/DiffIndex
+Hit http://incoming.debian.org sid/main i386 Packages/DiffIndex
+Hit http://incoming.debian.org sid/contrib i386 Packages/DiffIndex
+Ign http://incoming.debian.org sid/contrib TranslationIndex
+Hit http://incoming.debian.org sid/main TranslationIndex
+Hit http://ftp.us.debian.org sid/contrib Sources/DiffIndex
+Hit http://ftp.us.debian.org sid/main i386 Packages/DiffIndex
+Hit http://ftp.us.debian.org sid/contrib i386 Packages/DiffIndex
+Ign http://ftp.us.debian.org sid/contrib TranslationIndex
+Hit http://ftp.us.debian.org sid/main TranslationIndex
+Hit http://incoming.debian.org Release
+Ign http://incoming.debian.org sid/main 2011-03-12-0214.38.pdiff
+Ign http://incoming.debian.org sid/main i386 2011-03-12-0214.38.pdiff
+Hit http://incoming.debian.org sid/main
+Ign http://ftp.us.debian.org sid/contrib Translation-en
+Hit http://incoming.debian.org sid/main i386
+Hit http://incoming.debian.org Sources
+Hit http://incoming.debian.org Packages
+Ign http://incoming.debian.org sid/contrib Translation-en
+Ign http://incoming.debian.org Translation-en
Reading package lists...
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -82,76 +84,58 @@ Reading state information...
NOTICE: 'bwa' packaging is maintained in the 'Git' version control system at:
git://git.debian.org/git/debian-med/bwa.git
Need to get 119 kB of source archives.
-Get:1 http://incoming.debian.org/buildd-unstable/ bwa 0.5.9-1 (dsc) [1894 B]
-Get:2 http://incoming.debian.org/buildd-unstable/ bwa 0.5.9-1 (tar) [114 kB]
-Get:3 http://incoming.debian.org/buildd-unstable/ bwa 0.5.9-1 (diff) [3651 B]
-Fetched 119 kB in 1s (110 kB/s)
+Get:1 http://incoming.debian.org/buildd-unstable/ bwa 0.5.9-2 (dsc) [1245 B]
+Get:2 http://incoming.debian.org/buildd-unstable/ bwa 0.5.9-2 (tar) [114 kB]
+Get:3 http://incoming.debian.org/buildd-unstable/ bwa 0.5.9-2 (diff) [3828 B]
+Fetched 119 kB in 0s (341 kB/s)
Download complete and in download only mode
Check arch
──────────
** Using build dependencies supplied by package:
-Build-Depends: cdbs, debhelper (>= 8), zlib1g-dev
+Build-Depends: debhelper (>= 8), zlib1g-dev
┌──────────────────────────────────────────────────────────────────────────────┐
│ Install build dependencies (internal resolver) │
└──────────────────────────────────────────────────────────────────────────────┘
Checking for already installed source dependencies...
-cdbs: missing
debhelper: missing
-Using default version 8.1.0
+Using default version 8.1.2
zlib1g-dev: missing
Checking for source dependency conflicts...
-Installing positive dependencies: cdbs debhelper zlib1g-dev
+Installing positive dependencies: debhelper zlib1g-dev
Reading package lists...
Building dependency tree...
Reading state information...
The following extra packages will be installed:
bsdmainutils file gettext gettext-base groff-base html2text intltool-debian
- libcroco3 libglib2.0-0 libmagic1 libpcre3 libunistring0 libxml2 man-db
- po-debconf
+ libcroco3 libglib2.0-0 libmagic1 libpcre3 libpipeline1 libunistring0 libxml2
+ man-db po-debconf
Suggested packages:
- wamerican wordlist whois vacation devscripts doc-base dh-make gettext-doc
- groff less www-browser libmail-box-perl
+ wamerican wordlist whois vacation dh-make gettext-doc groff less www-browser
+ libmail-box-perl
Recommended packages:
- autotools-dev curl wget lynx-cur autopoint libglib2.0-data shared-mime-info
- xml-core libmail-sendmail-perl
+ curl wget lynx-cur autopoint libglib2.0-data shared-mime-info xml-core
+ libmail-sendmail-perl
The following NEW packages will be installed:
- bsdmainutils cdbs debhelper file gettext gettext-base groff-base html2text
- intltool-debian libcroco3 libglib2.0-0 libmagic1 libpcre3 libunistring0
- libxml2 man-db po-debconf zlib1g-dev
-0 upgraded, 18 newly installed, 0 to remove and 3 not upgraded.
-Need to get 9948 kB of archives.
-After this operation, 28.0 MB of additional disk space will be used.
-Get:1 http://ftp.gr.debian.org/debian/ unstable/main bsdmainutils i386 8.2.2 [200 kB]
-Get:2 http://ftp.gr.debian.org/debian/ unstable/main groff-base i386 1.20.1-10 [1128 kB]
-Get:3 http://ftp.gr.debian.org/debian/ unstable/main man-db i386 2.5.7-8 [1240 kB]
-Get:4 http://ftp.gr.debian.org/debian/ unstable/main libmagic1 i386 5.04-5 [234 kB]
-Get:5 http://ftp.gr.debian.org/debian/ unstable/main file i386 5.04-5 [49.1 kB]
-Get:6 http://ftp.gr.debian.org/debian/ unstable/main gettext-base i386 0.18.1.1-3 [130 kB]
-Get:7 http://ftp.gr.debian.org/debian/ unstable/main libpcre3 i386 8.12-1 [255 kB]
-Get:8 http://ftp.gr.debian.org/debian/ unstable/main libxml2 i386 2.7.8.dfsg-2 [827 kB]
-Get:9 http://ftp.gr.debian.org/debian/ unstable/main html2text i386 1.3.2a-15 [101 kB]
-Get:10 http://ftp.gr.debian.org/debian/ unstable/main libglib2.0-0 i386 2.24.2-1 [1029 kB]
-Get:11 http://ftp.gr.debian.org/debian/ unstable/main libcroco3 i386 0.6.2-1 [116 kB]
-Get:12 http://ftp.gr.debian.org/debian/ unstable/main libunistring0 i386 0.9.3-3 [433 kB]
-Get:13 http://ftp.gr.debian.org/debian/ unstable/main gettext i386 0.18.1.1-3 [1973 kB]
-Get:14 http://ftp.gr.debian.org/debian/ unstable/main intltool-debian all 0.35.0+20060710.1 [30.8 kB]
-Get:15 http://ftp.gr.debian.org/debian/ unstable/main po-debconf all 1.0.16+nmu1 [223 kB]
-Get:16 http://ftp.gr.debian.org/debian/ unstable/main debhelper all 8.1.0 [552 kB]
-Get:17 http://ftp.gr.debian.org/debian/ unstable/main cdbs all 0.4.89 [1240 kB]
-Get:18 http://ftp.gr.debian.org/debian/ unstable/main zlib1g-dev i386 1:1.2.3.4.dfsg-3 [186 kB]
+ bsdmainutils debhelper file gettext gettext-base groff-base html2text
+ intltool-debian libcroco3 libglib2.0-0 libmagic1 libpcre3 libpipeline1
+ libunistring0 libxml2 man-db po-debconf zlib1g-dev
debconf: delaying package configuration, since apt-utils is not installed
-Fetched 9948 kB in 0s (11.8 MB/s)
+0 upgraded, 18 newly installed, 0 to remove and 8 not upgraded.
+Need to get 0 B/8943 kB of archives.
+After this operation, 26.8 MB of additional disk space will be used.
Selecting previously deselected package bsdmainutils.
-(Reading database ... 10198 files and directories currently installed.)
+(Reading database ... 10377 files and directories currently installed.)
Unpacking bsdmainutils (from .../bsdmainutils_8.2.2_i386.deb) ...
Selecting previously deselected package groff-base.
-Unpacking groff-base (from .../groff-base_1.20.1-10_i386.deb) ...
+Unpacking groff-base (from .../groff-base_1.21-4_i386.deb) ...
+Selecting previously deselected package libpipeline1.
+Unpacking libpipeline1 (from .../libpipeline1_1.1.0-1_i386.deb) ...
Selecting previously deselected package man-db.
-Unpacking man-db (from .../man-db_2.5.7-8_i386.deb) ...
+Unpacking man-db (from .../man-db_2.5.9-4_i386.deb) ...
Selecting previously deselected package libmagic1.
Unpacking libmagic1 (from .../libmagic1_5.04-5_i386.deb) ...
Selecting previously deselected package file.
@@ -159,13 +143,13 @@ Unpacking file (from .../archives/file_5.04-5_i386.deb) ...
Selecting previously deselected package gettext-base.
Unpacking gettext-base (from .../gettext-base_0.18.1.1-3_i386.deb) ...
Selecting previously deselected package libpcre3.
-Unpacking libpcre3 (from .../libpcre3_8.12-1_i386.deb) ...
+Unpacking libpcre3 (from .../libpcre3_8.12-3_i386.deb) ...
Selecting previously deselected package libxml2.
Unpacking libxml2 (from .../libxml2_2.7.8.dfsg-2_i386.deb) ...
Selecting previously deselected package html2text.
Unpacking html2text (from .../html2text_1.3.2a-15_i386.deb) ...
Selecting previously deselected package libglib2.0-0.
-Unpacking libglib2.0-0 (from .../libglib2.0-0_2.24.2-1_i386.deb) ...
+Unpacking libglib2.0-0 (from .../libglib2.0-0_2.28.1-1+b1_i386.deb) ...
Selecting previously deselected package libcroco3.
Unpacking libcroco3 (from .../libcroco3_0.6.2-1_i386.deb) ...
Selecting previously deselected package libunistring0.
@@ -177,37 +161,36 @@ Unpacking intltool-debian (from .../intltool-debian_0.35.0+20060710.1_all.deb) .
Selecting previously deselected package po-debconf.
Unpacking po-debconf (from .../po-debconf_1.0.16+nmu1_all.deb) ...
Selecting previously deselected package debhelper.
-Unpacking debhelper (from .../debhelper_8.1.0_all.deb) ...
-Selecting previously deselected package cdbs.
-Unpacking cdbs (from .../archives/cdbs_0.4.89_all.deb) ...
+Unpacking debhelper (from .../debhelper_8.1.2_all.deb) ...
Selecting previously deselected package zlib1g-dev.
Unpacking zlib1g-dev (from .../zlib1g-dev_1%3a1.2.3.4.dfsg-3_i386.deb) ...
Setting up bsdmainutils (8.2.2) ...
update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode.
update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode.
-Setting up groff-base (1.20.1-10) ...
-Setting up man-db (2.5.7-8) ...
+Setting up groff-base (1.21-4) ...
+Setting up libpipeline1 (1.1.0-1) ...
+Setting up man-db (2.5.9-4) ...
Building database of manual pages ...
Setting up libmagic1 (5.04-5) ...
Setting up file (5.04-5) ...
Setting up gettext-base (0.18.1.1-3) ...
-Setting up libpcre3 (8.12-1) ...
+Setting up libpcre3 (8.12-3) ...
Setting up libxml2 (2.7.8.dfsg-2) ...
Setting up html2text (1.3.2a-15) ...
-Setting up libglib2.0-0 (2.24.2-1) ...
+Setting up libglib2.0-0 (2.28.1-1+b1) ...
+No schema files found: doing nothing.
Setting up libcroco3 (0.6.2-1) ...
Setting up libunistring0 (0.9.3-3) ...
Setting up gettext (0.18.1.1-3) ...
Setting up intltool-debian (0.35.0+20060710.1) ...
Setting up po-debconf (1.0.16+nmu1) ...
-Setting up debhelper (8.1.0) ...
-Setting up cdbs (0.4.89) ...
+Setting up debhelper (8.1.2) ...
Setting up zlib1g-dev (1:1.2.3.4.dfsg-3) ...
Removing negative dependencies:
Checking correctness of source dependencies...
-Kernel: Linux 2.6.26-2-amd64 i386 (x86_64)
-Toolchain package versions: libc6-dev_2.11.2-11 dpkg-dev_1.15.8.10 linux-libc-dev_2.6.32-30 gcc-4.4_4.4.5-10 g++-4.4_4.4.5-10 binutils_2.20.1-16 libstdc++6-4.4-dev_4.4.5-10 libstdc++6_4.4.5-10
-Package versions: apt_0.8.10.3 base-files_6.0 base-passwd_3.5.22 bash_4.1-3 binutils_2.20.1-16 bsdmainutils_8.2.2 bsdutils_1:2.17.2-9 build-essential_11.5 bzip2_1.0.5-6 cdbs_0.4.89 coreutils_8.5-1 cpp_4:4.4.5-2 cpp-4.4_4.4.5-10 dash_0.5.5.1-7.4 debconf_1.5.38 debconf-i18n_1.5.38 debfoster_2.7-1.1 debhelper_8.1.0 debian-archive-keyring_2010.08.28 debianutils_3.4.3 diffutils_1:3.0-1 dpkg_1.15.8.10 dpkg-dev_1.15.8.10 e2fslibs_1.41.12-2 e2fsprogs_1.41.12-2 fakeroot_1.14.5-1 file_5.04-5 findutils_4.4.2-1+b1 g++_4:4.4.5-2 g++-4.4_4.4.5-10 gcc_4:4.4.5-2 gcc-4.4_4.4.5-10 gcc-4.4-base_4.4.5-10 gettext_0.18.1.1-3 gettext-base_0.18.1.1-3 gnupg_1.4.10-4 gpgv_1.4.10-4 grep_2.6.3-3 groff-base_1.20.1-10 gzip_1.3.12-9 hostname_3.05 html2text_1.3.2a-15 initscripts_2.88dsf-13.1 insserv_1.14.0-2 intltool-debian_0.35.0+20060710.1 libacl1_2.2.49-4 libattr1_1:2.4.44-2 libblkid1_2.17.2-9 libbz2-1.0_1.0.5-6 libc-bin_2.11.2-11 libc-dev-bin_2.11.2-11 libc6_2.11.2-11 libc6-dev_2.11.2-11 libcomerr2_1.41.12-2 libcroco3_0.6.2-1 libdb4.7_4.7.25-12 libdb4.8_4.8.30-4 libdpkg-perl_1.15.8.10 libgc1c2_1:6.8-1.2 libgcc1_1:4.4.5-10 libgdbm3_1.8.3-9 libglib2.0-0_2.24.2-1 libgmp3c2_2:4.3.2+dfsg-1 libgomp1_4.4.5-10 liblocale-gettext-perl_1.05-6 liblzma2_5.0.0-2 libmagic1_5.04-5 libmpfr4_3.0.0-2 libncurses5_5.7+20100313-5 libpam-modules_1.1.1-6.1 libpam-runtime_1.1.1-6.1 libpam0g_1.1.1-6.1 libpcre3_8.12-1 libreadline6_6.1-3 libselinux1_2.0.96-1 libsepol1_2.0.42-1 libslang2_2.2.2-4 libss2_1.41.12-2 libstdc++6_4.4.5-10 libstdc++6-4.4-dev_4.4.5-10 libtext-charwidth-perl_0.04-6 libtext-iconv-perl_1.7-2 libtext-wrapi18n-perl_0.06-7 libtimedate-perl_1.2000-1 libunistring0_0.9.3-3 libusb-0.1-4_2:0.1.12-16 libuuid1_2.17.2-9 libxml2_2.7.8.dfsg-2 linux-libc-dev_2.6.32-30 login_1:4.1.4.2+svn3283-2 lsb-base_3.2-27 make_3.81-8 man-db_2.5.7-8 mawk_1.3.3-15 mount_2.17.2-9 ncurses-base_5.7+20100313-5 ncurses-bin_5.7+20100313-5 passwd_1:4.1.4.2+svn3283-2 patch_2.6-3 perl_5.10.1-17 perl-base_5.10.1-17 perl-modules_5.10.1-17 po-debconf_1.0.16+nmu1 readline-common_6.1-3 sed_4.2.1-8 sensible-utils_0.0.6 sudo_1.7.4p4-6 sysv-rc_2.88dsf-13.1 sysvinit_2.88dsf-13.1 sysvinit-utils_2.88dsf-13.1 tar_1.25-3 tzdata_2011a-1 util-linux_2.17.2-9 xz-utils_5.0.0-2 zlib1g_1:1.2.3.4.dfsg-3 zlib1g-dev_1:1.2.3.4.dfsg-3
+Kernel: Linux 2.6.32.32-dsa-ia32 i386 (i686)
+Toolchain package versions: libc6-dev_2.11.2-11 dpkg-dev_1.15.8.10 linux-libc-dev_2.6.37-2 gcc-4.5_4.5.2-5 g++-4.5_4.5.2-5 binutils_2.21.0.20110302-1 libstdc++6-4.5-dev_4.5.2-5 libstdc++6_4.5.2-5
+Package versions: apt_0.8.11.5 base-files_6.1 base-passwd_3.5.22 bash_4.1-3 binutils_2.21.0.20110302-1 bsdmainutils_8.2.2 bsdutils_1:2.17.2-9.1 build-essential_11.5 bzip2_1.0.5-6 coreutils_8.5-1 cpp_4:4.5.2-2 cpp-4.5_4.5.2-5 dash_0.5.5.1-7.4 debconf_1.5.38 debconf-i18n_1.5.38 debfoster_2.7-1.1 debhelper_8.1.2 debian-archive-keyring_2010.08.28 debianutils_3.4.4 diffutils_1:3.0-1 dpkg_1.15.8.10 dpkg-dev_1.15.8.10 e2fslibs_1.41.12-2 e2fsprogs_1.41.12-2 fakeroot_1.14.5-2 file_5.04-5 findutils_4.4.2-1+b1 g++_4:4.5.2-1 g++-4.5_4.5.2-5 gcc_4:4.5.2-2 gcc-4.5_4.5.2-5 gcc-4.5-base_4.5.2-5 gettext_0.18.1.1-3 gettext-base_0.18.1.1-3 gnupg_1.4.11-3 gpgv_1.4.11-3 grep_2.6.3-3 groff-base_1.21-4 gzip_1.3.12-9 hostname_3.05 html2text_1.3.2a-15 initscripts_2.88dsf-13.1 insserv_1.14.0-2 intltool-debian_0.35.0+20060710.1 libacl1_2.2.49-4 libattr1_1:2.4.44-2 libblkid1_2.17.2-9.1 libbz2-1.0_1.0.5-6 libc-bin_2.11.2-11 libc-dev-bin_2.11.2-11 libc6_2.11.2-11 libc6-dev_2.11.2-11 libcloog-ppl0_0.15.9-2 libcomerr2_1.41.12-2 libcroco3_0.6.2-1 libdb4.7_4.7.25-12 libdb4.8_4.8.30-5 libdpkg-perl_1.15.8.10 libelfg0_0.8.13-1 libgc1c2_1:7.1-7 libgcc1_1:4.5.2-5 libgdbm3_1.8.3-9 libglib2.0-0_2.28.1-1+b1 libgmp10_2:5.0.1+dfsg-6 libgmp3c2_2:4.3.2+dfsg-1 libgmpxx4ldbl_2:5.0.1+dfsg-6 libgomp1_4.5.2-5 liblocale-gettext-perl_1.05-6 liblzma2_5.0.0-2 libmagic1_5.04-5 libmpc2_0.9-1 libmpfr4_3.0.0-7 libncurses5_5.8+20110307-1 libpam-modules_1.1.2-2 libpam-runtime_1.1.2-2 libpam0g_1.1.2-2 libpcre3_8.12-3 libpipeline1_1.1.0-1 libppl-c2_0.10.2-9 libppl7_0.10.2-9 libreadline6_6.1-3 libselinux1_2.0.96-1 libsepol1_2.0.42-1 libslang2_2.2.2-4 libss2_1.41.12-2 libstdc++6_4.5.2-5 libstdc++6-4.5-dev_4.5.2-5 libtext-charwidth-perl_0.04-6 libtext-iconv-perl_1.7-2 libtext-wrapi18n-perl_0.06-7 libtimedate-perl_1.2000-1 libunistring0_0.9.3-3 libusb-0.1-4_2:0.1.12-17 libuuid1_2.17.2-9.1 libxml2_2.7.8.dfsg-2 linux-libc-dev_2.6.37-2 login_1:4.1.4.2+svn3283-3 lsb-base_3.2-27 make_3.81-8 man-db_2.5.9-4 mawk_1.3.3-15 mount_2.17.2-9.1 ncurses-base_5.8-1 ncurses-bin_5.8+20110307-1 passwd_1:4.1.4.2+svn3283-3 patch_2.6.1-1 perl_5.10.1-17 perl-base_5.10.1-17 perl-modules_5.10.1-17 po-debconf_1.0.16+nmu1 readline-common_6.1-3 sed_4.2.1-9 sensible-utils_0.0.6 sudo_1.7.4p6-1 sysv-rc_2.88dsf-13.1 sysvinit_2.88dsf-13.1 sysvinit-utils_2.88dsf-13.1 tar_1.25-3 tzdata_2011c-1 util-linux_2.17.2-9.1 xz-utils_5.0.0-2 zlib1g_1:1.2.3.4.dfsg-3 zlib1g-dev_1:1.2.3.4.dfsg-3
┌──────────────────────────────────────────────────────────────────────────────┐
│ Build │
@@ -219,12 +202,12 @@ Unpack source
dpkg-source: warning: -sn is not a valid option for Dpkg::Source::Package::V3::quilt
gpgv: keyblock resource `/home/buildd/.gnupg/trustedkeys.gpg': file open error
-gpgv: Signature made Tue Feb 8 07:20:43 2011 UTC using RSA key ID 2295D502
+gpgv: Signature made Fri Mar 11 21:59:41 2011 UTC using DSA key ID C09FD35A
gpgv: Can't check signature: public key not found
-dpkg-source: warning: failed to verify signature on ./bwa_0.5.9-1.dsc
+dpkg-source: warning: failed to verify signature on ./bwa_0.5.9-2.dsc
dpkg-source: info: extracting bwa in bwa-0.5.9
dpkg-source: info: unpacking bwa_0.5.9.orig.tar.bz2
-dpkg-source: info: unpacking bwa_0.5.9-1.debian.tar.gz
+dpkg-source: info: unpacking bwa_0.5.9-2.debian.tar.gz
Check disc space
────────────────
@@ -239,154 +222,155 @@ dpkg-buildpackage: export CXXFLAGS from dpkg-buildflags (origin: vendor): -g -O2
dpkg-buildpackage: export FFLAGS from dpkg-buildflags (origin: vendor): -g -O2
dpkg-buildpackage: export LDFLAGS from dpkg-buildflags (origin: vendor):
dpkg-buildpackage: source package bwa
-dpkg-buildpackage: source version 0.5.9-1
+dpkg-buildpackage: source version 0.5.9-2
dpkg-source --before-build bwa-0.5.9
dpkg-buildpackage: host architecture i386
/usr/bin/fakeroot debian/rules clean
-test -x debian/rules
-dh_testroot
-rm -f debian/stamp-makefile-build debian/stamp-makefile-install
-/usr/bin/make -C . CFLAGS="-g -O2 -g -Wall -O2" CXXFLAGS="-g -O2 -g -Wall -O2" CPPFLAGS="" LDFLAGS="" -k clean
-make[1]: Entering directory `/build/buildd-bwa_0.5.9-1-i386-GDa6n4/bwa-0.5.9'
-make[2]: Entering directory `/build/buildd-bwa_0.5.9-1-i386-GDa6n4/bwa-0.5.9'
+dh clean
+ dh_testdir
+ dh_auto_clean
+make[1]: Entering directory `/build/buildd-bwa_0.5.9-2-i386-kZdTyK/bwa-0.5.9'
+make[2]: Entering directory `/build/buildd-bwa_0.5.9-2-i386-kZdTyK/bwa-0.5.9'
rm -f gmon.out *.o a.out bwa *~ *.a
-make[2]: Leaving directory `/build/buildd-bwa_0.5.9-1-i386-GDa6n4/bwa-0.5.9'
-make[2]: Entering directory `/build/buildd-bwa_0.5.9-1-i386-GDa6n4/bwa-0.5.9/bwt_gen'
+make[2]: Leaving directory `/build/buildd-bwa_0.5.9-2-i386-kZdTyK/bwa-0.5.9'
+make[2]: Entering directory `/build/buildd-bwa_0.5.9-2-i386-kZdTyK/bwa-0.5.9/bwt_gen'
rm -f gmon.out *.o a.out *~ *.a
-make[2]: Leaving directory `/build/buildd-bwa_0.5.9-1-i386-GDa6n4/bwa-0.5.9/bwt_gen'
-make[1]: Leaving directory `/build/buildd-bwa_0.5.9-1-i386-GDa6n4/bwa-0.5.9'
-dh_clean
+make[2]: Leaving directory `/build/buildd-bwa_0.5.9-2-i386-kZdTyK/bwa-0.5.9/bwt_gen'
+make[1]: Leaving directory `/build/buildd-bwa_0.5.9-2-i386-kZdTyK/bwa-0.5.9'
+ dh_clean
debian/rules build
-test -x debian/rules
-mkdir -p "."
-/usr/bin/make -C . CFLAGS="-g -O2 -g -Wall -O2" CXXFLAGS="-g -O2 -g -Wall -O2" CPPFLAGS="" LDFLAGS=""
-make[1]: Entering directory `/build/buildd-bwa_0.5.9-1-i386-GDa6n4/bwa-0.5.9'
-make[2]: Entering directory `/build/buildd-bwa_0.5.9-1-i386-GDa6n4/bwa-0.5.9'
+dh build
+ dh_testdir
+ dh_auto_configure
+ dh_auto_build
+make[1]: Entering directory `/build/buildd-bwa_0.5.9-2-i386-kZdTyK/bwa-0.5.9'
+make[2]: Entering directory `/build/buildd-bwa_0.5.9-2-i386-kZdTyK/bwa-0.5.9'
make[2]: Nothing to be done for `lib'.
-make[2]: Leaving directory `/build/buildd-bwa_0.5.9-1-i386-GDa6n4/bwa-0.5.9'
-make[2]: Entering directory `/build/buildd-bwa_0.5.9-1-i386-GDa6n4/bwa-0.5.9/bwt_gen'
-gcc -c -g -O2 -g -Wall -O2 -DHAVE_PTHREAD bwt_gen.c -o bwt_gen.o
-gcc -c -g -O2 -g -Wall -O2 -DHAVE_PTHREAD QSufSort.c -o QSufSort.o
+make[2]: Leaving directory `/build/buildd-bwa_0.5.9-2-i386-kZdTyK/bwa-0.5.9'
+make[2]: Entering directory `/build/buildd-bwa_0.5.9-2-i386-kZdTyK/bwa-0.5.9/bwt_gen'
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD bwt_gen.c -o bwt_gen.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD QSufSort.c -o QSufSort.o
ar -cru libbwtgen.a bwt_gen.o QSufSort.o
-make[2]: Leaving directory `/build/buildd-bwa_0.5.9-1-i386-GDa6n4/bwa-0.5.9/bwt_gen'
-gcc -c -g -O2 -g -Wall -O2 -DHAVE_PTHREAD utils.c -o utils.o
-gcc -c -g -O2 -g -Wall -O2 -DHAVE_PTHREAD bwt.c -o bwt.o
-gcc -c -g -O2 -g -Wall -O2 -DHAVE_PTHREAD bwtio.c -o bwtio.o
-gcc -c -g -O2 -g -Wall -O2 -DHAVE_PTHREAD bwtaln.c -o bwtaln.o
-gcc -c -g -O2 -g -Wall -O2 -DHAVE_PTHREAD bwtgap.c -o bwtgap.o
-gcc -c -g -O2 -g -Wall -O2 -DHAVE_PTHREAD is.c -o is.o
-gcc -c -g -O2 -g -Wall -O2 -DHAVE_PTHREAD bntseq.c -o bntseq.o
-gcc -c -g -O2 -g -Wall -O2 -DHAVE_PTHREAD bwtmisc.c -o bwtmisc.o
-gcc -c -g -O2 -g -Wall -O2 -DHAVE_PTHREAD bwtindex.c -o bwtindex.o
-gcc -c -g -O2 -g -Wall -O2 -DHAVE_PTHREAD stdaln.c -o stdaln.o
-gcc -c -g -O2 -g -Wall -O2 -DHAVE_PTHREAD simple_dp.c -o simple_dp.o
-gcc -c -g -O2 -g -Wall -O2 -DHAVE_PTHREAD bwaseqio.c -o bwaseqio.o
-gcc -c -g -O2 -g -Wall -O2 -DHAVE_PTHREAD bwase.c -o bwase.o
-gcc -c -g -O2 -g -Wall -O2 -DHAVE_PTHREAD bwape.c -o bwape.o
-gcc -c -g -O2 -g -Wall -O2 -DHAVE_PTHREAD kstring.c -o kstring.o
-gcc -c -g -O2 -g -Wall -O2 -DHAVE_PTHREAD cs2nt.c -o cs2nt.o
-gcc -c -g -O2 -g -Wall -O2 -DHAVE_PTHREAD bwtsw2_core.c -o bwtsw2_core.o
-gcc -c -g -O2 -g -Wall -O2 -DHAVE_PTHREAD bwtsw2_main.c -o bwtsw2_main.o
-gcc -c -g -O2 -g -Wall -O2 -DHAVE_PTHREAD bwtsw2_aux.c -o bwtsw2_aux.o
-gcc -c -g -O2 -g -Wall -O2 -DHAVE_PTHREAD bwt_lite.c -o bwt_lite.o
-gcc -c -g -O2 -g -Wall -O2 -DHAVE_PTHREAD bwtsw2_chain.c -o bwtsw2_chain.o
-gcc -c -g -O2 -g -Wall -O2 -DHAVE_PTHREAD bamlite.c -o bamlite.o
-gcc -c -g -O2 -g -Wall -O2 -DHAVE_PTHREAD main.c -o main.o
-gcc -g -O2 -g -Wall -O2 -DHAVE_PTHREAD utils.o bwt.o bwtio.o bwtaln.o bwtgap.o is.o bntseq.o bwtmisc.o bwtindex.o stdaln.o simple_dp.o bwaseqio.o bwase.o bwape.o kstring.o cs2nt.o bwtsw2_core.o bwtsw2_main.o bwtsw2_aux.o bwt_lite.o bwtsw2_chain.o bamlite.o main.o -o bwa -lm -lz -lpthread -Lbwt_gen -lbwtgen
-make[1]: Leaving directory `/build/buildd-bwa_0.5.9-1-i386-GDa6n4/bwa-0.5.9'
-touch debian/stamp-makefile-build
-DEB_MAKE_CHECK_TARGET unset, not running checks
+make[2]: Leaving directory `/build/buildd-bwa_0.5.9-2-i386-kZdTyK/bwa-0.5.9/bwt_gen'
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD utils.c -o utils.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD bwt.c -o bwt.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD bwtio.c -o bwtio.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD bwtaln.c -o bwtaln.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD bwtgap.c -o bwtgap.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD is.c -o is.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD bntseq.c -o bntseq.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD bwtmisc.c -o bwtmisc.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD bwtindex.c -o bwtindex.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD stdaln.c -o stdaln.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD simple_dp.c -o simple_dp.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD bwaseqio.c -o bwaseqio.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD bwase.c -o bwase.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD bwape.c -o bwape.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD kstring.c -o kstring.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD cs2nt.c -o cs2nt.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD bwtsw2_core.c -o bwtsw2_core.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD bwtsw2_main.c -o bwtsw2_main.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD bwtsw2_aux.c -o bwtsw2_aux.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD bwt_lite.c -o bwt_lite.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD bwtsw2_chain.c -o bwtsw2_chain.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD bamlite.c -o bamlite.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD main.c -o main.o
+gcc -g -Wall -O2 -DHAVE_PTHREAD utils.o bwt.o bwtio.o bwtaln.o bwtgap.o is.o bntseq.o bwtmisc.o bwtindex.o stdaln.o simple_dp.o bwaseqio.o bwase.o bwape.o kstring.o cs2nt.o bwtsw2_core.o bwtsw2_main.o bwtsw2_aux.o bwt_lite.o bwtsw2_chain.o bamlite.o main.o -o bwa -lm -lz -lpthread -Lbwt_gen -lbwtgen
+make[1]: Leaving directory `/build/buildd-bwa_0.5.9-2-i386-kZdTyK/bwa-0.5.9'
+ dh_auto_test
/usr/bin/fakeroot debian/rules binary-arch
-test -x debian/rules
-dh_testroot
-dh_prep
-dh_installdirs -A
-mkdir -p "."
-DEB_MAKE_CHECK_TARGET unset, not running checks
-DEB_MAKE_INSTALL_TARGET unset, skipping default makefile.mk common-install target
-Adding cdbs dependencies to debian/bwa.substvars
-dh_installdirs -pbwa
-dh_installdocs -pbwa ./README ./NEWS
-dh_installexamples -pbwa
-dh_installman -pbwa
-dh_installinfo -pbwa
-dh_installmenu -pbwa
-dh_installcron -pbwa
-dh_installinit -pbwa
-dh_installdebconf -pbwa
-dh_installemacsen -pbwa
-dh_installcatalogs -pbwa
-dh_installpam -pbwa
-dh_installlogrotate -pbwa
-dh_installlogcheck -pbwa
-dh_installchangelogs -pbwa ./ChangeLog
-dh_installudev -pbwa
-dh_lintian -pbwa
-dh_install -pbwa
-dh_link -pbwa
-dh_installmime -pbwa
-dh_strip -pbwa
-dh_compress -pbwa
-dh_fixperms -pbwa
-dh_makeshlibs -pbwa
-dh_installdeb -pbwa
-dh_perl -pbwa
-dh_shlibdeps -pbwa
-dh_gencontrol -pbwa
+dh binary-arch
+ dh_testroot -a
+ dh_prep -a
+ dh_installdirs -a
+ dh_auto_install -a
+ dh_install -a
+ dh_installdocs -a
+ dh_installchangelogs -a
+ dh_installexamples -a
+ dh_installman -a
+ dh_installcatalogs -a
+ dh_installcron -a
+ dh_installdebconf -a
+ dh_installemacsen -a
+ dh_installifupdown -a
+ dh_installinfo -a
+ dh_installinit -a
+ dh_installmenu -a
+ dh_installmime -a
+ dh_installmodules -a
+ dh_installlogcheck -a
+ dh_installlogrotate -a
+ dh_installpam -a
+ dh_installppp -a
+ dh_installudev -a
+ dh_installwm -a
+ dh_installxfonts -a
+ dh_bugfiles -a
+ dh_lintian -a
+ dh_gconf -a
+ dh_icons -a
+ dh_perl -a
+ dh_usrlocal -a
+ dh_link -a
+ dh_compress -a
+ dh_fixperms -a
+ dh_strip -a
+ dh_makeshlibs -a
+ dh_shlibdeps -a
+ dh_installdeb -a
+ dh_gencontrol -a
dpkg-gencontrol: warning: package bwa: unused substitution variable ${perl:Depends}
-dh_md5sums -pbwa
-dh_builddeb -pbwa
-dpkg-deb: building package `bwa' in `../bwa_0.5.9-1_i386.deb'.
- dpkg-genchanges -B -mi386 Build Daemon <buildd_i386-biber at buildd.debian.org> >../bwa_0.5.9-1_i386.changes
+ dh_md5sums -a
+ dh_builddeb -a
+dpkg-deb: building package `bwa' in `../bwa_0.5.9-2_i386.deb'.
+ dpkg-genchanges -B -mi386 Build Daemon (murphy) <buildd_i386-murphy at buildd.debian.org> >../bwa_0.5.9-2_i386.changes
dpkg-genchanges: arch-specific upload - not including arch-independent packages
dpkg-genchanges: binary-only upload - not including any source code
dpkg-source --after-build bwa-0.5.9
dpkg-buildpackage: binary only upload (no source included)
────────────────────────────────────────────────────────────────────────────────
-Build finished at 20110208-0900
+Build finished at 20110312-0728
-bwa_0.5.9-1_i386.changes:
+bwa_0.5.9-2_i386.changes:
Format: 1.8
-Date: Tue, 08 Feb 2011 16:11:12 +0900
+Date: Fri, 11 Mar 2011 22:49:07 +0100
Source: bwa
Binary: bwa
Architecture: i386
-Version: 0.5.9-1
+Version: 0.5.9-2
Distribution: sid
Urgency: low
-Maintainer: i386 Build Daemon <buildd_i386-biber at buildd.debian.org>
-Changed-By: Charles Plessy <plessy at debian.org>
+Maintainer: i386 Build Daemon (murphy) <buildd_i386-murphy at buildd.debian.org>
+Changed-By: Andreas Tille <tille at debian.org>
Description:
bwa - Burrows-Wheeler Aligner
Changes:
- bwa (0.5.9-1) unstable; urgency=low
+ bwa (0.5.9-2) unstable; urgency=low
.
- * New usptream release
- - Upstream moved to GitHub (debian/upstream-metadata.yaml).
- - Checked copyright; one file was removed (debian/copyright).
- * Migrated the Debian source package to Git (debian/control).
- * Use Debhelper 8 (debian/control, debian/compat).
+ * Watchfile should not regard rc releases.
+ * Drop cdbs in favour of dh
Checksums-Sha1:
- 7cc69d2a2f59bf0d52dc0a0eb8b304847cd07705 139584 bwa_0.5.9-1_i386.deb
+ 3508c8b5c7c89031e42287c2892fdce76018d799 138784 bwa_0.5.9-2_i386.deb
Checksums-Sha256:
- 488bec898fba7878d5302659f86f8906b9bc69584d6aed850de49ab115611a77 139584 bwa_0.5.9-1_i386.deb
+ a172dcbfdc80eb05dc041fa6c1cea574b806497774ab2a81e3ce3c53d1863a97 138784 bwa_0.5.9-2_i386.deb
Files:
- 73a8c24f0fa3aff8b8666460637bff08 139584 science optional bwa_0.5.9-1_i386.deb
+ e7ef8294aeda2ad987b4d1ddec9803e4 138784 science optional bwa_0.5.9-2_i386.deb
┌──────────────────────────────────────────────────────────────────────────────┐
│ Package contents │
└──────────────────────────────────────────────────────────────────────────────┘
-bwa_0.5.9-1_i386.deb
+bwa_0.5.9-2_i386.deb
────────────────────
new debian package, version 2.0.
- size 139584 bytes: control archive= 975 bytes.
+ size 138784 bytes: control archive= 972 bytes.
773 bytes, 17 lines control
615 bytes, 10 lines md5sums
Package: bwa
- Version: 0.5.9-1
+ Version: 0.5.9-2
Architecture: i386
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
Installed-Size: 320
@@ -403,25 +387,25 @@ bwa_0.5.9-1_i386.deb
to around 100 kbp. Both algorithms do gapped alignment. They are usually more
accurate and faster on queries with low error rates.
-drwxr-xr-x root/root 0 2011-02-08 09:00 ./
-drwxr-xr-x root/root 0 2011-02-08 09:00 ./usr/
-drwxr-xr-x root/root 0 2011-02-08 09:00 ./usr/bin/
--rwxr-xr-x root/root 202576 2011-02-08 09:00 ./usr/bin/bwa
-drwxr-xr-x root/root 0 2011-02-08 09:00 ./usr/share/
-drwxr-xr-x root/root 0 2011-02-08 09:00 ./usr/share/doc/
-drwxr-xr-x root/root 0 2011-02-08 09:00 ./usr/share/doc/bwa/
+drwxr-xr-x root/root 0 2011-03-12 07:28 ./
+drwxr-xr-x root/root 0 2011-03-12 07:28 ./usr/
+drwxr-xr-x root/root 0 2011-03-12 07:28 ./usr/bin/
+-rwxr-xr-x root/root 202800 2011-03-12 07:28 ./usr/bin/bwa
+drwxr-xr-x root/root 0 2011-03-12 07:28 ./usr/share/
+drwxr-xr-x root/root 0 2011-03-12 07:28 ./usr/share/man/
+drwxr-xr-x root/root 0 2011-03-12 07:28 ./usr/share/man/man1/
+-rw-r--r-- root/root 7554 2011-03-12 07:28 ./usr/share/man/man1/bwa.1.gz
+drwxr-xr-x root/root 0 2011-03-12 07:28 ./usr/share/bwa/
+-rwxr-xr-x root/root 3176 2011-01-25 00:00 ./usr/share/bwa/solid2fastq.pl
+-rwxr-xr-x root/root 616 2011-01-25 00:00 ./usr/share/bwa/qualfa2fq.pl
+drwxr-xr-x root/root 0 2011-03-12 07:28 ./usr/share/doc/
+drwxr-xr-x root/root 0 2011-03-12 07:28 ./usr/share/doc/bwa/
+-rw-r--r-- root/root 957 2011-03-11 21:54 ./usr/share/doc/bwa/changelog.Debian.gz
+-rw-r--r-- root/root 2676 2011-02-08 07:09 ./usr/share/doc/bwa/copyright
+-rw-r--r-- root/root 634 2011-01-25 00:00 ./usr/share/doc/bwa/README
+-rw-r--r-- root/root 5857 2011-01-25 00:00 ./usr/share/doc/bwa/NEWS.gz
-rw-r--r-- root/root 17912 2011-01-25 00:00 ./usr/share/doc/bwa/changelog.gz
-rw-r--r-- root/root 17912 2011-01-25 00:00 ./usr/share/doc/bwa/ChangeLog.gz
--rw-r--r-- root/root 5857 2011-01-25 00:00 ./usr/share/doc/bwa/NEWS.gz
--rw-r--r-- root/root 881 2011-02-08 07:11 ./usr/share/doc/bwa/changelog.Debian.gz
--rw-r--r-- root/root 634 2011-01-25 00:00 ./usr/share/doc/bwa/README
--rw-r--r-- root/root 2676 2011-02-08 07:09 ./usr/share/doc/bwa/copyright
-drwxr-xr-x root/root 0 2011-02-08 09:00 ./usr/share/man/
-drwxr-xr-x root/root 0 2011-02-08 09:00 ./usr/share/man/man1/
--rw-r--r-- root/root 7554 2011-02-08 09:00 ./usr/share/man/man1/bwa.1.gz
-drwxr-xr-x root/root 0 2011-02-08 09:00 ./usr/share/bwa/
--rwxr-xr-x root/root 616 2011-01-25 00:00 ./usr/share/bwa/qualfa2fq.pl
--rwxr-xr-x root/root 3176 2011-01-25 00:00 ./usr/share/bwa/solid2fastq.pl
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -430,9 +414,38 @@ drwxr-xr-x root/root 0 2011-02-08 09:00 ./usr/share/bwa/
Built successfully
────────────────────────────────────────────────────────────────────────────────
-Purging /var/lib/schroot/mount/sid-i386-sbuild-946b0c24-fbad-4f1f-8340-f0459f369c02/build/buildd-bwa_0.5.9-1-i386-GDa6n4
-Not removing build depends: cloned chroot in use
+Purging /var/lib/schroot/mount/sid-i386-sbuild-edcec140-b833-4ae2-86d5-47d88591ad60/build/buildd-bwa_0.5.9-2-i386-kZdTyK
+(Reading database ... 11709 files and directories currently installed.)
+Removing zlib1g-dev ...
+Removing debhelper ...
+Removing po-debconf ...
+Removing man-db ...
+Purging configuration files for man-db ...
+Removing intltool-debian ...
+Removing groff-base ...
+Purging configuration files for groff-base ...
+Removing gettext ...
+Removing file ...
+Removing html2text ...
+Purging configuration files for html2text ...
+Removing gettext-base ...
+Removing libunistring0 ...
+Purging configuration files for libunistring0 ...
+Removing libcroco3 ...
+Purging configuration files for libcroco3 ...
+Removing libmagic1 ...
+Purging configuration files for libmagic1 ...
+Removing libpipeline1 ...
+Purging configuration files for libpipeline1 ...
+Removing libxml2 ...
+Purging configuration files for libxml2 ...
+Removing bsdmainutils ...
+Purging configuration files for bsdmainutils ...
+Removing libglib2.0-0 ...
+Purging configuration files for libglib2.0-0 ...
+Removing libpcre3 ...
+Purging configuration files for libpcre3 ...
────────────────────────────────────────────────────────────────────────────────
-Finished at 20110208-0900
-Build needed 00:02:15, 2444k disc space
+Finished at 20110312-0728
+Build needed 00:00:33, 2620k disc space
diff --git a/ia64.log b/ia64.log
index a0e46c3..f926ee9 100644
--- a/ia64.log
+++ b/ia64.log
@@ -1,72 +1,68 @@
-From buildd at caballero.debian.org Tue Feb 08 09:00:03 2011
-Return-path: <buildd at caballero.debian.org>
-Received: from kokkonen.debian.org ([2001:41b8:202:deb:216:35ff:fec4:6340])
+From buildd at mundy.debian.org Sat Mar 12 07:40:48 2011
+Return-path: <buildd at mundy.debian.org>
+Received: from kokkonen.debian.org ([82.195.75.97])
from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
CN=kokkonen.debian.org,
EMAIL=hostmaster at kokkonen.debian.org (verified)
by grieg.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
- (Exim 4.69) (envelope-from <buildd at caballero.debian.org>)
- id 1PmjQY-0003r4-Np
- for logs at buildd.debian.org; Tue, 08 Feb 2011 09:00:03 +0000
-Received: from caballero.debian.org ([193.201.200.200])
+ (Exim 4.69) (envelope-from <buildd at mundy.debian.org>)
+ id 1PyJRQ-00020g-1J
+ for logs at buildd.debian.org; Sat, 12 Mar 2011 07:40:48 +0000
+Received: from mundy.debian.org ([192.25.206.62])
from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
- CN=caballero.debian.org,
- EMAIL=hostmaster at caballero.debian.org (verified)
+ CN=mundy.debian.org, EMAIL=hostmaster at mundy.debian.org (verified)
by kokkonen.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
- (Exim 4.69) (envelope-from <buildd at caballero.debian.org>)
- id 1PmjQX-0008Pk-Je; Tue, 08 Feb 2011 09:00:01 +0000
-Received: from buildd by caballero.debian.org with local (Exim 4.69)
- (envelope-from <buildd at caballero.debian.org>) id 1PmjQV-0004NH-Be
- for buildd-porters at caballero.debian.org; Tue, 08 Feb 2011 08:59:59 +0000
-From: buildd on caballero <buildd at caballero.debian.org>
-To: buildd-porters at caballero.debian.org
-Subject: Log for successful build of bwa_0.5.9-1 on ia64 (dist=sid)
+ (Exim 4.69) (envelope-from <buildd at mundy.debian.org>)
+ id 1PyJRN-0004iL-UD
+ for logs at buildd.debian.org; Sat, 12 Mar 2011 07:40:46 +0000
+Received: from buildd by mundy.debian.org with local (Exim 4.69)
+ (envelope-from <buildd at mundy.debian.org>)
+ id 1PyJRJ-00043H-95; Sat, 12 Mar 2011 07:40:41 +0000
+From: buildd on mundy <buildd at mundy.debian.org>
+To: buildd-porters at mundy.debian.org,logs at buildd.debian.org
+Subject: Log for successful build of bwa_0.5.9-2 on ia64 (dist=sid)
Content-Type: text/plain; charset=UTF-8
Content-Transfer-Encoding: 8bit
-Message-Id: <E1PmjQV-0004NH-Be at caballero.debian.org>
-Date: Tue, 08 Feb 2011 08:59:59 +0000
-Delivered-To: buildd-porters at caballero.debian.org
+Message-Id: <E1PyJRJ-00043H-95 at mundy.debian.org>
+Date: Sat, 12 Mar 2011 07:40:41 +0000
Delivered-To: logs at buildd.debian.org
-sbuild (Debian sbuild) 0.60.0 (23 Feb 2010) on caballero.debian.org
+sbuild (Debian sbuild) 0.60.5 (14 Nov 2010) on mundy.debian.org
╔══════════════════════════════════════════════════════════════════════════════╗
-║ bwa 0.5.9-1 (ia64) 08 Feb 2011 08:58 ║
+║ bwa 0.5.9-2 (ia64) 12 Mar 2011 07:38 ║
╚══════════════════════════════════════════════════════════════════════════════╝
Package: bwa
-Version: 0.5.9-1
+Version: 0.5.9-2
Architecture: ia64
-Chroot Build Dir: /var/lib/schroot/mount/sid-ia64-sbuild-7b6e40ef-fd0d-4cc6-b286-8894c01872bf/build/buildd-bwa_0.5.9-1-ia64-mYX4RF
-Start Time: 20110208-0858
-Hit http://mirror.positive-internet.com sid Release.gpg
-Ign http://mirror.positive-internet.com/debian/ sid/contrib Translation-en
-Ign http://mirror.positive-internet.com/debian/ sid/main Translation-en
-Hit http://mirror.positive-internet.com sid Release
-Hit http://mirror.positive-internet.com sid/main Sources/DiffIndex
-Get:1 http://incoming.debian.org sid Release.gpg [835 B]
-Ign http://incoming.debian.org/debian/ sid/contrib Translation-en
-Ign http://incoming.debian.org/debian/ sid/main Translation-en
-Get:2 http://incoming.debian.org Release.gpg [835 B]
-Ign http://incoming.debian.org/buildd-unstable/ Translation-en
-Hit http://mirror.positive-internet.com sid/contrib Sources/DiffIndex
-Hit http://mirror.positive-internet.com sid/main ia64 Packages/DiffIndex
-Hit http://mirror.positive-internet.com sid/contrib ia64 Packages/DiffIndex
-Get:3 http://incoming.debian.org sid Release [104 kB]
-Get:4 http://incoming.debian.org Release [1604 B]
-Hit http://incoming.debian.org sid/main Sources/DiffIndex
-Hit http://incoming.debian.org sid/contrib Sources/DiffIndex
-Hit http://incoming.debian.org sid/main ia64 Packages/DiffIndex
-Hit http://incoming.debian.org sid/contrib ia64 Packages/DiffIndex
-Get:5 http://incoming.debian.org Sources [43.1 kB]
-Get:6 http://incoming.debian.org Packages [680 kB]
-Get:7 http://incoming.debian.org sid/main 2011-02-08-0812.10.pdiff [3472 B]
-Get:8 http://incoming.debian.org sid/main 2011-02-08-0812.10.pdiff [3472 B]
-Get:9 http://incoming.debian.org sid/main ia64 2011-02-08-0812.10.pdiff [1593 B]
-Get:10 http://incoming.debian.org sid/main 2011-02-08-0812.10.pdiff [3472 B]
-Get:11 http://incoming.debian.org sid/main ia64 2011-02-08-0812.10.pdiff [1593 B]
-Get:12 http://incoming.debian.org sid/main ia64 2011-02-08-0812.10.pdiff [1593 B]
-Fetched 731 kB in 8s (84.1 kB/s)
+Chroot Build Dir: /var/lib/schroot/mount/sid-ia64-sbuild-23704d2e-73ef-4e38-b692-16977a849610/build/buildd-bwa_0.5.9-2-ia64-GfsQMB
+Start Time: 20110312-0738
+Get:1 http://spohr.debian.org unstable InRelease [147 kB]
+Get:2 http://incoming.debian.org unstable InRelease [147 kB]
+Get:3 http://spohr.debian.org unstable/main Sources [4193 kB]
+Get:4 http://spohr.debian.org unstable/contrib Sources [38.7 kB]
+Get:5 http://spohr.debian.org unstable/non-free Sources [81.8 kB]
+Get:6 http://spohr.debian.org unstable/main ia64 Packages [6802 kB]
+Ign http://incoming.debian.org InRelease
+Get:7 http://incoming.debian.org Release.gpg [835 B]
+Get:8 http://incoming.debian.org unstable/main Sources [4193 kB]
+Get:9 http://spohr.debian.org unstable/contrib ia64 Packages [51.8 kB]
+Ign http://spohr.debian.org unstable/contrib TranslationIndex
+Get:10 http://spohr.debian.org unstable/main TranslationIndex [2232 B]
+Ign http://spohr.debian.org unstable/contrib Translation-en
+Get:11 http://incoming.debian.org unstable/contrib Sources [38.7 kB]
+Get:12 http://incoming.debian.org unstable/non-free Sources [81.8 kB]
+Get:13 http://incoming.debian.org unstable/main ia64 Packages [6802 kB]
+Get:14 http://incoming.debian.org unstable/contrib ia64 Packages [51.8 kB]
+Ign http://incoming.debian.org unstable/contrib TranslationIndex
+Get:15 http://incoming.debian.org unstable/main TranslationIndex [2232 B]
+Get:16 http://incoming.debian.org Release [1604 B]
+Get:17 http://incoming.debian.org Sources [36.1 kB]
+Get:18 http://incoming.debian.org Packages [524 kB]
+Ign http://incoming.debian.org unstable/contrib Translation-en
+Ign http://incoming.debian.org Translation-en
+Fetched 23.2 MB in 15s (1537 kB/s)
Reading package lists...
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -88,64 +84,91 @@ Reading state information...
NOTICE: 'bwa' packaging is maintained in the 'Git' version control system at:
git://git.debian.org/git/debian-med/bwa.git
Need to get 119 kB of source archives.
-Get:1 http://incoming.debian.org/buildd-unstable/ bwa 0.5.9-1 (dsc) [1894 B]
-Get:2 http://incoming.debian.org/buildd-unstable/ bwa 0.5.9-1 (tar) [114 kB]
-Get:3 http://incoming.debian.org/buildd-unstable/ bwa 0.5.9-1 (diff) [3651 B]
-Fetched 119 kB in 0s (212 kB/s)
+Get:1 http://incoming.debian.org/buildd-unstable/ bwa 0.5.9-2 (dsc) [1245 B]
+Get:2 http://incoming.debian.org/buildd-unstable/ bwa 0.5.9-2 (tar) [114 kB]
+Get:3 http://incoming.debian.org/buildd-unstable/ bwa 0.5.9-2 (diff) [3828 B]
+Fetched 119 kB in 0s (192 kB/s)
Download complete and in download only mode
Check arch
──────────
** Using build dependencies supplied by package:
-Build-Depends: cdbs, debhelper (>= 8), zlib1g-dev
+Build-Depends: debhelper (>= 8), zlib1g-dev
┌──────────────────────────────────────────────────────────────────────────────┐
│ Install build dependencies (internal resolver) │
└──────────────────────────────────────────────────────────────────────────────┘
Checking for already installed source dependencies...
-cdbs: missing
debhelper: missing
-Using default version 8.1.0
+Using default version 8.1.2
zlib1g-dev: missing
Checking for source dependency conflicts...
-Installing positive dependencies: cdbs debhelper zlib1g-dev
+Installing positive dependencies: debhelper zlib1g-dev
Reading package lists...
Building dependency tree...
Reading state information...
The following extra packages will be installed:
- gettext gettext-base groff-base html2text intltool-debian libcroco3
- libglib2.0-0 libpcre3 libunistring0 libxml2 man-db po-debconf
+ bsdmainutils file gettext gettext-base groff-base html2text intltool-debian
+ libcroco3 libglib2.0-0 libmagic1 libpcre3 libpipeline1 libunistring0 libxml2
+ man-db po-debconf
Suggested packages:
- devscripts doc-base dh-make gettext-doc groff less www-browser
+ wamerican wordlist whois vacation dh-make gettext-doc groff less www-browser
libmail-box-perl
Recommended packages:
- autotools-dev curl wget lynx-cur autopoint libglib2.0-data shared-mime-info
- xml-core libmail-sendmail-perl
+ curl wget lynx-cur autopoint libglib2.0-data shared-mime-info xml-core
+ libmail-sendmail-perl
The following NEW packages will be installed:
- cdbs debhelper gettext gettext-base groff-base html2text intltool-debian
- libcroco3 libglib2.0-0 libpcre3 libunistring0 libxml2 man-db po-debconf
- zlib1g-dev
+ bsdmainutils debhelper file gettext gettext-base groff-base html2text
+ intltool-debian libcroco3 libglib2.0-0 libmagic1 libpcre3 libpipeline1
+ libunistring0 libxml2 man-db po-debconf zlib1g-dev
+0 upgraded, 18 newly installed, 0 to remove and 1 not upgraded.
+Need to get 11.0 MB of archives.
+After this operation, 38.1 MB of additional disk space will be used.
+Get:1 http://spohr.debian.org/debian/ unstable/main bsdmainutils ia64 8.2.2 [236 kB]
+Get:2 http://spohr.debian.org/debian/ unstable/main groff-base ia64 1.21-4 [1400 kB]
+Get:3 http://spohr.debian.org/debian/ unstable/main libpipeline1 ia64 1.1.0-1 [46.5 kB]
+Get:4 http://spohr.debian.org/debian/ unstable/main man-db ia64 2.5.9-4 [1154 kB]
+Get:5 http://spohr.debian.org/debian/ unstable/main libmagic1 ia64 5.04-5 [263 kB]
+Get:6 http://spohr.debian.org/debian/ unstable/main file ia64 5.04-5 [51.9 kB]
+Get:7 http://spohr.debian.org/debian/ unstable/main gettext-base ia64 0.18.1.1-3 [174 kB]
+Get:8 http://spohr.debian.org/debian/ unstable/main libpcre3 ia64 8.12-3 [316 kB]
+Get:9 http://spohr.debian.org/debian/ unstable/main libxml2 ia64 2.7.8.dfsg-2 [1181 kB]
+Get:10 http://spohr.debian.org/debian/ unstable/main html2text ia64 1.3.2a-15 [134 kB]
+Get:11 http://spohr.debian.org/debian/ unstable/main libglib2.0-0 ia64 2.28.1-1+b1 [1963 kB]
+Get:12 http://spohr.debian.org/debian/ unstable/main libcroco3 ia64 0.6.2-1 [155 kB]
+Get:13 http://spohr.debian.org/debian/ unstable/main libunistring0 ia64 0.9.3-3 [469 kB]
+Get:14 http://spohr.debian.org/debian/ unstable/main gettext ia64 0.18.1.1-3 [2453 kB]
+Get:15 http://spohr.debian.org/debian/ unstable/main intltool-debian ia64 0.35.0+20060710.1 [30.8 kB]
+Get:16 http://spohr.debian.org/debian/ unstable/main po-debconf ia64 1.0.16+nmu1 [223 kB]
+Get:17 http://spohr.debian.org/debian/ unstable/main debhelper ia64 8.1.2 [553 kB]
+Get:18 http://spohr.debian.org/debian/ unstable/main zlib1g-dev ia64 1:1.2.3.4.dfsg-3 [224 kB]
debconf: delaying package configuration, since apt-utils is not installed
-0 upgraded, 15 newly installed, 0 to remove and 41 not upgraded.
-Need to get 0 B/11.9 MB of archives.
-After this operation, 37.4 MB of additional disk space will be used.
+Fetched 11.0 MB in 0s (14.2 MB/s)
+Selecting previously deselected package bsdmainutils.
+(Reading database ... 10169 files and directories currently installed.)
+Unpacking bsdmainutils (from .../bsdmainutils_8.2.2_ia64.deb) ...
Selecting previously deselected package groff-base.
-(Reading database ... 10389 files and directories currently installed.)
-Unpacking groff-base (from .../groff-base_1.20.1-10_ia64.deb) ...
+Unpacking groff-base (from .../groff-base_1.21-4_ia64.deb) ...
+Selecting previously deselected package libpipeline1.
+Unpacking libpipeline1 (from .../libpipeline1_1.1.0-1_ia64.deb) ...
Selecting previously deselected package man-db.
-Unpacking man-db (from .../man-db_2.5.7-8_ia64.deb) ...
+Unpacking man-db (from .../man-db_2.5.9-4_ia64.deb) ...
+Selecting previously deselected package libmagic1.
+Unpacking libmagic1 (from .../libmagic1_5.04-5_ia64.deb) ...
+Selecting previously deselected package file.
+Unpacking file (from .../archives/file_5.04-5_ia64.deb) ...
Selecting previously deselected package gettext-base.
Unpacking gettext-base (from .../gettext-base_0.18.1.1-3_ia64.deb) ...
Selecting previously deselected package libpcre3.
-Unpacking libpcre3 (from .../libpcre3_8.02-1.1_ia64.deb) ...
+Unpacking libpcre3 (from .../libpcre3_8.12-3_ia64.deb) ...
Selecting previously deselected package libxml2.
Unpacking libxml2 (from .../libxml2_2.7.8.dfsg-2_ia64.deb) ...
Selecting previously deselected package html2text.
Unpacking html2text (from .../html2text_1.3.2a-15_ia64.deb) ...
Selecting previously deselected package libglib2.0-0.
-Unpacking libglib2.0-0 (from .../libglib2.0-0_2.24.2-1_ia64.deb) ...
+Unpacking libglib2.0-0 (from .../libglib2.0-0_2.28.1-1+b1_ia64.deb) ...
Selecting previously deselected package libcroco3.
Unpacking libcroco3 (from .../libcroco3_0.6.2-1_ia64.deb) ...
Selecting previously deselected package libunistring0.
@@ -153,36 +176,40 @@ Unpacking libunistring0 (from .../libunistring0_0.9.3-3_ia64.deb) ...
Selecting previously deselected package gettext.
Unpacking gettext (from .../gettext_0.18.1.1-3_ia64.deb) ...
Selecting previously deselected package intltool-debian.
-Unpacking intltool-debian (from .../intltool-debian_0.35.0+20060710.1_all.deb) ...
+Unpacking intltool-debian (from .../intltool-debian_0.35.0+20060710.1_ia64.deb) ...
Selecting previously deselected package po-debconf.
-Unpacking po-debconf (from .../po-debconf_1.0.16+nmu1_all.deb) ...
+Unpacking po-debconf (from .../po-debconf_1.0.16+nmu1_ia64.deb) ...
Selecting previously deselected package debhelper.
-Unpacking debhelper (from .../debhelper_8.1.0_all.deb) ...
-Selecting previously deselected package cdbs.
-Unpacking cdbs (from .../archives/cdbs_0.4.89_all.deb) ...
+Unpacking debhelper (from .../debhelper_8.1.2_ia64.deb) ...
Selecting previously deselected package zlib1g-dev.
Unpacking zlib1g-dev (from .../zlib1g-dev_1%3a1.2.3.4.dfsg-3_ia64.deb) ...
-Setting up groff-base (1.20.1-10) ...
-Setting up man-db (2.5.7-8) ...
+Setting up bsdmainutils (8.2.2) ...
+update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode.
+update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode.
+Setting up groff-base (1.21-4) ...
+Setting up libpipeline1 (1.1.0-1) ...
+Setting up man-db (2.5.9-4) ...
Building database of manual pages ...
+Setting up libmagic1 (5.04-5) ...
+Setting up file (5.04-5) ...
Setting up gettext-base (0.18.1.1-3) ...
-Setting up libpcre3 (8.02-1.1) ...
+Setting up libpcre3 (8.12-3) ...
Setting up libxml2 (2.7.8.dfsg-2) ...
Setting up html2text (1.3.2a-15) ...
-Setting up libglib2.0-0 (2.24.2-1) ...
+Setting up libglib2.0-0 (2.28.1-1+b1) ...
+No schema files found: doing nothing.
Setting up libcroco3 (0.6.2-1) ...
Setting up libunistring0 (0.9.3-3) ...
Setting up gettext (0.18.1.1-3) ...
Setting up intltool-debian (0.35.0+20060710.1) ...
Setting up po-debconf (1.0.16+nmu1) ...
-Setting up debhelper (8.1.0) ...
-Setting up cdbs (0.4.89) ...
+Setting up debhelper (8.1.2) ...
Setting up zlib1g-dev (1:1.2.3.4.dfsg-3) ...
Removing negative dependencies:
Checking correctness of source dependencies...
Kernel: Linux 2.6.32-bpo.5-mckinley ia64 (ia64)
-Toolchain package versions: libc6.1-dev_2.11.2-8 dpkg-dev_1.15.8.5 linux-libc-dev_2.6.32-30 gcc-4.4_4.4.5-10 g++-4.4_4.4.5-10 binutils_2.20.1-15 libstdc++6-4.4-dev_4.4.5-10 libstdc++6_4.4.5-10
-Package versions: apt_0.8.10.3 autoconf_2.67-2 base-files_5.9 base-passwd_3.5.22 bash_4.1-3 binutils_2.20.1-15 bsdmainutils_8.0.13 bsdutils_1:2.17.2-3.1 build-essential_11.5 bzip2_1.0.5-6 cdbs_0.4.89 coreutils_8.5-1 cpp_4:4.4.5-2 cpp-4.4_4.4.5-10 dash_0.5.5.1-7 debconf_1.5.35 debconf-i18n_1.5.35 debfoster_2.7-1.1 debhelper_8.1.0 debian-archive-keyring_2010.08.28 debianutils_3.4.1 diffutils_1:3.0-1 dpkg_1.15.8.5 dpkg-dev_1.15.8.5 e2fslibs_1.41.12-2 e2fsprogs_1.41.12-2 fakeroot_1.14.4-1 file_5.04-5 findutils_4.4.2-1 g++_4:4.4.4-2 g++-4.4_4.4.5-10 gcc_4:4.4.5-2 gcc-4.4_4.4.5-10 gcc-4.4-base_4.4.5-10 gettext_0.18.1.1-3 gettext-base_0.18.1.1-3 gnupg_1.4.10-4 gpgv_1.4.10-4 grep_2.6.3-3 groff-base_1.20.1-10 gzip_1.3.12-9 hostname_3.04 html2text_1.3.2a-15 initscripts_2.88dsf-12 insserv_1.14.0-2 intltool-debian_0.35.0+20060710.1 libacl1_2.2.49-4 libattr1_1:2.4.44-2 libblkid1_2.17.2-7 libbz2-1.0_1.0.5-6 libc-bin_2.11.2-8 libc-dev-bin_2.11.2-8 libc6.1_2.11.2-8 libc6.1-dev_2.11.2-8 libcomerr2_1.41.12-2 libcroco3_0.6.2-1 libdb4.7_4.7.25-9 libdb4.8_4.8.30-3 libdpkg-perl_1.15.8.5 libgc1c2_1:6.8-1.2 libgcc1_1:4.4.5-10 libgdbm3_1.8.3-9 libglib2.0-0_2.24.2-1 libgmp3c2_2:4.3.2+dfsg-1 libgomp1_4.4.5-10 liblocale-gettext-perl_1.05-6 liblzma2_5.0.0-2 libmagic1_5.04-5 libmpfr1ldbl_2.4.2-3 libmpfr4_3.0.0-2 libncurses5_5.7+20100313-5 libpam-modules_1.1.1-6 libpam-runtime_1.1.1-6 libpam0g_1.1.1-6.1 libpcre3_8.02-1.1 libreadline6_6.1-3 libselinux1_2.0.96-1 libsepol1_2.0.42-1 libss2_1.41.12-2 libstdc++6_4.4.5-10 libstdc++6-4.4-dev_4.4.5-10 libtext-charwidth-perl_0.04-6 libtext-iconv-perl_1.7-2 libtext-wrapi18n-perl_0.06-7 libtimedate-perl_1.2000-1 libunistring0_0.9.3-3 libunwind7_0.99-0.2 libunwind7-dev_0.99-0.2 libusb-0.1-4_2:0.1.12-16 libuuid1_2.17.2-9 libxml2_2.7.8.dfsg-2 linux-libc-dev_2.6.32-30 login_1:4.1.4.2+svn3283-1 lsb-base_3.2-24 lzma_4.43-14 m4_1.4.14-3 make_3.81-8 man-db_2.5.7-8 mawk_1.3.3-15 mount_2.17.2-3.1 ncurses-base_5.7+20100313-3 ncurses-bin_5.7+20100313-5 passwd_1:4.1.4.2+svn3283-1 patch_2.6-2 perl_5.10.1-17 perl-base_5.10.1-17 perl-modules_5.10.1-17 po-debconf_1.0.16+nmu1 readline-common_6.1-3 sed_4.2.1-7 sensible-utils_0.0.4 sudo_1.7.4p4-2 sysv-rc_2.88dsf-12 sysvinit_2.88dsf-12 sysvinit-utils_2.88dsf-12 tar_1.23-2.1 tzdata_2011a-1 util-linux_2.17.2-3.1 xz-utils_4.999.9beta+20100810-1 zlib1g_1:1.2.3.4.dfsg-3 zlib1g-dev_1:1.2.3.4.dfsg-3
+Toolchain package versions: libc6.1-dev_2.11.2-13 dpkg-dev_1.15.8.10 linux-libc-dev_2.6.37-2 gcc-4.4_4.4.5-13 g++-4.4_4.4.5-13 binutils_2.21.0.20110302-1 libstdc++6-4.4-dev_4.4.5-13 libstdc++6_4.5.2-5
+Package versions: apt_0.8.12 base-files_6.1 base-passwd_3.5.22 bash_4.1-3 binutils_2.21.0.20110302-1 bsdmainutils_8.2.2 bsdutils_1:2.17.2-9.1 build-essential_11.5 bzip2_1.0.5-6 coreutils_8.5-1 cpp_4:4.4.5-4 cpp-4.4_4.4.5-13 dash_0.5.5.1-7.4 debconf_1.5.38 debconf-i18n_1.5.38 debfoster_2.7-1.1 debhelper_8.1.2 debian-archive-keyring_2010.08.28 debianutils_3.4.4 diffutils_1:3.0-1 dpkg_1.15.8.10 dpkg-dev_1.15.8.10 e2fslibs_1.41.12-2 e2fsprogs_1.41.12-2 fakeroot_1.14.5-2 file_5.04-5 findutils_4.4.2-1+b1 g++_4:4.4.5-4 g++-4.4_4.4.5-13 gcc_4:4.4.5-4 gcc-4.4_4.4.5-13 gcc-4.4-base_4.4.5-13 gcc-4.5-base_4.5.2-5 gettext_0.18.1.1-3 gettext-base_0.18.1.1-3 gnupg_1.4.11-3 gpgv_1.4.11-3 grep_2.6.3-3 groff-base_1.21-4 gzip_1.3.12-9 hostname_3.06 html2text_1.3.2a-15 initscripts_2.88dsf-13.1 insserv_1.14.0-2 intltool-debian_0.35.0+20060710.1 libacl1_2.2.49-4 libattr1_1:2.4.44-2 libblkid1_2.17.2-9.1 libbz2-1.0_1.0.5-6 libc-bin_2.11.2-13 libc-dev-bin_2.11.2-13 libc6.1_2.11.2-13 libc6.1-dev_2.11.2-13 libcomerr2_1.41.12-2 libcroco3_0.6.2-1 libdb4.7_4.7.25-12 libdb4.8_4.8.30-5 libdpkg-perl_1.15.8.10 libgc1c2_1:7.1-7 libgcc1_1:4.5.2-5 libgdbm3_1.8.3-9 libglib2.0-0_2.28.1-1+b1 libgmp10_2:5.0.1+dfsg-6 libgmp3c2_2:4.3.2+dfsg-1 libgomp1_4.5.2-5 liblocale-gettext-perl_1.05-6 liblzma2_5.0.0-2 libmagic1_5.04-5 libmpfr1ldbl_2.4.2-3 libmpfr4_3.0.0-9 libncurses5_5.8+20110307-1 libpam-modules_1.1.2-2 libpam-runtime_1.1.2-2 libpam0g_1.1.2-2 libpcre3_8.12-3 libpipeline1_1.1.0-1 libreadline6_6.1-3 libselinux1_2.0.96-1 libsepol1_2.0.42-1 libslang2_2.2.2-4 libss2_1.41.12-2 libstdc++6_4.5.2-5 libstdc++6-4.4-dev_4.4.5-13 libtext-charwidth-perl_0.04-6 libtext-iconv-perl_1.7-2 libtext-wrapi18n-perl_0.06-7 libtimedate-perl_1.2000-1 libunistring0_0.9.3-3 libunwind7_0.99-0.2 libunwind7-dev_0.99-0.2 libusb-0.1-4_2:0.1.12-17 libuuid1_2.17.2-9.1 libxml2_2.7.8.dfsg-2 linux-libc-dev_2.6.37-2 login_1:4.1.4.2+svn3283-3 lsb-base_3.2-27 lzma_4.43-14 make_3.81-8 man-db_2.5.9-4 mawk_1.3.3-15 mount_2.17.2-9.1 ncurses-base_5.8+20110307-1 ncurses-bin_5.8+20110307-1 passwd_1:4.1.4.2+svn3283-3 patch_2.6.1-1 perl_5.10.1-17 perl-base_5.10.1-17 perl-modules_5.10.1-17 po-debconf_1.0.16+nmu1 readline-common_6.1-3 sed_4.2.1-9 sensible-utils_0.0.6 sudo_1.7.4p6-1 sysv-rc_2.88dsf-13.1 sysvinit_2.88dsf-13.1 sysvinit-utils_2.88dsf-13.1 tar_1.25-3 tzdata_2011c-1 util-linux_2.17.2-9.1 xz-utils_5.0.0-2 zlib1g_1:1.2.3.4.dfsg-3 zlib1g-dev_1:1.2.3.4.dfsg-3
┌──────────────────────────────────────────────────────────────────────────────┐
│ Build │
@@ -194,12 +221,12 @@ Unpack source
dpkg-source: warning: -sn is not a valid option for Dpkg::Source::Package::V3::quilt
gpgv: keyblock resource `/home/buildd/.gnupg/trustedkeys.gpg': file open error
-gpgv: Signature made Tue Feb 8 07:20:43 2011 UTC using RSA key ID 2295D502
+gpgv: Signature made Fri Mar 11 21:59:41 2011 UTC using DSA key ID C09FD35A
gpgv: Can't check signature: public key not found
-dpkg-source: warning: failed to verify signature on ./bwa_0.5.9-1.dsc
+dpkg-source: warning: failed to verify signature on ./bwa_0.5.9-2.dsc
dpkg-source: info: extracting bwa in bwa-0.5.9
dpkg-source: info: unpacking bwa_0.5.9.orig.tar.bz2
-dpkg-source: info: unpacking bwa_0.5.9-1.debian.tar.gz
+dpkg-source: info: unpacking bwa_0.5.9-2.debian.tar.gz
Check disc space
────────────────
@@ -214,154 +241,155 @@ dpkg-buildpackage: export CXXFLAGS from dpkg-buildflags (origin: vendor): -g -O2
dpkg-buildpackage: export FFLAGS from dpkg-buildflags (origin: vendor): -g -O2
dpkg-buildpackage: export LDFLAGS from dpkg-buildflags (origin: vendor):
dpkg-buildpackage: source package bwa
-dpkg-buildpackage: source version 0.5.9-1
+dpkg-buildpackage: source version 0.5.9-2
dpkg-source --before-build bwa-0.5.9
dpkg-buildpackage: host architecture ia64
/usr/bin/fakeroot debian/rules clean
-test -x debian/rules
-dh_testroot
-rm -f debian/stamp-makefile-build debian/stamp-makefile-install
-/usr/bin/make -C . CFLAGS="-g -O2 -g -Wall -O2" CXXFLAGS="-g -O2 -g -Wall -O2" CPPFLAGS="" LDFLAGS="" -k clean
-make[1]: Entering directory `/build/buildd-bwa_0.5.9-1-ia64-mYX4RF/bwa-0.5.9'
-make[2]: Entering directory `/build/buildd-bwa_0.5.9-1-ia64-mYX4RF/bwa-0.5.9'
+dh clean
+ dh_testdir
+ dh_auto_clean
+make[1]: Entering directory `/build/buildd-bwa_0.5.9-2-ia64-GfsQMB/bwa-0.5.9'
+make[2]: Entering directory `/build/buildd-bwa_0.5.9-2-ia64-GfsQMB/bwa-0.5.9'
rm -f gmon.out *.o a.out bwa *~ *.a
-make[2]: Leaving directory `/build/buildd-bwa_0.5.9-1-ia64-mYX4RF/bwa-0.5.9'
-make[2]: Entering directory `/build/buildd-bwa_0.5.9-1-ia64-mYX4RF/bwa-0.5.9/bwt_gen'
+make[2]: Leaving directory `/build/buildd-bwa_0.5.9-2-ia64-GfsQMB/bwa-0.5.9'
+make[2]: Entering directory `/build/buildd-bwa_0.5.9-2-ia64-GfsQMB/bwa-0.5.9/bwt_gen'
rm -f gmon.out *.o a.out *~ *.a
-make[2]: Leaving directory `/build/buildd-bwa_0.5.9-1-ia64-mYX4RF/bwa-0.5.9/bwt_gen'
-make[1]: Leaving directory `/build/buildd-bwa_0.5.9-1-ia64-mYX4RF/bwa-0.5.9'
-dh_clean
+make[2]: Leaving directory `/build/buildd-bwa_0.5.9-2-ia64-GfsQMB/bwa-0.5.9/bwt_gen'
+make[1]: Leaving directory `/build/buildd-bwa_0.5.9-2-ia64-GfsQMB/bwa-0.5.9'
+ dh_clean
debian/rules build
-test -x debian/rules
-mkdir -p "."
-/usr/bin/make -C . CFLAGS="-g -O2 -g -Wall -O2" CXXFLAGS="-g -O2 -g -Wall -O2" CPPFLAGS="" LDFLAGS=""
-make[1]: Entering directory `/build/buildd-bwa_0.5.9-1-ia64-mYX4RF/bwa-0.5.9'
-make[2]: Entering directory `/build/buildd-bwa_0.5.9-1-ia64-mYX4RF/bwa-0.5.9'
+dh build
+ dh_testdir
+ dh_auto_configure
+ dh_auto_build
+make[1]: Entering directory `/build/buildd-bwa_0.5.9-2-ia64-GfsQMB/bwa-0.5.9'
+make[2]: Entering directory `/build/buildd-bwa_0.5.9-2-ia64-GfsQMB/bwa-0.5.9'
make[2]: Nothing to be done for `lib'.
-make[2]: Leaving directory `/build/buildd-bwa_0.5.9-1-ia64-mYX4RF/bwa-0.5.9'
-make[2]: Entering directory `/build/buildd-bwa_0.5.9-1-ia64-mYX4RF/bwa-0.5.9/bwt_gen'
-gcc -c -g -O2 -g -Wall -O2 -DHAVE_PTHREAD bwt_gen.c -o bwt_gen.o
-gcc -c -g -O2 -g -Wall -O2 -DHAVE_PTHREAD QSufSort.c -o QSufSort.o
+make[2]: Leaving directory `/build/buildd-bwa_0.5.9-2-ia64-GfsQMB/bwa-0.5.9'
+make[2]: Entering directory `/build/buildd-bwa_0.5.9-2-ia64-GfsQMB/bwa-0.5.9/bwt_gen'
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD bwt_gen.c -o bwt_gen.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD QSufSort.c -o QSufSort.o
ar -cru libbwtgen.a bwt_gen.o QSufSort.o
-make[2]: Leaving directory `/build/buildd-bwa_0.5.9-1-ia64-mYX4RF/bwa-0.5.9/bwt_gen'
-gcc -c -g -O2 -g -Wall -O2 -DHAVE_PTHREAD utils.c -o utils.o
-gcc -c -g -O2 -g -Wall -O2 -DHAVE_PTHREAD bwt.c -o bwt.o
-gcc -c -g -O2 -g -Wall -O2 -DHAVE_PTHREAD bwtio.c -o bwtio.o
-gcc -c -g -O2 -g -Wall -O2 -DHAVE_PTHREAD bwtaln.c -o bwtaln.o
-gcc -c -g -O2 -g -Wall -O2 -DHAVE_PTHREAD bwtgap.c -o bwtgap.o
-gcc -c -g -O2 -g -Wall -O2 -DHAVE_PTHREAD is.c -o is.o
-gcc -c -g -O2 -g -Wall -O2 -DHAVE_PTHREAD bntseq.c -o bntseq.o
-gcc -c -g -O2 -g -Wall -O2 -DHAVE_PTHREAD bwtmisc.c -o bwtmisc.o
-gcc -c -g -O2 -g -Wall -O2 -DHAVE_PTHREAD bwtindex.c -o bwtindex.o
-gcc -c -g -O2 -g -Wall -O2 -DHAVE_PTHREAD stdaln.c -o stdaln.o
-gcc -c -g -O2 -g -Wall -O2 -DHAVE_PTHREAD simple_dp.c -o simple_dp.o
-gcc -c -g -O2 -g -Wall -O2 -DHAVE_PTHREAD bwaseqio.c -o bwaseqio.o
-gcc -c -g -O2 -g -Wall -O2 -DHAVE_PTHREAD bwase.c -o bwase.o
-gcc -c -g -O2 -g -Wall -O2 -DHAVE_PTHREAD bwape.c -o bwape.o
-gcc -c -g -O2 -g -Wall -O2 -DHAVE_PTHREAD kstring.c -o kstring.o
-gcc -c -g -O2 -g -Wall -O2 -DHAVE_PTHREAD cs2nt.c -o cs2nt.o
-gcc -c -g -O2 -g -Wall -O2 -DHAVE_PTHREAD bwtsw2_core.c -o bwtsw2_core.o
-gcc -c -g -O2 -g -Wall -O2 -DHAVE_PTHREAD bwtsw2_main.c -o bwtsw2_main.o
-gcc -c -g -O2 -g -Wall -O2 -DHAVE_PTHREAD bwtsw2_aux.c -o bwtsw2_aux.o
-gcc -c -g -O2 -g -Wall -O2 -DHAVE_PTHREAD bwt_lite.c -o bwt_lite.o
-gcc -c -g -O2 -g -Wall -O2 -DHAVE_PTHREAD bwtsw2_chain.c -o bwtsw2_chain.o
-gcc -c -g -O2 -g -Wall -O2 -DHAVE_PTHREAD bamlite.c -o bamlite.o
-gcc -c -g -O2 -g -Wall -O2 -DHAVE_PTHREAD main.c -o main.o
-gcc -g -O2 -g -Wall -O2 -DHAVE_PTHREAD utils.o bwt.o bwtio.o bwtaln.o bwtgap.o is.o bntseq.o bwtmisc.o bwtindex.o stdaln.o simple_dp.o bwaseqio.o bwase.o bwape.o kstring.o cs2nt.o bwtsw2_core.o bwtsw2_main.o bwtsw2_aux.o bwt_lite.o bwtsw2_chain.o bamlite.o main.o -o bwa -lm -lz -lpthread -Lbwt_gen -lbwtgen
-make[1]: Leaving directory `/build/buildd-bwa_0.5.9-1-ia64-mYX4RF/bwa-0.5.9'
-touch debian/stamp-makefile-build
-DEB_MAKE_CHECK_TARGET unset, not running checks
+make[2]: Leaving directory `/build/buildd-bwa_0.5.9-2-ia64-GfsQMB/bwa-0.5.9/bwt_gen'
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD utils.c -o utils.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD bwt.c -o bwt.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD bwtio.c -o bwtio.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD bwtaln.c -o bwtaln.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD bwtgap.c -o bwtgap.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD is.c -o is.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD bntseq.c -o bntseq.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD bwtmisc.c -o bwtmisc.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD bwtindex.c -o bwtindex.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD stdaln.c -o stdaln.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD simple_dp.c -o simple_dp.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD bwaseqio.c -o bwaseqio.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD bwase.c -o bwase.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD bwape.c -o bwape.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD kstring.c -o kstring.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD cs2nt.c -o cs2nt.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD bwtsw2_core.c -o bwtsw2_core.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD bwtsw2_main.c -o bwtsw2_main.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD bwtsw2_aux.c -o bwtsw2_aux.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD bwt_lite.c -o bwt_lite.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD bwtsw2_chain.c -o bwtsw2_chain.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD bamlite.c -o bamlite.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD main.c -o main.o
+gcc -g -Wall -O2 -DHAVE_PTHREAD utils.o bwt.o bwtio.o bwtaln.o bwtgap.o is.o bntseq.o bwtmisc.o bwtindex.o stdaln.o simple_dp.o bwaseqio.o bwase.o bwape.o kstring.o cs2nt.o bwtsw2_core.o bwtsw2_main.o bwtsw2_aux.o bwt_lite.o bwtsw2_chain.o bamlite.o main.o -o bwa -lm -lz -lpthread -Lbwt_gen -lbwtgen
+make[1]: Leaving directory `/build/buildd-bwa_0.5.9-2-ia64-GfsQMB/bwa-0.5.9'
+ dh_auto_test
/usr/bin/fakeroot debian/rules binary-arch
-test -x debian/rules
-dh_testroot
-dh_prep
-dh_installdirs -A
-mkdir -p "."
-DEB_MAKE_CHECK_TARGET unset, not running checks
-DEB_MAKE_INSTALL_TARGET unset, skipping default makefile.mk common-install target
-Adding cdbs dependencies to debian/bwa.substvars
-dh_installdirs -pbwa
-dh_installdocs -pbwa ./README ./NEWS
-dh_installexamples -pbwa
-dh_installman -pbwa
-dh_installinfo -pbwa
-dh_installmenu -pbwa
-dh_installcron -pbwa
-dh_installinit -pbwa
-dh_installdebconf -pbwa
-dh_installemacsen -pbwa
-dh_installcatalogs -pbwa
-dh_installpam -pbwa
-dh_installlogrotate -pbwa
-dh_installlogcheck -pbwa
-dh_installchangelogs -pbwa ./ChangeLog
-dh_installudev -pbwa
-dh_lintian -pbwa
-dh_install -pbwa
-dh_link -pbwa
-dh_installmime -pbwa
-dh_strip -pbwa
-dh_compress -pbwa
-dh_fixperms -pbwa
-dh_makeshlibs -pbwa
-dh_installdeb -pbwa
-dh_perl -pbwa
-dh_shlibdeps -pbwa
-dh_gencontrol -pbwa
+dh binary-arch
+ dh_testroot -a
+ dh_prep -a
+ dh_installdirs -a
+ dh_auto_install -a
+ dh_install -a
+ dh_installdocs -a
+ dh_installchangelogs -a
+ dh_installexamples -a
+ dh_installman -a
+ dh_installcatalogs -a
+ dh_installcron -a
+ dh_installdebconf -a
+ dh_installemacsen -a
+ dh_installifupdown -a
+ dh_installinfo -a
+ dh_installinit -a
+ dh_installmenu -a
+ dh_installmime -a
+ dh_installmodules -a
+ dh_installlogcheck -a
+ dh_installlogrotate -a
+ dh_installpam -a
+ dh_installppp -a
+ dh_installudev -a
+ dh_installwm -a
+ dh_installxfonts -a
+ dh_bugfiles -a
+ dh_lintian -a
+ dh_gconf -a
+ dh_icons -a
+ dh_perl -a
+ dh_usrlocal -a
+ dh_link -a
+ dh_compress -a
+ dh_fixperms -a
+ dh_strip -a
+ dh_makeshlibs -a
+ dh_shlibdeps -a
+ dh_installdeb -a
+ dh_gencontrol -a
dpkg-gencontrol: warning: package bwa: unused substitution variable ${perl:Depends}
-dh_md5sums -pbwa
-dh_builddeb -pbwa
-dpkg-deb: building package `bwa' in `../bwa_0.5.9-1_ia64.deb'.
- dpkg-genchanges -B -mia64 Build Daemon (caballero) <buildd_ia64-caballero at buildd.debian.org> >../bwa_0.5.9-1_ia64.changes
+ dh_md5sums -a
+ dh_builddeb -a
+dpkg-deb: building package `bwa' in `../bwa_0.5.9-2_ia64.deb'.
+ dpkg-genchanges -B -mia64 Build Daemon (mundy) <buildd_ia64-mundy at buildd.debian.org> >../bwa_0.5.9-2_ia64.changes
dpkg-genchanges: arch-specific upload - not including arch-independent packages
dpkg-genchanges: binary-only upload - not including any source code
dpkg-source --after-build bwa-0.5.9
dpkg-buildpackage: binary only upload (no source included)
────────────────────────────────────────────────────────────────────────────────
-Build finished at 20110208-0859
+Build finished at 20110312-0740
-bwa_0.5.9-1_ia64.changes:
+bwa_0.5.9-2_ia64.changes:
Format: 1.8
-Date: Tue, 08 Feb 2011 16:11:12 +0900
+Date: Fri, 11 Mar 2011 22:49:07 +0100
Source: bwa
Binary: bwa
Architecture: ia64
-Version: 0.5.9-1
+Version: 0.5.9-2
Distribution: sid
Urgency: low
-Maintainer: ia64 Build Daemon (caballero) <buildd_ia64-caballero at buildd.debian.org>
-Changed-By: Charles Plessy <plessy at debian.org>
+Maintainer: ia64 Build Daemon (mundy) <buildd_ia64-mundy at buildd.debian.org>
+Changed-By: Andreas Tille <tille at debian.org>
Description:
bwa - Burrows-Wheeler Aligner
Changes:
- bwa (0.5.9-1) unstable; urgency=low
+ bwa (0.5.9-2) unstable; urgency=low
.
- * New usptream release
- - Upstream moved to GitHub (debian/upstream-metadata.yaml).
- - Checked copyright; one file was removed (debian/copyright).
- * Migrated the Debian source package to Git (debian/control).
- * Use Debhelper 8 (debian/control, debian/compat).
+ * Watchfile should not regard rc releases.
+ * Drop cdbs in favour of dh
Checksums-Sha1:
- 3e2cd190f2a5c9127845be41bd867eaaf58aea7b 206904 bwa_0.5.9-1_ia64.deb
+ 5f590d66cb5fa31bb38793047efc8fccf3f71817 207460 bwa_0.5.9-2_ia64.deb
Checksums-Sha256:
- 990e3f6606a6fa6bc29b910f13c7a78ee83955135288517d88136fd827c1e442 206904 bwa_0.5.9-1_ia64.deb
+ 49d18ee4011bd7e94182545403c882e07720be08e1a133ab00b4dedb2f0e72e3 207460 bwa_0.5.9-2_ia64.deb
Files:
- dac1bf8adcbb484689b4a142ce0fbf3a 206904 science optional bwa_0.5.9-1_ia64.deb
+ a98c1d2f00cc37ddd6be0566a78f269b 207460 science optional bwa_0.5.9-2_ia64.deb
┌──────────────────────────────────────────────────────────────────────────────┐
│ Package contents │
└──────────────────────────────────────────────────────────────────────────────┘
-bwa_0.5.9-1_ia64.deb
+bwa_0.5.9-2_ia64.deb
────────────────────
new debian package, version 2.0.
- size 206904 bytes: control archive= 976 bytes.
+ size 207460 bytes: control archive= 975 bytes.
775 bytes, 17 lines control
615 bytes, 10 lines md5sums
Package: bwa
- Version: 0.5.9-1
+ Version: 0.5.9-2
Architecture: ia64
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
Installed-Size: 536
@@ -378,25 +406,25 @@ bwa_0.5.9-1_ia64.deb
to around 100 kbp. Both algorithms do gapped alignment. They are usually more
accurate and faster on queries with low error rates.
-drwxr-xr-x root/root 0 2011-02-08 08:59 ./
-drwxr-xr-x root/root 0 2011-02-08 08:59 ./usr/
-drwxr-xr-x root/root 0 2011-02-08 08:59 ./usr/share/
-drwxr-xr-x root/root 0 2011-02-08 08:59 ./usr/share/doc/
-drwxr-xr-x root/root 0 2011-02-08 08:59 ./usr/share/doc/bwa/
--rw-r--r-- root/root 5857 2011-01-25 00:00 ./usr/share/doc/bwa/NEWS.gz
--rw-r--r-- root/root 634 2011-01-25 00:00 ./usr/share/doc/bwa/README
--rw-r--r-- root/root 2676 2011-02-08 07:09 ./usr/share/doc/bwa/copyright
--rw-r--r-- root/root 17912 2011-01-25 00:00 ./usr/share/doc/bwa/changelog.gz
--rw-r--r-- root/root 17912 2011-01-25 00:00 ./usr/share/doc/bwa/ChangeLog.gz
--rw-r--r-- root/root 881 2011-02-08 07:11 ./usr/share/doc/bwa/changelog.Debian.gz
-drwxr-xr-x root/root 0 2011-02-08 08:59 ./usr/share/man/
-drwxr-xr-x root/root 0 2011-02-08 08:59 ./usr/share/man/man1/
--rw-r--r-- root/root 7554 2011-02-08 08:59 ./usr/share/man/man1/bwa.1.gz
-drwxr-xr-x root/root 0 2011-02-08 08:59 ./usr/share/bwa/
+drwxr-xr-x root/root 0 2011-03-12 07:40 ./
+drwxr-xr-x root/root 0 2011-03-12 07:40 ./usr/
+drwxr-xr-x root/root 0 2011-03-12 07:40 ./usr/share/
+drwxr-xr-x root/root 0 2011-03-12 07:40 ./usr/share/bwa/
-rwxr-xr-x root/root 3176 2011-01-25 00:00 ./usr/share/bwa/solid2fastq.pl
-rwxr-xr-x root/root 616 2011-01-25 00:00 ./usr/share/bwa/qualfa2fq.pl
-drwxr-xr-x root/root 0 2011-02-08 08:59 ./usr/bin/
--rwxr-xr-x root/root 422872 2011-02-08 08:59 ./usr/bin/bwa
+drwxr-xr-x root/root 0 2011-03-12 07:40 ./usr/share/doc/
+drwxr-xr-x root/root 0 2011-03-12 07:40 ./usr/share/doc/bwa/
+-rw-r--r-- root/root 634 2011-01-25 00:00 ./usr/share/doc/bwa/README
+-rw-r--r-- root/root 17912 2011-01-25 00:00 ./usr/share/doc/bwa/ChangeLog.gz
+-rw-r--r-- root/root 17912 2011-01-25 00:00 ./usr/share/doc/bwa/changelog.gz
+-rw-r--r-- root/root 2676 2011-02-08 07:09 ./usr/share/doc/bwa/copyright
+-rw-r--r-- root/root 5857 2011-01-25 00:00 ./usr/share/doc/bwa/NEWS.gz
+-rw-r--r-- root/root 957 2011-03-11 21:54 ./usr/share/doc/bwa/changelog.Debian.gz
+drwxr-xr-x root/root 0 2011-03-12 07:40 ./usr/share/man/
+drwxr-xr-x root/root 0 2011-03-12 07:40 ./usr/share/man/man1/
+-rw-r--r-- root/root 7554 2011-03-12 07:40 ./usr/share/man/man1/bwa.1.gz
+drwxr-xr-x root/root 0 2011-03-12 07:40 ./usr/bin/
+-rwxr-xr-x root/root 422872 2011-03-12 07:40 ./usr/bin/bwa
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -405,32 +433,9 @@ drwxr-xr-x root/root 0 2011-02-08 08:59 ./usr/bin/
Built successfully
────────────────────────────────────────────────────────────────────────────────
-Purging /var/lib/schroot/mount/sid-ia64-sbuild-7b6e40ef-fd0d-4cc6-b286-8894c01872bf/build/buildd-bwa_0.5.9-1-ia64-mYX4RF
-(Reading database ... 11610 files and directories currently installed.)
-Removing zlib1g-dev ...
-Removing cdbs ...
-Removing debhelper ...
-Removing po-debconf ...
-Removing intltool-debian ...
-Removing gettext ...
-Removing html2text ...
-Purging configuration files for html2text ...
-Removing gettext-base ...
-Removing man-db ...
-Purging configuration files for man-db ...
-Removing libunistring0 ...
-Purging configuration files for libunistring0 ...
-Removing groff-base ...
-Purging configuration files for groff-base ...
-Removing libcroco3 ...
-Purging configuration files for libcroco3 ...
-Removing libxml2 ...
-Purging configuration files for libxml2 ...
-Removing libglib2.0-0 ...
-Purging configuration files for libglib2.0-0 ...
-Removing libpcre3 ...
-Purging configuration files for libpcre3 ...
+Purging /var/lib/schroot/mount/sid-ia64-sbuild-23704d2e-73ef-4e38-b692-16977a849610/build/buildd-bwa_0.5.9-2-ia64-GfsQMB
+Not removing build depends: cloned chroot in use
────────────────────────────────────────────────────────────────────────────────
-Finished at 20110208-0859
-Build needed 00:01:17, 3636k disc space
+Finished at 20110312-0740
+Build needed 00:02:23, 3636k disc space
diff --git a/info b/info
index 1eaf64d..ee6f53f 100644
--- a/info
+++ b/info
@@ -1,13 +1,13 @@
-ia64~1297155605~sid~successful
-i386~1297155622~sid~successful
-kfreebsd-amd64~1297155831~sid~successful
-powerpc~1297155837~sid~successful
-kfreebsd-i386~1297155935~sid~successful
-hurd-i386~1297156521~sid~successful
-hppa~1297159466~sid~successful
-alpha~1297163981~sid~successful
-armel~1297164138~sid~successful
-mipsel~1297172751~sid~successful
-sparc~1297173593~sid~successful
-s390~1297197328~sid~successful
-mips~1297414295~sid~successful
+powerpc~1299914910~sid~successful
+i386~1299914917~sid~successful
+kfreebsd-i386~1299915588~sid~successful
+ia64~1299915648~sid~successful
+s390~1299915720~sid~successful
+kfreebsd-amd64~1299915958~sid~successful
+alpha~1299916748~sid~successful
+mipsel~1299917420~sid~successful
+hurd-i386~1299918873~sid~successful
+sparc~1299919173~sid~successful
+armel~1299948172~sid~successful
+mips~1299979901~sid~successful
+hppa~1299989133~sid~successful
diff --git a/kfreebsd-amd64.log b/kfreebsd-amd64.log
index c42623f..2cce5e0 100644
--- a/kfreebsd-amd64.log
+++ b/kfreebsd-amd64.log
@@ -1,4 +1,4 @@
-From buildd at fano.debian.org Tue Feb 08 09:03:51 2011
+From buildd at fano.debian.org Sat Mar 12 07:45:57 2011
Return-path: <buildd at fano.debian.org>
Received: from merikanto.debian.org ([2001:858:2:2:216:35ff:fec4:a49a])
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-Date: Tue, 08 Feb 2011 09:03:46 +0000
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+ id 1PyJWJ-000I1X-5G; Sat, 12 Mar 2011 07:45:51 +0000
+Date: Sat, 12 Mar 2011 07:45:51 +0000
+Message-Id: <E1PyJWJ-000I1X-5G at fano.debian.org>
From: buildd on fano <buildd at fano.debian.org>
To: logs at buildd.debian.org,aurelien at aurel32.net,kibi at debian-ports.org
-Subject: Log for successful build of bwa_0.5.9-1 on kfreebsd-amd64 (dist=sid)
+Subject: Log for successful build of bwa_0.5.9-2 on kfreebsd-amd64 (dist=sid)
Content-Type: text/plain; charset=UTF-8
Content-Transfer-Encoding: 8bit
Delivered-To: logs at buildd.debian.org
@@ -29,43 +29,41 @@ Delivered-To: logs at buildd.debian.org
sbuild (Debian sbuild) 0.60.0 (23 Feb 2010) on fano.debian.org
╔══════════════════════════════════════════════════════════════════════════════╗
-║ bwa 0.5.9-1 (kfreebsd-amd64) 08 Feb 2011 09:02 ║
+║ bwa 0.5.9-2 (kfreebsd-amd64) 12 Mar 2011 07:44 ║
╚══════════════════════════════════════════════════════════════════════════════╝
Package: bwa
-Version: 0.5.9-1
+Version: 0.5.9-2
Architecture: kfreebsd-amd64
-Chroot Build Dir: /var/lib/schroot/mount/sid-ka-sbuild-1297155760-27067/build/buildd-bwa_0.5.9-1-kfreebsd-amd64-96K9Uy
-Start Time: 20110208-0902
-Hit http://ftp.ca.debian.org sid Release.gpg
-Get:1 http://incoming.debian.org sid Release.gpg [835 B]
-Ign http://incoming.debian.org/debian/ sid/contrib Translation-en
-Ign http://incoming.debian.org/debian/ sid/main Translation-en
-Ign http://ftp.ca.debian.org/debian/ sid/main Translation-en
-Ign http://incoming.debian.org/debian/ sid/non-free Translation-en
-Get:2 http://incoming.debian.org Release.gpg [835 B]
-Ign http://incoming.debian.org/buildd-unstable/ Translation-en
-Get:3 http://incoming.debian.org sid Release [104 kB]
-Hit http://ftp.ca.debian.org sid Release
+Chroot Build Dir: /var/lib/schroot/mount/sid-ka-sbuild-1299915889-68274/build/buildd-bwa_0.5.9-2-kfreebsd-amd64-IfGSc1
+Start Time: 20110312-0744
+Hit http://ftp.ca.debian.org sid InRelease
+Hit http://incoming.debian.org sid InRelease
+Ign http://incoming.debian.org InRelease
Hit http://ftp.ca.debian.org sid/main Sources/DiffIndex
-Get:4 http://incoming.debian.org Release [1604 B]
+Hit http://incoming.debian.org Release.gpg
+Hit http://incoming.debian.org sid/main Sources/DiffIndex
Hit http://ftp.ca.debian.org sid/main kfreebsd-amd64 Packages/DiffIndex
-Get:5 http://incoming.debian.org sid/main Sources/DiffIndex [2038 B]
+Hit http://ftp.ca.debian.org sid/main TranslationIndex
Hit http://incoming.debian.org sid/contrib Sources/DiffIndex
Hit http://incoming.debian.org sid/non-free Sources/DiffIndex
-Get:6 http://incoming.debian.org sid/main kfreebsd-amd64 Packages/DiffIndex [2038 B]
+Hit http://incoming.debian.org sid/main kfreebsd-amd64 Packages/DiffIndex
Hit http://incoming.debian.org sid/contrib kfreebsd-amd64 Packages/DiffIndex
Hit http://incoming.debian.org sid/non-free kfreebsd-amd64 Packages/DiffIndex
-Get:7 http://incoming.debian.org Sources [43.1 kB]
-Get:8 http://incoming.debian.org Packages [680 kB]
-Get:9 http://incoming.debian.org sid/main 2011-02-08-0812.10.pdiff [3472 B]
-Get:10 http://incoming.debian.org sid/main kfreebsd-amd64 2011-02-08-0812.10.pdiff [35.8 kB]
+Ign http://incoming.debian.org sid/contrib TranslationIndex
+Hit http://incoming.debian.org sid/main TranslationIndex
+Ign http://incoming.debian.org sid/non-free TranslationIndex
+Hit http://incoming.debian.org Release
+Ign http://incoming.debian.org sid/main 2011-03-12-0214.38.pdiff
+Ign http://incoming.debian.org sid/main kfreebsd-amd64 2011-03-12-0214.38.pdiff
Hit http://incoming.debian.org sid/non-free kfreebsd-amd64 Packages
-Get:11 http://incoming.debian.org sid/main 2011-02-08-0812.10.pdiff [3472 B]
-Get:12 http://incoming.debian.org sid/main 2011-02-08-0812.10.pdiff [3472 B]
-Get:13 http://incoming.debian.org sid/main kfreebsd-amd64 2011-02-08-0812.10.pdiff [35.8 kB]
-Get:14 http://incoming.debian.org sid/main kfreebsd-amd64 2011-02-08-0812.10.pdiff [35.8 kB]
-Fetched 873 kB in 7s (118 kB/s)
+Hit http://incoming.debian.org sid/main
+Hit http://incoming.debian.org sid/main kfreebsd-amd64
+Hit http://incoming.debian.org Sources
+Hit http://incoming.debian.org Packages
+Ign http://incoming.debian.org sid/contrib Translation-en
+Ign http://incoming.debian.org sid/non-free Translation-en
+Ign http://incoming.debian.org Translation-en
Reading package lists...
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -87,54 +85,55 @@ Reading state information...
NOTICE: 'bwa' packaging is maintained in the 'Git' version control system at:
git://git.debian.org/git/debian-med/bwa.git
Need to get 119 kB of source archives.
-Get:1 http://incoming.debian.org/buildd-unstable/ bwa 0.5.9-1 (dsc) [1894 B]
-Get:2 http://incoming.debian.org/buildd-unstable/ bwa 0.5.9-1 (tar) [114 kB]
-Get:3 http://incoming.debian.org/buildd-unstable/ bwa 0.5.9-1 (diff) [3651 B]
-Fetched 119 kB in 0s (145 kB/s)
+Get:1 http://incoming.debian.org/buildd-unstable/ bwa 0.5.9-2 (dsc) [1245 B]
+Get:2 http://incoming.debian.org/buildd-unstable/ bwa 0.5.9-2 (tar) [114 kB]
+Get:3 http://incoming.debian.org/buildd-unstable/ bwa 0.5.9-2 (diff) [3828 B]
+Fetched 119 kB in 0s (142 kB/s)
Download complete and in download only mode
Check arch
──────────
** Using build dependencies supplied by package:
-Build-Depends: cdbs, debhelper (>= 8), zlib1g-dev
+Build-Depends: debhelper (>= 8), zlib1g-dev
┌──────────────────────────────────────────────────────────────────────────────┐
│ Install build dependencies (internal resolver) │
└──────────────────────────────────────────────────────────────────────────────┘
Checking for already installed source dependencies...
-cdbs: missing
debhelper: missing
-Using default version 8.1.0
+Using default version 8.1.2
zlib1g-dev: missing
Checking for source dependency conflicts...
-Installing positive dependencies: cdbs debhelper zlib1g-dev
+Installing positive dependencies: debhelper zlib1g-dev
Reading package lists...
Building dependency tree...
Reading state information...
The following extra packages will be installed:
file gettext gettext-base groff-base html2text intltool-debian libcroco3
- libglib2.0-0 libmagic1 libpcre3 libunistring0 libxml2 man-db po-debconf
+ libglib2.0-0 libmagic1 libpcre3 libpipeline1 libunistring0 libxml2 man-db
+ po-debconf
Suggested packages:
- devscripts doc-base dh-make gettext-doc groff less www-browser
- libmail-box-perl
+ dh-make gettext-doc groff less www-browser libmail-box-perl
Recommended packages:
-debconf: delaying package configuration, since apt-utils is not installed
- autotools-dev curl wget lynx-cur autopoint libglib2.0-data shared-mime-info
- xml-core libmail-sendmail-perl
+ curl wget lynx-cur autopoint libglib2.0-data shared-mime-info xml-core
+ libmail-sendmail-perl
The following NEW packages will be installed:
- cdbs debhelper file gettext gettext-base groff-base html2text
- intltool-debian libcroco3 libglib2.0-0 libmagic1 libpcre3 libunistring0
- libxml2 man-db po-debconf zlib1g-dev
-0 upgraded, 17 newly installed, 0 to remove and 2 not upgraded.
-Need to get 0 B/10.3 MB of archives.
-After this operation, 27.1 MB of additional disk space will be used.
+ debhelper file gettext gettext-base groff-base html2text intltool-debian
+ libcroco3 libglib2.0-0 libmagic1 libpcre3 libpipeline1 libunistring0 libxml2
+ man-db po-debconf zlib1g-dev
+debconf: delaying package configuration, since apt-utils is not installed
+0 upgraded, 17 newly installed, 0 to remove and 8 not upgraded.
+Need to get 0 B/9105 kB of archives.
+After this operation, 25.5 MB of additional disk space will be used.
Selecting previously deselected package groff-base.
-(Reading database ... 11819 files and directories currently installed.)
-Unpacking groff-base (from .../groff-base_1.20.1-10_kfreebsd-amd64.deb) ...
+(Reading database ... 11934 files and directories currently installed.)
+Unpacking groff-base (from .../groff-base_1.21-4_kfreebsd-amd64.deb) ...
+Selecting previously deselected package libpipeline1.
+Unpacking libpipeline1 (from .../libpipeline1_1.1.0-1_kfreebsd-amd64.deb) ...
Selecting previously deselected package man-db.
-Unpacking man-db (from .../man-db_2.5.7-8_kfreebsd-amd64.deb) ...
+Unpacking man-db (from .../man-db_2.5.9-4_kfreebsd-amd64.deb) ...
Selecting previously deselected package libmagic1.
Unpacking libmagic1 (from .../libmagic1_5.04-5_kfreebsd-amd64.deb) ...
Selecting previously deselected package file.
@@ -142,13 +141,13 @@ Unpacking file (from .../file_5.04-5_kfreebsd-amd64.deb) ...
Selecting previously deselected package gettext-base.
Unpacking gettext-base (from .../gettext-base_0.18.1.1-3_kfreebsd-amd64.deb) ...
Selecting previously deselected package libpcre3.
-Unpacking libpcre3 (from .../libpcre3_8.12-1_kfreebsd-amd64.deb) ...
+Unpacking libpcre3 (from .../libpcre3_8.12-3_kfreebsd-amd64.deb) ...
Selecting previously deselected package libxml2.
Unpacking libxml2 (from .../libxml2_2.7.8.dfsg-2_kfreebsd-amd64.deb) ...
Selecting previously deselected package html2text.
Unpacking html2text (from .../html2text_1.3.2a-15_kfreebsd-amd64.deb) ...
Selecting previously deselected package libglib2.0-0.
-Unpacking libglib2.0-0 (from .../libglib2.0-0_2.24.2-1_kfreebsd-amd64.deb) ...
+Unpacking libglib2.0-0 (from .../libglib2.0-0_2.28.1-1+b1_kfreebsd-amd64.deb) ...
Selecting previously deselected package libcroco3.
Unpacking libcroco3 (from .../libcroco3_0.6.2-1_kfreebsd-amd64.deb) ...
Selecting previously deselected package libunistring0.
@@ -160,34 +159,33 @@ Unpacking intltool-debian (from .../intltool-debian_0.35.0+20060710.1_all.deb) .
Selecting previously deselected package po-debconf.
Unpacking po-debconf (from .../po-debconf_1.0.16+nmu1_all.deb) ...
Selecting previously deselected package debhelper.
-Unpacking debhelper (from .../debhelper_8.1.0_all.deb) ...
-Selecting previously deselected package cdbs.
-Unpacking cdbs (from .../archives/cdbs_0.4.89_all.deb) ...
+Unpacking debhelper (from .../debhelper_8.1.2_all.deb) ...
Selecting previously deselected package zlib1g-dev.
Unpacking zlib1g-dev (from .../zlib1g-dev_1%3a1.2.3.4.dfsg-3_kfreebsd-amd64.deb) ...
-Setting up groff-base (1.20.1-10) ...
-Setting up man-db (2.5.7-8) ...
+Setting up groff-base (1.21-4) ...
+Setting up libpipeline1 (1.1.0-1) ...
+Setting up man-db (2.5.9-4) ...
Building database of manual pages ...
Setting up libmagic1 (5.04-5) ...
Setting up file (5.04-5) ...
Setting up gettext-base (0.18.1.1-3) ...
-Setting up libpcre3 (8.12-1) ...
+Setting up libpcre3 (8.12-3) ...
Setting up libxml2 (2.7.8.dfsg-2) ...
Setting up html2text (1.3.2a-15) ...
-Setting up libglib2.0-0 (2.24.2-1) ...
+Setting up libglib2.0-0 (2.28.1-1+b1) ...
+No schema files found: doing nothing.
Setting up libcroco3 (0.6.2-1) ...
Setting up libunistring0 (0.9.3-3) ...
Setting up gettext (0.18.1.1-3) ...
Setting up intltool-debian (0.35.0+20060710.1) ...
Setting up po-debconf (1.0.16+nmu1) ...
-Setting up debhelper (8.1.0) ...
-Setting up cdbs (0.4.89) ...
+Setting up debhelper (8.1.2) ...
Setting up zlib1g-dev (1:1.2.3.4.dfsg-3) ...
Removing negative dependencies:
Checking correctness of source dependencies...
Kernel: GNU/kFreeBSD 8.1-1-amd64 kfreebsd-amd64 (x86_64)
-Toolchain package versions: libc6-dev_ =*=NOT INSTALLED=*= dpkg-dev_1.15.8.10 libstdc++6_4.4.5-10 gcc-4.4_4.4.5-10 g++-4.4_4.4.5-10 binutils_2.20.1-16 libstdc++6-4.4-dev_4.4.5-10 libc0.1-dev_2.11.2-11 kfreebsd-kernel-headers_0.53
-Package versions: apt_0.8.10.3 base-files_6.0 base-passwd_3.5.22 bash_4.1-3 binutils_2.20.1-16 bsdmainutils_8.2.2 bsdutils_1:2.17.2-9 build-essential_11.5 bzip2_1.0.5-6 cdbs_0.4.89 coreutils_8.5-1 cpio_2.11-6 cpp_4:4.4.5-2 cpp-4.4_4.4.5-10 dash_0.5.5.1-7.4 debconf_1.5.38 debconf-i18n_1.5.38 debfoster_2.7-1.1 debhelper_8.1.0 debian-archive-keyring_2010.08.28 debianutils_3.4.3+b1 diffutils_1:3.0-1 dpkg_1.15.8.10 dpkg-dev_1.15.8.10 e2fslibs_1.41.12-2 e2fsprogs_1.41.12-2 fakeroot_1.14.5-1+b1 file_5.04-5 findutils_4.4.2-1 freebsd-utils_8.1-4+b1 g++_4:4.4.5-2 g++-4.4_4.4.5-10 gcc_4:4.4.5-2 gcc-4.2-base_4.2.4-6 gcc-4.4_4.4.5-10 gcc-4.4-base_4.4.5-10 gettext_0.18.1.1-3 gettext-base_0.18.1.1-3 gnupg_1.4.10-4 gpgv_1.4.10-4 grep_2.6.3-3 groff-base_1.20.1-10 gzip_1.3.12-9 hostname_3.05 html2text_1.3.2a-15 initscripts_2.88dsf-13.1 insserv_1.14.0-2 intltool-debian_0.35.0+20060710.1 kfreebsd-kernel-headers_0.53 libacl1_2.2.49-4 libattr1_1:2.4.44-2 libblkid1_2.17.2-9 libbsd0_0.2.0-1 libbz2-1.0_1.0.5-6 libc-bin_2.11.2-11 libc-dev-bin_2.11.2-11 libc0.1_2.11.2-11 libc0.1-dev_2.11.2-11 libcam0_8.1-5 libcomerr2_1.41.12-2 libcroco3_0.6.2-1 libdb4.7_4.7.25-12 libdb4.8_4.8.30-4 libdpkg-perl_1.15.8.10 libedit2_2.11-20080614-2 libexpat1_2.0.1-7 libgc1c2_1:6.8-1.2 libgcc1_1:4.4.5-10 libgcrypt11_1.4.5-2 libgdbm3_1.8.3-9 libgeom0_8.1-5 libglib2.0-0_2.24.2-1 libgmp3c2_2:4.3.2+dfsg-1 libgnutls26_2.10.4-2 libgomp1_4.4.5-10 libgpg-error0_1.10-0.3 libkiconv4_8.1-5 libkvm0_8.1-5 libldap-2.4-2_2.4.23-7 liblocale-gettext-perl_1.05-6 liblzma2_5.0.0-2 libmagic1_5.04-5 libmpfr4_3.0.0-2 libncurses5_5.7+20100313-5 libncursesw5_5.7+20100313-5 libpam-modules_1.1.1-6.1 libpam-runtime_1.1.1-6.1 libpam0g_1.1.1-6.1 libpcre3_8.12-1 libpng12-0_1.2.44-1 libreadline6_6.1-3 libsasl2-2_2.1.23.dfsg1-7 libsbuf0_8.1-5 libslang2_2.2.2-4 libss2_1.41.12-2 libstdc++6_4.4.5-10 libstdc++6-4.4-dev_4.4.5-10 libtasn1-3_2.7-1 libtext-charwidth-perl_0.04-6 libtext-iconv-perl_1.7-2 libtext-wrapi18n-perl_0.06-7 libtimedate-perl_1.2000-1 libunistring0_0.9.3-3 libusb-0.1-4_2:0.1.12-17 libuuid1_2.17.2-9 libxml2_2.7.8.dfsg-2 login_1:4.1.4.2+svn3283-2 lsb-base_3.2-27 lzma_4.43-14 make_3.81-8 man-db_2.5.7-8 mawk_1.3.3-15 ncurses-base_5.7+20100313-5 ncurses-bin_5.7+20100313-5 passwd_1:4.1.4.2+svn3283-2 patch_2.6-3 perl_5.10.1-17 perl-base_5.10.1-17 perl-modules_5.10.1-17 po-debconf_1.0.16+nmu1 procps_1:3.2.8-10 psmisc_22.13-1 readline-common_6.1-3 sed_4.2.1-8 sensible-utils_0.0.6 sudo_1.7.4p4-6 sysv-rc_2.88dsf-13.1 sysvinit_2.88dsf-13.1 sysvinit-utils_2.88dsf-13.1 tar_1.25-3 type-handling_0.2.23 tzdata_2011a-1 ufsutils_7.3-1+b1 util-linux_2.17.2-9 xz-utils_5.0.0-2 zlib1g_1:1.2.3.4.dfsg-3 zlib1g-dev_1:1.2.3.4.dfsg-3
+Toolchain package versions: libc6-dev_ =*=NOT INSTALLED=*= dpkg-dev_1.15.8.10 libstdc++6_4.5.2-5 gcc-4.5_4.5.2-5 g++-4.5_4.5.2-5 binutils_2.21.0.20110302-1 libstdc++6-4.5-dev_4.5.2-5 libc0.1-dev_2.11.2-13 kfreebsd-kernel-headers_0.53
+Package versions: apt_0.8.11.5 base-files_6.1 base-passwd_3.5.22 bash_4.1-3 binutils_2.21.0.20110302-1 bsdmainutils_8.2.2 bsdutils_1:2.17.2-9.1 build-essential_11.5 bzip2_1.0.5-6 coreutils_8.5-1 cpio_2.11-7 cpp_4:4.5.2-2 cpp-4.5_4.5.2-5 dash_0.5.5.1-7.4 debconf_1.5.38 debconf-i18n_1.5.38 debfoster_2.7-1.1 debhelper_8.1.2 debian-archive-keyring_2010.08.28 debianutils_3.4.4 diffutils_1:3.0-1 dpkg_1.15.8.10 dpkg-dev_1.15.8.10 e2fslibs_1.41.12-2 e2fsprogs_1.41.12-2 fakeroot_1.14.5-1+b1 file_5.04-5 findutils_4.4.2-1 freebsd-utils_8.1-4+b1 g++_4:4.5.2-1 g++-4.5_4.5.2-5 gcc_4:4.5.2-2 gcc-4.2-base_4.2.4-6 gcc-4.4-base_4.4.5-13 gcc-4.5_4.5.2-5 gcc-4.5-base_4.5.2-5 gettext_0.18.1.1-3 gettext-base_0.18.1.1-3 gnupg_1.4.11-3 gpgv_1.4.11-3 grep_2.6.3-3 groff-base_1.21-4 gzip_1.3.12-9 hostname_3.05 html2text_1.3.2a-15 initscripts_2.88dsf-13.1 insserv_1.14.0-2 intltool-debian_0.35.0+20060710.1 kfreebsd-kernel-headers_0.53 libacl1_2.2.49-4 libattr1_1:2.4.44-2 libblkid1_2.17.2-9.1 libbsd0_0.2.0-1 libbz2-1.0_1.0.5-6 libc-bin_2.11.2-13 libc-dev-bin_2.11.2-13 libc0.1_2.11.2-13 libc0.1-dev_2.11.2-13 libcam0_8.1-5 libcloog-ppl0_0.15.9-2 libcomerr2_1.41.12-2 libcroco3_0.6.2-1 libdb4.7_4.7.25-12 libdb4.8_4.8.30-5 libdpkg-perl_1.15.8.10 libedit2_2.11-20080614-2 libelfg0_0.8.13-1 libexpat1_2.0.1-7 libgc1c2_1:7.1-7 libgcc1_1:4.5.2-5 libgcrypt11_1.4.6-5 libgdbm3_1.8.3-9 libgeom0_8.1-5 libglib2.0-0_2.28.1-1+b1 libgmp10_2:5.0.1+dfsg-6 libgmp3c2_2:4.3.2+dfsg-1 libgmpxx4ldbl_2:5.0.1+dfsg-6 libgnutls26_2.10.5-1 libgomp1_4.5.2-5 libgpg-error0_1.10-0.3 libkiconv4_8.1-5 libkvm0_8.1-5 libldap-2.4-2_2.4.23-7 liblocale-gettext-perl_1.05-6 liblzma2_5.0.0-2 libmagic1_5.04-5 libmpc2_0.9-1 libmpfr4_3.0.0-9 libncurses5_5.8+20110307-1 libncursesw5_5.8+20110307-1 libpam-modules_1.1.2-2 libpam-runtime_1.1.2-2 libpam0g_1.1.2-2 libpcre3_8.12-3 libpipeline1_1.1.0-1 libpng12-0_1.2.44-1 libppl-c2_0.10.2-8 libppl7_0.10.2-8 libreadline6_6.1-3 libsasl2-2_2.1.23.dfsg1-7 libsbuf0_8.1-5 libslang2_2.2.2-4 libss2_1.41.12-2 libstdc++6_4.5.2-5 libstdc++6-4.5-dev_4.5.2-5 libtasn1-3_2.9-2 libtext-charwidth-perl_0.04-6 libtext-iconv-perl_1.7-2 libtext-wrapi18n-perl_0.06-7 libtimedate-perl_1.2000-1 libunistring0_0.9.3-3 libusb-0.1-4_2:0.1.12-17 libuuid1_2.17.2-9.1 libxml2_2.7.8.dfsg-2 login_1:4.1.4.2+svn3283-3 lsb-base_3.2-27 lzma_4.43-14 make_3.81-8 man-db_2.5.9-4 mawk_1.3.3-15 ncurses-base_5.7+20100313-5 ncurses-bin_5.8+20110307-1 passwd_1:4.1.4.2+svn3283-3 patch_2.6.1-1 perl_5.10.1-17 perl-base_5.10.1-17 perl-modules_5.10.1-17 po-debconf_1.0.16+nmu1 procps_1:3.2.8-10 psmisc_22.13-1 readline-common_6.1-3 sed_4.2.1-9 sensible-utils_0.0.6 sudo_1.7.4p6-1 sysv-rc_2.88dsf-13.1 sysvinit_2.88dsf-13.1 sysvinit-utils_2.88dsf-13.1 tar_1.25-3 type-handling_0.2.23 tzdata_2011b-2 ufsutils_7.3-1+b1 util-linux_2.17.2-9.1 xz-utils_5.0.0-2 zlib1g_1:1.2.3.4.dfsg-3 zlib1g-dev_1:1.2.3.4.dfsg-3
┌──────────────────────────────────────────────────────────────────────────────┐
│ Build │
@@ -199,12 +197,12 @@ Unpack source
dpkg-source: warning: -sn is not a valid option for Dpkg::Source::Package::V3::quilt
gpgv: keyblock resource `/home/buildd/.gnupg/trustedkeys.gpg': file open error
-gpgv: Signature made Tue Feb 8 07:20:43 2011 UTC using RSA key ID 2295D502
+gpgv: Signature made Fri Mar 11 21:59:41 2011 UTC using DSA key ID C09FD35A
gpgv: Can't check signature: public key not found
-dpkg-source: warning: failed to verify signature on ./bwa_0.5.9-1.dsc
+dpkg-source: warning: failed to verify signature on ./bwa_0.5.9-2.dsc
dpkg-source: info: extracting bwa in bwa-0.5.9
dpkg-source: info: unpacking bwa_0.5.9.orig.tar.bz2
-dpkg-source: info: unpacking bwa_0.5.9-1.debian.tar.gz
+dpkg-source: info: unpacking bwa_0.5.9-2.debian.tar.gz
Check disc space
────────────────
@@ -219,157 +217,158 @@ dpkg-buildpackage: export CXXFLAGS from dpkg-buildflags (origin: vendor): -g -O2
dpkg-buildpackage: export FFLAGS from dpkg-buildflags (origin: vendor): -g -O2
dpkg-buildpackage: export LDFLAGS from dpkg-buildflags (origin: vendor):
dpkg-buildpackage: source package bwa
-dpkg-buildpackage: source version 0.5.9-1
+dpkg-buildpackage: source version 0.5.9-2
dpkg-source --before-build bwa-0.5.9
dpkg-buildpackage: host architecture kfreebsd-amd64
/usr/bin/fakeroot debian/rules clean
-test -x debian/rules
-dh_testroot
-rm -f debian/stamp-makefile-build debian/stamp-makefile-install
-/usr/bin/make -C . CFLAGS="-g -O2 -g -Wall -O2" CXXFLAGS="-g -O2 -g -Wall -O2" CPPFLAGS="" LDFLAGS="" -k clean
-make[1]: Entering directory `/build/buildd-bwa_0.5.9-1-kfreebsd-amd64-96K9Uy/bwa-0.5.9'
-make[2]: Entering directory `/build/buildd-bwa_0.5.9-1-kfreebsd-amd64-96K9Uy/bwa-0.5.9'
+dh clean
+ dh_testdir
+ dh_auto_clean
+make[1]: Entering directory `/build/buildd-bwa_0.5.9-2-kfreebsd-amd64-IfGSc1/bwa-0.5.9'
+make[2]: Entering directory `/build/buildd-bwa_0.5.9-2-kfreebsd-amd64-IfGSc1/bwa-0.5.9'
rm -f gmon.out *.o a.out bwa *~ *.a
-make[2]: Leaving directory `/build/buildd-bwa_0.5.9-1-kfreebsd-amd64-96K9Uy/bwa-0.5.9'
-make[2]: Entering directory `/build/buildd-bwa_0.5.9-1-kfreebsd-amd64-96K9Uy/bwa-0.5.9/bwt_gen'
+make[2]: Leaving directory `/build/buildd-bwa_0.5.9-2-kfreebsd-amd64-IfGSc1/bwa-0.5.9'
+make[2]: Entering directory `/build/buildd-bwa_0.5.9-2-kfreebsd-amd64-IfGSc1/bwa-0.5.9/bwt_gen'
rm -f gmon.out *.o a.out *~ *.a
-make[2]: Leaving directory `/build/buildd-bwa_0.5.9-1-kfreebsd-amd64-96K9Uy/bwa-0.5.9/bwt_gen'
-make[1]: Leaving directory `/build/buildd-bwa_0.5.9-1-kfreebsd-amd64-96K9Uy/bwa-0.5.9'
-dh_clean
+make[2]: Leaving directory `/build/buildd-bwa_0.5.9-2-kfreebsd-amd64-IfGSc1/bwa-0.5.9/bwt_gen'
+make[1]: Leaving directory `/build/buildd-bwa_0.5.9-2-kfreebsd-amd64-IfGSc1/bwa-0.5.9'
+ dh_clean
debian/rules build
-test -x debian/rules
-mkdir -p "."
-/usr/bin/make -C . CFLAGS="-g -O2 -g -Wall -O2" CXXFLAGS="-g -O2 -g -Wall -O2" CPPFLAGS="" LDFLAGS=""
-make[1]: Entering directory `/build/buildd-bwa_0.5.9-1-kfreebsd-amd64-96K9Uy/bwa-0.5.9'
-make[2]: Entering directory `/build/buildd-bwa_0.5.9-1-kfreebsd-amd64-96K9Uy/bwa-0.5.9'
+dh build
+ dh_testdir
+ dh_auto_configure
+ dh_auto_build
+make[1]: Entering directory `/build/buildd-bwa_0.5.9-2-kfreebsd-amd64-IfGSc1/bwa-0.5.9'
+make[2]: Entering directory `/build/buildd-bwa_0.5.9-2-kfreebsd-amd64-IfGSc1/bwa-0.5.9'
make[2]: Nothing to be done for `lib'.
-make[2]: Leaving directory `/build/buildd-bwa_0.5.9-1-kfreebsd-amd64-96K9Uy/bwa-0.5.9'
-make[2]: Entering directory `/build/buildd-bwa_0.5.9-1-kfreebsd-amd64-96K9Uy/bwa-0.5.9/bwt_gen'
-gcc -c -g -O2 -g -Wall -O2 -DHAVE_PTHREAD bwt_gen.c -o bwt_gen.o
-gcc -c -g -O2 -g -Wall -O2 -DHAVE_PTHREAD QSufSort.c -o QSufSort.o
+make[2]: Leaving directory `/build/buildd-bwa_0.5.9-2-kfreebsd-amd64-IfGSc1/bwa-0.5.9'
+make[2]: Entering directory `/build/buildd-bwa_0.5.9-2-kfreebsd-amd64-IfGSc1/bwa-0.5.9/bwt_gen'
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD bwt_gen.c -o bwt_gen.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD QSufSort.c -o QSufSort.o
ar -cru libbwtgen.a bwt_gen.o QSufSort.o
-make[2]: Leaving directory `/build/buildd-bwa_0.5.9-1-kfreebsd-amd64-96K9Uy/bwa-0.5.9/bwt_gen'
-gcc -c -g -O2 -g -Wall -O2 -DHAVE_PTHREAD utils.c -o utils.o
-gcc -c -g -O2 -g -Wall -O2 -DHAVE_PTHREAD bwt.c -o bwt.o
-gcc -c -g -O2 -g -Wall -O2 -DHAVE_PTHREAD bwtio.c -o bwtio.o
-gcc -c -g -O2 -g -Wall -O2 -DHAVE_PTHREAD bwtaln.c -o bwtaln.o
-gcc -c -g -O2 -g -Wall -O2 -DHAVE_PTHREAD bwtgap.c -o bwtgap.o
-gcc -c -g -O2 -g -Wall -O2 -DHAVE_PTHREAD is.c -o is.o
-gcc -c -g -O2 -g -Wall -O2 -DHAVE_PTHREAD bntseq.c -o bntseq.o
-gcc -c -g -O2 -g -Wall -O2 -DHAVE_PTHREAD bwtmisc.c -o bwtmisc.o
-gcc -c -g -O2 -g -Wall -O2 -DHAVE_PTHREAD bwtindex.c -o bwtindex.o
-gcc -c -g -O2 -g -Wall -O2 -DHAVE_PTHREAD stdaln.c -o stdaln.o
-gcc -c -g -O2 -g -Wall -O2 -DHAVE_PTHREAD simple_dp.c -o simple_dp.o
-gcc -c -g -O2 -g -Wall -O2 -DHAVE_PTHREAD bwaseqio.c -o bwaseqio.o
-gcc -c -g -O2 -g -Wall -O2 -DHAVE_PTHREAD bwase.c -o bwase.o
-gcc -c -g -O2 -g -Wall -O2 -DHAVE_PTHREAD bwape.c -o bwape.o
-gcc -c -g -O2 -g -Wall -O2 -DHAVE_PTHREAD kstring.c -o kstring.o
-gcc -c -g -O2 -g -Wall -O2 -DHAVE_PTHREAD cs2nt.c -o cs2nt.o
-gcc -c -g -O2 -g -Wall -O2 -DHAVE_PTHREAD bwtsw2_core.c -o bwtsw2_core.o
-gcc -c -g -O2 -g -Wall -O2 -DHAVE_PTHREAD bwtsw2_main.c -o bwtsw2_main.o
-gcc -c -g -O2 -g -Wall -O2 -DHAVE_PTHREAD bwtsw2_aux.c -o bwtsw2_aux.o
-gcc -c -g -O2 -g -Wall -O2 -DHAVE_PTHREAD bwt_lite.c -o bwt_lite.o
-gcc -c -g -O2 -g -Wall -O2 -DHAVE_PTHREAD bwtsw2_chain.c -o bwtsw2_chain.o
-gcc -c -g -O2 -g -Wall -O2 -DHAVE_PTHREAD bamlite.c -o bamlite.o
-gcc -c -g -O2 -g -Wall -O2 -DHAVE_PTHREAD main.c -o main.o
-gcc -g -O2 -g -Wall -O2 -DHAVE_PTHREAD utils.o bwt.o bwtio.o bwtaln.o bwtgap.o is.o bntseq.o bwtmisc.o bwtindex.o stdaln.o simple_dp.o bwaseqio.o bwase.o bwape.o kstring.o cs2nt.o bwtsw2_core.o bwtsw2_main.o bwtsw2_aux.o bwt_lite.o bwtsw2_chain.o bamlite.o main.o -o bwa -lm -lz -lpthread -Lbwt_gen -lbwtgen
-make[1]: Leaving directory `/build/buildd-bwa_0.5.9-1-kfreebsd-amd64-96K9Uy/bwa-0.5.9'
-touch debian/stamp-makefile-build
-DEB_MAKE_CHECK_TARGET unset, not running checks
+make[2]: Leaving directory `/build/buildd-bwa_0.5.9-2-kfreebsd-amd64-IfGSc1/bwa-0.5.9/bwt_gen'
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD utils.c -o utils.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD bwt.c -o bwt.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD bwtio.c -o bwtio.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD bwtaln.c -o bwtaln.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD bwtgap.c -o bwtgap.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD is.c -o is.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD bntseq.c -o bntseq.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD bwtmisc.c -o bwtmisc.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD bwtindex.c -o bwtindex.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD stdaln.c -o stdaln.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD simple_dp.c -o simple_dp.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD bwaseqio.c -o bwaseqio.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD bwase.c -o bwase.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD bwape.c -o bwape.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD kstring.c -o kstring.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD cs2nt.c -o cs2nt.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD bwtsw2_core.c -o bwtsw2_core.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD bwtsw2_main.c -o bwtsw2_main.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD bwtsw2_aux.c -o bwtsw2_aux.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD bwt_lite.c -o bwt_lite.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD bwtsw2_chain.c -o bwtsw2_chain.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD bamlite.c -o bamlite.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD main.c -o main.o
+gcc -g -Wall -O2 -DHAVE_PTHREAD utils.o bwt.o bwtio.o bwtaln.o bwtgap.o is.o bntseq.o bwtmisc.o bwtindex.o stdaln.o simple_dp.o bwaseqio.o bwase.o bwape.o kstring.o cs2nt.o bwtsw2_core.o bwtsw2_main.o bwtsw2_aux.o bwt_lite.o bwtsw2_chain.o bamlite.o main.o -o bwa -lm -lz -lpthread -Lbwt_gen -lbwtgen
+make[1]: Leaving directory `/build/buildd-bwa_0.5.9-2-kfreebsd-amd64-IfGSc1/bwa-0.5.9'
+ dh_auto_test
/usr/bin/fakeroot debian/rules binary-arch
-test -x debian/rules
-dh_testroot
-dh_prep
-dh_installdirs -A
-mkdir -p "."
-DEB_MAKE_CHECK_TARGET unset, not running checks
-DEB_MAKE_INSTALL_TARGET unset, skipping default makefile.mk common-install target
-Adding cdbs dependencies to debian/bwa.substvars
-dh_installdirs -pbwa
-dh_installdocs -pbwa ./README ./NEWS
-dh_installexamples -pbwa
-dh_installman -pbwa
-dh_installinfo -pbwa
-dh_installmenu -pbwa
-dh_installcron -pbwa
-dh_installinit -pbwa
-dh_installdebconf -pbwa
-dh_installemacsen -pbwa
-dh_installcatalogs -pbwa
-dh_installpam -pbwa
-dh_installlogrotate -pbwa
-dh_installlogcheck -pbwa
-dh_installchangelogs -pbwa ./ChangeLog
-dh_installudev -pbwa
-dh_lintian -pbwa
-dh_install -pbwa
-dh_link -pbwa
-dh_installmime -pbwa
-dh_strip -pbwa
-dh_compress -pbwa
-dh_fixperms -pbwa
-dh_makeshlibs -pbwa
-dh_installdeb -pbwa
-dh_perl -pbwa
-dh_shlibdeps -pbwa
-dh_gencontrol -pbwa
+dh binary-arch
+ dh_testroot -a
+ dh_prep -a
+ dh_installdirs -a
+ dh_auto_install -a
+ dh_install -a
+ dh_installdocs -a
+ dh_installchangelogs -a
+ dh_installexamples -a
+ dh_installman -a
+ dh_installcatalogs -a
+ dh_installcron -a
+ dh_installdebconf -a
+ dh_installemacsen -a
+ dh_installifupdown -a
+ dh_installinfo -a
+ dh_installinit -a
+ dh_installmenu -a
+ dh_installmime -a
+ dh_installmodules -a
+ dh_installlogcheck -a
+ dh_installlogrotate -a
+ dh_installpam -a
+ dh_installppp -a
+ dh_installudev -a
+ dh_installwm -a
+ dh_installxfonts -a
+ dh_bugfiles -a
+ dh_lintian -a
+ dh_gconf -a
+ dh_icons -a
+ dh_perl -a
+ dh_usrlocal -a
+ dh_link -a
+ dh_compress -a
+ dh_fixperms -a
+ dh_strip -a
+ dh_makeshlibs -a
+ dh_shlibdeps -a
+ dh_installdeb -a
+ dh_gencontrol -a
dpkg-gencontrol: warning: package bwa: unused substitution variable ${perl:Depends}
-dh_md5sums -pbwa
-dh_builddeb -pbwa
-dpkg-deb: building package `bwa' in `../bwa_0.5.9-1_kfreebsd-amd64.deb'.
- dpkg-genchanges -B -mkfreebsd-amd64 Build Daemon (fano) <buildd_kfreebsd-amd64-fano at buildd.debian.org> >../bwa_0.5.9-1_kfreebsd-amd64.changes
+ dh_md5sums -a
+ dh_builddeb -a
+dpkg-deb: building package `bwa' in `../bwa_0.5.9-2_kfreebsd-amd64.deb'.
+ dpkg-genchanges -B -mkfreebsd-amd64 Build Daemon (fano) <buildd_kfreebsd-amd64-fano at buildd.debian.org> >../bwa_0.5.9-2_kfreebsd-amd64.changes
dpkg-genchanges: arch-specific upload - not including arch-independent packages
dpkg-genchanges: binary-only upload - not including any source code
dpkg-source --after-build bwa-0.5.9
dpkg-buildpackage: binary only upload (no source included)
────────────────────────────────────────────────────────────────────────────────
-Build finished at 20110208-0903
+Build finished at 20110312-0745
-bwa_0.5.9-1_kfreebsd-amd64.changes:
+bwa_0.5.9-2_kfreebsd-amd64.changes:
Format: 1.8
-Date: Tue, 08 Feb 2011 16:11:12 +0900
+Date: Fri, 11 Mar 2011 22:49:07 +0100
Source: bwa
Binary: bwa
Architecture: kfreebsd-amd64
-Version: 0.5.9-1
+Version: 0.5.9-2
Distribution: sid
Urgency: low
Maintainer: kfreebsd-amd64 Build Daemon (fano) <buildd_kfreebsd-amd64-fano at buildd.debian.org>
-Changed-By: Charles Plessy <plessy at debian.org>
+Changed-By: Andreas Tille <tille at debian.org>
Description:
bwa - Burrows-Wheeler Aligner
Changes:
- bwa (0.5.9-1) unstable; urgency=low
+ bwa (0.5.9-2) unstable; urgency=low
.
- * New usptream release
- - Upstream moved to GitHub (debian/upstream-metadata.yaml).
- - Checked copyright; one file was removed (debian/copyright).
- * Migrated the Debian source package to Git (debian/control).
- * Use Debhelper 8 (debian/control, debian/compat).
+ * Watchfile should not regard rc releases.
+ * Drop cdbs in favour of dh
Checksums-Sha1:
- 0800bb7f5d51d07083d2b78243e729343fe087ca 137390 bwa_0.5.9-1_kfreebsd-amd64.deb
+ 499eddadd4caa774c1b7df789e988aaad6fbd018 140254 bwa_0.5.9-2_kfreebsd-amd64.deb
Checksums-Sha256:
- 95c5c011bb7d2c71d8d6cc9bfae79f280a8416ddf2aab533fe76b9bdcbd97f4d 137390 bwa_0.5.9-1_kfreebsd-amd64.deb
+ 3a16d542a772c3dcf9f39b822e75d13c4ccda744d221f4108b0e78732421b054 140254 bwa_0.5.9-2_kfreebsd-amd64.deb
Files:
- 7bc054e6b524c35eadb49d88a23f00ea 137390 science optional bwa_0.5.9-1_kfreebsd-amd64.deb
+ 33aeefc2098e6c331358cb27a6c7768a 140254 science optional bwa_0.5.9-2_kfreebsd-amd64.deb
┌──────────────────────────────────────────────────────────────────────────────┐
│ Package contents │
└──────────────────────────────────────────────────────────────────────────────┘
-bwa_0.5.9-1_kfreebsd-amd64.deb
+bwa_0.5.9-2_kfreebsd-amd64.deb
──────────────────────────────
new debian package, version 2.0.
- size 137390 bytes: control archive= 983 bytes.
+ size 140254 bytes: control archive= 985 bytes.
785 bytes, 17 lines control
615 bytes, 10 lines md5sums
Package: bwa
- Version: 0.5.9-1
+ Version: 0.5.9-2
Architecture: kfreebsd-amd64
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
- Installed-Size: 276
+ Installed-Size: 308
Depends: libc0.1 (>= 2.7), zlib1g (>= 1:1.1.4)
Suggests: samtools
Section: science
@@ -383,25 +382,25 @@ bwa_0.5.9-1_kfreebsd-amd64.deb
to around 100 kbp. Both algorithms do gapped alignment. They are usually more
accurate and faster on queries with low error rates.
-drwxr-xr-x root/root 0 2011-02-08 09:03 ./
-drwxr-xr-x root/root 0 2011-02-08 09:03 ./usr/
-drwxr-xr-x root/root 0 2011-02-08 09:03 ./usr/share/
-drwxr-xr-x root/root 0 2011-02-08 09:03 ./usr/share/doc/
-drwxr-xr-x root/root 0 2011-02-08 09:03 ./usr/share/doc/bwa/
+drwxr-xr-x root/root 0 2011-03-12 07:45 ./
+drwxr-xr-x root/root 0 2011-03-12 07:45 ./usr/
+drwxr-xr-x root/root 0 2011-03-12 07:45 ./usr/bin/
+-rwxr-xr-x root/root 200872 2011-03-12 07:45 ./usr/bin/bwa
+drwxr-xr-x root/root 0 2011-03-12 07:45 ./usr/share/
+drwxr-xr-x root/root 0 2011-03-12 07:45 ./usr/share/bwa/
+-rwxr-xr-x root/root 3176 2011-01-25 00:00 ./usr/share/bwa/solid2fastq.pl
+-rwxr-xr-x root/root 616 2011-01-25 00:00 ./usr/share/bwa/qualfa2fq.pl
+drwxr-xr-x root/root 0 2011-03-12 07:45 ./usr/share/doc/
+drwxr-xr-x root/root 0 2011-03-12 07:45 ./usr/share/doc/bwa/
-rw-r--r-- root/root 5857 2011-01-25 00:00 ./usr/share/doc/bwa/NEWS.gz
-rw-r--r-- root/root 634 2011-01-25 00:00 ./usr/share/doc/bwa/README
-rw-r--r-- root/root 2676 2011-02-08 07:09 ./usr/share/doc/bwa/copyright
-rw-r--r-- root/root 17912 2011-01-25 00:00 ./usr/share/doc/bwa/changelog.gz
-rw-r--r-- root/root 17912 2011-01-25 00:00 ./usr/share/doc/bwa/ChangeLog.gz
--rw-r--r-- root/root 881 2011-02-08 07:11 ./usr/share/doc/bwa/changelog.Debian.gz
-drwxr-xr-x root/root 0 2011-02-08 09:03 ./usr/share/man/
-drwxr-xr-x root/root 0 2011-02-08 09:03 ./usr/share/man/man1/
--rw-r--r-- root/root 7554 2011-02-08 09:03 ./usr/share/man/man1/bwa.1.gz
-drwxr-xr-x root/root 0 2011-02-08 09:03 ./usr/share/bwa/
--rwxr-xr-x root/root 3176 2011-01-25 00:00 ./usr/share/bwa/solid2fastq.pl
--rwxr-xr-x root/root 616 2011-01-25 00:00 ./usr/share/bwa/qualfa2fq.pl
-drwxr-xr-x root/root 0 2011-02-08 09:03 ./usr/bin/
--rwxr-xr-x root/root 195688 2011-02-08 09:03 ./usr/bin/bwa
+-rw-r--r-- root/root 957 2011-03-11 21:54 ./usr/share/doc/bwa/changelog.Debian.gz
+drwxr-xr-x root/root 0 2011-03-12 07:45 ./usr/share/man/
+drwxr-xr-x root/root 0 2011-03-12 07:45 ./usr/share/man/man1/
+-rw-r--r-- root/root 7554 2011-03-12 07:45 ./usr/share/man/man1/bwa.1.gz
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -410,10 +409,9 @@ drwxr-xr-x root/root 0 2011-02-08 09:03 ./usr/bin/
Built successfully
────────────────────────────────────────────────────────────────────────────────
-Purging /var/lib/schroot/mount/sid-ka-sbuild-1297155760-27067/build/buildd-bwa_0.5.9-1-kfreebsd-amd64-96K9Uy
-(Reading database ... 13069 files and directories currently installed.)
+Purging /var/lib/schroot/mount/sid-ka-sbuild-1299915889-68274/build/buildd-bwa_0.5.9-2-kfreebsd-amd64-IfGSc1
+(Reading database ... 13158 files and directories currently installed.)
Removing zlib1g-dev ...
-Removing cdbs ...
Removing debhelper ...
Removing po-debconf ...
Removing man-db ...
@@ -432,6 +430,8 @@ Removing libcroco3 ...
Purging configuration files for libcroco3 ...
Removing libmagic1 ...
Purging configuration files for libmagic1 ...
+Removing libpipeline1 ...
+Purging configuration files for libpipeline1 ...
Removing libxml2 ...
Purging configuration files for libxml2 ...
Removing libglib2.0-0 ...
@@ -439,6 +439,6 @@ Purging configuration files for libglib2.0-0 ...
Removing libpcre3 ...
Purging configuration files for libpcre3 ...
────────────────────────────────────────────────────────────────────────────────
-Finished at 20110208-0903
-Build needed 00:00:53, 2696k disc space
+Finished at 20110312-0745
+Build needed 00:00:53, 3014k disc space
diff --git a/kfreebsd-i386.log b/kfreebsd-i386.log
index aebe628..5887a35 100644
--- a/kfreebsd-i386.log
+++ b/kfreebsd-i386.log
@@ -1,27 +1,27 @@
-From buildd at field.debian.org Tue Feb 08 09:05:34 2011
+From buildd at field.debian.org Sat Mar 12 07:39:47 2011
Return-path: <buildd at field.debian.org>
-Received: from kokkonen.debian.org ([2001:41b8:202:deb:216:35ff:fec4:6340])
+Received: from kokkonen.debian.org ([82.195.75.97])
from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
CN=kokkonen.debian.org,
EMAIL=hostmaster at kokkonen.debian.org (verified)
by grieg.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
(Exim 4.69) (envelope-from <buildd at field.debian.org>)
- id 1PmjVu-0004V2-K6
- for logs at buildd.debian.org; Tue, 08 Feb 2011 09:05:34 +0000
+ id 1PyJQR-0001lL-1R
+ for logs at buildd.debian.org; Sat, 12 Mar 2011 07:39:47 +0000
Received: from field.debian.org ([194.177.211.210])
from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
CN=field.debian.org, EMAIL=hostmaster at field.debian.org (verified)
by kokkonen.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
(Exim 4.69) (envelope-from <buildd at field.debian.org>)
- id 1PmjVt-0000EC-4T; Tue, 08 Feb 2011 09:05:33 +0000
+ id 1PyJQP-0004dL-DD; Sat, 12 Mar 2011 07:39:45 +0000
Received: from buildd by field.debian.org with local (Exim 4.72)
(envelope-from <buildd at field.debian.org>)
- id 1PmjVr-000Q0F-NB; Tue, 08 Feb 2011 09:05:31 +0000
-Date: Tue, 08 Feb 2011 09:05:31 +0000
-Message-Id: <E1PmjVr-000Q0F-NB at field.debian.org>
+ id 1PyJQN-000Oe5-9n; Sat, 12 Mar 2011 07:39:43 +0000
+Date: Sat, 12 Mar 2011 07:39:43 +0000
+Message-Id: <E1PyJQN-000Oe5-9n at field.debian.org>
From: buildd on field <buildd at field.debian.org>
To: logs at buildd.debian.org,aurelien at aurel32.net,kibi at debian-ports.org
-Subject: Log for successful build of bwa_0.5.9-1 on kfreebsd-i386 (dist=sid)
+Subject: Log for successful build of bwa_0.5.9-2 on kfreebsd-i386 (dist=sid)
Content-Type: text/plain; charset=UTF-8
Content-Transfer-Encoding: 8bit
Delivered-To: logs at buildd.debian.org
@@ -29,48 +29,48 @@ Delivered-To: logs at buildd.debian.org
sbuild (Debian sbuild) 0.60.0 (23 Feb 2010) on field.debian.org
╔══════════════════════════════════════════════════════════════════════════════╗
-║ bwa 0.5.9-1 (kfreebsd-i386) 08 Feb 2011 09:03 ║
+║ bwa 0.5.9-2 (kfreebsd-i386) 12 Mar 2011 07:37 ║
╚══════════════════════════════════════════════════════════════════════════════╝
Package: bwa
-Version: 0.5.9-1
+Version: 0.5.9-2
Architecture: kfreebsd-i386
-Chroot Build Dir: /var/lib/schroot/mount/sid-ki-sbuild-1297155812-98383/build/buildd-bwa_0.5.9-1-kfreebsd-i386-TdDy_b
-Start Time: 20110208-0903
-Hit http://ftp.gr.debian.org sid Release.gpg
-Ign http://ftp.gr.debian.org/debian/ sid/contrib Translation-en
-Ign http://ftp.gr.debian.org/debian/ sid/main Translation-en
-Ign http://ftp.gr.debian.org/debian/ sid/non-free Translation-en
-Hit http://ftp.gr.debian.org sid Release
+Chroot Build Dir: /var/lib/schroot/mount/sid-ki-sbuild-1299915477-93817/build/buildd-bwa_0.5.9-2-kfreebsd-i386-ZDb6_f
+Start Time: 20110312-0737
+Hit http://ftp.gr.debian.org sid InRelease
Hit http://ftp.gr.debian.org sid/main Sources/DiffIndex
-Get:1 http://incoming.debian.org sid Release.gpg [835 B]
-Ign http://incoming.debian.org/debian/ sid/contrib Translation-en
-Ign http://incoming.debian.org/debian/ sid/main Translation-en
-Ign http://incoming.debian.org/debian/ sid/non-free Translation-en
-Get:2 http://incoming.debian.org Release.gpg [835 B]
+Hit http://incoming.debian.org sid InRelease
+Ign http://incoming.debian.org InRelease
Hit http://ftp.gr.debian.org sid/contrib Sources/DiffIndex
Hit http://ftp.gr.debian.org sid/non-free Sources/DiffIndex
-Ign http://incoming.debian.org/buildd-unstable/ Translation-en
Hit http://ftp.gr.debian.org sid/main kfreebsd-i386 Packages/DiffIndex
Hit http://ftp.gr.debian.org sid/contrib kfreebsd-i386 Packages/DiffIndex
Hit http://ftp.gr.debian.org sid/non-free kfreebsd-i386 Packages/DiffIndex
-Get:3 http://incoming.debian.org sid Release [104 kB]
-Get:4 http://incoming.debian.org Release [1604 B]
-Get:5 http://incoming.debian.org sid/main Sources/DiffIndex [2038 B]
+Ign http://ftp.gr.debian.org sid/contrib TranslationIndex
+Hit http://ftp.gr.debian.org sid/main TranslationIndex
+Ign http://ftp.gr.debian.org sid/non-free TranslationIndex
+Hit http://incoming.debian.org Release.gpg
+Ign http://ftp.gr.debian.org sid/contrib Translation-en
+Ign http://ftp.gr.debian.org sid/non-free Translation-en
+Hit http://incoming.debian.org sid/main Sources/DiffIndex
Hit http://incoming.debian.org sid/contrib Sources/DiffIndex
Hit http://incoming.debian.org sid/non-free Sources/DiffIndex
-Get:6 http://incoming.debian.org sid/main kfreebsd-i386 Packages/DiffIndex [2038 B]
+Hit http://incoming.debian.org sid/main kfreebsd-i386 Packages/DiffIndex
Hit http://incoming.debian.org sid/contrib kfreebsd-i386 Packages/DiffIndex
Hit http://incoming.debian.org sid/non-free kfreebsd-i386 Packages/DiffIndex
-Get:7 http://incoming.debian.org Sources [43.1 kB]
-Get:8 http://incoming.debian.org Packages [680 kB]
-Get:9 http://incoming.debian.org sid/main 2011-02-08-0812.10.pdiff [3472 B]
-Get:10 http://incoming.debian.org sid/main kfreebsd-i386 2011-02-08-0812.10.pdiff [46.7 kB]
-Get:11 http://incoming.debian.org sid/main 2011-02-08-0812.10.pdiff [3472 B]
-Get:12 http://incoming.debian.org sid/main 2011-02-08-0812.10.pdiff [3472 B]
-Get:13 http://incoming.debian.org sid/main kfreebsd-i386 2011-02-08-0812.10.pdiff [46.7 kB]
-Get:14 http://incoming.debian.org sid/main kfreebsd-i386 2011-02-08-0812.10.pdiff [46.7 kB]
-Fetched 884 kB in 7s (115 kB/s)
+Ign http://incoming.debian.org sid/contrib TranslationIndex
+Hit http://incoming.debian.org sid/main TranslationIndex
+Ign http://incoming.debian.org sid/non-free TranslationIndex
+Hit http://incoming.debian.org Release
+Ign http://incoming.debian.org sid/main 2011-03-12-0214.38.pdiff
+Ign http://incoming.debian.org sid/main kfreebsd-i386 2011-03-12-0214.38.pdiff
+Hit http://incoming.debian.org sid/main
+Hit http://incoming.debian.org sid/main kfreebsd-i386
+Hit http://incoming.debian.org Sources
+Hit http://incoming.debian.org Packages
+Ign http://incoming.debian.org sid/contrib Translation-en
+Ign http://incoming.debian.org sid/non-free Translation-en
+Ign http://incoming.debian.org Translation-en
Reading package lists...
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -92,54 +92,55 @@ Reading state information...
NOTICE: 'bwa' packaging is maintained in the 'Git' version control system at:
git://git.debian.org/git/debian-med/bwa.git
Need to get 119 kB of source archives.
-Get:1 http://incoming.debian.org/buildd-unstable/ bwa 0.5.9-1 (dsc) [1894 B]
-Get:2 http://incoming.debian.org/buildd-unstable/ bwa 0.5.9-1 (tar) [114 kB]
-Get:3 http://incoming.debian.org/buildd-unstable/ bwa 0.5.9-1 (diff) [3651 B]
-Fetched 119 kB in 1s (95.3 kB/s)
+Get:1 http://incoming.debian.org/buildd-unstable/ bwa 0.5.9-2 (dsc) [1245 B]
+Get:2 http://incoming.debian.org/buildd-unstable/ bwa 0.5.9-2 (tar) [114 kB]
+Get:3 http://incoming.debian.org/buildd-unstable/ bwa 0.5.9-2 (diff) [3828 B]
+Fetched 119 kB in 1s (103 kB/s)
Download complete and in download only mode
Check arch
──────────
** Using build dependencies supplied by package:
-Build-Depends: cdbs, debhelper (>= 8), zlib1g-dev
+Build-Depends: debhelper (>= 8), zlib1g-dev
┌──────────────────────────────────────────────────────────────────────────────┐
│ Install build dependencies (internal resolver) │
└──────────────────────────────────────────────────────────────────────────────┘
Checking for already installed source dependencies...
-cdbs: missing
debhelper: missing
-Using default version 8.1.0
+Using default version 8.1.2
zlib1g-dev: missing
Checking for source dependency conflicts...
-Installing positive dependencies: cdbs debhelper zlib1g-dev
+Installing positive dependencies: debhelper zlib1g-dev
Reading package lists...
Building dependency tree...
Reading state information...
The following extra packages will be installed:
file gettext gettext-base groff-base html2text intltool-debian libcroco3
- libglib2.0-0 libmagic1 libpcre3 libunistring0 libxml2 man-db po-debconf
+ libglib2.0-0 libmagic1 libpcre3 libpipeline1 libunistring0 libxml2 man-db
+ po-debconf
Suggested packages:
- devscripts doc-base dh-make gettext-doc groff less www-browser
- libmail-box-perl
+ dh-make gettext-doc groff less www-browser libmail-box-perl
Recommended packages:
- autotools-dev curl wget lynx-cur autopoint libglib2.0-data shared-mime-info
- xml-core libmail-sendmail-perl
+ curl wget lynx-cur autopoint libglib2.0-data shared-mime-info xml-core
+ libmail-sendmail-perl
The following NEW packages will be installed:
- cdbs debhelper file gettext gettext-base groff-base html2text
- intltool-debian libcroco3 libglib2.0-0 libmagic1 libpcre3 libunistring0
- libxml2 man-db po-debconf zlib1g-dev
+ debhelper file gettext gettext-base groff-base html2text intltool-debian
+ libcroco3 libglib2.0-0 libmagic1 libpcre3 libpipeline1 libunistring0 libxml2
+ man-db po-debconf zlib1g-dev
debconf: delaying package configuration, since apt-utils is not installed
-0 upgraded, 17 newly installed, 0 to remove and 2 not upgraded.
-Need to get 0 B/9638 kB of archives.
-After this operation, 25.4 MB of additional disk space will be used.
+0 upgraded, 17 newly installed, 0 to remove and 7 not upgraded.
+Need to get 0 B/8672 kB of archives.
+After this operation, 24.2 MB of additional disk space will be used.
Selecting previously deselected package groff-base.
-(Reading database ... 11764 files and directories currently installed.)
-Unpacking groff-base (from .../groff-base_1.20.1-10_kfreebsd-i386.deb) ...
+(Reading database ... 11911 files and directories currently installed.)
+Unpacking groff-base (from .../groff-base_1.21-4_kfreebsd-i386.deb) ...
+Selecting previously deselected package libpipeline1.
+Unpacking libpipeline1 (from .../libpipeline1_1.1.0-1_kfreebsd-i386.deb) ...
Selecting previously deselected package man-db.
-Unpacking man-db (from .../man-db_2.5.7-8_kfreebsd-i386.deb) ...
+Unpacking man-db (from .../man-db_2.5.9-4_kfreebsd-i386.deb) ...
Selecting previously deselected package libmagic1.
Unpacking libmagic1 (from .../libmagic1_5.04-5_kfreebsd-i386.deb) ...
Selecting previously deselected package file.
@@ -147,13 +148,13 @@ Unpacking file (from .../file_5.04-5_kfreebsd-i386.deb) ...
Selecting previously deselected package gettext-base.
Unpacking gettext-base (from .../gettext-base_0.18.1.1-3_kfreebsd-i386.deb) ...
Selecting previously deselected package libpcre3.
-Unpacking libpcre3 (from .../libpcre3_8.12-1_kfreebsd-i386.deb) ...
+Unpacking libpcre3 (from .../libpcre3_8.12-3_kfreebsd-i386.deb) ...
Selecting previously deselected package libxml2.
Unpacking libxml2 (from .../libxml2_2.7.8.dfsg-2_kfreebsd-i386.deb) ...
Selecting previously deselected package html2text.
Unpacking html2text (from .../html2text_1.3.2a-15_kfreebsd-i386.deb) ...
Selecting previously deselected package libglib2.0-0.
-Unpacking libglib2.0-0 (from .../libglib2.0-0_2.24.2-1_kfreebsd-i386.deb) ...
+Unpacking libglib2.0-0 (from .../libglib2.0-0_2.28.1-1+b1_kfreebsd-i386.deb) ...
Selecting previously deselected package libcroco3.
Unpacking libcroco3 (from .../libcroco3_0.6.2-1_kfreebsd-i386.deb) ...
Selecting previously deselected package libunistring0.
@@ -165,34 +166,33 @@ Unpacking intltool-debian (from .../intltool-debian_0.35.0+20060710.1_all.deb) .
Selecting previously deselected package po-debconf.
Unpacking po-debconf (from .../po-debconf_1.0.16+nmu1_all.deb) ...
Selecting previously deselected package debhelper.
-Unpacking debhelper (from .../debhelper_8.1.0_all.deb) ...
-Selecting previously deselected package cdbs.
-Unpacking cdbs (from .../archives/cdbs_0.4.89_all.deb) ...
+Unpacking debhelper (from .../debhelper_8.1.2_all.deb) ...
Selecting previously deselected package zlib1g-dev.
Unpacking zlib1g-dev (from .../zlib1g-dev_1%3a1.2.3.4.dfsg-3_kfreebsd-i386.deb) ...
-Setting up groff-base (1.20.1-10) ...
-Setting up man-db (2.5.7-8) ...
+Setting up groff-base (1.21-4) ...
+Setting up libpipeline1 (1.1.0-1) ...
+Setting up man-db (2.5.9-4) ...
Building database of manual pages ...
Setting up libmagic1 (5.04-5) ...
Setting up file (5.04-5) ...
Setting up gettext-base (0.18.1.1-3) ...
-Setting up libpcre3 (8.12-1) ...
+Setting up libpcre3 (8.12-3) ...
Setting up libxml2 (2.7.8.dfsg-2) ...
Setting up html2text (1.3.2a-15) ...
-Setting up libglib2.0-0 (2.24.2-1) ...
+Setting up libglib2.0-0 (2.28.1-1+b1) ...
+No schema files found: doing nothing.
Setting up libcroco3 (0.6.2-1) ...
Setting up libunistring0 (0.9.3-3) ...
Setting up gettext (0.18.1.1-3) ...
Setting up intltool-debian (0.35.0+20060710.1) ...
Setting up po-debconf (1.0.16+nmu1) ...
-Setting up debhelper (8.1.0) ...
-Setting up cdbs (0.4.89) ...
+Setting up debhelper (8.1.2) ...
Setting up zlib1g-dev (1:1.2.3.4.dfsg-3) ...
Removing negative dependencies:
Checking correctness of source dependencies...
Kernel: GNU/kFreeBSD 8.1-1-686-smp kfreebsd-i386 (i686)
-Toolchain package versions: libc6-dev_ =*=NOT INSTALLED=*= dpkg-dev_1.15.8.10 libstdc++6_4.4.5-10 gcc-4.4_4.4.5-10 g++-4.4_4.4.5-10 binutils_2.20.1-16 libstdc++6-4.4-dev_4.4.5-10 libc0.1-dev_2.11.2-11 kfreebsd-kernel-headers_0.53
-Package versions: apt_0.8.10.3 base-files_6.0 base-passwd_3.5.22 bash_4.1-3 binutils_2.20.1-16 bsdmainutils_8.2.2 bsdutils_1:2.17.2-9 build-essential_11.5 bzip2_1.0.5-6 cdbs_0.4.89 coreutils_8.5-1 cpp_4:4.4.5-2 cpp-4.4_4.4.5-10 dash_0.5.5.1-7.4 debconf_1.5.38 debconf-i18n_1.5.38 debfoster_2.7-1.1 debhelper_8.1.0 debian-archive-keyring_2010.08.28 debianutils_3.4.3+b1 diffutils_1:3.0-1 dpkg_1.15.8.10 dpkg-dev_1.15.8.10 e2fslibs_1.41.12-2 e2fsprogs_1.41.12-2 fakeroot_1.14.5-1+b1 file_5.04-5 findutils_4.4.2-1 freebsd-utils_8.1-4 g++_4:4.4.5-2 g++-4.4_4.4.5-10 gcc_4:4.4.5-2 gcc-4.4_4.4.5-10 gcc-4.4-base_4.4.5-10 gettext_0.18.1.1-3 gettext-base_0.18.1.1-3 gnupg_1.4.10-4 gpgv_1.4.10-4 grep_2.6.3-3 groff-base_1.20.1-10 gzip_1.3.12-9 hostname_3.05 html2text_1.3.2a-15 initscripts_2.88dsf-13.1 insserv_1.14.0-2 intltool-debian_0.35.0+20060710.1 kfreebsd-kernel-headers_0.53 libacl1_2.2.49-4 libattr1_1:2.4.44-2 libblkid1_2.17.2-9 libbsd0_0.2.0-1 libbz2-1.0_1.0.5-6 libc-bin_2.11.2-11 libc-dev-bin_2.11.2-11 libc0.1_2.11.2-11 libc0.1-dev_2.11.2-11 libcam0_8.1-5 libcomerr2_1.41.12-2 libcroco3_0.6.2-1 libdb4.7_4.7.25-12 libdb4.8_4.8.30-4 libdpkg-perl_1.15.8.10 libedit2_2.11-20080614-2 libexpat1_2.0.1-7 libgc1c2_1:6.8-1.2 libgcc1_1:4.4.5-10 libgcrypt11_1.4.5-2 libgdbm3_1.8.3-9 libgeom0_8.1-5 libglib2.0-0_2.24.2-1 libgmp3c2_2:4.3.2+dfsg-1 libgnutls26_2.10.4-2 libgomp1_4.4.5-10 libgpg-error0_1.10-0.3 libkiconv4_8.1-5 libkvm0_8.1-5 libldap-2.4-2_2.4.23-7 liblocale-gettext-perl_1.05-6 liblzma2_5.0.0-2 libmagic1_5.04-5 libmpfr4_3.0.0-2 libncurses5_5.7+20100313-5 libncursesw5_5.7+20100313-5 libpam-modules_1.1.1-6.1 libpam-runtime_1.1.1-6.1 libpam0g_1.1.1-6.1 libpcre3_8.12-1 libpng12-0_1.2.44-1 libreadline6_6.1-3 libsasl2-2_2.1.23.dfsg1-7 libsbuf0_8.1-5 libslang2_2.2.2-4 libss2_1.41.12-2 libstdc++6_4.4.5-10 libstdc++6-4.4-dev_4.4.5-10 libtasn1-3_2.7-1 libtext-charwidth-perl_0.04-6 libtext-iconv-perl_1.7-2 libtext-wrapi18n-perl_0.06-7 libtimedate-perl_1.2000-1 libunistring0_0.9.3-3 libusb-0.1-4_2:0.1.12-17 libuuid1_2.17.2-9 libxml2_2.7.8.dfsg-2 login_1:4.1.4.2+svn3283-2 lsb-base_3.2-27 lzma_4.43-14 make_3.81-8 man-db_2.5.7-8 mawk_1.3.3-15 ncurses-base_5.7+20100313-5 ncurses-bin_5.7+20100313-5 netbase_4.45 passwd_1:4.1.4.2+svn3283-2 patch_2.6-3 perl_5.10.1-17 perl-base_5.10.1-17 perl-modules_5.10.1-17 po-debconf_1.0.16+nmu1 procps_1:3.2.8-10 psmisc_22.13-1 readline-common_6.1-3 sed_4.2.1-8 sensible-utils_0.0.6 sudo_1.7.4p4-6 sysv-rc_2.88dsf-13.1 sysvinit_2.88dsf-13.1 sysvinit-utils_2.88dsf-13.1 tar_1.25-3 type-handling_0.2.23 tzdata_2011a-1 ufsutils_7.3-1+b1 util-linux_2.17.2-9 xz-utils_5.0.0-2 zlib1g_1:1.2.3.4.dfsg-3 zlib1g-dev_1:1.2.3.4.dfsg-3
+Toolchain package versions: libc6-dev_ =*=NOT INSTALLED=*= dpkg-dev_1.15.8.10 libstdc++6_4.5.2-5 gcc-4.5_4.5.2-5 g++-4.5_ =*=NOT INSTALLED=*= binutils_2.21.0.20110302-1 libstdc++6-4.5-dev_ =*=NOT INSTALLED=*= libc0.1-dev_2.11.2-13 kfreebsd-kernel-headers_0.53
+Package versions: apt_0.8.11.5 base-files_6.1 base-passwd_3.5.22 bash_4.1-3 binutils_2.21.0.20110302-1 bsdmainutils_8.2.2 bsdutils_1:2.17.2-9.1 build-essential_11.5 bzip2_1.0.5-6 coreutils_8.5-1 cpp_4:4.5.2-2 cpp-4.4_4.4.5-13 cpp-4.5_4.5.2-5 dash_0.5.5.1-7.4 debconf_1.5.38 debconf-i18n_1.5.38 debfoster_2.7-1.1 debhelper_8.1.2 debian-archive-keyring_2010.08.28 debianutils_3.4.4 diffutils_1:3.0-1 dpkg_1.15.8.10 dpkg-dev_1.15.8.10 e2fslibs_1.41.12-2 e2fsprogs_1.41.12-2 fakeroot_1.14.5-1+b1 file_5.04-5 findutils_4.4.2-1 freebsd-utils_8.1-4 g++_4:4.4.5-2 g++-4.4_4.4.5-13 gcc_4:4.5.2-2 gcc-4.4_4.4.5-13 gcc-4.4-base_4.4.5-13 gcc-4.5_4.5.2-5 gcc-4.5-base_4.5.2-5 gettext_0.18.1.1-3 gettext-base_0.18.1.1-3 gnupg_1.4.11-3 gpgv_1.4.11-3 grep_2.6.3-3 groff-base_1.21-4 gzip_1.3.12-9 hostname_3.05 html2text_1.3.2a-15 initscripts_2.88dsf-13.1 insserv_1.14.0-2 intltool-debian_0.35.0+20060710.1 kfreebsd-kernel-headers_0.53 libacl1_2.2.49-4 libattr1_1:2.4.44-2 libblkid1_2.17.2-9.1 libbsd0_0.2.0-1 libbz2-1.0_1.0.5-6 libc-bin_2.11.2-13 libc-dev-bin_2.11.2-13 libc0.1_2.11.2-13 libc0.1-dev_2.11.2-13 libcam0_8.1-5 libcloog-ppl0_0.15.9-2 libcomerr2_1.41.12-2 libcroco3_0.6.2-1 libdb4.7_4.7.25-12 libdb4.8_4.8.30-5 libdpkg-perl_1.15.8.10 libedit2_2.11-20080614-2 libelfg0_0.8.13-1 libexpat1_2.0.1-7 libgc1c2_1:7.1-7 libgcc1_1:4.5.2-5 libgcrypt11_1.4.6-5 libgdbm3_1.8.3-9 libgeom0_8.1-5 libglib2.0-0_2.28.1-1+b1 libgmp10_2:5.0.1+dfsg-6 libgmp3c2_2:4.3.2+dfsg-1 libgmpxx4ldbl_2:5.0.1+dfsg-6 libgnutls26_2.10.5-1 libgomp1_4.5.2-5 libgpg-error0_1.10-0.3 libkiconv4_8.1-5 libkvm0_8.1-5 libldap-2.4-2_2.4.23-7 liblocale-gettext-perl_1.05-6 liblzma2_5.0.0-2 libmagic1_5.04-5 libmpc2_0.9-2 libmpfr4_3.0.0-9 libncurses5_5.8+20110307-1 libncursesw5_5.8+20110307-1 libpam-modules_1.1.2-2 libpam-runtime_1.1.2-2 libpam0g_1.1.2-2 libpcre3_8.12-3 libpipeline1_1.1.0-1 libpng12-0_1.2.44-1 libppl-c2_0.10.2-9 libppl7_0.10.2-9 libreadline6_6.1-3 libsasl2-2_2.1.23.dfsg1-7 libsbuf0_8.1-5 libslang2_2.2.2-4 libss2_1.41.12-2 libstdc++6_4.5.2-5 libstdc++6-4.4-dev_4.4.5-13 libtasn1-3_2.9-2 libtext-charwidth-perl_0.04-6 libtext-iconv-perl_1.7-2 libtext-wrapi18n-perl_0.06-7 libtimedate-perl_1.2000-1 libunistring0_0.9.3-3 libusb-0.1-4_2:0.1.12-17 libuuid1_2.17.2-9.1 libxml2_2.7.8.dfsg-2 login_1:4.1.4.2+svn3283-3 lsb-base_3.2-27 lzma_4.43-14 make_3.81-8 man-db_2.5.9-4 mawk_1.3.3-15 ncurses-base_5.7+20100313-5 ncurses-bin_5.8+20110307-1 netbase_4.45 passwd_1:4.1.4.2+svn3283-3 patch_2.6.1-1 perl_5.10.1-17 perl-base_5.10.1-17 perl-modules_5.10.1-17 po-debconf_1.0.16+nmu1 procps_1:3.2.8-10 psmisc_22.13-1 readline-common_6.1-3 sed_4.2.1-9 sensible-utils_0.0.6 sudo_1.7.4p6-1 sysv-rc_2.88dsf-13.1 sysvinit_2.88dsf-13.1 sysvinit-utils_2.88dsf-13.1 tar_1.25-3 type-handling_0.2.23 tzdata_2011b-2 ufsutils_7.3-1+b1 util-linux_2.17.2-9.1 xz-utils_5.0.0-2 zlib1g_1:1.2.3.4.dfsg-3 zlib1g-dev_1:1.2.3.4.dfsg-3
┌──────────────────────────────────────────────────────────────────────────────┐
│ Build │
@@ -204,12 +204,12 @@ Unpack source
dpkg-source: warning: -sn is not a valid option for Dpkg::Source::Package::V3::quilt
gpgv: keyblock resource `/home/buildd/.gnupg/trustedkeys.gpg': file open error
-gpgv: Signature made Tue Feb 8 07:20:43 2011 UTC using RSA key ID 2295D502
+gpgv: Signature made Fri Mar 11 21:59:41 2011 UTC using DSA key ID C09FD35A
gpgv: Can't check signature: public key not found
-dpkg-source: warning: failed to verify signature on ./bwa_0.5.9-1.dsc
+dpkg-source: warning: failed to verify signature on ./bwa_0.5.9-2.dsc
dpkg-source: info: extracting bwa in bwa-0.5.9
dpkg-source: info: unpacking bwa_0.5.9.orig.tar.bz2
-dpkg-source: info: unpacking bwa_0.5.9-1.debian.tar.gz
+dpkg-source: info: unpacking bwa_0.5.9-2.debian.tar.gz
Check disc space
────────────────
@@ -224,154 +224,155 @@ dpkg-buildpackage: export CXXFLAGS from dpkg-buildflags (origin: vendor): -g -O2
dpkg-buildpackage: export FFLAGS from dpkg-buildflags (origin: vendor): -g -O2
dpkg-buildpackage: export LDFLAGS from dpkg-buildflags (origin: vendor):
dpkg-buildpackage: source package bwa
-dpkg-buildpackage: source version 0.5.9-1
+dpkg-buildpackage: source version 0.5.9-2
dpkg-source --before-build bwa-0.5.9
dpkg-buildpackage: host architecture kfreebsd-i386
/usr/bin/fakeroot debian/rules clean
-test -x debian/rules
-dh_testroot
-rm -f debian/stamp-makefile-build debian/stamp-makefile-install
-/usr/bin/make -C . CFLAGS="-g -O2 -g -Wall -O2" CXXFLAGS="-g -O2 -g -Wall -O2" CPPFLAGS="" LDFLAGS="" -k clean
-make[1]: Entering directory `/build/buildd-bwa_0.5.9-1-kfreebsd-i386-TdDy_b/bwa-0.5.9'
-make[2]: Entering directory `/build/buildd-bwa_0.5.9-1-kfreebsd-i386-TdDy_b/bwa-0.5.9'
+dh clean
+ dh_testdir
+ dh_auto_clean
+make[1]: Entering directory `/build/buildd-bwa_0.5.9-2-kfreebsd-i386-ZDb6_f/bwa-0.5.9'
+make[2]: Entering directory `/build/buildd-bwa_0.5.9-2-kfreebsd-i386-ZDb6_f/bwa-0.5.9'
rm -f gmon.out *.o a.out bwa *~ *.a
-make[2]: Leaving directory `/build/buildd-bwa_0.5.9-1-kfreebsd-i386-TdDy_b/bwa-0.5.9'
-make[2]: Entering directory `/build/buildd-bwa_0.5.9-1-kfreebsd-i386-TdDy_b/bwa-0.5.9/bwt_gen'
+make[2]: Leaving directory `/build/buildd-bwa_0.5.9-2-kfreebsd-i386-ZDb6_f/bwa-0.5.9'
+make[2]: Entering directory `/build/buildd-bwa_0.5.9-2-kfreebsd-i386-ZDb6_f/bwa-0.5.9/bwt_gen'
rm -f gmon.out *.o a.out *~ *.a
-make[2]: Leaving directory `/build/buildd-bwa_0.5.9-1-kfreebsd-i386-TdDy_b/bwa-0.5.9/bwt_gen'
-make[1]: Leaving directory `/build/buildd-bwa_0.5.9-1-kfreebsd-i386-TdDy_b/bwa-0.5.9'
-dh_clean
+make[2]: Leaving directory `/build/buildd-bwa_0.5.9-2-kfreebsd-i386-ZDb6_f/bwa-0.5.9/bwt_gen'
+make[1]: Leaving directory `/build/buildd-bwa_0.5.9-2-kfreebsd-i386-ZDb6_f/bwa-0.5.9'
+ dh_clean
debian/rules build
-test -x debian/rules
-mkdir -p "."
-/usr/bin/make -C . CFLAGS="-g -O2 -g -Wall -O2" CXXFLAGS="-g -O2 -g -Wall -O2" CPPFLAGS="" LDFLAGS=""
-make[1]: Entering directory `/build/buildd-bwa_0.5.9-1-kfreebsd-i386-TdDy_b/bwa-0.5.9'
-make[2]: Entering directory `/build/buildd-bwa_0.5.9-1-kfreebsd-i386-TdDy_b/bwa-0.5.9'
+dh build
+ dh_testdir
+ dh_auto_configure
+ dh_auto_build
+make[1]: Entering directory `/build/buildd-bwa_0.5.9-2-kfreebsd-i386-ZDb6_f/bwa-0.5.9'
+make[2]: Entering directory `/build/buildd-bwa_0.5.9-2-kfreebsd-i386-ZDb6_f/bwa-0.5.9'
make[2]: Nothing to be done for `lib'.
-make[2]: Leaving directory `/build/buildd-bwa_0.5.9-1-kfreebsd-i386-TdDy_b/bwa-0.5.9'
-make[2]: Entering directory `/build/buildd-bwa_0.5.9-1-kfreebsd-i386-TdDy_b/bwa-0.5.9/bwt_gen'
-gcc -c -g -O2 -g -Wall -O2 -DHAVE_PTHREAD bwt_gen.c -o bwt_gen.o
-gcc -c -g -O2 -g -Wall -O2 -DHAVE_PTHREAD QSufSort.c -o QSufSort.o
+make[2]: Leaving directory `/build/buildd-bwa_0.5.9-2-kfreebsd-i386-ZDb6_f/bwa-0.5.9'
+make[2]: Entering directory `/build/buildd-bwa_0.5.9-2-kfreebsd-i386-ZDb6_f/bwa-0.5.9/bwt_gen'
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD bwt_gen.c -o bwt_gen.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD QSufSort.c -o QSufSort.o
ar -cru libbwtgen.a bwt_gen.o QSufSort.o
-make[2]: Leaving directory `/build/buildd-bwa_0.5.9-1-kfreebsd-i386-TdDy_b/bwa-0.5.9/bwt_gen'
-gcc -c -g -O2 -g -Wall -O2 -DHAVE_PTHREAD utils.c -o utils.o
-gcc -c -g -O2 -g -Wall -O2 -DHAVE_PTHREAD bwt.c -o bwt.o
-gcc -c -g -O2 -g -Wall -O2 -DHAVE_PTHREAD bwtio.c -o bwtio.o
-gcc -c -g -O2 -g -Wall -O2 -DHAVE_PTHREAD bwtaln.c -o bwtaln.o
-gcc -c -g -O2 -g -Wall -O2 -DHAVE_PTHREAD bwtgap.c -o bwtgap.o
-gcc -c -g -O2 -g -Wall -O2 -DHAVE_PTHREAD is.c -o is.o
-gcc -c -g -O2 -g -Wall -O2 -DHAVE_PTHREAD bntseq.c -o bntseq.o
-gcc -c -g -O2 -g -Wall -O2 -DHAVE_PTHREAD bwtmisc.c -o bwtmisc.o
-gcc -c -g -O2 -g -Wall -O2 -DHAVE_PTHREAD bwtindex.c -o bwtindex.o
-gcc -c -g -O2 -g -Wall -O2 -DHAVE_PTHREAD stdaln.c -o stdaln.o
-gcc -c -g -O2 -g -Wall -O2 -DHAVE_PTHREAD simple_dp.c -o simple_dp.o
-gcc -c -g -O2 -g -Wall -O2 -DHAVE_PTHREAD bwaseqio.c -o bwaseqio.o
-gcc -c -g -O2 -g -Wall -O2 -DHAVE_PTHREAD bwase.c -o bwase.o
-gcc -c -g -O2 -g -Wall -O2 -DHAVE_PTHREAD bwape.c -o bwape.o
-gcc -c -g -O2 -g -Wall -O2 -DHAVE_PTHREAD kstring.c -o kstring.o
-gcc -c -g -O2 -g -Wall -O2 -DHAVE_PTHREAD cs2nt.c -o cs2nt.o
-gcc -c -g -O2 -g -Wall -O2 -DHAVE_PTHREAD bwtsw2_core.c -o bwtsw2_core.o
-gcc -c -g -O2 -g -Wall -O2 -DHAVE_PTHREAD bwtsw2_main.c -o bwtsw2_main.o
-gcc -c -g -O2 -g -Wall -O2 -DHAVE_PTHREAD bwtsw2_aux.c -o bwtsw2_aux.o
-gcc -c -g -O2 -g -Wall -O2 -DHAVE_PTHREAD bwt_lite.c -o bwt_lite.o
-gcc -c -g -O2 -g -Wall -O2 -DHAVE_PTHREAD bwtsw2_chain.c -o bwtsw2_chain.o
-gcc -c -g -O2 -g -Wall -O2 -DHAVE_PTHREAD bamlite.c -o bamlite.o
-gcc -c -g -O2 -g -Wall -O2 -DHAVE_PTHREAD main.c -o main.o
-gcc -g -O2 -g -Wall -O2 -DHAVE_PTHREAD utils.o bwt.o bwtio.o bwtaln.o bwtgap.o is.o bntseq.o bwtmisc.o bwtindex.o stdaln.o simple_dp.o bwaseqio.o bwase.o bwape.o kstring.o cs2nt.o bwtsw2_core.o bwtsw2_main.o bwtsw2_aux.o bwt_lite.o bwtsw2_chain.o bamlite.o main.o -o bwa -lm -lz -lpthread -Lbwt_gen -lbwtgen
-make[1]: Leaving directory `/build/buildd-bwa_0.5.9-1-kfreebsd-i386-TdDy_b/bwa-0.5.9'
-touch debian/stamp-makefile-build
-DEB_MAKE_CHECK_TARGET unset, not running checks
+make[2]: Leaving directory `/build/buildd-bwa_0.5.9-2-kfreebsd-i386-ZDb6_f/bwa-0.5.9/bwt_gen'
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD utils.c -o utils.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD bwt.c -o bwt.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD bwtio.c -o bwtio.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD bwtaln.c -o bwtaln.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD bwtgap.c -o bwtgap.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD is.c -o is.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD bntseq.c -o bntseq.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD bwtmisc.c -o bwtmisc.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD bwtindex.c -o bwtindex.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD stdaln.c -o stdaln.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD simple_dp.c -o simple_dp.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD bwaseqio.c -o bwaseqio.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD bwase.c -o bwase.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD bwape.c -o bwape.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD kstring.c -o kstring.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD cs2nt.c -o cs2nt.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD bwtsw2_core.c -o bwtsw2_core.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD bwtsw2_main.c -o bwtsw2_main.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD bwtsw2_aux.c -o bwtsw2_aux.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD bwt_lite.c -o bwt_lite.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD bwtsw2_chain.c -o bwtsw2_chain.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD bamlite.c -o bamlite.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD main.c -o main.o
+gcc -g -Wall -O2 -DHAVE_PTHREAD utils.o bwt.o bwtio.o bwtaln.o bwtgap.o is.o bntseq.o bwtmisc.o bwtindex.o stdaln.o simple_dp.o bwaseqio.o bwase.o bwape.o kstring.o cs2nt.o bwtsw2_core.o bwtsw2_main.o bwtsw2_aux.o bwt_lite.o bwtsw2_chain.o bamlite.o main.o -o bwa -lm -lz -lpthread -Lbwt_gen -lbwtgen
+make[1]: Leaving directory `/build/buildd-bwa_0.5.9-2-kfreebsd-i386-ZDb6_f/bwa-0.5.9'
+ dh_auto_test
/usr/bin/fakeroot debian/rules binary-arch
-test -x debian/rules
-dh_testroot
-dh_prep
-dh_installdirs -A
-mkdir -p "."
-DEB_MAKE_CHECK_TARGET unset, not running checks
-DEB_MAKE_INSTALL_TARGET unset, skipping default makefile.mk common-install target
-Adding cdbs dependencies to debian/bwa.substvars
-dh_installdirs -pbwa
-dh_installdocs -pbwa ./README ./NEWS
-dh_installexamples -pbwa
-dh_installman -pbwa
-dh_installinfo -pbwa
-dh_installmenu -pbwa
-dh_installcron -pbwa
-dh_installinit -pbwa
-dh_installdebconf -pbwa
-dh_installemacsen -pbwa
-dh_installcatalogs -pbwa
-dh_installpam -pbwa
-dh_installlogrotate -pbwa
-dh_installlogcheck -pbwa
-dh_installchangelogs -pbwa ./ChangeLog
-dh_installudev -pbwa
-dh_lintian -pbwa
-dh_install -pbwa
-dh_link -pbwa
-dh_installmime -pbwa
-dh_strip -pbwa
-dh_compress -pbwa
-dh_fixperms -pbwa
-dh_makeshlibs -pbwa
-dh_installdeb -pbwa
-dh_perl -pbwa
-dh_shlibdeps -pbwa
-dh_gencontrol -pbwa
+dh binary-arch
+ dh_testroot -a
+ dh_prep -a
+ dh_installdirs -a
+ dh_auto_install -a
+ dh_install -a
+ dh_installdocs -a
+ dh_installchangelogs -a
+ dh_installexamples -a
+ dh_installman -a
+ dh_installcatalogs -a
+ dh_installcron -a
+ dh_installdebconf -a
+ dh_installemacsen -a
+ dh_installifupdown -a
+ dh_installinfo -a
+ dh_installinit -a
+ dh_installmenu -a
+ dh_installmime -a
+ dh_installmodules -a
+ dh_installlogcheck -a
+ dh_installlogrotate -a
+ dh_installpam -a
+ dh_installppp -a
+ dh_installudev -a
+ dh_installwm -a
+ dh_installxfonts -a
+ dh_bugfiles -a
+ dh_lintian -a
+ dh_gconf -a
+ dh_icons -a
+ dh_perl -a
+ dh_usrlocal -a
+ dh_link -a
+ dh_compress -a
+ dh_fixperms -a
+ dh_strip -a
+ dh_makeshlibs -a
+ dh_shlibdeps -a
+ dh_installdeb -a
+ dh_gencontrol -a
dpkg-gencontrol: warning: package bwa: unused substitution variable ${perl:Depends}
-dh_md5sums -pbwa
-dh_builddeb -pbwa
-dpkg-deb: building package `bwa' in `../bwa_0.5.9-1_kfreebsd-i386.deb'.
- dpkg-genchanges -B -mkfreebsd-i386 Build Daemon (field) <buildd_kfreebsd-i386-field at buildd.debian.org> >../bwa_0.5.9-1_kfreebsd-i386.changes
+ dh_md5sums -a
+ dh_builddeb -a
+dpkg-deb: building package `bwa' in `../bwa_0.5.9-2_kfreebsd-i386.deb'.
+ dpkg-genchanges -B -mkfreebsd-i386 Build Daemon (field) <buildd_kfreebsd-i386-field at buildd.debian.org> >../bwa_0.5.9-2_kfreebsd-i386.changes
dpkg-genchanges: arch-specific upload - not including arch-independent packages
dpkg-genchanges: binary-only upload - not including any source code
dpkg-source --after-build bwa-0.5.9
dpkg-buildpackage: binary only upload (no source included)
────────────────────────────────────────────────────────────────────────────────
-Build finished at 20110208-0905
+Build finished at 20110312-0739
-bwa_0.5.9-1_kfreebsd-i386.changes:
+bwa_0.5.9-2_kfreebsd-i386.changes:
Format: 1.8
-Date: Tue, 08 Feb 2011 16:11:12 +0900
+Date: Fri, 11 Mar 2011 22:49:07 +0100
Source: bwa
Binary: bwa
Architecture: kfreebsd-i386
-Version: 0.5.9-1
+Version: 0.5.9-2
Distribution: sid
Urgency: low
Maintainer: kfreebsd-i386 Build Daemon (field) <buildd_kfreebsd-i386-field at buildd.debian.org>
-Changed-By: Charles Plessy <plessy at debian.org>
+Changed-By: Andreas Tille <tille at debian.org>
Description:
bwa - Burrows-Wheeler Aligner
Changes:
- bwa (0.5.9-1) unstable; urgency=low
+ bwa (0.5.9-2) unstable; urgency=low
.
- * New usptream release
- - Upstream moved to GitHub (debian/upstream-metadata.yaml).
- - Checked copyright; one file was removed (debian/copyright).
- * Migrated the Debian source package to Git (debian/control).
- * Use Debhelper 8 (debian/control, debian/compat).
+ * Watchfile should not regard rc releases.
+ * Drop cdbs in favour of dh
Checksums-Sha1:
- f85dc517c094f0095101c513cd0c58aceb75e6e0 139068 bwa_0.5.9-1_kfreebsd-i386.deb
+ e120aca88dd8638072100f41b989fd737587e737 138384 bwa_0.5.9-2_kfreebsd-i386.deb
Checksums-Sha256:
- 9edf76ef0deff8c372d18caa894fc3be2a8f1935628e4d93d20d3a256b7ee1c6 139068 bwa_0.5.9-1_kfreebsd-i386.deb
+ d13d8a99a6f2910bf58e25bf0b84fe562cff763052534a75e92a18d0204eb94c 138384 bwa_0.5.9-2_kfreebsd-i386.deb
Files:
- 934289b6921938bb9a14f4c76c385246 139068 science optional bwa_0.5.9-1_kfreebsd-i386.deb
+ f361f70e43f7b023f25250a42a0bc785 138384 science optional bwa_0.5.9-2_kfreebsd-i386.deb
┌──────────────────────────────────────────────────────────────────────────────┐
│ Package contents │
└──────────────────────────────────────────────────────────────────────────────┘
-bwa_0.5.9-1_kfreebsd-i386.deb
+bwa_0.5.9-2_kfreebsd-i386.deb
─────────────────────────────
new debian package, version 2.0.
- size 139068 bytes: control archive= 982 bytes.
+ size 138384 bytes: control archive= 985 bytes.
784 bytes, 17 lines control
615 bytes, 10 lines md5sums
Package: bwa
- Version: 0.5.9-1
+ Version: 0.5.9-2
Architecture: kfreebsd-i386
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
Installed-Size: 308
@@ -388,25 +389,25 @@ bwa_0.5.9-1_kfreebsd-i386.deb
to around 100 kbp. Both algorithms do gapped alignment. They are usually more
accurate and faster on queries with low error rates.
-drwxr-xr-x root/root 0 2011-02-08 09:05 ./
-drwxr-xr-x root/root 0 2011-02-08 09:05 ./usr/
-drwxr-xr-x root/root 0 2011-02-08 09:05 ./usr/share/
-drwxr-xr-x root/root 0 2011-02-08 09:05 ./usr/share/doc/
-drwxr-xr-x root/root 0 2011-02-08 09:05 ./usr/share/doc/bwa/
+drwxr-xr-x root/root 0 2011-03-12 07:39 ./
+drwxr-xr-x root/root 0 2011-03-12 07:39 ./usr/
+drwxr-xr-x root/root 0 2011-03-12 07:39 ./usr/bin/
+-rwxr-xr-x root/root 202832 2011-03-12 07:39 ./usr/bin/bwa
+drwxr-xr-x root/root 0 2011-03-12 07:39 ./usr/share/
+drwxr-xr-x root/root 0 2011-03-12 07:39 ./usr/share/bwa/
+-rwxr-xr-x root/root 3176 2011-01-25 00:00 ./usr/share/bwa/solid2fastq.pl
+-rwxr-xr-x root/root 616 2011-01-25 00:00 ./usr/share/bwa/qualfa2fq.pl
+drwxr-xr-x root/root 0 2011-03-12 07:39 ./usr/share/doc/
+drwxr-xr-x root/root 0 2011-03-12 07:39 ./usr/share/doc/bwa/
-rw-r--r-- root/root 5857 2011-01-25 00:00 ./usr/share/doc/bwa/NEWS.gz
-rw-r--r-- root/root 634 2011-01-25 00:00 ./usr/share/doc/bwa/README
-rw-r--r-- root/root 2676 2011-02-08 07:09 ./usr/share/doc/bwa/copyright
-rw-r--r-- root/root 17912 2011-01-25 00:00 ./usr/share/doc/bwa/changelog.gz
-rw-r--r-- root/root 17912 2011-01-25 00:00 ./usr/share/doc/bwa/ChangeLog.gz
--rw-r--r-- root/root 881 2011-02-08 07:11 ./usr/share/doc/bwa/changelog.Debian.gz
-drwxr-xr-x root/root 0 2011-02-08 09:05 ./usr/share/man/
-drwxr-xr-x root/root 0 2011-02-08 09:05 ./usr/share/man/man1/
--rw-r--r-- root/root 7554 2011-02-08 09:05 ./usr/share/man/man1/bwa.1.gz
-drwxr-xr-x root/root 0 2011-02-08 09:05 ./usr/share/bwa/
--rwxr-xr-x root/root 3176 2011-01-25 00:00 ./usr/share/bwa/solid2fastq.pl
--rwxr-xr-x root/root 616 2011-01-25 00:00 ./usr/share/bwa/qualfa2fq.pl
-drwxr-xr-x root/root 0 2011-02-08 09:05 ./usr/bin/
--rwxr-xr-x root/root 202576 2011-02-08 09:05 ./usr/bin/bwa
+-rw-r--r-- root/root 957 2011-03-11 21:54 ./usr/share/doc/bwa/changelog.Debian.gz
+drwxr-xr-x root/root 0 2011-03-12 07:39 ./usr/share/man/
+drwxr-xr-x root/root 0 2011-03-12 07:39 ./usr/share/man/man1/
+-rw-r--r-- root/root 7554 2011-03-12 07:39 ./usr/share/man/man1/bwa.1.gz
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -415,10 +416,9 @@ drwxr-xr-x root/root 0 2011-02-08 09:05 ./usr/bin/
Built successfully
────────────────────────────────────────────────────────────────────────────────
-Purging /var/lib/schroot/mount/sid-ki-sbuild-1297155812-98383/build/buildd-bwa_0.5.9-1-kfreebsd-i386-TdDy_b
-(Reading database ... 13014 files and directories currently installed.)
+Purging /var/lib/schroot/mount/sid-ki-sbuild-1299915477-93817/build/buildd-bwa_0.5.9-2-kfreebsd-i386-ZDb6_f
+(Reading database ... 13135 files and directories currently installed.)
Removing zlib1g-dev ...
-Removing cdbs ...
Removing debhelper ...
Removing po-debconf ...
Removing man-db ...
@@ -437,6 +437,8 @@ Removing libcroco3 ...
Purging configuration files for libcroco3 ...
Removing libmagic1 ...
Purging configuration files for libmagic1 ...
+Removing libpipeline1 ...
+Purging configuration files for libpipeline1 ...
Removing libxml2 ...
Purging configuration files for libxml2 ...
Removing libglib2.0-0 ...
@@ -444,6 +446,6 @@ Purging configuration files for libglib2.0-0 ...
Removing libpcre3 ...
Purging configuration files for libpcre3 ...
────────────────────────────────────────────────────────────────────────────────
-Finished at 20110208-0905
-Build needed 00:01:34, 2294k disc space
+Finished at 20110312-0739
+Build needed 00:01:20, 2470k disc space
diff --git a/mips.log b/mips.log
index bd3f34c..a7dc687 100644
--- a/mips.log
+++ b/mips.log
@@ -1,4 +1,4 @@
-From buildd at corelli.debian.org Fri Feb 11 08:51:35 2011
+From buildd at corelli.debian.org Sun Mar 13 01:31:41 2011
Return-path: <buildd at corelli.debian.org>
Received: from merikanto.debian.org ([2001:858:2:2:216:35ff:fec4:a49a])
from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
@@ -6,61 +6,62 @@ Received: from merikanto.debian.org ([2001:858:2:2:216:35ff:fec4:a49a])
EMAIL=hostmaster at merikanto.debian.org (verified)
by grieg.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
(Exim 4.69) (envelope-from <buildd at corelli.debian.org>)
- id 1Pnoj0-0000Le-CD
- for logs at buildd.debian.org; Fri, 11 Feb 2011 08:51:35 +0000
+ id 1Pya9k-0002Sb-CC
+ for logs at buildd.debian.org; Sun, 13 Mar 2011 01:31:41 +0000
Received: from corelli.debian.org ([2607:f8f0:610:4000:2e0:98ff:fe00:4489])
from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
CN=corelli.debian.org, EMAIL=hostmaster at corelli.debian.org (verified)
by merikanto.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
(Exim 4.69) (envelope-from <buildd at corelli.debian.org>)
- id 1Pnoiy-0002jx-6x; Fri, 11 Feb 2011 08:51:33 +0000
+ id 1Pya9g-0000MC-G3; Sun, 13 Mar 2011 01:31:37 +0000
Received: from buildd by corelli.debian.org with local (Exim 4.69)
(envelope-from <buildd at corelli.debian.org>)
- id 1Pnoiu-0005w9-Uv; Fri, 11 Feb 2011 08:51:29 +0000
+ id 1Pya9c-0002uV-Sd; Sun, 13 Mar 2011 01:31:32 +0000
From: buildd on corelli <buildd at corelli.debian.org>
To: aba at debian.org,logs at buildd.debian.org
-Subject: Log for successful build of bwa_0.5.9-1 on mips (dist=sid)
+Subject: Log for successful build of bwa_0.5.9-2 on mips (dist=sid)
Content-Type: text/plain; charset=UTF-8
Content-Transfer-Encoding: 8bit
-Message-Id: <E1Pnoiu-0005w9-Uv at corelli.debian.org>
-Date: Fri, 11 Feb 2011 08:51:28 +0000
+Message-Id: <E1Pya9c-0002uV-Sd at corelli.debian.org>
+Date: Sun, 13 Mar 2011 01:31:32 +0000
Delivered-To: logs at buildd.debian.org
-sbuild (Debian sbuild) 0.60.0 (23 Feb 2010) on corelli.debian.org
+sbuild (Debian sbuild) 0.60.5 (14 Nov 2010) on corelli.debian.org
╔══════════════════════════════════════════════════════════════════════════════╗
-║ bwa 0.5.9-1 (mips) 11 Feb 2011 08:45 ║
+║ bwa 0.5.9-2 (mips) 13 Mar 2011 01:25 ║
╚══════════════════════════════════════════════════════════════════════════════╝
Package: bwa
-Version: 0.5.9-1
+Version: 0.5.9-2
Architecture: mips
-Chroot Build Dir: /var/lib/schroot/mount/sid-mips-sbuild-dc8f20d6-132a-41bf-8c89-51f580f2ad13/build/buildd-bwa_0.5.9-1-mips-rZRDcv
-Start Time: 20110211-0845
-Get:1 http://mirrors.ece.ubc.ca unstable Release.gpg [835B]
-Ign http://mirrors.ece.ubc.ca/debian/ unstable/contrib Translation-en
-Ign http://mirrors.ece.ubc.ca/debian/ unstable/main Translation-en
-Get:2 http://mirrors.ece.ubc.ca unstable Release [104kB]
-Get:3 http://incoming.debian.org unstable Release.gpg [835B]
-Ign http://incoming.debian.org/debian/ unstable/contrib Translation-en
-Ign http://incoming.debian.org/debian/ unstable/main Translation-en
-Get:4 http://incoming.debian.org Release.gpg [835B]
-Ign http://incoming.debian.org/buildd-unstable/ Translation-en
-Get:5 http://incoming.debian.org unstable Release [104kB]
-Get:6 http://mirrors.ece.ubc.ca unstable/main Sources [4163kB]
-Get:7 http://incoming.debian.org Release [1604B]
-Get:8 http://incoming.debian.org unstable/main Sources [4163kB]
-Get:9 http://mirrors.ece.ubc.ca unstable/contrib Sources [39.1kB]
-Get:10 http://mirrors.ece.ubc.ca unstable/non-free Sources [84.0kB]
-Get:11 http://mirrors.ece.ubc.ca unstable/main mips Packages [6782kB]
-Get:12 http://mirrors.ece.ubc.ca unstable/contrib mips Packages [50.8kB]
-Get:13 http://incoming.debian.org unstable/contrib Sources [39.1kB]
-Get:14 http://incoming.debian.org unstable/non-free Sources [84.0kB]
-Get:15 http://incoming.debian.org unstable/main mips Packages [6782kB]
-Get:16 http://incoming.debian.org unstable/contrib mips Packages [50.8kB]
-Get:17 http://incoming.debian.org Sources [44.1kB]
-Get:18 http://incoming.debian.org Packages [537kB]
-Fetched 23.0MB in 49s (464kB/s)
+Chroot Build Dir: /var/lib/schroot/mount/sid-mips-sbuild-9183f974-7126-491d-a73a-ea69eab80945/build/buildd-bwa_0.5.9-2-mips-1NiyPb
+Start Time: 20110313-0125
+Get:1 http://mirror-ubc.debian.org unstable InRelease [147 kB]
+Get:2 http://incoming.debian.org unstable InRelease [147 kB]
+Get:3 http://mirror-ubc.debian.org unstable/main Sources [4195 kB]
+Ign http://incoming.debian.org InRelease
+Get:4 http://incoming.debian.org Release.gpg [835 B]
+Get:5 http://incoming.debian.org unstable/main Sources [4195 kB]
+Get:6 http://mirror-ubc.debian.org unstable/contrib Sources [38.7 kB]
+Get:7 http://mirror-ubc.debian.org unstable/non-free Sources [81.8 kB]
+Get:8 http://mirror-ubc.debian.org unstable/main mips Packages [6823 kB]
+Get:9 http://mirror-ubc.debian.org unstable/contrib mips Packages [51.9 kB]
+Ign http://mirror-ubc.debian.org unstable/contrib TranslationIndex
+Get:10 http://mirror-ubc.debian.org unstable/main TranslationIndex [2232 B]
+Ign http://mirror-ubc.debian.org unstable/contrib Translation-en
+Get:11 http://incoming.debian.org unstable/contrib Sources [38.7 kB]
+Get:12 http://incoming.debian.org unstable/non-free Sources [81.8 kB]
+Get:13 http://incoming.debian.org unstable/main mips Packages [6823 kB]
+Get:14 http://incoming.debian.org unstable/contrib mips Packages [51.9 kB]
+Ign http://incoming.debian.org unstable/contrib TranslationIndex
+Get:15 http://incoming.debian.org unstable/main TranslationIndex [2232 B]
+Get:16 http://incoming.debian.org Release [1604 B]
+Get:17 http://incoming.debian.org Sources [27.5 kB]
+Get:18 http://incoming.debian.org Packages [367 kB]
+Ign http://incoming.debian.org unstable/contrib Translation-en
+Ign http://incoming.debian.org Translation-en
+Fetched 23.1 MB in 49s (471 kB/s)
Reading package lists...
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -81,30 +82,29 @@ Building dependency tree...
Reading state information...
NOTICE: 'bwa' packaging is maintained in the 'Git' version control system at:
git://git.debian.org/git/debian-med/bwa.git
-Need to get 119kB of source archives.
-Get:1 http://mirrors.ece.ubc.ca/debian/ unstable/main bwa 0.5.9-1 (dsc) [1894B]
-Get:2 http://mirrors.ece.ubc.ca/debian/ unstable/main bwa 0.5.9-1 (tar) [114kB]
-Get:3 http://mirrors.ece.ubc.ca/debian/ unstable/main bwa 0.5.9-1 (diff) [3651B]
-Fetched 119kB in 0s (602kB/s)
+Need to get 119 kB of source archives.
+Get:1 http://mirror-ubc.debian.org/debian/ unstable/main bwa 0.5.9-2 (dsc) [1245 B]
+Get:2 http://mirror-ubc.debian.org/debian/ unstable/main bwa 0.5.9-2 (tar) [114 kB]
+Get:3 http://mirror-ubc.debian.org/debian/ unstable/main bwa 0.5.9-2 (diff) [3828 B]
+Fetched 119 kB in 0s (1608 kB/s)
Download complete and in download only mode
Check arch
──────────
** Using build dependencies supplied by package:
-Build-Depends: cdbs, debhelper (>= 8), zlib1g-dev
+Build-Depends: debhelper (>= 8), zlib1g-dev
┌──────────────────────────────────────────────────────────────────────────────┐
│ Install build dependencies (internal resolver) │
└──────────────────────────────────────────────────────────────────────────────┘
Checking for already installed source dependencies...
-cdbs: missing
debhelper: missing
-Using default version 8.1.1
+Using default version 8.1.2
zlib1g-dev: missing
Checking for source dependency conflicts...
-Installing positive dependencies: cdbs debhelper zlib1g-dev
+Installing positive dependencies: debhelper zlib1g-dev
Reading package lists...
Building dependency tree...
Reading state information...
@@ -113,41 +113,40 @@ The following extra packages will be installed:
libcroco3 libglib2.0-0 libmagic1 libpcre3 libpipeline1 libunistring0 libxml2
man-db po-debconf
Suggested packages:
- wamerican wordlist whois vacation devscripts doc-base dh-make gettext-doc
- groff less www-browser libmail-box-perl
+ wamerican wordlist whois vacation dh-make gettext-doc groff less www-browser
+ libmail-box-perl
Recommended packages:
- autotools-dev curl wget lynx-cur autopoint libglib2.0-data shared-mime-info
- xml-core libmail-sendmail-perl
+ curl wget lynx-cur autopoint libglib2.0-data shared-mime-info xml-core
+ libmail-sendmail-perl
The following NEW packages will be installed:
- bsdmainutils cdbs debhelper file gettext gettext-base groff-base html2text
+ bsdmainutils debhelper file gettext gettext-base groff-base html2text
intltool-debian libcroco3 libglib2.0-0 libmagic1 libpcre3 libpipeline1
libunistring0 libxml2 man-db po-debconf zlib1g-dev
-0 upgraded, 19 newly installed, 0 to remove and 66 not upgraded.
-Need to get 9930kB of archives.
-After this operation, 29.9MB of additional disk space will be used.
-Get:1 http://mirrors.ece.ubc.ca/debian/ unstable/main bsdmainutils mips 8.2.2 [210kB]
-Get:2 http://mirrors.ece.ubc.ca/debian/ unstable/main groff-base mips 1.21-4 [1203kB]
-Get:3 http://mirrors.ece.ubc.ca/debian/ unstable/main libpipeline1 mips 1.1.0-1 [35.1kB]
-Get:4 http://mirrors.ece.ubc.ca/debian/ unstable/main man-db mips 2.5.9-4 [997kB]
-Get:5 http://mirrors.ece.ubc.ca/debian/ unstable/main libmagic1 mips 5.04-5 [239kB]
-Get:6 http://mirrors.ece.ubc.ca/debian/ unstable/main file mips 5.04-5 [49.7kB]
-Get:7 http://mirrors.ece.ubc.ca/debian/ unstable/main gettext-base mips 0.18.1.1-3 [153kB]
-Get:8 http://mirrors.ece.ubc.ca/debian/ unstable/main libpcre3 mips 8.02-1.1 [232kB]
-Get:9 http://mirrors.ece.ubc.ca/debian/ unstable/main libxml2 mips 2.7.8.dfsg-2 [837kB]
-Get:10 http://mirrors.ece.ubc.ca/debian/ unstable/main html2text mips 1.3.2a-15 [103kB]
-Get:11 http://mirrors.ece.ubc.ca/debian/ unstable/main libglib2.0-0 mips 2.24.2-1 [1043kB]
-Get:12 http://mirrors.ece.ubc.ca/debian/ unstable/main libcroco3 mips 0.6.2-1 [110kB]
-Get:13 http://mirrors.ece.ubc.ca/debian/ unstable/main libunistring0 mips 0.9.3-3 [415kB]
-Get:14 http://mirrors.ece.ubc.ca/debian/ unstable/main gettext mips 0.18.1.1-3 [2037kB]
-Get:15 http://mirrors.ece.ubc.ca/debian/ unstable/main intltool-debian all 0.35.0+20060710.1 [30.8kB]
-Get:16 http://mirrors.ece.ubc.ca/debian/ unstable/main po-debconf all 1.0.16+nmu1 [223kB]
-Get:17 http://mirrors.ece.ubc.ca/debian/ unstable/main debhelper all 8.1.1 [552kB]
-Get:18 http://mirrors.ece.ubc.ca/debian/ unstable/main cdbs all 0.4.92 [1268kB]
-Get:19 http://mirrors.ece.ubc.ca/debian/ unstable/main zlib1g-dev mips 1:1.2.3.4.dfsg-3 [191kB]
+0 upgraded, 18 newly installed, 0 to remove and 1 not upgraded.
+Need to get 9149 kB of archives.
+After this operation, 29.3 MB of additional disk space will be used.
+Get:1 http://mirror-ubc.debian.org/debian/ unstable/main bsdmainutils mips 8.2.2 [210 kB]
+Get:2 http://mirror-ubc.debian.org/debian/ unstable/main groff-base mips 1.21-4 [1203 kB]
+Get:3 http://mirror-ubc.debian.org/debian/ unstable/main libpipeline1 mips 1.1.0-1 [35.1 kB]
+Get:4 http://mirror-ubc.debian.org/debian/ unstable/main man-db mips 2.5.9-4 [997 kB]
+Get:5 http://mirror-ubc.debian.org/debian/ unstable/main libmagic1 mips 5.04-5 [239 kB]
+Get:6 http://mirror-ubc.debian.org/debian/ unstable/main file mips 5.04-5 [49.7 kB]
+Get:7 http://mirror-ubc.debian.org/debian/ unstable/main gettext-base mips 0.18.1.1-3 [153 kB]
+Get:8 http://mirror-ubc.debian.org/debian/ unstable/main libpcre3 mips 8.12-3 [262 kB]
+Get:9 http://mirror-ubc.debian.org/debian/ unstable/main libxml2 mips 2.7.8.dfsg-2 [837 kB]
+Get:10 http://mirror-ubc.debian.org/debian/ unstable/main html2text mips 1.3.2a-15 [103 kB]
+Get:11 http://mirror-ubc.debian.org/debian/ unstable/main libglib2.0-0 mips 2.28.2-1 [1501 kB]
+Get:12 http://mirror-ubc.debian.org/debian/ unstable/main libcroco3 mips 0.6.2-1 [110 kB]
+Get:13 http://mirror-ubc.debian.org/debian/ unstable/main libunistring0 mips 0.9.3-3 [415 kB]
+Get:14 http://mirror-ubc.debian.org/debian/ unstable/main gettext mips 0.18.1.1-3 [2037 kB]
+Get:15 http://mirror-ubc.debian.org/debian/ unstable/main intltool-debian mips 0.35.0+20060710.1 [30.8 kB]
+Get:16 http://mirror-ubc.debian.org/debian/ unstable/main po-debconf mips 1.0.16+nmu1 [223 kB]
+Get:17 http://mirror-ubc.debian.org/debian/ unstable/main debhelper mips 8.1.2 [553 kB]
+Get:18 http://mirror-ubc.debian.org/debian/ unstable/main zlib1g-dev mips 1:1.2.3.4.dfsg-3 [191 kB]
debconf: delaying package configuration, since apt-utils is not installed
-Fetched 9930kB in 3s (2887kB/s)
+Fetched 9149 kB in 1s (5325 kB/s)
Selecting previously deselected package bsdmainutils.
-(Reading database ... 10143 files and directories currently installed.)
+(Reading database ... 10228 files and directories currently installed.)
Unpacking bsdmainutils (from .../bsdmainutils_8.2.2_mips.deb) ...
Selecting previously deselected package groff-base.
Unpacking groff-base (from .../groff-base_1.21-4_mips.deb) ...
@@ -162,13 +161,13 @@ Unpacking file (from .../archives/file_5.04-5_mips.deb) ...
Selecting previously deselected package gettext-base.
Unpacking gettext-base (from .../gettext-base_0.18.1.1-3_mips.deb) ...
Selecting previously deselected package libpcre3.
-Unpacking libpcre3 (from .../libpcre3_8.02-1.1_mips.deb) ...
+Unpacking libpcre3 (from .../libpcre3_8.12-3_mips.deb) ...
Selecting previously deselected package libxml2.
Unpacking libxml2 (from .../libxml2_2.7.8.dfsg-2_mips.deb) ...
Selecting previously deselected package html2text.
Unpacking html2text (from .../html2text_1.3.2a-15_mips.deb) ...
Selecting previously deselected package libglib2.0-0.
-Unpacking libglib2.0-0 (from .../libglib2.0-0_2.24.2-1_mips.deb) ...
+Unpacking libglib2.0-0 (from .../libglib2.0-0_2.28.2-1_mips.deb) ...
Selecting previously deselected package libcroco3.
Unpacking libcroco3 (from .../libcroco3_0.6.2-1_mips.deb) ...
Selecting previously deselected package libunistring0.
@@ -176,13 +175,11 @@ Unpacking libunistring0 (from .../libunistring0_0.9.3-3_mips.deb) ...
Selecting previously deselected package gettext.
Unpacking gettext (from .../gettext_0.18.1.1-3_mips.deb) ...
Selecting previously deselected package intltool-debian.
-Unpacking intltool-debian (from .../intltool-debian_0.35.0+20060710.1_all.deb) ...
+Unpacking intltool-debian (from .../intltool-debian_0.35.0+20060710.1_mips.deb) ...
Selecting previously deselected package po-debconf.
-Unpacking po-debconf (from .../po-debconf_1.0.16+nmu1_all.deb) ...
+Unpacking po-debconf (from .../po-debconf_1.0.16+nmu1_mips.deb) ...
Selecting previously deselected package debhelper.
-Unpacking debhelper (from .../debhelper_8.1.1_all.deb) ...
-Selecting previously deselected package cdbs.
-Unpacking cdbs (from .../archives/cdbs_0.4.92_all.deb) ...
+Unpacking debhelper (from .../debhelper_8.1.2_mips.deb) ...
Selecting previously deselected package zlib1g-dev.
Unpacking zlib1g-dev (from .../zlib1g-dev_1%3a1.2.3.4.dfsg-3_mips.deb) ...
Setting up bsdmainutils (8.2.2) ...
@@ -195,23 +192,23 @@ Building database of manual pages ...
Setting up libmagic1 (5.04-5) ...
Setting up file (5.04-5) ...
Setting up gettext-base (0.18.1.1-3) ...
-Setting up libpcre3 (8.02-1.1) ...
+Setting up libpcre3 (8.12-3) ...
Setting up libxml2 (2.7.8.dfsg-2) ...
Setting up html2text (1.3.2a-15) ...
-Setting up libglib2.0-0 (2.24.2-1) ...
+Setting up libglib2.0-0 (2.28.2-1) ...
+No schema files found: doing nothing.
Setting up libcroco3 (0.6.2-1) ...
Setting up libunistring0 (0.9.3-3) ...
Setting up gettext (0.18.1.1-3) ...
Setting up intltool-debian (0.35.0+20060710.1) ...
Setting up po-debconf (1.0.16+nmu1) ...
-Setting up debhelper (8.1.1) ...
-Setting up cdbs (0.4.92) ...
+Setting up debhelper (8.1.2) ...
Setting up zlib1g-dev (1:1.2.3.4.dfsg-3) ...
Removing negative dependencies:
Checking correctness of source dependencies...
Kernel: Linux 2.6.35.4-dsa-octeon mips (mips64)
-Toolchain package versions: libc6-dev_2.11.2-6 dpkg-dev_1.15.8.5 linux-libc-dev_2.6.32-22 gcc-4.4_4.4.4-14 g++-4.4_4.4.4-14 binutils_2.20.1-15 libstdc++6-4.4-dev_4.4.4-14 libstdc++6_4.4.4-14
-Package versions: apt_0.8.5 base-files_5.9 base-passwd_3.5.22 bash_4.1-3 binutils_2.20.1-15 bsdmainutils_8.2.2 bsdutils_1:2.17.2-3.1 build-essential_11.5 bzip2_1.0.5-5 cdbs_0.4.92 coreutils_8.5-1 cpp_4:4.4.4-2 cpp-4.4_4.4.4-14 dash_0.5.5.1-7 debconf_1.5.35 debconf-i18n_1.5.35 debfoster_2.7-1.1 debhelper_8.1.1 debian-archive-keyring_2010.08.28 debianutils_3.4 diffutils_1:3.0-1 dpkg_1.15.8.5 dpkg-dev_1.15.8.5 e2fslibs_1.41.12-2 e2fsprogs_1.41.12-2 fakeroot_1.14.4-1 file_5.04-5 findutils_4.4.2-1 g++_4:4.4.4-2 g++-4.4_4.4.4-14 gcc_4:4.4.4-2 gcc-4.4_4.4.4-14 gcc-4.4-base_4.4.4-14 gettext_0.18.1.1-3 gettext-base_0.18.1.1-3 gnupg_1.4.10-4 gpgv_1.4.10-4 grep_2.6.3-3 groff-base_1.21-4 gzip_1.3.12-9 hostname_3.04 html2text_1.3.2a-15 initscripts_2.88dsf-12 insserv_1.14.0-2 intltool-debian_0.35.0+20060710.1 libacl1_2.2.49-3 libattr1_1:2.4.44-2 libblkid1_2.17.2-3.1 libbz2-1.0_1.0.5-5 libc-bin_2.11.2-6 libc-dev-bin_2.11.2-6 libc6_2.11.2-6 libc6-dev_2.11.2-6 libcomerr2_1.41.12-2 libcroco3_0.6.2-1 libdb4.7_4.7.25-9 libdb4.8_4.8.30-2 libdpkg-perl_1.15.8.5 libgc1c2_1:6.8-1.2 libgcc1_1:4.4.4-14 libgdbm3_1.8.3-9 libglib2.0-0_2.24.2-1 libgmp3c2_2:4.3.2+dfsg-1 libgomp1_4.4.4-14 liblocale-gettext-perl_1.05-6 liblzma2_4.999.9beta+20100810-1 libmagic1_5.04-5 libmpfr1ldbl_2.4.2-3 libmpfr4_3.0.0-2 libncurses5_5.7+20100313-3 libpam-modules_1.1.1-6 libpam-runtime_1.1.1-6 libpam0g_1.1.1-6 libpcre3_8.02-1.1 libpipeline1_1.1.0-1 libreadline6_6.1-3 libselinux1_2.0.96-1 libsepol1_2.0.41-1 libslang2_2.2.2-4 libss2_1.41.12-2 libstdc++6_4.4.4-14 libstdc++6-4.4-dev_4.4.4-14 libtext-charwidth-perl_0.04-6 libtext-iconv-perl_1.7-2 libtext-wrapi18n-perl_0.06-7 libtimedate-perl_1.2000-1 libunistring0_0.9.3-3 libusb-0.1-4_2:0.1.12-16 libuuid1_2.17.2-3.1 libxml2_2.7.8.dfsg-2 linux-libc-dev_2.6.32-22 login_1:4.1.4.2+svn3283-1 lsb-base_3.2-23.1 make_3.81-8 man-db_2.5.9-4 mawk_1.3.3-15 mount_2.17.2-3.1 ncurses-base_5.7+20100313-3 ncurses-bin_5.7+20100313-3 netbase_4.42 passwd_1:4.1.4.2+svn3283-1 patch_2.6-2 perl_5.10.1-14 perl-base_5.10.1-14 perl-modules_5.10.1-14 po-debconf_1.0.16+nmu1 readline-common_6.1-3 sed_4.2.1-7 sensible-utils_0.0.4 sudo_1.7.4p4-2 sysv-rc_2.88dsf-12 sysvinit_2.88dsf-12 sysvinit-utils_2.88dsf-12 tar_1.23-2.1 tzdata_2010l-1 util-linux_2.17.2-3.1 xz-utils_4.999.9beta+20100810-1 zlib1g_1:1.2.3.4.dfsg-3 zlib1g-dev_1:1.2.3.4.dfsg-3
+Toolchain package versions: libc6-dev_2.11.2-11 dpkg-dev_1.15.8.10 linux-libc-dev_2.6.37-2 gcc-4.4_4.4.5-13 g++-4.4_4.4.5-13 binutils_2.21.0.20110302-1 libstdc++6-4.4-dev_4.4.5-13 libstdc++6_4.5.2-5
+Package versions: apt_0.8.12 base-files_6.1 base-passwd_3.5.22 bash_4.1-3 binutils_2.21.0.20110302-1 bsdmainutils_8.2.2 bsdutils_1:2.17.2-9.1 build-essential_11.5 bzip2_1.0.5-6 coreutils_8.5-1 cpp_4:4.4.5-4 cpp-4.4_4.4.5-13 dash_0.5.5.1-7.4 debconf_1.5.38 debconf-i18n_1.5.38 debfoster_2.7-1.1 debhelper_8.1.2 debian-archive-keyring_2010.08.28 debianutils_3.4.4 diffutils_1:3.0-1 dpkg_1.15.8.10 dpkg-dev_1.15.8.10 e2fslibs_1.41.12-2 e2fsprogs_1.41.12-2 fakeroot_1.14.5-2 file_5.04-5 findutils_4.4.2-1+b1 g++_4:4.4.5-4 g++-4.4_4.4.5-13 gcc_4:4.4.5-4 gcc-4.4_4.4.5-13 gcc-4.4-base_4.4.5-13 gcc-4.5-base_4.5.2-5 gettext_0.18.1.1-3 gettext-base_0.18.1.1-3 gnupg_1.4.11-3 gpgv_1.4.11-3 grep_2.6.3-3 groff-base_1.21-4 gzip_1.3.12-9 hostname_3.06 html2text_1.3.2a-15 initscripts_2.88dsf-13.1 insserv_1.14.0-2 intltool-debian_0.35.0+20060710.1 libacl1_2.2.49-4 libattr1_1:2.4.44-2 libblkid1_2.17.2-9.1 libbz2-1.0_1.0.5-6 libc-bin_2.11.2-11 libc-dev-bin_2.11.2-11 libc6_2.11.2-11 libc6-dev_2.11.2-11 libcomerr2_1.41.12-2 libcroco3_0.6.2-1 libdb4.7_4.7.25-12 libdb4.8_4.8.30-5 libdpkg-perl_1.15.8.10 libgc1c2_1:7.1-7 libgcc1_1:4.5.2-5 libgdbm3_1.8.3-9 libglib2.0-0_2.28.2-1 libgmp10_2:5.0.1+dfsg-6 libgmp3c2_2:4.3.2+dfsg-1 libgomp1_4.5.2-5 liblocale-gettext-perl_1.05-6 liblzma2_5.0.0-2 libmagic1_5.04-5 libmpfr1ldbl_2.4.2-3 libmpfr4_3.0.0-9 libncurses5_5.8+20110307-1 libpam-modules_1.1.2-2 libpam-runtime_1.1.2-2 libpam0g_1.1.2-2 libpcre3_8.12-3 libpipeline1_1.1.0-1 libreadline6_6.1-3 libselinux1_2.0.96-1 libsepol1_2.0.42-1 libslang2_2.2.2-4 libss2_1.41.12-2 libstdc++6_4.5.2-5 libstdc++6-4.4-dev_4.4.5-13 libtext-charwidth-perl_0.04-6 libtext-iconv-perl_1.7-2 libtext-wrapi18n-perl_0.06-7 libtimedate-perl_1.2000-1 libunistring0_0.9.3-3 libusb-0.1-4_2:0.1.12-17 libuuid1_2.17.2-9.1 libxml2_2.7.8.dfsg-2 linux-libc-dev_2.6.37-2 login_1:4.1.4.2+svn3283-3 lsb-base_3.2-27 make_3.81-8 man-db_2.5.9-4 mawk_1.3.3-15 mount_2.17.2-9.1 ncurses-base_5.8+20110307-1 ncurses-bin_5.8+20110307-1 netbase_4.45 passwd_1:4.1.4.2+svn3283-3 patch_2.6.1-1 perl_5.10.1-17 perl-base_5.10.1-17 perl-modules_5.10.1-17 po-debconf_1.0.16+nmu1 readline-common_6.1-3 sed_4.2.1-9 sensible-utils_0.0.6 sudo_1.7.4p6-1 sysv-rc_2.88dsf-13.1 sysvinit_2.88dsf-13.1 sysvinit-utils_2.88dsf-13.1 tar_1.25-3 tzdata_2011c-1 util-linux_2.17.2-9.1 xz-utils_5.0.0-2 zlib1g_1:1.2.3.4.dfsg-3 zlib1g-dev_1:1.2.3.4.dfsg-3
┌──────────────────────────────────────────────────────────────────────────────┐
│ Build │
@@ -223,12 +220,12 @@ Unpack source
dpkg-source: warning: -sn is not a valid option for Dpkg::Source::Package::V3::quilt
gpgv: keyblock resource `/home/buildd/.gnupg/trustedkeys.gpg': file open error
-gpgv: Signature made Tue Feb 8 07:20:43 2011 UTC using RSA key ID 2295D502
+gpgv: Signature made Fri Mar 11 21:59:41 2011 UTC using DSA key ID C09FD35A
gpgv: Can't check signature: public key not found
-dpkg-source: warning: failed to verify signature on ./bwa_0.5.9-1.dsc
+dpkg-source: warning: failed to verify signature on ./bwa_0.5.9-2.dsc
dpkg-source: info: extracting bwa in bwa-0.5.9
dpkg-source: info: unpacking bwa_0.5.9.orig.tar.bz2
-dpkg-source: info: unpacking bwa_0.5.9-1.debian.tar.gz
+dpkg-source: info: unpacking bwa_0.5.9-2.debian.tar.gz
Check disc space
────────────────
@@ -243,155 +240,155 @@ dpkg-buildpackage: export CXXFLAGS from dpkg-buildflags (origin: vendor): -g -O2
dpkg-buildpackage: export FFLAGS from dpkg-buildflags (origin: vendor): -g -O2
dpkg-buildpackage: export LDFLAGS from dpkg-buildflags (origin: vendor):
dpkg-buildpackage: source package bwa
-dpkg-buildpackage: source version 0.5.9-1
+dpkg-buildpackage: source version 0.5.9-2
dpkg-source --before-build bwa-0.5.9
dpkg-buildpackage: host architecture mips
/usr/bin/fakeroot debian/rules clean
-test -x debian/rules
-dh_testroot
-rm -f debian/stamp-makefile-build debian/stamp-makefile-install
-/usr/bin/make -C . CFLAGS="-g -O2 -g -O2" CXXFLAGS="-g -O2 -g -O2" CPPFLAGS="" LDFLAGS="" -k clean
-make[1]: Entering directory `/build/buildd-bwa_0.5.9-1-mips-rZRDcv/bwa-0.5.9'
-make[2]: Entering directory `/build/buildd-bwa_0.5.9-1-mips-rZRDcv/bwa-0.5.9'
+dh clean
+ dh_testdir
+ dh_auto_clean
+make[1]: Entering directory `/build/buildd-bwa_0.5.9-2-mips-1NiyPb/bwa-0.5.9'
+make[2]: Entering directory `/build/buildd-bwa_0.5.9-2-mips-1NiyPb/bwa-0.5.9'
rm -f gmon.out *.o a.out bwa *~ *.a
-make[2]: Leaving directory `/build/buildd-bwa_0.5.9-1-mips-rZRDcv/bwa-0.5.9'
-make[2]: Entering directory `/build/buildd-bwa_0.5.9-1-mips-rZRDcv/bwa-0.5.9/bwt_gen'
+make[2]: Leaving directory `/build/buildd-bwa_0.5.9-2-mips-1NiyPb/bwa-0.5.9'
+make[2]: Entering directory `/build/buildd-bwa_0.5.9-2-mips-1NiyPb/bwa-0.5.9/bwt_gen'
rm -f gmon.out *.o a.out *~ *.a
-make[2]: Leaving directory `/build/buildd-bwa_0.5.9-1-mips-rZRDcv/bwa-0.5.9/bwt_gen'
-make[1]: Leaving directory `/build/buildd-bwa_0.5.9-1-mips-rZRDcv/bwa-0.5.9'
-dh_clean
+make[2]: Leaving directory `/build/buildd-bwa_0.5.9-2-mips-1NiyPb/bwa-0.5.9/bwt_gen'
+make[1]: Leaving directory `/build/buildd-bwa_0.5.9-2-mips-1NiyPb/bwa-0.5.9'
+ dh_clean
debian/rules build
-test -x debian/rules
-mkdir -p "."
-/usr/bin/make -C . CFLAGS="-g -O2 -g -O2" CXXFLAGS="-g -O2 -g -O2" CPPFLAGS="" LDFLAGS=""
-make[1]: Entering directory `/build/buildd-bwa_0.5.9-1-mips-rZRDcv/bwa-0.5.9'
-make[2]: Entering directory `/build/buildd-bwa_0.5.9-1-mips-rZRDcv/bwa-0.5.9'
+dh build
+ dh_testdir
+ dh_auto_configure
+ dh_auto_build
+make[1]: Entering directory `/build/buildd-bwa_0.5.9-2-mips-1NiyPb/bwa-0.5.9'
+make[2]: Entering directory `/build/buildd-bwa_0.5.9-2-mips-1NiyPb/bwa-0.5.9'
make[2]: Nothing to be done for `lib'.
-make[2]: Leaving directory `/build/buildd-bwa_0.5.9-1-mips-rZRDcv/bwa-0.5.9'
-make[2]: Entering directory `/build/buildd-bwa_0.5.9-1-mips-rZRDcv/bwa-0.5.9/bwt_gen'
-gcc -c -g -O2 -g -O2 -DHAVE_PTHREAD bwt_gen.c -o bwt_gen.o
-gcc -c -g -O2 -g -O2 -DHAVE_PTHREAD QSufSort.c -o QSufSort.o
+make[2]: Leaving directory `/build/buildd-bwa_0.5.9-2-mips-1NiyPb/bwa-0.5.9'
+make[2]: Entering directory `/build/buildd-bwa_0.5.9-2-mips-1NiyPb/bwa-0.5.9/bwt_gen'
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD bwt_gen.c -o bwt_gen.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD QSufSort.c -o QSufSort.o
ar -cru libbwtgen.a bwt_gen.o QSufSort.o
-make[2]: Leaving directory `/build/buildd-bwa_0.5.9-1-mips-rZRDcv/bwa-0.5.9/bwt_gen'
-gcc -c -g -O2 -g -O2 -DHAVE_PTHREAD utils.c -o utils.o
-gcc -c -g -O2 -g -O2 -DHAVE_PTHREAD bwt.c -o bwt.o
-gcc -c -g -O2 -g -O2 -DHAVE_PTHREAD bwtio.c -o bwtio.o
-gcc -c -g -O2 -g -O2 -DHAVE_PTHREAD bwtaln.c -o bwtaln.o
-gcc -c -g -O2 -g -O2 -DHAVE_PTHREAD bwtgap.c -o bwtgap.o
-gcc -c -g -O2 -g -O2 -DHAVE_PTHREAD is.c -o is.o
-gcc -c -g -O2 -g -O2 -DHAVE_PTHREAD bntseq.c -o bntseq.o
-gcc -c -g -O2 -g -O2 -DHAVE_PTHREAD bwtmisc.c -o bwtmisc.o
-gcc -c -g -O2 -g -O2 -DHAVE_PTHREAD bwtindex.c -o bwtindex.o
-gcc -c -g -O2 -g -O2 -DHAVE_PTHREAD stdaln.c -o stdaln.o
-gcc -c -g -O2 -g -O2 -DHAVE_PTHREAD simple_dp.c -o simple_dp.o
-gcc -c -g -O2 -g -O2 -DHAVE_PTHREAD bwaseqio.c -o bwaseqio.o
-gcc -c -g -O2 -g -O2 -DHAVE_PTHREAD bwase.c -o bwase.o
-gcc -c -g -O2 -g -O2 -DHAVE_PTHREAD bwape.c -o bwape.o
-gcc -c -g -O2 -g -O2 -DHAVE_PTHREAD kstring.c -o kstring.o
-gcc -c -g -O2 -g -O2 -DHAVE_PTHREAD cs2nt.c -o cs2nt.o
-gcc -c -g -O2 -g -O2 -DHAVE_PTHREAD bwtsw2_core.c -o bwtsw2_core.o
-gcc -c -g -O2 -g -O2 -DHAVE_PTHREAD bwtsw2_main.c -o bwtsw2_main.o
-gcc -c -g -O2 -g -O2 -DHAVE_PTHREAD bwtsw2_aux.c -o bwtsw2_aux.o
-gcc -c -g -O2 -g -O2 -DHAVE_PTHREAD bwt_lite.c -o bwt_lite.o
-gcc -c -g -O2 -g -O2 -DHAVE_PTHREAD bwtsw2_chain.c -o bwtsw2_chain.o
-gcc -c -g -O2 -g -O2 -DHAVE_PTHREAD bamlite.c -o bamlite.o
-gcc -c -g -O2 -g -O2 -DHAVE_PTHREAD main.c -o main.o
-gcc -g -O2 -g -O2 -DHAVE_PTHREAD utils.o bwt.o bwtio.o bwtaln.o bwtgap.o is.o bntseq.o bwtmisc.o bwtindex.o stdaln.o simple_dp.o bwaseqio.o bwase.o bwape.o kstring.o cs2nt.o bwtsw2_core.o bwtsw2_main.o bwtsw2_aux.o bwt_lite.o bwtsw2_chain.o bamlite.o main.o -o bwa -lm -lz -lpthread -Lbwt_gen -lbwtgen
-make[1]: Leaving directory `/build/buildd-bwa_0.5.9-1-mips-rZRDcv/bwa-0.5.9'
-touch debian/stamp-makefile-build
-DEB_MAKE_CHECK_TARGET unset, not running checks
+make[2]: Leaving directory `/build/buildd-bwa_0.5.9-2-mips-1NiyPb/bwa-0.5.9/bwt_gen'
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD utils.c -o utils.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD bwt.c -o bwt.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD bwtio.c -o bwtio.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD bwtaln.c -o bwtaln.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD bwtgap.c -o bwtgap.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD is.c -o is.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD bntseq.c -o bntseq.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD bwtmisc.c -o bwtmisc.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD bwtindex.c -o bwtindex.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD stdaln.c -o stdaln.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD simple_dp.c -o simple_dp.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD bwaseqio.c -o bwaseqio.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD bwase.c -o bwase.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD bwape.c -o bwape.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD kstring.c -o kstring.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD cs2nt.c -o cs2nt.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD bwtsw2_core.c -o bwtsw2_core.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD bwtsw2_main.c -o bwtsw2_main.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD bwtsw2_aux.c -o bwtsw2_aux.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD bwt_lite.c -o bwt_lite.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD bwtsw2_chain.c -o bwtsw2_chain.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD bamlite.c -o bamlite.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD main.c -o main.o
+gcc -g -Wall -O2 -DHAVE_PTHREAD utils.o bwt.o bwtio.o bwtaln.o bwtgap.o is.o bntseq.o bwtmisc.o bwtindex.o stdaln.o simple_dp.o bwaseqio.o bwase.o bwape.o kstring.o cs2nt.o bwtsw2_core.o bwtsw2_main.o bwtsw2_aux.o bwt_lite.o bwtsw2_chain.o bamlite.o main.o -o bwa -lm -lz -lpthread -Lbwt_gen -lbwtgen
+make[1]: Leaving directory `/build/buildd-bwa_0.5.9-2-mips-1NiyPb/bwa-0.5.9'
+ dh_auto_test
/usr/bin/fakeroot debian/rules binary-arch
-test -x debian/rules
-dh_testroot
-dh_prep
-dh_installdirs -A
-mkdir -p "."
-DEB_MAKE_CHECK_TARGET unset, not running checks
-DEB_MAKE_INSTALL_TARGET unset, skipping default makefile.mk common-install target
-Adding cdbs dependencies to debian/bwa.substvars
-dh_installdirs -pbwa
-dh_installdocs -pbwa ./README ./NEWS
-dh_installexamples -pbwa
-dh_installman -pbwa
-dh_installinfo -pbwa
-dh_installmenu -pbwa
-dh_installcron -pbwa
-dh_installinit -pbwa
-dh_installdebconf -pbwa
-dh_installemacsen -pbwa
-dh_installcatalogs -pbwa
-dh_installpam -pbwa
-dh_installlogrotate -pbwa
-dh_installlogcheck -pbwa
-dh_installchangelogs -pbwa ./ChangeLog
-dh_installudev -pbwa
-dh_lintian -pbwa
-dh_bugfiles -pbwa
-dh_install -pbwa
-dh_link -pbwa
-dh_installmime -pbwa
-dh_strip -pbwa
-dh_compress -pbwa
-dh_fixperms -pbwa
-dh_makeshlibs -pbwa
-dh_installdeb -pbwa
-dh_perl -pbwa
-dh_shlibdeps -pbwa
-dh_gencontrol -pbwa
+dh binary-arch
+ dh_testroot -a
+ dh_prep -a
+ dh_installdirs -a
+ dh_auto_install -a
+ dh_install -a
+ dh_installdocs -a
+ dh_installchangelogs -a
+ dh_installexamples -a
+ dh_installman -a
+ dh_installcatalogs -a
+ dh_installcron -a
+ dh_installdebconf -a
+ dh_installemacsen -a
+ dh_installifupdown -a
+ dh_installinfo -a
+ dh_installinit -a
+ dh_installmenu -a
+ dh_installmime -a
+ dh_installmodules -a
+ dh_installlogcheck -a
+ dh_installlogrotate -a
+ dh_installpam -a
+ dh_installppp -a
+ dh_installudev -a
+ dh_installwm -a
+ dh_installxfonts -a
+ dh_bugfiles -a
+ dh_lintian -a
+ dh_gconf -a
+ dh_icons -a
+ dh_perl -a
+ dh_usrlocal -a
+ dh_link -a
+ dh_compress -a
+ dh_fixperms -a
+ dh_strip -a
+ dh_makeshlibs -a
+ dh_shlibdeps -a
+ dh_installdeb -a
+ dh_gencontrol -a
dpkg-gencontrol: warning: package bwa: unused substitution variable ${perl:Depends}
-dh_md5sums -pbwa
-dh_builddeb -pbwa
-dpkg-deb: building package `bwa' in `../bwa_0.5.9-1_mips.deb'.
- dpkg-genchanges -B -mmips Build Daemon (corelli) <buildd_mips-corelli at buildd.debian.org> >../bwa_0.5.9-1_mips.changes
+ dh_md5sums -a
+ dh_builddeb -a
+dpkg-deb: building package `bwa' in `../bwa_0.5.9-2_mips.deb'.
+ dpkg-genchanges -B -mmips Build Daemon (corelli) <buildd_mips-corelli at buildd.debian.org> >../bwa_0.5.9-2_mips.changes
dpkg-genchanges: arch-specific upload - not including arch-independent packages
dpkg-genchanges: binary-only upload - not including any source code
dpkg-source --after-build bwa-0.5.9
dpkg-buildpackage: binary only upload (no source included)
────────────────────────────────────────────────────────────────────────────────
-Build finished at 20110211-0851
+Build finished at 20110313-0131
-bwa_0.5.9-1_mips.changes:
+bwa_0.5.9-2_mips.changes:
Format: 1.8
-Date: Tue, 08 Feb 2011 16:11:12 +0900
+Date: Fri, 11 Mar 2011 22:49:07 +0100
Source: bwa
Binary: bwa
Architecture: mips
-Version: 0.5.9-1
+Version: 0.5.9-2
Distribution: sid
Urgency: low
Maintainer: mips Build Daemon (corelli) <buildd_mips-corelli at buildd.debian.org>
-Changed-By: Charles Plessy <plessy at debian.org>
+Changed-By: Andreas Tille <tille at debian.org>
Description:
bwa - Burrows-Wheeler Aligner
Changes:
- bwa (0.5.9-1) unstable; urgency=low
+ bwa (0.5.9-2) unstable; urgency=low
.
- * New usptream release
- - Upstream moved to GitHub (debian/upstream-metadata.yaml).
- - Checked copyright; one file was removed (debian/copyright).
- * Migrated the Debian source package to Git (debian/control).
- * Use Debhelper 8 (debian/control, debian/compat).
+ * Watchfile should not regard rc releases.
+ * Drop cdbs in favour of dh
Checksums-Sha1:
- 9cb95ba0ae3404fcf08dbce8baa7eefa244a9ebe 156394 bwa_0.5.9-1_mips.deb
+ c5437041d22b5e1fe49983448ea8711a949251b2 156412 bwa_0.5.9-2_mips.deb
Checksums-Sha256:
- aed4284dda62177fa6e094dcf2b6f7ed2117b09eded1c1afa7fbbcaa5d480d62 156394 bwa_0.5.9-1_mips.deb
+ a391ed4a1f572d4f6e06debccd45df03ed031aa915be4da5770be607662caf54 156412 bwa_0.5.9-2_mips.deb
Files:
- f35b7841db06325c03b56d0d8ab231c0 156394 science optional bwa_0.5.9-1_mips.deb
+ a2f48120c41a8dcd663df7bd319cbf2f 156412 science optional bwa_0.5.9-2_mips.deb
┌──────────────────────────────────────────────────────────────────────────────┐
│ Package contents │
└──────────────────────────────────────────────────────────────────────────────┘
-bwa_0.5.9-1_mips.deb
+bwa_0.5.9-2_mips.deb
────────────────────
new debian package, version 2.0.
- size 156394 bytes: control archive= 974 bytes.
+ size 156412 bytes: control archive= 976 bytes.
773 bytes, 17 lines control
615 bytes, 10 lines md5sums
Package: bwa
- Version: 0.5.9-1
+ Version: 0.5.9-2
Architecture: mips
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
Installed-Size: 372
@@ -408,25 +405,25 @@ bwa_0.5.9-1_mips.deb
to around 100 kbp. Both algorithms do gapped alignment. They are usually more
accurate and faster on queries with low error rates.
-drwxr-xr-x root/root 0 2011-02-11 08:50 ./
-drwxr-xr-x root/root 0 2011-02-11 08:50 ./usr/
-drwxr-xr-x root/root 0 2011-02-11 08:50 ./usr/share/
-drwxr-xr-x root/root 0 2011-02-11 08:50 ./usr/share/bwa/
+drwxr-xr-x root/root 0 2011-03-13 01:30 ./
+drwxr-xr-x root/root 0 2011-03-13 01:30 ./usr/
+drwxr-xr-x root/root 0 2011-03-13 01:30 ./usr/share/
+drwxr-xr-x root/root 0 2011-03-13 01:30 ./usr/share/bwa/
-rwxr-xr-x root/root 616 2011-01-25 00:00 ./usr/share/bwa/qualfa2fq.pl
-rwxr-xr-x root/root 3176 2011-01-25 00:00 ./usr/share/bwa/solid2fastq.pl
-drwxr-xr-x root/root 0 2011-02-11 08:50 ./usr/share/man/
-drwxr-xr-x root/root 0 2011-02-11 08:50 ./usr/share/man/man1/
--rw-r--r-- root/root 7554 2011-02-11 08:50 ./usr/share/man/man1/bwa.1.gz
-drwxr-xr-x root/root 0 2011-02-11 08:50 ./usr/share/doc/
-drwxr-xr-x root/root 0 2011-02-11 08:50 ./usr/share/doc/bwa/
+drwxr-xr-x root/root 0 2011-03-13 01:30 ./usr/share/man/
+drwxr-xr-x root/root 0 2011-03-13 01:30 ./usr/share/man/man1/
+-rw-r--r-- root/root 7554 2011-03-13 01:30 ./usr/share/man/man1/bwa.1.gz
+drwxr-xr-x root/root 0 2011-03-13 01:30 ./usr/share/doc/
+drwxr-xr-x root/root 0 2011-03-13 01:30 ./usr/share/doc/bwa/
-rw-r--r-- root/root 17912 2011-01-25 00:00 ./usr/share/doc/bwa/ChangeLog.gz
-rw-r--r-- root/root 17912 2011-01-25 00:00 ./usr/share/doc/bwa/changelog.gz
--rw-r--r-- root/root 881 2011-02-08 07:11 ./usr/share/doc/bwa/changelog.Debian.gz
+-rw-r--r-- root/root 957 2011-03-11 21:54 ./usr/share/doc/bwa/changelog.Debian.gz
-rw-r--r-- root/root 634 2011-01-25 00:00 ./usr/share/doc/bwa/README
-rw-r--r-- root/root 2676 2011-02-08 07:09 ./usr/share/doc/bwa/copyright
-rw-r--r-- root/root 5857 2011-01-25 00:00 ./usr/share/doc/bwa/NEWS.gz
-drwxr-xr-x root/root 0 2011-02-11 08:50 ./usr/bin/
--rwxr-xr-x root/root 254656 2011-02-11 08:50 ./usr/bin/bwa
+drwxr-xr-x root/root 0 2011-03-13 01:30 ./usr/bin/
+-rwxr-xr-x root/root 254656 2011-03-13 01:30 ./usr/bin/bwa
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -435,77 +432,74 @@ drwxr-xr-x root/root 0 2011-02-11 08:50 ./usr/bin/
Built successfully
────────────────────────────────────────────────────────────────────────────────
-Purging /var/lib/schroot/mount/sid-mips-sbuild-dc8f20d6-132a-41bf-8c89-51f580f2ad13/build/buildd-bwa_0.5.9-1-mips-rZRDcv
+Purging /var/lib/schroot/mount/sid-mips-sbuild-9183f974-7126-491d-a73a-ea69eab80945/build/buildd-bwa_0.5.9-2-mips-1NiyPb
Not removing build depends: cloned chroot in use
────────────────────────────────────────────────────────────────────────────────
-Finished at 20110211-0851
-Build needed 00:06:20, 2712k disc space
-
-From buildd at monteverdi.ayous.org Tue Feb 08 13:45:51 2011
-Return-path: <buildd at monteverdi.ayous.org>
-Received: from monteverdi.ayous.org ([2001:a60:f006:deb:20a:1ff:fe00:987])
- by grieg.debian.org with esmtp (Exim 4.69)
- (envelope-from <buildd at monteverdi.ayous.org>) id 1Pmnt7-0001hr-Vu
- for logs at buildd.debian.org; Tue, 08 Feb 2011 13:45:50 +0000
-Received: from buildd by monteverdi.ayous.org with local (Exim 4.69)
- (envelope-from <buildd at monteverdi.ayous.org>)
- id 1PmnT1-0005yZ-Ga; Tue, 08 Feb 2011 13:18:51 +0000
-From: buildd on monteverdi <buildd at monteverdi.ayous.org>
-To: aba+buildd_monteverdi at not.so.argh.org,logs at buildd.debian.org
-Subject: Log for successful build of bwa_0.5.9-1 on mipsel (dist=sid)
+Finished at 20110313-0131
+Build needed 00:06:00, 2712k disc space
+
+From buildd at mayer.debian.org Sat Mar 12 08:10:20 2011
+Return-path: <buildd at mayer.debian.org>
+Received: from kokkonen.debian.org ([2001:41b8:202:deb:216:35ff:fec4:6340])
+ from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
+ CN=kokkonen.debian.org,
+ EMAIL=hostmaster at kokkonen.debian.org (verified)
+ by grieg.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
+ (Exim 4.69) (envelope-from <buildd at mayer.debian.org>)
+ id 1PyJu0-00063I-4F
+ for logs at buildd.debian.org; Sat, 12 Mar 2011 08:10:20 +0000
+Received: from mayer.debian.org ([140.211.166.78])
+ from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
+ CN=mayer.debian.org, EMAIL=hostmaster at mayer.debian.org (verified)
+ by kokkonen.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
+ (Exim 4.69) (envelope-from <buildd at mayer.debian.org>)
+ id 1PyJty-0005kU-9T
+ for logs at buildd.debian.org; Sat, 12 Mar 2011 08:10:18 +0000
+Received: from buildd by mayer.debian.org with local (Exim 4.69)
+ (envelope-from <buildd at mayer.debian.org>)
+ id 1PyJtv-0007El-0z; Sat, 12 Mar 2011 08:10:15 +0000
+From: buildd on mayer <buildd at mayer.debian.org>
+To: buildd-porters at mayer.debian.org,logs at buildd.debian.org
+Subject: Log for successful build of bwa_0.5.9-2 on mipsel (dist=sid)
Content-Type: text/plain; charset=UTF-8
Content-Transfer-Encoding: 8bit
-Message-Id: <E1PmnT1-0005yZ-Ga at monteverdi.ayous.org>
-Date: Tue, 08 Feb 2011 13:18:51 +0000
+Message-Id: <E1PyJtv-0007El-0z at mayer.debian.org>
+Date: Sat, 12 Mar 2011 08:10:15 +0000
Delivered-To: logs at buildd.debian.org
-sbuild (Debian sbuild) 0.60.0 (23 Feb 2010) on monteverdi.ayous.org
+sbuild (Debian sbuild) 0.60.5 (14 Nov 2010) on mayer.debian.org
╔══════════════════════════════════════════════════════════════════════════════╗
-║ bwa 0.5.9-1 (mipsel) 08 Feb 2011 13:14 ║
+║ bwa 0.5.9-2 (mipsel) 12 Mar 2011 08:08 ║
╚══════════════════════════════════════════════════════════════════════════════╝
Package: bwa
-Version: 0.5.9-1
+Version: 0.5.9-2
Architecture: mipsel
-Chroot Build Dir: /var/lib/schroot/mount/sid-mipsel-sbuild-8a96403e-aef9-4007-9c02-1fefc0fbb7d8/build/buildd-bwa_0.5.9-1-mipsel-9vjpUu
-Start Time: 20110208-1314
-Get:1 http://incoming.debian.org unstable Release.gpg [835 B]
-Ign http://incoming.debian.org/debian/ unstable/contrib Translation-en
-Ign http://incoming.debian.org/debian/ unstable/main Translation-en
-Get:2 http://incoming.debian.org Release.gpg [835 B]
-Ign http://incoming.debian.org/buildd-unstable/ Translation-en
-Get:3 http://mirror.ayous.org unstable Release.gpg [835 B]
-Get:4 http://incoming.debian.org unstable Release [104 kB]
-Ign http://mirror.ayous.org/debian/ unstable/contrib Translation-en
-Ign http://mirror.ayous.org/debian/ unstable/main Translation-en
-Get:5 http://mirror.ayous.org unstable Release [104 kB]
-Get:6 http://incoming.debian.org Release [1604 B]
-Ign http://incoming.debian.org unstable/main Sources
-Ign http://incoming.debian.org unstable/contrib Sources
-Ign http://incoming.debian.org unstable/non-free Sources
-Ign http://incoming.debian.org unstable/main mipsel Packages
-Ign http://incoming.debian.org unstable/contrib mipsel Packages
-Ign http://mirror.ayous.org unstable/main Sources
-Ign http://mirror.ayous.org unstable/contrib Sources
-Ign http://mirror.ayous.org unstable/non-free Sources
-Ign http://mirror.ayous.org unstable/main mipsel Packages
-Ign http://mirror.ayous.org unstable/contrib mipsel Packages
-Get:7 http://incoming.debian.org unstable/main Sources [5298 kB]
-Get:8 http://mirror.ayous.org unstable/main Sources [5298 kB]
-Get:9 http://mirror.ayous.org unstable/contrib Sources [46.1 kB]
-Get:10 http://incoming.debian.org unstable/contrib Sources [46.1 kB]
-Get:11 http://mirror.ayous.org unstable/non-free Sources [100 kB]
-Get:12 http://incoming.debian.org unstable/non-free Sources [100 kB]
-Get:13 http://mirror.ayous.org unstable/main mipsel Packages [8929 kB]
-Get:14 http://incoming.debian.org unstable/main mipsel Packages [8929 kB]
-Get:15 http://mirror.ayous.org unstable/contrib mipsel Packages [61.3 kB]
-Get:16 http://incoming.debian.org unstable/contrib mipsel Packages [61.3 kB]
-Ign http://incoming.debian.org Sources
-Ign http://incoming.debian.org Packages
-Get:17 http://incoming.debian.org Sources [60.0 kB]
-Get:18 http://incoming.debian.org Packages [1020 kB]
-Fetched 30.2 MB in 51s (588 kB/s)
+Chroot Build Dir: /var/lib/schroot/mount/sid-mipsel-sbuild-9a01b7d6-45b0-4c77-98ec-f57807330914/build/buildd-bwa_0.5.9-2-mipsel-OgcXgn
+Start Time: 20110312-0808
+Hit http://debian.oregonstate.edu sid InRelease
+Hit http://debian.oregonstate.edu sid/main Sources
+Hit http://debian.oregonstate.edu sid/contrib Sources
+Hit http://debian.oregonstate.edu sid/main mipsel Packages
+Hit http://debian.oregonstate.edu sid/contrib mipsel Packages
+Ign http://debian.oregonstate.edu sid/contrib TranslationIndex
+Hit http://debian.oregonstate.edu sid/main TranslationIndex
+Ign http://debian.oregonstate.edu sid/contrib Translation-en
+Hit http://incoming.debian.org sid InRelease
+Ign http://incoming.debian.org InRelease
+Hit http://incoming.debian.org Release.gpg
+Hit http://incoming.debian.org sid/main Sources
+Hit http://incoming.debian.org sid/contrib Sources
+Hit http://incoming.debian.org sid/main mipsel Packages
+Hit http://incoming.debian.org sid/contrib mipsel Packages
+Ign http://incoming.debian.org sid/contrib TranslationIndex
+Hit http://incoming.debian.org sid/main TranslationIndex
+Hit http://incoming.debian.org Release
+Hit http://incoming.debian.org Sources
+Hit http://incoming.debian.org Packages
+Ign http://incoming.debian.org sid/contrib Translation-en
+Ign http://incoming.debian.org Translation-en
Reading package lists...
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -527,132 +521,32 @@ Reading state information...
NOTICE: 'bwa' packaging is maintained in the 'Git' version control system at:
git://git.debian.org/git/debian-med/bwa.git
Need to get 119 kB of source archives.
-Get:1 http://incoming.debian.org/buildd-unstable/ bwa 0.5.9-1 (dsc) [1894 B]
-Get:2 http://incoming.debian.org/buildd-unstable/ bwa 0.5.9-1 (tar) [114 kB]
-Get:3 http://incoming.debian.org/buildd-unstable/ bwa 0.5.9-1 (diff) [3651 B]
-Fetched 119 kB in 2s (53.5 kB/s)
+Get:1 http://incoming.debian.org/buildd-unstable/ bwa 0.5.9-2 (dsc) [1245 B]
+Get:2 http://incoming.debian.org/buildd-unstable/ bwa 0.5.9-2 (tar) [114 kB]
+Get:3 http://incoming.debian.org/buildd-unstable/ bwa 0.5.9-2 (diff) [3828 B]
+Fetched 119 kB in 0s (204 kB/s)
Download complete and in download only mode
Check arch
──────────
** Using build dependencies supplied by package:
-Build-Depends: cdbs, debhelper (>= 8), zlib1g-dev
+Build-Depends: debhelper (>= 8), zlib1g-dev
┌──────────────────────────────────────────────────────────────────────────────┐
│ Install build dependencies (internal resolver) │
└──────────────────────────────────────────────────────────────────────────────┘
Checking for already installed source dependencies...
-cdbs: missing
-debhelper: missing
-Using default version 8.1.0
-zlib1g-dev: missing
+debhelper: already installed (8.1.2 >= 8 is satisfied)
+zlib1g-dev: already installed (1:1.2.3.4.dfsg-3)
Checking for source dependency conflicts...
-Installing positive dependencies: cdbs debhelper zlib1g-dev
-Reading package lists...
-Building dependency tree...
-Reading state information...
-The following extra packages will be installed:
- bsdmainutils file gettext gettext-base groff-base html2text intltool-debian
- libcroco3 libglib2.0-0 libmagic1 libpcre3 libunistring0 libxml2 man-db
- po-debconf
-Suggested packages:
- wamerican wordlist whois vacation devscripts doc-base dh-make gettext-doc
- groff less www-browser libmail-box-perl
-Recommended packages:
- autotools-dev curl wget lynx-cur autopoint libglib2.0-data shared-mime-info
- xml-core libmail-sendmail-perl
-The following NEW packages will be installed:
- bsdmainutils cdbs debhelper file gettext gettext-base groff-base html2text
- intltool-debian libcroco3 libglib2.0-0 libmagic1 libpcre3 libunistring0
- libxml2 man-db po-debconf zlib1g-dev
-0 upgraded, 18 newly installed, 0 to remove and 60 not upgraded.
-Need to get 10.1 MB of archives.
-After this operation, 30.5 MB of additional disk space will be used.
-Get:1 http://incoming.debian.org/buildd-unstable/ cdbs 0.4.92 [1268 kB]
-Get:2 http://mirror.ayous.org/debian/ unstable/main bsdmainutils mipsel 8.2.2 [207 kB]
-Get:3 http://mirror.ayous.org/debian/ unstable/main groff-base mipsel 1.20.1-10 [1188 kB]
-Get:4 http://mirror.ayous.org/debian/ unstable/main man-db mipsel 2.5.7-8 [1248 kB]
-Get:5 http://mirror.ayous.org/debian/ unstable/main libmagic1 mipsel 5.04-5 [238 kB]
-Get:6 http://mirror.ayous.org/debian/ unstable/main file mipsel 5.04-5 [49.5 kB]
-Get:7 http://mirror.ayous.org/debian/ unstable/main gettext-base mipsel 0.18.1.1-3 [152 kB]
-Get:8 http://mirror.ayous.org/debian/ unstable/main libpcre3 mipsel 8.02-1.1 [233 kB]
-Get:9 http://mirror.ayous.org/debian/ unstable/main libxml2 mipsel 2.7.8.dfsg-2 [833 kB]
-Get:10 http://mirror.ayous.org/debian/ unstable/main html2text mipsel 1.3.2a-15 [103 kB]
-Get:11 http://mirror.ayous.org/debian/ unstable/main libglib2.0-0 mipsel 2.24.2-1 [1039 kB]
-Get:12 http://mirror.ayous.org/debian/ unstable/main libcroco3 mipsel 0.6.2-1 [110 kB]
-Get:13 http://mirror.ayous.org/debian/ unstable/main libunistring0 mipsel 0.9.3-3 [411 kB]
-Get:14 http://mirror.ayous.org/debian/ unstable/main gettext mipsel 0.18.1.1-3 [2023 kB]
-Get:15 http://mirror.ayous.org/debian/ unstable/main intltool-debian all 0.35.0+20060710.1 [30.8 kB]
-Get:16 http://mirror.ayous.org/debian/ unstable/main po-debconf all 1.0.16+nmu1 [223 kB]
-Get:17 http://mirror.ayous.org/debian/ unstable/main debhelper all 8.1.0 [552 kB]
-Get:18 http://mirror.ayous.org/debian/ unstable/main zlib1g-dev mipsel 1:1.2.3.4.dfsg-3 [192 kB]
-debconf: delaying package configuration, since apt-utils is not installed
-Fetched 10.1 MB in 2s (4869 kB/s)
-Selecting previously deselected package bsdmainutils.
-(Reading database ... 10134 files and directories currently installed.)
-Unpacking bsdmainutils (from .../bsdmainutils_8.2.2_mipsel.deb) ...
-Selecting previously deselected package groff-base.
-Unpacking groff-base (from .../groff-base_1.20.1-10_mipsel.deb) ...
-Selecting previously deselected package man-db.
-Unpacking man-db (from .../man-db_2.5.7-8_mipsel.deb) ...
-Selecting previously deselected package libmagic1.
-Unpacking libmagic1 (from .../libmagic1_5.04-5_mipsel.deb) ...
-Selecting previously deselected package file.
-Unpacking file (from .../file_5.04-5_mipsel.deb) ...
-Selecting previously deselected package gettext-base.
-Unpacking gettext-base (from .../gettext-base_0.18.1.1-3_mipsel.deb) ...
-Selecting previously deselected package libpcre3.
-Unpacking libpcre3 (from .../libpcre3_8.02-1.1_mipsel.deb) ...
-Selecting previously deselected package libxml2.
-Unpacking libxml2 (from .../libxml2_2.7.8.dfsg-2_mipsel.deb) ...
-Selecting previously deselected package html2text.
-Unpacking html2text (from .../html2text_1.3.2a-15_mipsel.deb) ...
-Selecting previously deselected package libglib2.0-0.
-Unpacking libglib2.0-0 (from .../libglib2.0-0_2.24.2-1_mipsel.deb) ...
-Selecting previously deselected package libcroco3.
-Unpacking libcroco3 (from .../libcroco3_0.6.2-1_mipsel.deb) ...
-Selecting previously deselected package libunistring0.
-Unpacking libunistring0 (from .../libunistring0_0.9.3-3_mipsel.deb) ...
-Selecting previously deselected package gettext.
-Unpacking gettext (from .../gettext_0.18.1.1-3_mipsel.deb) ...
-Selecting previously deselected package intltool-debian.
-Unpacking intltool-debian (from .../intltool-debian_0.35.0+20060710.1_all.deb) ...
-Selecting previously deselected package po-debconf.
-Unpacking po-debconf (from .../po-debconf_1.0.16+nmu1_all.deb) ...
-Selecting previously deselected package debhelper.
-Unpacking debhelper (from .../debhelper_8.1.0_all.deb) ...
-Selecting previously deselected package cdbs.
-Unpacking cdbs (from .../archives/cdbs_0.4.92_all.deb) ...
-Selecting previously deselected package zlib1g-dev.
-Unpacking zlib1g-dev (from .../zlib1g-dev_1%3a1.2.3.4.dfsg-3_mipsel.deb) ...
-Setting up bsdmainutils (8.2.2) ...
-update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode.
-update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode.
-Setting up groff-base (1.20.1-10) ...
-Setting up man-db (2.5.7-8) ...
-Building database of manual pages ...
-Setting up libmagic1 (5.04-5) ...
-Setting up file (5.04-5) ...
-Setting up gettext-base (0.18.1.1-3) ...
-Setting up libpcre3 (8.02-1.1) ...
-Setting up libxml2 (2.7.8.dfsg-2) ...
-Setting up html2text (1.3.2a-15) ...
-Setting up libglib2.0-0 (2.24.2-1) ...
-Setting up libcroco3 (0.6.2-1) ...
-Setting up libunistring0 (0.9.3-3) ...
-Setting up gettext (0.18.1.1-3) ...
-Setting up intltool-debian (0.35.0+20060710.1) ...
-Setting up po-debconf (1.0.16+nmu1) ...
-Setting up debhelper (8.1.0) ...
-Setting up cdbs (0.4.92) ...
-Setting up zlib1g-dev (1:1.2.3.4.dfsg-3) ...
+Installing positive dependencies:
Removing negative dependencies:
Checking correctness of source dependencies...
-Kernel: Linux 2.6.33-rc7 mipsel (mips64)
-Toolchain package versions: libc6-dev_2.11.2-6 dpkg-dev_1.15.8.5 linux-libc-dev_2.6.32-23 gcc-4.4_4.4.5-2 g++-4.4_4.4.5-2 binutils_2.20.1-15 libstdc++6-4.4-dev_4.4.5-2 libstdc++6_4.4.5-2
-Package versions: apt_0.8.6 base-files_5.9 base-passwd_3.5.22 bash_4.1-3 binutils_2.20.1-15 bsdmainutils_8.2.2 bsdutils_1:2.17.2-3.3 build-essential_11.5 bzip2_1.0.5-6 cdbs_0.4.92 coreutils_8.5-1 cpp_4:4.4.5-1 cpp-4.4_4.4.5-2 dash_0.5.5.1-7 debconf_1.5.36 debconf-i18n_1.5.36 debfoster_2.7-1.1 debhelper_8.1.0 debian-archive-keyring_2010.08.28 debianutils_3.4.1 diffutils_1:3.0-1 dpkg_1.15.8.5 dpkg-dev_1.15.8.5 e2fslibs_1.41.12-2 e2fsprogs_1.41.12-2 fakeroot_1.14.4-1 file_5.04-5 findutils_4.4.2-1 g++_4:4.4.5-1 g++-4.4_4.4.5-2 gcc_4:4.4.5-1 gcc-4.4_4.4.5-2 gcc-4.4-base_4.4.5-2 gettext_0.18.1.1-3 gettext-base_0.18.1.1-3 gnupg_1.4.10-4 gpgv_1.4.10-4 grep_2.6.3-3 groff-base_1.20.1-10 gzip_1.3.12-9 hostname_3.04 html2text_1.3.2a-15 initscripts_2.88dsf-12 insserv_1.14.0-2 intltool-debian_0.35.0+20060710.1 libacl1_2.2.49-4 libattr1_1:2.4.44-2 libblkid1_2.17.2-3.3 libbz2-1.0_1.0.5-6 libc-bin_2.11.2-6 libc-dev-bin_2.11.2-6 libc6_2.11.2-6 libc6-dev_2.11.2-6 libcomerr2_1.41.12-2 libcroco3_0.6.2-1 libdb4.7_4.7.25-9 libdb4.8_4.8.30-2 libdpkg-perl_1.15.8.5 libgc1c2_1:6.8-1.2 libgcc1_1:4.4.5-2 libgdbm3_1.8.3-9 libglib2.0-0_2.24.2-1 libgmp3c2_2:4.3.2+dfsg-1 libgomp1_4.4.5-2 liblocale-gettext-perl_1.05-6 liblzma2_4.999.9beta+20100810-1 libmagic1_5.04-5 libmpfr1ldbl_2.4.2-3 libmpfr4_3.0.0-2 libncurses5_5.7+20100313-4 libpam-modules_1.1.1-6 libpam-runtime_1.1.1-6 libpam0g_1.1.1-6 libpcre3_8.02-1.1 libreadline6_6.1-3 libselinux1_2.0.96-1 libsepol1_2.0.41-1 libslang2_2.2.2-4 libss2_1.41.12-2 libstdc++6_4.4.5-2 libstdc++6-4.4-dev_4.4.5-2 libtext-charwidth-perl_0.04-6 libtext-iconv-perl_1.7-2 libtext-wrapi18n-perl_0.06-7 libtimedate-perl_1.2000-1 libunistring0_0.9.3-3 libusb-0.1-4_2:0.1.12-16 libuuid1_2.17.2-3.3 libxml2_2.7.8.dfsg-2 linux-libc-dev_2.6.32-23 login_1:4.1.4.2+svn3283-2 lsb-base_3.2-26 make_3.81-8 man-db_2.5.7-8 mawk_1.3.3-15 mount_2.17.2-3.3 ncurses-base_5.7+20100313-4 ncurses-bin_5.7+20100313-4 passwd_1:4.1.4.2+svn3283-2 patch_2.6-3 perl_5.10.1-15 perl-base_5.10.1-15 perl-modules_5.10.1-15 po-debconf_1.0.16+nmu1 readline-common_6.1-3 sed_4.2.1-7 sensible-utils_0.0.4 sudo_1.7.4p4-4 sysv-rc_2.88dsf-12 sysvinit_2.88dsf-12 sysvinit-utils_2.88dsf-12 tar_1.23-3 tzdata_2010m-1 util-linux_2.17.2-3.3 xz-utils_4.999.9beta+20100810-1 zlib1g_1:1.2.3.4.dfsg-3 zlib1g-dev_1:1.2.3.4.dfsg-3
+Kernel: Linux 2.6.32-5-sb1-bcm91250a mipsel (mips64)
+Toolchain package versions: libc6-dev_2.11.2-11 dpkg-dev_1.15.8.10 linux-libc-dev_2.6.37-2 gcc-4.4_4.4.5-13 g++-4.4_4.4.5-13 binutils_2.21.0.20110302-1 libstdc++6-4.4-dev_4.4.5-13 libstdc++6_4.5.2-4
+Package versions: apt_0.8.12 base-files_6.1 base-passwd_3.5.22 bash_4.1-3 binutils_2.21.0.20110302-1 bsdmainutils_8.2.2 bsdutils_1:2.17.2-9.1 build-essential_11.5 bzip2_1.0.5-6 coreutils_8.5-1 cpio_2.11-7 cpp_4:4.4.5-4 cpp-4.4_4.4.5-13 dash_0.5.5.1-7.4 debconf_1.5.38 debconf-i18n_1.5.38 debhelper_8.1.2 debian-archive-keyring_2010.08.28 debianutils_3.4.4 diffutils_1:3.0-1 dmsetup_2:1.02.63-2 dpkg_1.15.8.10 dpkg-dev_1.15.8.10 e2fslibs_1.41.12-2 e2fsprogs_1.41.12-2 fakeroot_1.14.5-2 file_5.04-5 findutils_4.4.2-1+b1 g++_4:4.4.5-4 g++-4.4_4.4.5-13 gcc_4:4.4.5-4 gcc-4.3-base_4.3.5-4 gcc-4.4_4.4.5-13 gcc-4.4-base_4.4.5-13 gcc-4.5-base_4.5.2-4 gettext_0.18.1.1-3 gettext-base_0.18.1.1-3 gnupg_1.4.11-3 gpgv_1.4.11-3 grep_2.6.3-3 groff-base_1.21-4 gzip_1.3.12-9 hostname_3.06 html2text_1.3.2a-15 initscripts_2.88dsf-13.1 insserv_1.14.0-2 intltool-debian_0.35.0+20060710.1 libacl1_2.2.49-4 libattr1_1:2.4.44-2 libblkid1_2.17.2-9.1 libbz2-1.0_1.0.5-6 libc-bin_2.11.2-11 libc-dev-bin_2.11.2-11 libc6_2.11.2-11 libc6-dev_2.11.2-11 libcomerr2_1.41.12-2 libcroco3_0.6.2-1 libdb4.7_4.7.25-12 libdb4.8_4.8.30-5 libdevmapper1.02.1_2:1.02.63-2 libdpkg-perl_1.15.8.10 libgcc1_1:4.5.2-4 libgdbm3_1.8.3-9 libglib2.0-0_2.28.1-1+b1 libgmp10_2:5.0.1+dfsg-6 libgmp3c2_2:4.3.2+dfsg-1 libgomp1_4.5.2-4 liblocale-gettext-perl_1.05-6 liblzma1_4.999.9beta+20091116-1 liblzma2_5.0.0-2 libmagic1_5.04-5 libmpfr1ldbl_2.4.2-3 libmpfr4_3.0.0-9 libncurses5_5.8+20110307-1 libncursesw5_5.8+20110307-1 libpam-modules_1.1.2-2 libpam-runtime_1.1.2-2 libpam0g_1.1.2-2 libpcre3_8.12-3 libpipeline1_1.1.0-1 libpopt0_1.16-1 libreadline6_6.1-3 libselinux1_2.0.96-1 libsepol1_2.0.42-1 libslang2_2.2.2-4 libss2_1.41.12-2 libstdc++6_4.5.2-4 libstdc++6-4.4-dev_4.4.5-13 libtext-charwidth-perl_0.04-6 libtext-iconv-perl_1.7-2 libtext-wrapi18n-perl_0.06-7 libtimedate-perl_1.2000-1 libudev0_166-1 libunistring0_0.9.3-3 libusb-0.1-4_2:0.1.12-17 libuuid1_2.17.2-9.1 libxml2_2.7.8.dfsg-2 linux-libc-dev_2.6.37-2 login_1:4.1.4.2+svn3283-3 lsb-base_3.2-27 lzma_4.43-14 make_3.81-8 man-db_2.5.9-4 mawk_1.3.3-15 mount_2.17.2-9.1 ncurses-base_5.8+20110307-1 ncurses-bin_5.8+20110307-1 passwd_1:4.1.4.2+svn3283-3 patch_2.6.1-1 perl_5.10.1-17 perl-base_5.10.1-17 perl-modules_5.10.1-17 pkg-config_0.25-1.1 po-debconf_1.0.16+nmu1 procps_1:3.2.8-10 readline-common_6.1-3 sed_4.2.1-9 sensible-utils_0.0.6 sysv-rc_2.88dsf-13.1 sysvinit_2.88dsf-13.1 sysvinit-utils_2.88dsf-13.1 tar_1.25-3 tzdata_2011c-1 udev_166-1 util-linux_2.17.2-9.1 xz-utils_5.0.0-2 zlib1g_1:1.2.3.4.dfsg-3 zlib1g-dev_1:1.2.3.4.dfsg-3
┌──────────────────────────────────────────────────────────────────────────────┐
│ Build │
@@ -664,12 +558,12 @@ Unpack source
dpkg-source: warning: -sn is not a valid option for Dpkg::Source::Package::V3::quilt
gpgv: keyblock resource `/home/buildd/.gnupg/trustedkeys.gpg': file open error
-gpgv: Signature made Tue Feb 8 07:20:43 2011 UTC using RSA key ID 2295D502
+gpgv: Signature made Fri Mar 11 21:59:41 2011 UTC using DSA key ID C09FD35A
gpgv: Can't check signature: public key not found
-dpkg-source: warning: failed to verify signature on ./bwa_0.5.9-1.dsc
+dpkg-source: warning: failed to verify signature on ./bwa_0.5.9-2.dsc
dpkg-source: info: extracting bwa in bwa-0.5.9
dpkg-source: info: unpacking bwa_0.5.9.orig.tar.bz2
-dpkg-source: info: unpacking bwa_0.5.9-1.debian.tar.gz
+dpkg-source: info: unpacking bwa_0.5.9-2.debian.tar.gz
Check disc space
────────────────
@@ -684,155 +578,155 @@ dpkg-buildpackage: export CXXFLAGS from dpkg-buildflags (origin: vendor): -g -O2
dpkg-buildpackage: export FFLAGS from dpkg-buildflags (origin: vendor): -g -O2
dpkg-buildpackage: export LDFLAGS from dpkg-buildflags (origin: vendor):
dpkg-buildpackage: source package bwa
-dpkg-buildpackage: source version 0.5.9-1
+dpkg-buildpackage: source version 0.5.9-2
dpkg-source --before-build bwa-0.5.9
dpkg-buildpackage: host architecture mipsel
/usr/bin/fakeroot debian/rules clean
-test -x debian/rules
-dh_testroot
-rm -f debian/stamp-makefile-build debian/stamp-makefile-install
-/usr/bin/make -C . CFLAGS="-g -O2 -g -O2" CXXFLAGS="-g -O2 -g -O2" CPPFLAGS="" LDFLAGS="" -k clean
-make[1]: Entering directory `/build/buildd-bwa_0.5.9-1-mipsel-9vjpUu/bwa-0.5.9'
-make[2]: Entering directory `/build/buildd-bwa_0.5.9-1-mipsel-9vjpUu/bwa-0.5.9'
+dh clean
+ dh_testdir
+ dh_auto_clean
+make[1]: Entering directory `/build/buildd-bwa_0.5.9-2-mipsel-OgcXgn/bwa-0.5.9'
+make[2]: Entering directory `/build/buildd-bwa_0.5.9-2-mipsel-OgcXgn/bwa-0.5.9'
rm -f gmon.out *.o a.out bwa *~ *.a
-make[2]: Leaving directory `/build/buildd-bwa_0.5.9-1-mipsel-9vjpUu/bwa-0.5.9'
-make[2]: Entering directory `/build/buildd-bwa_0.5.9-1-mipsel-9vjpUu/bwa-0.5.9/bwt_gen'
+make[2]: Leaving directory `/build/buildd-bwa_0.5.9-2-mipsel-OgcXgn/bwa-0.5.9'
+make[2]: Entering directory `/build/buildd-bwa_0.5.9-2-mipsel-OgcXgn/bwa-0.5.9/bwt_gen'
rm -f gmon.out *.o a.out *~ *.a
-make[2]: Leaving directory `/build/buildd-bwa_0.5.9-1-mipsel-9vjpUu/bwa-0.5.9/bwt_gen'
-make[1]: Leaving directory `/build/buildd-bwa_0.5.9-1-mipsel-9vjpUu/bwa-0.5.9'
-dh_clean
+make[2]: Leaving directory `/build/buildd-bwa_0.5.9-2-mipsel-OgcXgn/bwa-0.5.9/bwt_gen'
+make[1]: Leaving directory `/build/buildd-bwa_0.5.9-2-mipsel-OgcXgn/bwa-0.5.9'
+ dh_clean
debian/rules build
-test -x debian/rules
-mkdir -p "."
-/usr/bin/make -C . CFLAGS="-g -O2 -g -O2" CXXFLAGS="-g -O2 -g -O2" CPPFLAGS="" LDFLAGS=""
-make[1]: Entering directory `/build/buildd-bwa_0.5.9-1-mipsel-9vjpUu/bwa-0.5.9'
-make[2]: Entering directory `/build/buildd-bwa_0.5.9-1-mipsel-9vjpUu/bwa-0.5.9'
+dh build
+ dh_testdir
+ dh_auto_configure
+ dh_auto_build
+make[1]: Entering directory `/build/buildd-bwa_0.5.9-2-mipsel-OgcXgn/bwa-0.5.9'
+make[2]: Entering directory `/build/buildd-bwa_0.5.9-2-mipsel-OgcXgn/bwa-0.5.9'
make[2]: Nothing to be done for `lib'.
-make[2]: Leaving directory `/build/buildd-bwa_0.5.9-1-mipsel-9vjpUu/bwa-0.5.9'
-make[2]: Entering directory `/build/buildd-bwa_0.5.9-1-mipsel-9vjpUu/bwa-0.5.9/bwt_gen'
-gcc -c -g -O2 -g -O2 -DHAVE_PTHREAD bwt_gen.c -o bwt_gen.o
-gcc -c -g -O2 -g -O2 -DHAVE_PTHREAD QSufSort.c -o QSufSort.o
+make[2]: Leaving directory `/build/buildd-bwa_0.5.9-2-mipsel-OgcXgn/bwa-0.5.9'
+make[2]: Entering directory `/build/buildd-bwa_0.5.9-2-mipsel-OgcXgn/bwa-0.5.9/bwt_gen'
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD bwt_gen.c -o bwt_gen.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD QSufSort.c -o QSufSort.o
ar -cru libbwtgen.a bwt_gen.o QSufSort.o
-make[2]: Leaving directory `/build/buildd-bwa_0.5.9-1-mipsel-9vjpUu/bwa-0.5.9/bwt_gen'
-gcc -c -g -O2 -g -O2 -DHAVE_PTHREAD utils.c -o utils.o
-gcc -c -g -O2 -g -O2 -DHAVE_PTHREAD bwt.c -o bwt.o
-gcc -c -g -O2 -g -O2 -DHAVE_PTHREAD bwtio.c -o bwtio.o
-gcc -c -g -O2 -g -O2 -DHAVE_PTHREAD bwtaln.c -o bwtaln.o
-gcc -c -g -O2 -g -O2 -DHAVE_PTHREAD bwtgap.c -o bwtgap.o
-gcc -c -g -O2 -g -O2 -DHAVE_PTHREAD is.c -o is.o
-gcc -c -g -O2 -g -O2 -DHAVE_PTHREAD bntseq.c -o bntseq.o
-gcc -c -g -O2 -g -O2 -DHAVE_PTHREAD bwtmisc.c -o bwtmisc.o
-gcc -c -g -O2 -g -O2 -DHAVE_PTHREAD bwtindex.c -o bwtindex.o
-gcc -c -g -O2 -g -O2 -DHAVE_PTHREAD stdaln.c -o stdaln.o
-gcc -c -g -O2 -g -O2 -DHAVE_PTHREAD simple_dp.c -o simple_dp.o
-gcc -c -g -O2 -g -O2 -DHAVE_PTHREAD bwaseqio.c -o bwaseqio.o
-gcc -c -g -O2 -g -O2 -DHAVE_PTHREAD bwase.c -o bwase.o
-gcc -c -g -O2 -g -O2 -DHAVE_PTHREAD bwape.c -o bwape.o
-gcc -c -g -O2 -g -O2 -DHAVE_PTHREAD kstring.c -o kstring.o
-gcc -c -g -O2 -g -O2 -DHAVE_PTHREAD cs2nt.c -o cs2nt.o
-gcc -c -g -O2 -g -O2 -DHAVE_PTHREAD bwtsw2_core.c -o bwtsw2_core.o
-gcc -c -g -O2 -g -O2 -DHAVE_PTHREAD bwtsw2_main.c -o bwtsw2_main.o
-gcc -c -g -O2 -g -O2 -DHAVE_PTHREAD bwtsw2_aux.c -o bwtsw2_aux.o
-gcc -c -g -O2 -g -O2 -DHAVE_PTHREAD bwt_lite.c -o bwt_lite.o
-gcc -c -g -O2 -g -O2 -DHAVE_PTHREAD bwtsw2_chain.c -o bwtsw2_chain.o
-gcc -c -g -O2 -g -O2 -DHAVE_PTHREAD bamlite.c -o bamlite.o
-gcc -c -g -O2 -g -O2 -DHAVE_PTHREAD main.c -o main.o
-gcc -g -O2 -g -O2 -DHAVE_PTHREAD utils.o bwt.o bwtio.o bwtaln.o bwtgap.o is.o bntseq.o bwtmisc.o bwtindex.o stdaln.o simple_dp.o bwaseqio.o bwase.o bwape.o kstring.o cs2nt.o bwtsw2_core.o bwtsw2_main.o bwtsw2_aux.o bwt_lite.o bwtsw2_chain.o bamlite.o main.o -o bwa -lm -lz -lpthread -Lbwt_gen -lbwtgen
-make[1]: Leaving directory `/build/buildd-bwa_0.5.9-1-mipsel-9vjpUu/bwa-0.5.9'
-touch debian/stamp-makefile-build
-DEB_MAKE_CHECK_TARGET unset, not running checks
+make[2]: Leaving directory `/build/buildd-bwa_0.5.9-2-mipsel-OgcXgn/bwa-0.5.9/bwt_gen'
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD utils.c -o utils.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD bwt.c -o bwt.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD bwtio.c -o bwtio.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD bwtaln.c -o bwtaln.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD bwtgap.c -o bwtgap.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD is.c -o is.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD bntseq.c -o bntseq.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD bwtmisc.c -o bwtmisc.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD bwtindex.c -o bwtindex.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD stdaln.c -o stdaln.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD simple_dp.c -o simple_dp.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD bwaseqio.c -o bwaseqio.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD bwase.c -o bwase.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD bwape.c -o bwape.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD kstring.c -o kstring.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD cs2nt.c -o cs2nt.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD bwtsw2_core.c -o bwtsw2_core.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD bwtsw2_main.c -o bwtsw2_main.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD bwtsw2_aux.c -o bwtsw2_aux.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD bwt_lite.c -o bwt_lite.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD bwtsw2_chain.c -o bwtsw2_chain.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD bamlite.c -o bamlite.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD main.c -o main.o
+gcc -g -Wall -O2 -DHAVE_PTHREAD utils.o bwt.o bwtio.o bwtaln.o bwtgap.o is.o bntseq.o bwtmisc.o bwtindex.o stdaln.o simple_dp.o bwaseqio.o bwase.o bwape.o kstring.o cs2nt.o bwtsw2_core.o bwtsw2_main.o bwtsw2_aux.o bwt_lite.o bwtsw2_chain.o bamlite.o main.o -o bwa -lm -lz -lpthread -Lbwt_gen -lbwtgen
+make[1]: Leaving directory `/build/buildd-bwa_0.5.9-2-mipsel-OgcXgn/bwa-0.5.9'
+ dh_auto_test
/usr/bin/fakeroot debian/rules binary-arch
-test -x debian/rules
-dh_testroot
-dh_prep
-dh_installdirs -A
-mkdir -p "."
-DEB_MAKE_CHECK_TARGET unset, not running checks
-DEB_MAKE_INSTALL_TARGET unset, skipping default makefile.mk common-install target
-Adding cdbs dependencies to debian/bwa.substvars
-dh_installdirs -pbwa
-dh_installdocs -pbwa ./README ./NEWS
-dh_installexamples -pbwa
-dh_installman -pbwa
-dh_installinfo -pbwa
-dh_installmenu -pbwa
-dh_installcron -pbwa
-dh_installinit -pbwa
-dh_installdebconf -pbwa
-dh_installemacsen -pbwa
-dh_installcatalogs -pbwa
-dh_installpam -pbwa
-dh_installlogrotate -pbwa
-dh_installlogcheck -pbwa
-dh_installchangelogs -pbwa ./ChangeLog
-dh_installudev -pbwa
-dh_lintian -pbwa
-dh_bugfiles -pbwa
-dh_install -pbwa
-dh_link -pbwa
-dh_installmime -pbwa
-dh_strip -pbwa
-dh_compress -pbwa
-dh_fixperms -pbwa
-dh_makeshlibs -pbwa
-dh_installdeb -pbwa
-dh_perl -pbwa
-dh_shlibdeps -pbwa
-dh_gencontrol -pbwa
+dh binary-arch
+ dh_testroot -a
+ dh_prep -a
+ dh_installdirs -a
+ dh_auto_install -a
+ dh_install -a
+ dh_installdocs -a
+ dh_installchangelogs -a
+ dh_installexamples -a
+ dh_installman -a
+ dh_installcatalogs -a
+ dh_installcron -a
+ dh_installdebconf -a
+ dh_installemacsen -a
+ dh_installifupdown -a
+ dh_installinfo -a
+ dh_installinit -a
+ dh_installmenu -a
+ dh_installmime -a
+ dh_installmodules -a
+ dh_installlogcheck -a
+ dh_installlogrotate -a
+ dh_installpam -a
+ dh_installppp -a
+ dh_installudev -a
+ dh_installwm -a
+ dh_installxfonts -a
+ dh_bugfiles -a
+ dh_lintian -a
+ dh_gconf -a
+ dh_icons -a
+ dh_perl -a
+ dh_usrlocal -a
+ dh_link -a
+ dh_compress -a
+ dh_fixperms -a
+ dh_strip -a
+ dh_makeshlibs -a
+ dh_shlibdeps -a
+ dh_installdeb -a
+ dh_gencontrol -a
dpkg-gencontrol: warning: package bwa: unused substitution variable ${perl:Depends}
-dh_md5sums -pbwa
-dh_builddeb -pbwa
-dpkg-deb: building package `bwa' in `../bwa_0.5.9-1_mipsel.deb'.
- dpkg-genchanges -B -mmipsel Build Daemon (monteverdi) <buildd_mipsel-monteverdi at buildd.debian.org> >../bwa_0.5.9-1_mipsel.changes
+ dh_md5sums -a
+ dh_builddeb -a
+dpkg-deb: building package `bwa' in `../bwa_0.5.9-2_mipsel.deb'.
+ dpkg-genchanges -B -mmipsel Build Daemon (mayer) <buildd_mips-mayer at buildd.debian.org> >../bwa_0.5.9-2_mipsel.changes
dpkg-genchanges: arch-specific upload - not including arch-independent packages
dpkg-genchanges: binary-only upload - not including any source code
dpkg-source --after-build bwa-0.5.9
dpkg-buildpackage: binary only upload (no source included)
────────────────────────────────────────────────────────────────────────────────
-Build finished at 20110208-1318
+Build finished at 20110312-0810
-bwa_0.5.9-1_mipsel.changes:
+bwa_0.5.9-2_mipsel.changes:
Format: 1.8
-Date: Tue, 08 Feb 2011 16:11:12 +0900
+Date: Fri, 11 Mar 2011 22:49:07 +0100
Source: bwa
Binary: bwa
Architecture: mipsel
-Version: 0.5.9-1
+Version: 0.5.9-2
Distribution: sid
Urgency: low
-Maintainer: mipsel Build Daemon (monteverdi) <buildd_mipsel-monteverdi at buildd.debian.org>
-Changed-By: Charles Plessy <plessy at debian.org>
+Maintainer: mipsel Build Daemon (mayer) <buildd_mips-mayer at buildd.debian.org>
+Changed-By: Andreas Tille <tille at debian.org>
Description:
bwa - Burrows-Wheeler Aligner
Changes:
- bwa (0.5.9-1) unstable; urgency=low
+ bwa (0.5.9-2) unstable; urgency=low
.
- * New usptream release
- - Upstream moved to GitHub (debian/upstream-metadata.yaml).
- - Checked copyright; one file was removed (debian/copyright).
- * Migrated the Debian source package to Git (debian/control).
- * Use Debhelper 8 (debian/control, debian/compat).
+ * Watchfile should not regard rc releases.
+ * Drop cdbs in favour of dh
Checksums-Sha1:
- 83efb08fe3f4c356780afb66bb8aca68f78600d5 157276 bwa_0.5.9-1_mipsel.deb
+ 9d2436a366d1b0917a710177f92dcd94653062d0 157254 bwa_0.5.9-2_mipsel.deb
Checksums-Sha256:
- c7669f6291a12ab71bc129dc270a68628eda67602a4128e517f13d3b22984036 157276 bwa_0.5.9-1_mipsel.deb
+ 29afbb425133000aee5e8386937d3cd60a3a32b2598f1f05947ae8304c2c9d5c 157254 bwa_0.5.9-2_mipsel.deb
Files:
- 4fe2161fb763a828f545819c8c39e7fa 157276 science optional bwa_0.5.9-1_mipsel.deb
+ ba069260a458dd8bfd3ccbe0d8cab0bc 157254 science optional bwa_0.5.9-2_mipsel.deb
┌──────────────────────────────────────────────────────────────────────────────┐
│ Package contents │
└──────────────────────────────────────────────────────────────────────────────┘
-bwa_0.5.9-1_mipsel.deb
+bwa_0.5.9-2_mipsel.deb
──────────────────────
new debian package, version 2.0.
- size 157276 bytes: control archive= 977 bytes.
+ size 157254 bytes: control archive= 974 bytes.
775 bytes, 17 lines control
615 bytes, 10 lines md5sums
Package: bwa
- Version: 0.5.9-1
+ Version: 0.5.9-2
Architecture: mipsel
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
Installed-Size: 372
@@ -849,25 +743,25 @@ bwa_0.5.9-1_mipsel.deb
to around 100 kbp. Both algorithms do gapped alignment. They are usually more
accurate and faster on queries with low error rates.
-drwxr-xr-x root/root 0 2011-02-08 13:18 ./
-drwxr-xr-x root/root 0 2011-02-08 13:18 ./usr/
-drwxr-xr-x root/root 0 2011-02-08 13:18 ./usr/share/
-drwxr-xr-x root/root 0 2011-02-08 13:18 ./usr/share/doc/
-drwxr-xr-x root/root 0 2011-02-08 13:18 ./usr/share/doc/bwa/
--rw-r--r-- root/root 17912 2011-01-25 00:00 ./usr/share/doc/bwa/changelog.gz
--rw-r--r-- root/root 17912 2011-01-25 00:00 ./usr/share/doc/bwa/ChangeLog.gz
--rw-r--r-- root/root 634 2011-01-25 00:00 ./usr/share/doc/bwa/README
--rw-r--r-- root/root 881 2011-02-08 07:11 ./usr/share/doc/bwa/changelog.Debian.gz
--rw-r--r-- root/root 5857 2011-01-25 00:00 ./usr/share/doc/bwa/NEWS.gz
--rw-r--r-- root/root 2676 2011-02-08 07:09 ./usr/share/doc/bwa/copyright
-drwxr-xr-x root/root 0 2011-02-08 13:18 ./usr/share/bwa/
+drwxr-xr-x root/root 0 2011-03-12 08:09 ./
+drwxr-xr-x root/root 0 2011-03-12 08:09 ./usr/
+drwxr-xr-x root/root 0 2011-03-12 08:10 ./usr/bin/
+-rwxr-xr-x root/root 254656 2011-03-12 08:10 ./usr/bin/bwa
+drwxr-xr-x root/root 0 2011-03-12 08:09 ./usr/share/
+drwxr-xr-x root/root 0 2011-03-12 08:09 ./usr/share/bwa/
-rwxr-xr-x root/root 3176 2011-01-25 00:00 ./usr/share/bwa/solid2fastq.pl
-rwxr-xr-x root/root 616 2011-01-25 00:00 ./usr/share/bwa/qualfa2fq.pl
-drwxr-xr-x root/root 0 2011-02-08 13:18 ./usr/share/man/
-drwxr-xr-x root/root 0 2011-02-08 13:18 ./usr/share/man/man1/
--rw-r--r-- root/root 7554 2011-02-08 13:18 ./usr/share/man/man1/bwa.1.gz
-drwxr-xr-x root/root 0 2011-02-08 13:18 ./usr/bin/
--rwxr-xr-x root/root 254656 2011-02-08 13:18 ./usr/bin/bwa
+drwxr-xr-x root/root 0 2011-03-12 08:09 ./usr/share/doc/
+drwxr-xr-x root/root 0 2011-03-12 08:09 ./usr/share/doc/bwa/
+-rw-r--r-- root/root 5857 2011-01-25 00:00 ./usr/share/doc/bwa/NEWS.gz
+-rw-r--r-- root/root 634 2011-01-25 00:00 ./usr/share/doc/bwa/README
+-rw-r--r-- root/root 2676 2011-02-08 07:09 ./usr/share/doc/bwa/copyright
+-rw-r--r-- root/root 17912 2011-01-25 00:00 ./usr/share/doc/bwa/changelog.gz
+-rw-r--r-- root/root 17912 2011-01-25 00:00 ./usr/share/doc/bwa/ChangeLog.gz
+-rw-r--r-- root/root 957 2011-03-11 21:54 ./usr/share/doc/bwa/changelog.Debian.gz
+drwxr-xr-x root/root 0 2011-03-12 08:09 ./usr/share/man/
+drwxr-xr-x root/root 0 2011-03-12 08:09 ./usr/share/man/man1/
+-rw-r--r-- root/root 7554 2011-03-12 08:09 ./usr/share/man/man1/bwa.1.gz
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -876,9 +770,8 @@ drwxr-xr-x root/root 0 2011-02-08 13:18 ./usr/bin/
Built successfully
────────────────────────────────────────────────────────────────────────────────
-Purging /var/lib/schroot/mount/sid-mipsel-sbuild-8a96403e-aef9-4007-9c02-1fefc0fbb7d8/build/buildd-bwa_0.5.9-1-mipsel-9vjpUu
-Not removing build depends: cloned chroot in use
+Purging /var/lib/schroot/mount/sid-mipsel-sbuild-9a01b7d6-45b0-4c77-98ec-f57807330914/build/buildd-bwa_0.5.9-2-mipsel-OgcXgn
────────────────────────────────────────────────────────────────────────────────
-Finished at 20110208-1318
-Build needed 00:04:43, 2712k disc space
+Finished at 20110312-0810
+Build needed 00:02:09, 2712k disc space
diff --git a/mipsel.log b/mipsel.log
index 6243e51..8e3f237 100644
--- a/mipsel.log
+++ b/mipsel.log
@@ -1,68 +1,65 @@
-From buildd at monteverdi.ayous.org Tue Feb 08 13:45:51 2011
-Return-path: <buildd at monteverdi.ayous.org>
-Received: from monteverdi.ayous.org ([2001:a60:f006:deb:20a:1ff:fe00:987])
- by grieg.debian.org with esmtp (Exim 4.69)
- (envelope-from <buildd at monteverdi.ayous.org>) id 1Pmnt7-0001hr-Vu
- for logs at buildd.debian.org; Tue, 08 Feb 2011 13:45:50 +0000
-Received: from buildd by monteverdi.ayous.org with local (Exim 4.69)
- (envelope-from <buildd at monteverdi.ayous.org>)
- id 1PmnT1-0005yZ-Ga; Tue, 08 Feb 2011 13:18:51 +0000
-From: buildd on monteverdi <buildd at monteverdi.ayous.org>
-To: aba+buildd_monteverdi at not.so.argh.org,logs at buildd.debian.org
-Subject: Log for successful build of bwa_0.5.9-1 on mipsel (dist=sid)
+From buildd at mayer.debian.org Sat Mar 12 08:10:20 2011
+Return-path: <buildd at mayer.debian.org>
+Received: from kokkonen.debian.org ([2001:41b8:202:deb:216:35ff:fec4:6340])
+ from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
+ CN=kokkonen.debian.org,
+ EMAIL=hostmaster at kokkonen.debian.org (verified)
+ by grieg.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
+ (Exim 4.69) (envelope-from <buildd at mayer.debian.org>)
+ id 1PyJu0-00063I-4F
+ for logs at buildd.debian.org; Sat, 12 Mar 2011 08:10:20 +0000
+Received: from mayer.debian.org ([140.211.166.78])
+ from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
+ CN=mayer.debian.org, EMAIL=hostmaster at mayer.debian.org (verified)
+ by kokkonen.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
+ (Exim 4.69) (envelope-from <buildd at mayer.debian.org>)
+ id 1PyJty-0005kU-9T
+ for logs at buildd.debian.org; Sat, 12 Mar 2011 08:10:18 +0000
+Received: from buildd by mayer.debian.org with local (Exim 4.69)
+ (envelope-from <buildd at mayer.debian.org>)
+ id 1PyJtv-0007El-0z; Sat, 12 Mar 2011 08:10:15 +0000
+From: buildd on mayer <buildd at mayer.debian.org>
+To: buildd-porters at mayer.debian.org,logs at buildd.debian.org
+Subject: Log for successful build of bwa_0.5.9-2 on mipsel (dist=sid)
Content-Type: text/plain; charset=UTF-8
Content-Transfer-Encoding: 8bit
-Message-Id: <E1PmnT1-0005yZ-Ga at monteverdi.ayous.org>
-Date: Tue, 08 Feb 2011 13:18:51 +0000
+Message-Id: <E1PyJtv-0007El-0z at mayer.debian.org>
+Date: Sat, 12 Mar 2011 08:10:15 +0000
Delivered-To: logs at buildd.debian.org
-sbuild (Debian sbuild) 0.60.0 (23 Feb 2010) on monteverdi.ayous.org
+sbuild (Debian sbuild) 0.60.5 (14 Nov 2010) on mayer.debian.org
╔══════════════════════════════════════════════════════════════════════════════╗
-║ bwa 0.5.9-1 (mipsel) 08 Feb 2011 13:14 ║
+║ bwa 0.5.9-2 (mipsel) 12 Mar 2011 08:08 ║
╚══════════════════════════════════════════════════════════════════════════════╝
Package: bwa
-Version: 0.5.9-1
+Version: 0.5.9-2
Architecture: mipsel
-Chroot Build Dir: /var/lib/schroot/mount/sid-mipsel-sbuild-8a96403e-aef9-4007-9c02-1fefc0fbb7d8/build/buildd-bwa_0.5.9-1-mipsel-9vjpUu
-Start Time: 20110208-1314
-Get:1 http://incoming.debian.org unstable Release.gpg [835 B]
-Ign http://incoming.debian.org/debian/ unstable/contrib Translation-en
-Ign http://incoming.debian.org/debian/ unstable/main Translation-en
-Get:2 http://incoming.debian.org Release.gpg [835 B]
-Ign http://incoming.debian.org/buildd-unstable/ Translation-en
-Get:3 http://mirror.ayous.org unstable Release.gpg [835 B]
-Get:4 http://incoming.debian.org unstable Release [104 kB]
-Ign http://mirror.ayous.org/debian/ unstable/contrib Translation-en
-Ign http://mirror.ayous.org/debian/ unstable/main Translation-en
-Get:5 http://mirror.ayous.org unstable Release [104 kB]
-Get:6 http://incoming.debian.org Release [1604 B]
-Ign http://incoming.debian.org unstable/main Sources
-Ign http://incoming.debian.org unstable/contrib Sources
-Ign http://incoming.debian.org unstable/non-free Sources
-Ign http://incoming.debian.org unstable/main mipsel Packages
-Ign http://incoming.debian.org unstable/contrib mipsel Packages
-Ign http://mirror.ayous.org unstable/main Sources
-Ign http://mirror.ayous.org unstable/contrib Sources
-Ign http://mirror.ayous.org unstable/non-free Sources
-Ign http://mirror.ayous.org unstable/main mipsel Packages
-Ign http://mirror.ayous.org unstable/contrib mipsel Packages
-Get:7 http://incoming.debian.org unstable/main Sources [5298 kB]
-Get:8 http://mirror.ayous.org unstable/main Sources [5298 kB]
-Get:9 http://mirror.ayous.org unstable/contrib Sources [46.1 kB]
-Get:10 http://incoming.debian.org unstable/contrib Sources [46.1 kB]
-Get:11 http://mirror.ayous.org unstable/non-free Sources [100 kB]
-Get:12 http://incoming.debian.org unstable/non-free Sources [100 kB]
-Get:13 http://mirror.ayous.org unstable/main mipsel Packages [8929 kB]
-Get:14 http://incoming.debian.org unstable/main mipsel Packages [8929 kB]
-Get:15 http://mirror.ayous.org unstable/contrib mipsel Packages [61.3 kB]
-Get:16 http://incoming.debian.org unstable/contrib mipsel Packages [61.3 kB]
-Ign http://incoming.debian.org Sources
-Ign http://incoming.debian.org Packages
-Get:17 http://incoming.debian.org Sources [60.0 kB]
-Get:18 http://incoming.debian.org Packages [1020 kB]
-Fetched 30.2 MB in 51s (588 kB/s)
+Chroot Build Dir: /var/lib/schroot/mount/sid-mipsel-sbuild-9a01b7d6-45b0-4c77-98ec-f57807330914/build/buildd-bwa_0.5.9-2-mipsel-OgcXgn
+Start Time: 20110312-0808
+Hit http://debian.oregonstate.edu sid InRelease
+Hit http://debian.oregonstate.edu sid/main Sources
+Hit http://debian.oregonstate.edu sid/contrib Sources
+Hit http://debian.oregonstate.edu sid/main mipsel Packages
+Hit http://debian.oregonstate.edu sid/contrib mipsel Packages
+Ign http://debian.oregonstate.edu sid/contrib TranslationIndex
+Hit http://debian.oregonstate.edu sid/main TranslationIndex
+Ign http://debian.oregonstate.edu sid/contrib Translation-en
+Hit http://incoming.debian.org sid InRelease
+Ign http://incoming.debian.org InRelease
+Hit http://incoming.debian.org Release.gpg
+Hit http://incoming.debian.org sid/main Sources
+Hit http://incoming.debian.org sid/contrib Sources
+Hit http://incoming.debian.org sid/main mipsel Packages
+Hit http://incoming.debian.org sid/contrib mipsel Packages
+Ign http://incoming.debian.org sid/contrib TranslationIndex
+Hit http://incoming.debian.org sid/main TranslationIndex
+Hit http://incoming.debian.org Release
+Hit http://incoming.debian.org Sources
+Hit http://incoming.debian.org Packages
+Ign http://incoming.debian.org sid/contrib Translation-en
+Ign http://incoming.debian.org Translation-en
Reading package lists...
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -84,132 +81,32 @@ Reading state information...
NOTICE: 'bwa' packaging is maintained in the 'Git' version control system at:
git://git.debian.org/git/debian-med/bwa.git
Need to get 119 kB of source archives.
-Get:1 http://incoming.debian.org/buildd-unstable/ bwa 0.5.9-1 (dsc) [1894 B]
-Get:2 http://incoming.debian.org/buildd-unstable/ bwa 0.5.9-1 (tar) [114 kB]
-Get:3 http://incoming.debian.org/buildd-unstable/ bwa 0.5.9-1 (diff) [3651 B]
-Fetched 119 kB in 2s (53.5 kB/s)
+Get:1 http://incoming.debian.org/buildd-unstable/ bwa 0.5.9-2 (dsc) [1245 B]
+Get:2 http://incoming.debian.org/buildd-unstable/ bwa 0.5.9-2 (tar) [114 kB]
+Get:3 http://incoming.debian.org/buildd-unstable/ bwa 0.5.9-2 (diff) [3828 B]
+Fetched 119 kB in 0s (204 kB/s)
Download complete and in download only mode
Check arch
──────────
** Using build dependencies supplied by package:
-Build-Depends: cdbs, debhelper (>= 8), zlib1g-dev
+Build-Depends: debhelper (>= 8), zlib1g-dev
┌──────────────────────────────────────────────────────────────────────────────┐
│ Install build dependencies (internal resolver) │
└──────────────────────────────────────────────────────────────────────────────┘
Checking for already installed source dependencies...
-cdbs: missing
-debhelper: missing
-Using default version 8.1.0
-zlib1g-dev: missing
+debhelper: already installed (8.1.2 >= 8 is satisfied)
+zlib1g-dev: already installed (1:1.2.3.4.dfsg-3)
Checking for source dependency conflicts...
-Installing positive dependencies: cdbs debhelper zlib1g-dev
-Reading package lists...
-Building dependency tree...
-Reading state information...
-The following extra packages will be installed:
- bsdmainutils file gettext gettext-base groff-base html2text intltool-debian
- libcroco3 libglib2.0-0 libmagic1 libpcre3 libunistring0 libxml2 man-db
- po-debconf
-Suggested packages:
- wamerican wordlist whois vacation devscripts doc-base dh-make gettext-doc
- groff less www-browser libmail-box-perl
-Recommended packages:
- autotools-dev curl wget lynx-cur autopoint libglib2.0-data shared-mime-info
- xml-core libmail-sendmail-perl
-The following NEW packages will be installed:
- bsdmainutils cdbs debhelper file gettext gettext-base groff-base html2text
- intltool-debian libcroco3 libglib2.0-0 libmagic1 libpcre3 libunistring0
- libxml2 man-db po-debconf zlib1g-dev
-0 upgraded, 18 newly installed, 0 to remove and 60 not upgraded.
-Need to get 10.1 MB of archives.
-After this operation, 30.5 MB of additional disk space will be used.
-Get:1 http://incoming.debian.org/buildd-unstable/ cdbs 0.4.92 [1268 kB]
-Get:2 http://mirror.ayous.org/debian/ unstable/main bsdmainutils mipsel 8.2.2 [207 kB]
-Get:3 http://mirror.ayous.org/debian/ unstable/main groff-base mipsel 1.20.1-10 [1188 kB]
-Get:4 http://mirror.ayous.org/debian/ unstable/main man-db mipsel 2.5.7-8 [1248 kB]
-Get:5 http://mirror.ayous.org/debian/ unstable/main libmagic1 mipsel 5.04-5 [238 kB]
-Get:6 http://mirror.ayous.org/debian/ unstable/main file mipsel 5.04-5 [49.5 kB]
-Get:7 http://mirror.ayous.org/debian/ unstable/main gettext-base mipsel 0.18.1.1-3 [152 kB]
-Get:8 http://mirror.ayous.org/debian/ unstable/main libpcre3 mipsel 8.02-1.1 [233 kB]
-Get:9 http://mirror.ayous.org/debian/ unstable/main libxml2 mipsel 2.7.8.dfsg-2 [833 kB]
-Get:10 http://mirror.ayous.org/debian/ unstable/main html2text mipsel 1.3.2a-15 [103 kB]
-Get:11 http://mirror.ayous.org/debian/ unstable/main libglib2.0-0 mipsel 2.24.2-1 [1039 kB]
-Get:12 http://mirror.ayous.org/debian/ unstable/main libcroco3 mipsel 0.6.2-1 [110 kB]
-Get:13 http://mirror.ayous.org/debian/ unstable/main libunistring0 mipsel 0.9.3-3 [411 kB]
-Get:14 http://mirror.ayous.org/debian/ unstable/main gettext mipsel 0.18.1.1-3 [2023 kB]
-Get:15 http://mirror.ayous.org/debian/ unstable/main intltool-debian all 0.35.0+20060710.1 [30.8 kB]
-Get:16 http://mirror.ayous.org/debian/ unstable/main po-debconf all 1.0.16+nmu1 [223 kB]
-Get:17 http://mirror.ayous.org/debian/ unstable/main debhelper all 8.1.0 [552 kB]
-Get:18 http://mirror.ayous.org/debian/ unstable/main zlib1g-dev mipsel 1:1.2.3.4.dfsg-3 [192 kB]
-debconf: delaying package configuration, since apt-utils is not installed
-Fetched 10.1 MB in 2s (4869 kB/s)
-Selecting previously deselected package bsdmainutils.
-(Reading database ... 10134 files and directories currently installed.)
-Unpacking bsdmainutils (from .../bsdmainutils_8.2.2_mipsel.deb) ...
-Selecting previously deselected package groff-base.
-Unpacking groff-base (from .../groff-base_1.20.1-10_mipsel.deb) ...
-Selecting previously deselected package man-db.
-Unpacking man-db (from .../man-db_2.5.7-8_mipsel.deb) ...
-Selecting previously deselected package libmagic1.
-Unpacking libmagic1 (from .../libmagic1_5.04-5_mipsel.deb) ...
-Selecting previously deselected package file.
-Unpacking file (from .../file_5.04-5_mipsel.deb) ...
-Selecting previously deselected package gettext-base.
-Unpacking gettext-base (from .../gettext-base_0.18.1.1-3_mipsel.deb) ...
-Selecting previously deselected package libpcre3.
-Unpacking libpcre3 (from .../libpcre3_8.02-1.1_mipsel.deb) ...
-Selecting previously deselected package libxml2.
-Unpacking libxml2 (from .../libxml2_2.7.8.dfsg-2_mipsel.deb) ...
-Selecting previously deselected package html2text.
-Unpacking html2text (from .../html2text_1.3.2a-15_mipsel.deb) ...
-Selecting previously deselected package libglib2.0-0.
-Unpacking libglib2.0-0 (from .../libglib2.0-0_2.24.2-1_mipsel.deb) ...
-Selecting previously deselected package libcroco3.
-Unpacking libcroco3 (from .../libcroco3_0.6.2-1_mipsel.deb) ...
-Selecting previously deselected package libunistring0.
-Unpacking libunistring0 (from .../libunistring0_0.9.3-3_mipsel.deb) ...
-Selecting previously deselected package gettext.
-Unpacking gettext (from .../gettext_0.18.1.1-3_mipsel.deb) ...
-Selecting previously deselected package intltool-debian.
-Unpacking intltool-debian (from .../intltool-debian_0.35.0+20060710.1_all.deb) ...
-Selecting previously deselected package po-debconf.
-Unpacking po-debconf (from .../po-debconf_1.0.16+nmu1_all.deb) ...
-Selecting previously deselected package debhelper.
-Unpacking debhelper (from .../debhelper_8.1.0_all.deb) ...
-Selecting previously deselected package cdbs.
-Unpacking cdbs (from .../archives/cdbs_0.4.92_all.deb) ...
-Selecting previously deselected package zlib1g-dev.
-Unpacking zlib1g-dev (from .../zlib1g-dev_1%3a1.2.3.4.dfsg-3_mipsel.deb) ...
-Setting up bsdmainutils (8.2.2) ...
-update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode.
-update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode.
-Setting up groff-base (1.20.1-10) ...
-Setting up man-db (2.5.7-8) ...
-Building database of manual pages ...
-Setting up libmagic1 (5.04-5) ...
-Setting up file (5.04-5) ...
-Setting up gettext-base (0.18.1.1-3) ...
-Setting up libpcre3 (8.02-1.1) ...
-Setting up libxml2 (2.7.8.dfsg-2) ...
-Setting up html2text (1.3.2a-15) ...
-Setting up libglib2.0-0 (2.24.2-1) ...
-Setting up libcroco3 (0.6.2-1) ...
-Setting up libunistring0 (0.9.3-3) ...
-Setting up gettext (0.18.1.1-3) ...
-Setting up intltool-debian (0.35.0+20060710.1) ...
-Setting up po-debconf (1.0.16+nmu1) ...
-Setting up debhelper (8.1.0) ...
-Setting up cdbs (0.4.92) ...
-Setting up zlib1g-dev (1:1.2.3.4.dfsg-3) ...
+Installing positive dependencies:
Removing negative dependencies:
Checking correctness of source dependencies...
-Kernel: Linux 2.6.33-rc7 mipsel (mips64)
-Toolchain package versions: libc6-dev_2.11.2-6 dpkg-dev_1.15.8.5 linux-libc-dev_2.6.32-23 gcc-4.4_4.4.5-2 g++-4.4_4.4.5-2 binutils_2.20.1-15 libstdc++6-4.4-dev_4.4.5-2 libstdc++6_4.4.5-2
-Package versions: apt_0.8.6 base-files_5.9 base-passwd_3.5.22 bash_4.1-3 binutils_2.20.1-15 bsdmainutils_8.2.2 bsdutils_1:2.17.2-3.3 build-essential_11.5 bzip2_1.0.5-6 cdbs_0.4.92 coreutils_8.5-1 cpp_4:4.4.5-1 cpp-4.4_4.4.5-2 dash_0.5.5.1-7 debconf_1.5.36 debconf-i18n_1.5.36 debfoster_2.7-1.1 debhelper_8.1.0 debian-archive-keyring_2010.08.28 debianutils_3.4.1 diffutils_1:3.0-1 dpkg_1.15.8.5 dpkg-dev_1.15.8.5 e2fslibs_1.41.12-2 e2fsprogs_1.41.12-2 fakeroot_1.14.4-1 file_5.04-5 findutils_4.4.2-1 g++_4:4.4.5-1 g++-4.4_4.4.5-2 gcc_4:4.4.5-1 gcc-4.4_4.4.5-2 gcc-4.4-base_4.4.5-2 gettext_0.18.1.1-3 gettext-base_0.18.1.1-3 gnupg_1.4.10-4 gpgv_1.4.10-4 grep_2.6.3-3 groff-base_1.20.1-10 gzip_1.3.12-9 hostname_3.04 html2text_1.3.2a-15 initscripts_2.88dsf-12 insserv_1.14.0-2 intltool-debian_0.35.0+20060710.1 libacl1_2.2.49-4 libattr1_1:2.4.44-2 libblkid1_2.17.2-3.3 libbz2-1.0_1.0.5-6 libc-bin_2.11.2-6 libc-dev-bin_2.11.2-6 libc6_2.11.2-6 libc6-dev_2.11.2-6 libcomerr2_1.41.12-2 libcroco3_0.6.2-1 libdb4.7_4.7.25-9 libdb4.8_4.8.30-2 libdpkg-perl_1.15.8.5 libgc1c2_1:6.8-1.2 libgcc1_1:4.4.5-2 libgdbm3_1.8.3-9 libglib2.0-0_2.24.2-1 libgmp3c2_2:4.3.2+dfsg-1 libgomp1_4.4.5-2 liblocale-gettext-perl_1.05-6 liblzma2_4.999.9beta+20100810-1 libmagic1_5.04-5 libmpfr1ldbl_2.4.2-3 libmpfr4_3.0.0-2 libncurses5_5.7+20100313-4 libpam-modules_1.1.1-6 libpam-runtime_1.1.1-6 libpam0g_1.1.1-6 libpcre3_8.02-1.1 libreadline6_6.1-3 libselinux1_2.0.96-1 libsepol1_2.0.41-1 libslang2_2.2.2-4 libss2_1.41.12-2 libstdc++6_4.4.5-2 libstdc++6-4.4-dev_4.4.5-2 libtext-charwidth-perl_0.04-6 libtext-iconv-perl_1.7-2 libtext-wrapi18n-perl_0.06-7 libtimedate-perl_1.2000-1 libunistring0_0.9.3-3 libusb-0.1-4_2:0.1.12-16 libuuid1_2.17.2-3.3 libxml2_2.7.8.dfsg-2 linux-libc-dev_2.6.32-23 login_1:4.1.4.2+svn3283-2 lsb-base_3.2-26 make_3.81-8 man-db_2.5.7-8 mawk_1.3.3-15 mount_2.17.2-3.3 ncurses-base_5.7+20100313-4 ncurses-bin_5.7+20100313-4 passwd_1:4.1.4.2+svn3283-2 patch_2.6-3 perl_5.10.1-15 perl-base_5.10.1-15 perl-modules_5.10.1-15 po-debconf_1.0.16+nmu1 readline-common_6.1-3 sed_4.2.1-7 sensible-utils_0.0.4 sudo_1.7.4p4-4 sysv-rc_2.88dsf-12 sysvinit_2.88dsf-12 sysvinit-utils_2.88dsf-12 tar_1.23-3 tzdata_2010m-1 util-linux_2.17.2-3.3 xz-utils_4.999.9beta+20100810-1 zlib1g_1:1.2.3.4.dfsg-3 zlib1g-dev_1:1.2.3.4.dfsg-3
+Kernel: Linux 2.6.32-5-sb1-bcm91250a mipsel (mips64)
+Toolchain package versions: libc6-dev_2.11.2-11 dpkg-dev_1.15.8.10 linux-libc-dev_2.6.37-2 gcc-4.4_4.4.5-13 g++-4.4_4.4.5-13 binutils_2.21.0.20110302-1 libstdc++6-4.4-dev_4.4.5-13 libstdc++6_4.5.2-4
+Package versions: apt_0.8.12 base-files_6.1 base-passwd_3.5.22 bash_4.1-3 binutils_2.21.0.20110302-1 bsdmainutils_8.2.2 bsdutils_1:2.17.2-9.1 build-essential_11.5 bzip2_1.0.5-6 coreutils_8.5-1 cpio_2.11-7 cpp_4:4.4.5-4 cpp-4.4_4.4.5-13 dash_0.5.5.1-7.4 debconf_1.5.38 debconf-i18n_1.5.38 debhelper_8.1.2 debian-archive-keyring_2010.08.28 debianutils_3.4.4 diffutils_1:3.0-1 dmsetup_2:1.02.63-2 dpkg_1.15.8.10 dpkg-dev_1.15.8.10 e2fslibs_1.41.12-2 e2fsprogs_1.41.12-2 fakeroot_1.14.5-2 file_5.04-5 findutils_4.4.2-1+b1 g++_4:4.4.5-4 g++-4.4_4.4.5-13 gcc_4:4.4.5-4 gcc-4.3-base_4.3.5-4 gcc-4.4_4.4.5-13 gcc-4.4-base_4.4.5-13 gcc-4.5-base_4.5.2-4 gettext_0.18.1.1-3 gettext-base_0.18.1.1-3 gnupg_1.4.11-3 gpgv_1.4.11-3 grep_2.6.3-3 groff-base_1.21-4 gzip_1.3.12-9 hostname_3.06 html2text_1.3.2a-15 initscripts_2.88dsf-13.1 insserv_1.14.0-2 intltool-debian_0.35.0+20060710.1 libacl1_2.2.49-4 libattr1_1:2.4.44-2 libblkid1_2.17.2-9.1 libbz2-1.0_1.0.5-6 libc-bin_2.11.2-11 libc-dev-bin_2.11.2-11 libc6_2.11.2-11 libc6-dev_2.11.2-11 libcomerr2_1.41.12-2 libcroco3_0.6.2-1 libdb4.7_4.7.25-12 libdb4.8_4.8.30-5 libdevmapper1.02.1_2:1.02.63-2 libdpkg-perl_1.15.8.10 libgcc1_1:4.5.2-4 libgdbm3_1.8.3-9 libglib2.0-0_2.28.1-1+b1 libgmp10_2:5.0.1+dfsg-6 libgmp3c2_2:4.3.2+dfsg-1 libgomp1_4.5.2-4 liblocale-gettext-perl_1.05-6 liblzma1_4.999.9beta+20091116-1 liblzma2_5.0.0-2 libmagic1_5.04-5 libmpfr1ldbl_2.4.2-3 libmpfr4_3.0.0-9 libncurses5_5.8+20110307-1 libncursesw5_5.8+20110307-1 libpam-modules_1.1.2-2 libpam-runtime_1.1.2-2 libpam0g_1.1.2-2 libpcre3_8.12-3 libpipeline1_1.1.0-1 libpopt0_1.16-1 libreadline6_6.1-3 libselinux1_2.0.96-1 libsepol1_2.0.42-1 libslang2_2.2.2-4 libss2_1.41.12-2 libstdc++6_4.5.2-4 libstdc++6-4.4-dev_4.4.5-13 libtext-charwidth-perl_0.04-6 libtext-iconv-perl_1.7-2 libtext-wrapi18n-perl_0.06-7 libtimedate-perl_1.2000-1 libudev0_166-1 libunistring0_0.9.3-3 libusb-0.1-4_2:0.1.12-17 libuuid1_2.17.2-9.1 libxml2_2.7.8.dfsg-2 linux-libc-dev_2.6.37-2 login_1:4.1.4.2+svn3283-3 lsb-base_3.2-27 lzma_4.43-14 make_3.81-8 man-db_2.5.9-4 mawk_1.3.3-15 mount_2.17.2-9.1 ncurses-base_5.8+20110307-1 ncurses-bin_5.8+20110307-1 passwd_1:4.1.4.2+svn3283-3 patch_2.6.1-1 perl_5.10.1-17 perl-base_5.10.1-17 perl-modules_5.10.1-17 pkg-config_0.25-1.1 po-debconf_1.0.16+nmu1 procps_1:3.2.8-10 readline-common_6.1-3 sed_4.2.1-9 sensible-utils_0.0.6 sysv-rc_2.88dsf-13.1 sysvinit_2.88dsf-13.1 sysvinit-utils_2.88dsf-13.1 tar_1.25-3 tzdata_2011c-1 udev_166-1 util-linux_2.17.2-9.1 xz-utils_5.0.0-2 zlib1g_1:1.2.3.4.dfsg-3 zlib1g-dev_1:1.2.3.4.dfsg-3
┌──────────────────────────────────────────────────────────────────────────────┐
│ Build │
@@ -221,12 +118,12 @@ Unpack source
dpkg-source: warning: -sn is not a valid option for Dpkg::Source::Package::V3::quilt
gpgv: keyblock resource `/home/buildd/.gnupg/trustedkeys.gpg': file open error
-gpgv: Signature made Tue Feb 8 07:20:43 2011 UTC using RSA key ID 2295D502
+gpgv: Signature made Fri Mar 11 21:59:41 2011 UTC using DSA key ID C09FD35A
gpgv: Can't check signature: public key not found
-dpkg-source: warning: failed to verify signature on ./bwa_0.5.9-1.dsc
+dpkg-source: warning: failed to verify signature on ./bwa_0.5.9-2.dsc
dpkg-source: info: extracting bwa in bwa-0.5.9
dpkg-source: info: unpacking bwa_0.5.9.orig.tar.bz2
-dpkg-source: info: unpacking bwa_0.5.9-1.debian.tar.gz
+dpkg-source: info: unpacking bwa_0.5.9-2.debian.tar.gz
Check disc space
────────────────
@@ -241,155 +138,155 @@ dpkg-buildpackage: export CXXFLAGS from dpkg-buildflags (origin: vendor): -g -O2
dpkg-buildpackage: export FFLAGS from dpkg-buildflags (origin: vendor): -g -O2
dpkg-buildpackage: export LDFLAGS from dpkg-buildflags (origin: vendor):
dpkg-buildpackage: source package bwa
-dpkg-buildpackage: source version 0.5.9-1
+dpkg-buildpackage: source version 0.5.9-2
dpkg-source --before-build bwa-0.5.9
dpkg-buildpackage: host architecture mipsel
/usr/bin/fakeroot debian/rules clean
-test -x debian/rules
-dh_testroot
-rm -f debian/stamp-makefile-build debian/stamp-makefile-install
-/usr/bin/make -C . CFLAGS="-g -O2 -g -O2" CXXFLAGS="-g -O2 -g -O2" CPPFLAGS="" LDFLAGS="" -k clean
-make[1]: Entering directory `/build/buildd-bwa_0.5.9-1-mipsel-9vjpUu/bwa-0.5.9'
-make[2]: Entering directory `/build/buildd-bwa_0.5.9-1-mipsel-9vjpUu/bwa-0.5.9'
+dh clean
+ dh_testdir
+ dh_auto_clean
+make[1]: Entering directory `/build/buildd-bwa_0.5.9-2-mipsel-OgcXgn/bwa-0.5.9'
+make[2]: Entering directory `/build/buildd-bwa_0.5.9-2-mipsel-OgcXgn/bwa-0.5.9'
rm -f gmon.out *.o a.out bwa *~ *.a
-make[2]: Leaving directory `/build/buildd-bwa_0.5.9-1-mipsel-9vjpUu/bwa-0.5.9'
-make[2]: Entering directory `/build/buildd-bwa_0.5.9-1-mipsel-9vjpUu/bwa-0.5.9/bwt_gen'
+make[2]: Leaving directory `/build/buildd-bwa_0.5.9-2-mipsel-OgcXgn/bwa-0.5.9'
+make[2]: Entering directory `/build/buildd-bwa_0.5.9-2-mipsel-OgcXgn/bwa-0.5.9/bwt_gen'
rm -f gmon.out *.o a.out *~ *.a
-make[2]: Leaving directory `/build/buildd-bwa_0.5.9-1-mipsel-9vjpUu/bwa-0.5.9/bwt_gen'
-make[1]: Leaving directory `/build/buildd-bwa_0.5.9-1-mipsel-9vjpUu/bwa-0.5.9'
-dh_clean
+make[2]: Leaving directory `/build/buildd-bwa_0.5.9-2-mipsel-OgcXgn/bwa-0.5.9/bwt_gen'
+make[1]: Leaving directory `/build/buildd-bwa_0.5.9-2-mipsel-OgcXgn/bwa-0.5.9'
+ dh_clean
debian/rules build
-test -x debian/rules
-mkdir -p "."
-/usr/bin/make -C . CFLAGS="-g -O2 -g -O2" CXXFLAGS="-g -O2 -g -O2" CPPFLAGS="" LDFLAGS=""
-make[1]: Entering directory `/build/buildd-bwa_0.5.9-1-mipsel-9vjpUu/bwa-0.5.9'
-make[2]: Entering directory `/build/buildd-bwa_0.5.9-1-mipsel-9vjpUu/bwa-0.5.9'
+dh build
+ dh_testdir
+ dh_auto_configure
+ dh_auto_build
+make[1]: Entering directory `/build/buildd-bwa_0.5.9-2-mipsel-OgcXgn/bwa-0.5.9'
+make[2]: Entering directory `/build/buildd-bwa_0.5.9-2-mipsel-OgcXgn/bwa-0.5.9'
make[2]: Nothing to be done for `lib'.
-make[2]: Leaving directory `/build/buildd-bwa_0.5.9-1-mipsel-9vjpUu/bwa-0.5.9'
-make[2]: Entering directory `/build/buildd-bwa_0.5.9-1-mipsel-9vjpUu/bwa-0.5.9/bwt_gen'
-gcc -c -g -O2 -g -O2 -DHAVE_PTHREAD bwt_gen.c -o bwt_gen.o
-gcc -c -g -O2 -g -O2 -DHAVE_PTHREAD QSufSort.c -o QSufSort.o
+make[2]: Leaving directory `/build/buildd-bwa_0.5.9-2-mipsel-OgcXgn/bwa-0.5.9'
+make[2]: Entering directory `/build/buildd-bwa_0.5.9-2-mipsel-OgcXgn/bwa-0.5.9/bwt_gen'
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD bwt_gen.c -o bwt_gen.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD QSufSort.c -o QSufSort.o
ar -cru libbwtgen.a bwt_gen.o QSufSort.o
-make[2]: Leaving directory `/build/buildd-bwa_0.5.9-1-mipsel-9vjpUu/bwa-0.5.9/bwt_gen'
-gcc -c -g -O2 -g -O2 -DHAVE_PTHREAD utils.c -o utils.o
-gcc -c -g -O2 -g -O2 -DHAVE_PTHREAD bwt.c -o bwt.o
-gcc -c -g -O2 -g -O2 -DHAVE_PTHREAD bwtio.c -o bwtio.o
-gcc -c -g -O2 -g -O2 -DHAVE_PTHREAD bwtaln.c -o bwtaln.o
-gcc -c -g -O2 -g -O2 -DHAVE_PTHREAD bwtgap.c -o bwtgap.o
-gcc -c -g -O2 -g -O2 -DHAVE_PTHREAD is.c -o is.o
-gcc -c -g -O2 -g -O2 -DHAVE_PTHREAD bntseq.c -o bntseq.o
-gcc -c -g -O2 -g -O2 -DHAVE_PTHREAD bwtmisc.c -o bwtmisc.o
-gcc -c -g -O2 -g -O2 -DHAVE_PTHREAD bwtindex.c -o bwtindex.o
-gcc -c -g -O2 -g -O2 -DHAVE_PTHREAD stdaln.c -o stdaln.o
-gcc -c -g -O2 -g -O2 -DHAVE_PTHREAD simple_dp.c -o simple_dp.o
-gcc -c -g -O2 -g -O2 -DHAVE_PTHREAD bwaseqio.c -o bwaseqio.o
-gcc -c -g -O2 -g -O2 -DHAVE_PTHREAD bwase.c -o bwase.o
-gcc -c -g -O2 -g -O2 -DHAVE_PTHREAD bwape.c -o bwape.o
-gcc -c -g -O2 -g -O2 -DHAVE_PTHREAD kstring.c -o kstring.o
-gcc -c -g -O2 -g -O2 -DHAVE_PTHREAD cs2nt.c -o cs2nt.o
-gcc -c -g -O2 -g -O2 -DHAVE_PTHREAD bwtsw2_core.c -o bwtsw2_core.o
-gcc -c -g -O2 -g -O2 -DHAVE_PTHREAD bwtsw2_main.c -o bwtsw2_main.o
-gcc -c -g -O2 -g -O2 -DHAVE_PTHREAD bwtsw2_aux.c -o bwtsw2_aux.o
-gcc -c -g -O2 -g -O2 -DHAVE_PTHREAD bwt_lite.c -o bwt_lite.o
-gcc -c -g -O2 -g -O2 -DHAVE_PTHREAD bwtsw2_chain.c -o bwtsw2_chain.o
-gcc -c -g -O2 -g -O2 -DHAVE_PTHREAD bamlite.c -o bamlite.o
-gcc -c -g -O2 -g -O2 -DHAVE_PTHREAD main.c -o main.o
-gcc -g -O2 -g -O2 -DHAVE_PTHREAD utils.o bwt.o bwtio.o bwtaln.o bwtgap.o is.o bntseq.o bwtmisc.o bwtindex.o stdaln.o simple_dp.o bwaseqio.o bwase.o bwape.o kstring.o cs2nt.o bwtsw2_core.o bwtsw2_main.o bwtsw2_aux.o bwt_lite.o bwtsw2_chain.o bamlite.o main.o -o bwa -lm -lz -lpthread -Lbwt_gen -lbwtgen
-make[1]: Leaving directory `/build/buildd-bwa_0.5.9-1-mipsel-9vjpUu/bwa-0.5.9'
-touch debian/stamp-makefile-build
-DEB_MAKE_CHECK_TARGET unset, not running checks
+make[2]: Leaving directory `/build/buildd-bwa_0.5.9-2-mipsel-OgcXgn/bwa-0.5.9/bwt_gen'
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD utils.c -o utils.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD bwt.c -o bwt.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD bwtio.c -o bwtio.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD bwtaln.c -o bwtaln.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD bwtgap.c -o bwtgap.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD is.c -o is.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD bntseq.c -o bntseq.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD bwtmisc.c -o bwtmisc.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD bwtindex.c -o bwtindex.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD stdaln.c -o stdaln.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD simple_dp.c -o simple_dp.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD bwaseqio.c -o bwaseqio.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD bwase.c -o bwase.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD bwape.c -o bwape.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD kstring.c -o kstring.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD cs2nt.c -o cs2nt.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD bwtsw2_core.c -o bwtsw2_core.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD bwtsw2_main.c -o bwtsw2_main.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD bwtsw2_aux.c -o bwtsw2_aux.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD bwt_lite.c -o bwt_lite.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD bwtsw2_chain.c -o bwtsw2_chain.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD bamlite.c -o bamlite.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD main.c -o main.o
+gcc -g -Wall -O2 -DHAVE_PTHREAD utils.o bwt.o bwtio.o bwtaln.o bwtgap.o is.o bntseq.o bwtmisc.o bwtindex.o stdaln.o simple_dp.o bwaseqio.o bwase.o bwape.o kstring.o cs2nt.o bwtsw2_core.o bwtsw2_main.o bwtsw2_aux.o bwt_lite.o bwtsw2_chain.o bamlite.o main.o -o bwa -lm -lz -lpthread -Lbwt_gen -lbwtgen
+make[1]: Leaving directory `/build/buildd-bwa_0.5.9-2-mipsel-OgcXgn/bwa-0.5.9'
+ dh_auto_test
/usr/bin/fakeroot debian/rules binary-arch
-test -x debian/rules
-dh_testroot
-dh_prep
-dh_installdirs -A
-mkdir -p "."
-DEB_MAKE_CHECK_TARGET unset, not running checks
-DEB_MAKE_INSTALL_TARGET unset, skipping default makefile.mk common-install target
-Adding cdbs dependencies to debian/bwa.substvars
-dh_installdirs -pbwa
-dh_installdocs -pbwa ./README ./NEWS
-dh_installexamples -pbwa
-dh_installman -pbwa
-dh_installinfo -pbwa
-dh_installmenu -pbwa
-dh_installcron -pbwa
-dh_installinit -pbwa
-dh_installdebconf -pbwa
-dh_installemacsen -pbwa
-dh_installcatalogs -pbwa
-dh_installpam -pbwa
-dh_installlogrotate -pbwa
-dh_installlogcheck -pbwa
-dh_installchangelogs -pbwa ./ChangeLog
-dh_installudev -pbwa
-dh_lintian -pbwa
-dh_bugfiles -pbwa
-dh_install -pbwa
-dh_link -pbwa
-dh_installmime -pbwa
-dh_strip -pbwa
-dh_compress -pbwa
-dh_fixperms -pbwa
-dh_makeshlibs -pbwa
-dh_installdeb -pbwa
-dh_perl -pbwa
-dh_shlibdeps -pbwa
-dh_gencontrol -pbwa
+dh binary-arch
+ dh_testroot -a
+ dh_prep -a
+ dh_installdirs -a
+ dh_auto_install -a
+ dh_install -a
+ dh_installdocs -a
+ dh_installchangelogs -a
+ dh_installexamples -a
+ dh_installman -a
+ dh_installcatalogs -a
+ dh_installcron -a
+ dh_installdebconf -a
+ dh_installemacsen -a
+ dh_installifupdown -a
+ dh_installinfo -a
+ dh_installinit -a
+ dh_installmenu -a
+ dh_installmime -a
+ dh_installmodules -a
+ dh_installlogcheck -a
+ dh_installlogrotate -a
+ dh_installpam -a
+ dh_installppp -a
+ dh_installudev -a
+ dh_installwm -a
+ dh_installxfonts -a
+ dh_bugfiles -a
+ dh_lintian -a
+ dh_gconf -a
+ dh_icons -a
+ dh_perl -a
+ dh_usrlocal -a
+ dh_link -a
+ dh_compress -a
+ dh_fixperms -a
+ dh_strip -a
+ dh_makeshlibs -a
+ dh_shlibdeps -a
+ dh_installdeb -a
+ dh_gencontrol -a
dpkg-gencontrol: warning: package bwa: unused substitution variable ${perl:Depends}
-dh_md5sums -pbwa
-dh_builddeb -pbwa
-dpkg-deb: building package `bwa' in `../bwa_0.5.9-1_mipsel.deb'.
- dpkg-genchanges -B -mmipsel Build Daemon (monteverdi) <buildd_mipsel-monteverdi at buildd.debian.org> >../bwa_0.5.9-1_mipsel.changes
+ dh_md5sums -a
+ dh_builddeb -a
+dpkg-deb: building package `bwa' in `../bwa_0.5.9-2_mipsel.deb'.
+ dpkg-genchanges -B -mmipsel Build Daemon (mayer) <buildd_mips-mayer at buildd.debian.org> >../bwa_0.5.9-2_mipsel.changes
dpkg-genchanges: arch-specific upload - not including arch-independent packages
dpkg-genchanges: binary-only upload - not including any source code
dpkg-source --after-build bwa-0.5.9
dpkg-buildpackage: binary only upload (no source included)
────────────────────────────────────────────────────────────────────────────────
-Build finished at 20110208-1318
+Build finished at 20110312-0810
-bwa_0.5.9-1_mipsel.changes:
+bwa_0.5.9-2_mipsel.changes:
Format: 1.8
-Date: Tue, 08 Feb 2011 16:11:12 +0900
+Date: Fri, 11 Mar 2011 22:49:07 +0100
Source: bwa
Binary: bwa
Architecture: mipsel
-Version: 0.5.9-1
+Version: 0.5.9-2
Distribution: sid
Urgency: low
-Maintainer: mipsel Build Daemon (monteverdi) <buildd_mipsel-monteverdi at buildd.debian.org>
-Changed-By: Charles Plessy <plessy at debian.org>
+Maintainer: mipsel Build Daemon (mayer) <buildd_mips-mayer at buildd.debian.org>
+Changed-By: Andreas Tille <tille at debian.org>
Description:
bwa - Burrows-Wheeler Aligner
Changes:
- bwa (0.5.9-1) unstable; urgency=low
+ bwa (0.5.9-2) unstable; urgency=low
.
- * New usptream release
- - Upstream moved to GitHub (debian/upstream-metadata.yaml).
- - Checked copyright; one file was removed (debian/copyright).
- * Migrated the Debian source package to Git (debian/control).
- * Use Debhelper 8 (debian/control, debian/compat).
+ * Watchfile should not regard rc releases.
+ * Drop cdbs in favour of dh
Checksums-Sha1:
- 83efb08fe3f4c356780afb66bb8aca68f78600d5 157276 bwa_0.5.9-1_mipsel.deb
+ 9d2436a366d1b0917a710177f92dcd94653062d0 157254 bwa_0.5.9-2_mipsel.deb
Checksums-Sha256:
- c7669f6291a12ab71bc129dc270a68628eda67602a4128e517f13d3b22984036 157276 bwa_0.5.9-1_mipsel.deb
+ 29afbb425133000aee5e8386937d3cd60a3a32b2598f1f05947ae8304c2c9d5c 157254 bwa_0.5.9-2_mipsel.deb
Files:
- 4fe2161fb763a828f545819c8c39e7fa 157276 science optional bwa_0.5.9-1_mipsel.deb
+ ba069260a458dd8bfd3ccbe0d8cab0bc 157254 science optional bwa_0.5.9-2_mipsel.deb
┌──────────────────────────────────────────────────────────────────────────────┐
│ Package contents │
└──────────────────────────────────────────────────────────────────────────────┘
-bwa_0.5.9-1_mipsel.deb
+bwa_0.5.9-2_mipsel.deb
──────────────────────
new debian package, version 2.0.
- size 157276 bytes: control archive= 977 bytes.
+ size 157254 bytes: control archive= 974 bytes.
775 bytes, 17 lines control
615 bytes, 10 lines md5sums
Package: bwa
- Version: 0.5.9-1
+ Version: 0.5.9-2
Architecture: mipsel
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
Installed-Size: 372
@@ -406,25 +303,25 @@ bwa_0.5.9-1_mipsel.deb
to around 100 kbp. Both algorithms do gapped alignment. They are usually more
accurate and faster on queries with low error rates.
-drwxr-xr-x root/root 0 2011-02-08 13:18 ./
-drwxr-xr-x root/root 0 2011-02-08 13:18 ./usr/
-drwxr-xr-x root/root 0 2011-02-08 13:18 ./usr/share/
-drwxr-xr-x root/root 0 2011-02-08 13:18 ./usr/share/doc/
-drwxr-xr-x root/root 0 2011-02-08 13:18 ./usr/share/doc/bwa/
--rw-r--r-- root/root 17912 2011-01-25 00:00 ./usr/share/doc/bwa/changelog.gz
--rw-r--r-- root/root 17912 2011-01-25 00:00 ./usr/share/doc/bwa/ChangeLog.gz
--rw-r--r-- root/root 634 2011-01-25 00:00 ./usr/share/doc/bwa/README
--rw-r--r-- root/root 881 2011-02-08 07:11 ./usr/share/doc/bwa/changelog.Debian.gz
--rw-r--r-- root/root 5857 2011-01-25 00:00 ./usr/share/doc/bwa/NEWS.gz
--rw-r--r-- root/root 2676 2011-02-08 07:09 ./usr/share/doc/bwa/copyright
-drwxr-xr-x root/root 0 2011-02-08 13:18 ./usr/share/bwa/
+drwxr-xr-x root/root 0 2011-03-12 08:09 ./
+drwxr-xr-x root/root 0 2011-03-12 08:09 ./usr/
+drwxr-xr-x root/root 0 2011-03-12 08:10 ./usr/bin/
+-rwxr-xr-x root/root 254656 2011-03-12 08:10 ./usr/bin/bwa
+drwxr-xr-x root/root 0 2011-03-12 08:09 ./usr/share/
+drwxr-xr-x root/root 0 2011-03-12 08:09 ./usr/share/bwa/
-rwxr-xr-x root/root 3176 2011-01-25 00:00 ./usr/share/bwa/solid2fastq.pl
-rwxr-xr-x root/root 616 2011-01-25 00:00 ./usr/share/bwa/qualfa2fq.pl
-drwxr-xr-x root/root 0 2011-02-08 13:18 ./usr/share/man/
-drwxr-xr-x root/root 0 2011-02-08 13:18 ./usr/share/man/man1/
--rw-r--r-- root/root 7554 2011-02-08 13:18 ./usr/share/man/man1/bwa.1.gz
-drwxr-xr-x root/root 0 2011-02-08 13:18 ./usr/bin/
--rwxr-xr-x root/root 254656 2011-02-08 13:18 ./usr/bin/bwa
+drwxr-xr-x root/root 0 2011-03-12 08:09 ./usr/share/doc/
+drwxr-xr-x root/root 0 2011-03-12 08:09 ./usr/share/doc/bwa/
+-rw-r--r-- root/root 5857 2011-01-25 00:00 ./usr/share/doc/bwa/NEWS.gz
+-rw-r--r-- root/root 634 2011-01-25 00:00 ./usr/share/doc/bwa/README
+-rw-r--r-- root/root 2676 2011-02-08 07:09 ./usr/share/doc/bwa/copyright
+-rw-r--r-- root/root 17912 2011-01-25 00:00 ./usr/share/doc/bwa/changelog.gz
+-rw-r--r-- root/root 17912 2011-01-25 00:00 ./usr/share/doc/bwa/ChangeLog.gz
+-rw-r--r-- root/root 957 2011-03-11 21:54 ./usr/share/doc/bwa/changelog.Debian.gz
+drwxr-xr-x root/root 0 2011-03-12 08:09 ./usr/share/man/
+drwxr-xr-x root/root 0 2011-03-12 08:09 ./usr/share/man/man1/
+-rw-r--r-- root/root 7554 2011-03-12 08:09 ./usr/share/man/man1/bwa.1.gz
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -433,9 +330,8 @@ drwxr-xr-x root/root 0 2011-02-08 13:18 ./usr/bin/
Built successfully
────────────────────────────────────────────────────────────────────────────────
-Purging /var/lib/schroot/mount/sid-mipsel-sbuild-8a96403e-aef9-4007-9c02-1fefc0fbb7d8/build/buildd-bwa_0.5.9-1-mipsel-9vjpUu
-Not removing build depends: cloned chroot in use
+Purging /var/lib/schroot/mount/sid-mipsel-sbuild-9a01b7d6-45b0-4c77-98ec-f57807330914/build/buildd-bwa_0.5.9-2-mipsel-OgcXgn
────────────────────────────────────────────────────────────────────────────────
-Finished at 20110208-1318
-Build needed 00:04:43, 2712k disc space
+Finished at 20110312-0810
+Build needed 00:02:09, 2712k disc space
diff --git a/powerpc.log b/powerpc.log
index d8ba34b..6c3dd12 100644
--- a/powerpc.log
+++ b/powerpc.log
@@ -1,96 +1,69 @@
-From buildd at voltaire.debian.org Tue Feb 08 09:03:56 2011
-Return-path: <buildd at voltaire.debian.org>
-Received: from merikanto.debian.org ([2001:858:2:2:216:35ff:fec4:a49a])
+From buildd at praetorius.debian.org Sat Mar 12 07:28:30 2011
+Return-path: <buildd at praetorius.debian.org>
+Received: from kokkonen.debian.org ([82.195.75.97])
from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
- CN=merikanto.debian.org,
- EMAIL=hostmaster at merikanto.debian.org (verified)
+ CN=kokkonen.debian.org,
+ EMAIL=hostmaster at kokkonen.debian.org (verified)
by grieg.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
- (Exim 4.69) (envelope-from <buildd at voltaire.debian.org>)
- id 1PmjUK-0004Dh-77
- for logs at buildd.debian.org; Tue, 08 Feb 2011 09:03:56 +0000
-Received: from static-72-66-115-54.washdc.fios.verizon.net ([72.66.115.54]
- helo=voltaire.debian.org)
+ (Exim 4.69) (envelope-from <buildd at praetorius.debian.org>)
+ id 1PyJFV-0000Dt-MD
+ for logs at buildd.debian.org; Sat, 12 Mar 2011 07:28:30 +0000
+Received: from [2001:6b0:e:2a18:204:acff:fede:459f]
+ (helo=praetorius.debian.org)
from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
- CN=voltaire.debian.org,
- EMAIL=hostmaster at voltaire.debian.org (verified)
- by merikanto.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
- (Exim 4.69) (envelope-from <buildd at voltaire.debian.org>)
- id 1PmjUI-0002SJ-NG; Tue, 08 Feb 2011 09:03:55 +0000
-Received: from buildd by voltaire.debian.org with local (Exim 4.69)
- (envelope-from <buildd at voltaire.debian.org>)
- id 1PmjUB-00069N-Fb; Tue, 08 Feb 2011 09:03:47 +0000
-From: buildd on voltaire <buildd at voltaire.debian.org>
+ CN=praetorius.debian.org,
+ EMAIL=hostmaster at praetorius.debian.org (verified)
+ by kokkonen.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
+ (Exim 4.69) (envelope-from <buildd at praetorius.debian.org>)
+ id 1PyJFU-0004In-3r; Sat, 12 Mar 2011 07:28:28 +0000
+Received: from buildd by praetorius.debian.org with local (Exim 4.69)
+ (envelope-from <buildd at praetorius.debian.org>)
+ id 1PyJFS-0005Dv-A7; Sat, 12 Mar 2011 07:28:26 +0000
+From: buildd on praetorius <buildd at praetorius.debian.org>
To: wouter+buildd at grep.be,logs at buildd.debian.org
-Subject: Log for successful build of bwa_0.5.9-1 on powerpc (dist=sid)
+Subject: Log for successful build of bwa_0.5.9-2 on powerpc (dist=sid)
Content-Type: text/plain; charset=UTF-8
Content-Transfer-Encoding: 8bit
-Message-Id: <E1PmjUB-00069N-Fb at voltaire.debian.org>
-Date: Tue, 08 Feb 2011 09:03:47 +0000
+Message-Id: <E1PyJFS-0005Dv-A7 at praetorius.debian.org>
+Date: Sat, 12 Mar 2011 07:28:26 +0000
Delivered-To: logs at buildd.debian.org
-sbuild (Debian sbuild) 0.60.0 (23 Feb 2010) on voltaire.debian.org
+sbuild (Debian sbuild) 0.60.5 (14 Nov 2010) on praetorius.debian.org
╔══════════════════════════════════════════════════════════════════════════════╗
-║ bwa 0.5.9-1 (powerpc) 08 Feb 2011 09:00 ║
+║ bwa 0.5.9-2 (powerpc) 12 Mar 2011 07:26 ║
╚══════════════════════════════════════════════════════════════════════════════╝
Package: bwa
-Version: 0.5.9-1
+Version: 0.5.9-2
Architecture: powerpc
-Chroot Build Dir: /var/lib/schroot/mount/sid-powerpc-sbuild-2c45f9c7-7419-4779-bb11-9d254b562d98/build/buildd-bwa_0.5.9-1-powerpc-A4NKHn
-Start Time: 20110208-0900
-Get:1 http://incoming.debian.org sid Release.gpg [835 B]
-Ign http://incoming.debian.org/debian/ sid/contrib Translation-en
-Ign http://incoming.debian.org/debian/ sid/main Translation-en
-Get:2 http://incoming.debian.org Release.gpg [835 B]
-Ign http://incoming.debian.org/buildd-unstable/ Translation-en
-Get:3 http://incoming.debian.org sid Release [104 kB]
-Get:4 http://incoming.debian.org Release [1604 B]
-Get:5 http://http.us.debian.org sid Release.gpg [835 B]
-Ign http://http.us.debian.org/debian/ sid/contrib Translation-en
-Ign http://http.us.debian.org/debian/ sid/main Translation-en
-Get:6 http://http.us.debian.org sid Release [104 kB]
-Get:7 http://incoming.debian.org sid/main Sources/DiffIndex [2038 B]
-Get:8 http://incoming.debian.org sid/contrib Sources/DiffIndex [2023 B]
-Get:9 http://incoming.debian.org sid/main powerpc Packages/DiffIndex [2038 B]
-Get:10 http://incoming.debian.org sid/contrib powerpc Packages/DiffIndex [2023 B]
-Get:11 http://incoming.debian.org Sources [43.1 kB]
-Get:12 http://http.us.debian.org sid/main Sources/DiffIndex [2038 B]
-Get:13 http://incoming.debian.org Packages [680 kB]
-Get:14 http://incoming.debian.org sid/main 2011-02-08-0211.24.pdiff [13.5 kB]
-Get:15 http://incoming.debian.org sid/contrib 2011-02-08-0211.24.pdiff [266 B]
-Get:16 http://incoming.debian.org sid/main powerpc 2011-02-08-0211.24.pdiff [5220 B]
-Get:17 http://incoming.debian.org sid/main 2011-02-08-0211.24.pdiff [13.5 kB]
-Get:18 http://incoming.debian.org sid/contrib powerpc 2011-02-08-0211.24.pdiff [301 B]
-Get:19 http://http.us.debian.org sid/contrib Sources/DiffIndex [2023 B]
-Get:20 http://http.us.debian.org sid/main powerpc Packages/DiffIndex [2038 B]
-Get:21 http://http.us.debian.org sid/contrib powerpc Packages/DiffIndex [2023 B]
-Get:22 http://incoming.debian.org sid/main 2011-02-08-0211.24.pdiff [13.5 kB]
-Get:23 http://incoming.debian.org sid/contrib 2011-02-08-0211.24.pdiff [266 B]
-Get:24 http://http.us.debian.org sid/main 2011-02-08-0211.24.pdiff [13.5 kB]
-Get:25 http://http.us.debian.org sid/contrib 2011-02-08-0211.24.pdiff [266 B]
-Get:26 http://incoming.debian.org sid/main powerpc 2011-02-08-0211.24.pdiff [5220 B]
-Get:27 http://incoming.debian.org sid/contrib powerpc 2011-02-08-0211.24.pdiff [301 B]
-Get:28 http://http.us.debian.org sid/main 2011-02-08-0211.24.pdiff [13.5 kB]
-Get:29 http://http.us.debian.org sid/contrib 2011-02-08-0211.24.pdiff [266 B]
-Get:30 http://http.us.debian.org sid/main powerpc 2011-02-08-0211.24.pdiff [5220 B]
-Get:31 http://http.us.debian.org sid/main powerpc 2011-02-08-0211.24.pdiff [5220 B]
-Get:32 http://http.us.debian.org sid/contrib powerpc 2011-02-08-0211.24.pdiff [301 B]
-Get:33 http://http.us.debian.org sid/contrib powerpc 2011-02-08-0211.24.pdiff [301 B]
-Get:34 http://incoming.debian.org sid/contrib 2011-02-08-0211.24.pdiff [266 B]
-Get:35 http://incoming.debian.org sid/main 2011-02-08-0812.10.pdiff [3472 B]
-Get:36 http://incoming.debian.org sid/main powerpc 2011-02-08-0211.24.pdiff [5220 B]
-Get:37 http://incoming.debian.org sid/main 2011-02-08-0812.10.pdiff [3472 B]
-Get:38 http://incoming.debian.org sid/contrib powerpc 2011-02-08-0211.24.pdiff [301 B]
-Get:39 http://http.us.debian.org sid/main 2011-02-08-0211.24.pdiff [13.5 kB]
-Get:40 http://incoming.debian.org sid/main powerpc 2011-02-08-0812.10.pdiff [1594 B]
-Get:41 http://incoming.debian.org sid/main powerpc 2011-02-08-0812.10.pdiff [1594 B]
-Get:42 http://http.us.debian.org sid/contrib 2011-02-08-0211.24.pdiff [266 B]
-Get:43 http://http.us.debian.org sid/main powerpc 2011-02-08-0211.24.pdiff [5220 B]
-Get:44 http://http.us.debian.org sid/contrib powerpc 2011-02-08-0211.24.pdiff [301 B]
-Get:45 http://incoming.debian.org sid/main 2011-02-08-0812.10.pdiff [3472 B]
-Get:46 http://incoming.debian.org sid/main powerpc 2011-02-08-0812.10.pdiff [1594 B]
-Fetched 994 kB in 45s (21.8 kB/s)
+Chroot Build Dir: /var/lib/schroot/mount/sid-powerpc-sbuild-2e6ed642-9c26-42ce-8b7b-835e7b3b23a0/build/buildd-bwa_0.5.9-2-powerpc-jKvOaA
+Start Time: 20110312-0726
+Get:1 http://ftp.se.debian.org unstable InRelease [147 kB]
+Get:2 http://ftp.se.debian.org unstable/main Sources [4196 kB]
+Get:3 http://incoming.debian.org unstable InRelease [147 kB]
+Get:4 http://ftp.se.debian.org unstable/contrib Sources [38.7 kB]
+Get:5 http://ftp.se.debian.org unstable/non-free Sources [81.8 kB]
+Get:6 http://ftp.se.debian.org unstable/main powerpc Packages [6921 kB]
+Get:7 http://ftp.se.debian.org unstable/contrib powerpc Packages [51.6 kB]
+Ign http://ftp.se.debian.org unstable/contrib TranslationIndex
+Get:8 http://ftp.se.debian.org unstable/main TranslationIndex [2232 B]
+Ign http://ftp.se.debian.org unstable/contrib Translation-en
+Ign http://incoming.debian.org InRelease
+Get:9 http://incoming.debian.org Release.gpg [835 B]
+Get:10 http://incoming.debian.org unstable/main Sources [4193 kB]
+Get:11 http://incoming.debian.org unstable/contrib Sources [38.7 kB]
+Get:12 http://incoming.debian.org unstable/non-free Sources [81.8 kB]
+Get:13 http://incoming.debian.org unstable/main powerpc Packages [6918 kB]
+Get:14 http://incoming.debian.org unstable/contrib powerpc Packages [51.6 kB]
+Ign http://incoming.debian.org unstable/contrib TranslationIndex
+Get:15 http://incoming.debian.org unstable/main TranslationIndex [2232 B]
+Get:16 http://incoming.debian.org Release [1604 B]
+Get:17 http://incoming.debian.org Sources [36.1 kB]
+Get:18 http://incoming.debian.org Packages [524 kB]
+Ign http://incoming.debian.org unstable/contrib Translation-en
+Ign http://incoming.debian.org Translation-en
+Fetched 23.4 MB in 23s (979 kB/s)
Reading package lists...
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -112,54 +85,48 @@ Reading state information...
NOTICE: 'bwa' packaging is maintained in the 'Git' version control system at:
git://git.debian.org/git/debian-med/bwa.git
Need to get 119 kB of source archives.
-Get:1 http://incoming.debian.org/buildd-unstable/ bwa 0.5.9-1 (dsc) [1894 B]
-Get:2 http://incoming.debian.org/buildd-unstable/ bwa 0.5.9-1 (tar) [114 kB]
-Get:3 http://incoming.debian.org/buildd-unstable/ bwa 0.5.9-1 (diff) [3651 B]
-Fetched 119 kB in 0s (572 kB/s)
+Get:1 http://incoming.debian.org/buildd-unstable/ bwa 0.5.9-2 (dsc) [1245 B]
+Get:2 http://incoming.debian.org/buildd-unstable/ bwa 0.5.9-2 (tar) [114 kB]
+Get:3 http://incoming.debian.org/buildd-unstable/ bwa 0.5.9-2 (diff) [3828 B]
+Fetched 119 kB in 0s (145 kB/s)
Download complete and in download only mode
Check arch
──────────
** Using build dependencies supplied by package:
-Build-Depends: cdbs, debhelper (>= 8), zlib1g-dev
+Build-Depends: debhelper (>= 8), zlib1g-dev
┌──────────────────────────────────────────────────────────────────────────────┐
│ Install build dependencies (internal resolver) │
└──────────────────────────────────────────────────────────────────────────────┘
Checking for already installed source dependencies...
-cdbs: missing
-debhelper: already installed (8.1.0 >= 8 is satisfied)
+debhelper: already installed (8.1.1 >= 8 is satisfied)
zlib1g-dev: missing
Checking for source dependency conflicts...
-Installing positive dependencies: cdbs zlib1g-dev
+Installing positive dependencies: zlib1g-dev
Reading package lists...
Building dependency tree...
Reading state information...
-Suggested packages:
- devscripts doc-base
-Recommended packages:
- autotools-dev
The following NEW packages will be installed:
- cdbs zlib1g-dev
+ zlib1g-dev
+0 upgraded, 1 newly installed, 0 to remove and 36 not upgraded.
+Need to get 190 kB of archives.
+After this operation, 426 kB of additional disk space will be used.
+Get:1 http://ftp.se.debian.org/debian/ unstable/main zlib1g-dev powerpc 1:1.2.3.4.dfsg-3 [190 kB]
debconf: delaying package configuration, since apt-utils is not installed
-0 upgraded, 2 newly installed, 0 to remove and 1 not upgraded.
-Need to get 0 B/1431 kB of archives.
-After this operation, 2122 kB of additional disk space will be used.
-Selecting previously deselected package cdbs.
-(Reading database ... 14253 files and directories currently installed.)
-Unpacking cdbs (from .../archives/cdbs_0.4.89_all.deb) ...
+Fetched 190 kB in 0s (3835 kB/s)
Selecting previously deselected package zlib1g-dev.
+(Reading database ... 11479 files and directories currently installed.)
Unpacking zlib1g-dev (from .../zlib1g-dev_1%3a1.2.3.4.dfsg-3_powerpc.deb) ...
Processing triggers for man-db ...
-Setting up cdbs (0.4.89) ...
Setting up zlib1g-dev (1:1.2.3.4.dfsg-3) ...
Removing negative dependencies:
Checking correctness of source dependencies...
-Kernel: Linux 2.6.26-2-powerpc-smp powerpc (ppc)
-Toolchain package versions: libc6-dev_2.11.2-11 dpkg-dev_1.15.8.10 linux-libc-dev_2.6.32-30 gcc-4.4_4.4.5-10 g++-4.4_4.4.5-10 binutils_2.20.1-16 libstdc++6-4.4-dev_4.4.5-10 libstdc++6_4.4.5-10
-Package versions: adduser_3.112+nmu2 apt_0.8.10.3 base-files_6.0 base-passwd_3.5.22 bash_4.1-3 binutils_2.20.1-16 bsdmainutils_8.2.2 bsdutils_1:2.17.2-9 build-essential_11.5 bzip2_1.0.5-6 cdbs_0.4.89 coreutils_8.5-1 cpio_2.11-6 cpp_4:4.4.5-2 cpp-4.4_4.4.5-10 dash_0.5.5.1-7.4 debconf_1.5.38 debconf-english_1.5.38 debfoster_2.7-1.1 debhelper_8.1.0 debian-archive-keyring_2010.08.28 debianutils_3.4.3 diffutils_1:3.0-1 dpkg_1.15.8.10 dpkg-dev_1.15.8.10 e2fslibs_1.41.12-2 e2fsprogs_1.41.12-2 fakeroot_1.14.5-1 file_5.04-5 findutils_4.4.2-1+b1 g++_4:4.4.5-2 g++-4.4_4.4.5-10 gcc_4:4.4.5-2 gcc-4.4_4.4.5-10 gcc-4.4-base_4.4.5-10 gettext_0.18.1.1-3 gettext-base_0.18.1.1-3 gnupg_1.4.10-4 gpgv_1.4.10-4 grep_2.6.3-3 groff-base_1.20.1-10 gzip_1.3.12-9 hostname_3.05 html2text_1.3.2a-15 ifupdown_0.6.10 initscripts_2.88dsf-13.1 insserv_1.14.0-2 install-info_4.13a.dfsg.1-6 intltool-debian_0.35.0+20060710.1 libacl1_2.2.49-4 libalgorithm-diff-perl_1.19.02-2 libalgorithm-merge-perl_0.08-2 libattr1_1:2.4.44-2 libblkid1_2.17.2-9 libbz2-1.0_1.0.5-6 libc-bin_2.11.2-11 libc-dev-bin_2.11.2-11 libc6_2.11.2-11 libc6-dev_2.11.2-11 libcomerr2_1.41.12-2 libcroco3_0.6.2-1 libdb4.7_4.7.25-12 libdb4.8_4.8.30-4 libdpkg-perl_1.15.8.10 libgc1c2_1:6.8-1.2 libgcc1_1:4.4.5-10 libgcrypt11_1.4.5-2 libgdbm3_1.8.3-9 libglib2.0-0_2.24.2-1 libgmp3c2_2:4.3.2+dfsg-1 libgnutls26_2.8.6-1 libgomp1_4.4.5-10 libgpg-error0_1.6-1 libgpm2_1.20.4-3.3 libldap-2.4-2_2.4.23-7 liblzma2_5.0.0-2 liblzo2-2_2.03-2 libmagic1_5.04-5 libmpfr4_3.0.0-2 libncurses5_5.7+20100313-5 libncursesw5_5.7+20100313-5 libnewt0.52_0.52.11-2 libopencdk10_0.6.6-1 libpam-modules_1.1.1-6.1 libpam-runtime_1.1.1-6.1 libpam0g_1.1.1-6.1 libpcre3_8.02-1.1 libpng12-0_1.2.44-1 libpopt0_1.16-1 libreadline6_6.1-3 libsasl2-2_2.1.23.dfsg1-7 libselinux1_2.0.96-1 libsepol1_2.0.42-1 libslang2_2.2.2-4 libss2_1.41.12-2 libssl0.9.8_0.9.8o-4 libstdc++6_4.4.5-10 libstdc++6-4.4-dev_4.4.5-10 libsysfs2_2.1.0+repack-1 libtasn1-3_2.7-1 libtext-charwidth-perl_0.04-6+b1 libtext-wrapi18n-perl_0.06-7 libtimedate-perl_1.2000-1 libunistring0_0.9.3-3 libusb-0.1-4_2:0.1.12-16 libuuid1_2.17.2-9 libxml2_2.7.8.dfsg-2 linux-libc-dev_2.6.32-30 login_1:4.1.4.2+svn3283-2 lsb-base_3.2-27 make_3.81-8 man-db_2.5.7-8 manpages_3.27-1 manpages-dev_3.27-1 mawk_1.3.3-15 mount_2.17.2-9 ncurses-base_5.7+20100313-5 ncurses-bin_5.7+20100313-5 net-tools_1.60-23 netbase_4.45 passwd_1:4.1.4.2+svn3283-2 patch_2.6-3 perl_5.10.1-17 perl-base_5.10.1-17 perl-modules_5.10.1-17 po-debconf_1.0.16+nmu1 procps_1:3.2.8-10 psmisc_22.13-1 readline-common_6.1-3 sed_4.2.1-8 sensible-utils_0.0.6 sgml-base_1.26+nmu1 shared-mime-info_0.71-4 sudo_1.7.4p4-6 sysv-rc_2.88dsf-13.1 sysvinit_2.88dsf-13.1 sysvinit-utils_2.88dsf-13.1 tar_1.25-3 tzdata_2011a-1 util-linux_2.17.2-9 whiptail_0.52.11-2 xml-core_0.13 xz-utils_5.0.0-2 zlib1g_1:1.2.3.4.dfsg-3 zlib1g-dev_1:1.2.3.4.dfsg-3
+Kernel: Linux 2.6.26-2-powerpc64 powerpc (ppc64)
+Toolchain package versions: libc6-dev_2.11.2-11 dpkg-dev_1.15.8.10 linux-libc-dev_2.6.32-30 gcc-4.5_ =*=NOT INSTALLED=*= g++-4.5_ =*=NOT INSTALLED=*= binutils_2.20.1-16 libstdc++6-4.5-dev_ =*=NOT INSTALLED=*= libstdc++6_4.4.5-10
+Package versions: apt_0.8.11.1 base-files_6.1 base-passwd_3.5.22 bash_4.1-3 binutils_2.20.1-16 bsdmainutils_8.2.2 bsdutils_1:2.17.2-9 build-essential_11.5 bzip2_1.0.5-6 coreutils_8.5-1 cpp_4:4.4.5-2 cpp-4.4_4.4.5-10 dash_0.5.5.1-7.4 debconf_1.5.38 debconf-i18n_1.5.38 debfoster_2.7-1.1 debhelper_8.1.1 debian-archive-keyring_2010.08.28 debianutils_3.4.4 diffutils_1:3.0-1 dpkg_1.15.8.10 dpkg-dev_1.15.8.10 e2fslibs_1.41.12-2 e2fsprogs_1.41.12-2 fakeroot_1.14.5-2 file_5.04-5 findutils_4.4.2-1+b1 g++_4:4.4.5-2 g++-4.4_4.4.5-10 gcc_4:4.4.5-2 gcc-4.4_4.4.5-10 gcc-4.4-base_4.4.5-10 gettext_0.18.1.1-3 gettext-base_0.18.1.1-3 gnupg_1.4.10-4 gpgv_1.4.10-4 grep_2.6.3-3 groff-base_1.21-4 gzip_1.3.12-9 hostname_3.05 html2text_1.3.2a-15 initscripts_2.88dsf-13.1 insserv_1.14.0-2 intltool-debian_0.35.0+20060710.1 libacl1_2.2.49-4 libattr1_1:2.4.44-2 libblkid1_2.17.2-9 libbz2-1.0_1.0.5-6 libc-bin_2.11.2-11 libc-dev-bin_2.11.2-11 libc6_2.11.2-11 libc6-dev_2.11.2-11 libcomerr2_1.41.12-2 libcroco3_0.6.2-1 libdb4.7_4.7.25-12 libdb4.8_4.8.30-5 libdpkg-perl_1.15.8.10 libgc1c2_1:6.8-1.2 libgcc1_1:4.4.5-10 libgdbm3_1.8.3-9 libglib2.0-0_2.28.0-1 libgmp3c2_2:4.3.2+dfsg-1 libgomp1_4.4.5-10 liblocale-gettext-perl_1.05-6 liblzma2_5.0.0-2 libmagic1_5.04-5 libmpfr4_3.0.0-2 libncurses5_5.7+20100313-5 libpam-modules_1.1.1-6.1 libpam-runtime_1.1.1-6.1 libpam0g_1.1.1-6.1 libpcre3_8.12-2 libpipeline1_1.1.0-1 libreadline6_6.1-3 libselinux1_2.0.96-1 libsepol1_2.0.42-1 libslang2_2.2.2-4 libss2_1.41.12-2 libstdc++6_4.4.5-10 libstdc++6-4.4-dev_4.4.5-10 libtext-charwidth-perl_0.04-6+b1 libtext-iconv-perl_1.7-2 libtext-wrapi18n-perl_0.06-7 libtimedate-perl_1.2000-1 libunistring0_0.9.3-3 libusb-0.1-4_2:0.1.12-17 libuuid1_2.17.2-9 libxml2_2.7.8.dfsg-2 linux-libc-dev_2.6.32-30 login_1:4.1.4.2+svn3283-2 lsb-base_3.2-27 make_3.81-8 man-db_2.5.9-4 mawk_1.3.3-15 mount_2.17.2-9 ncurses-base_5.7+20100313-5 ncurses-bin_5.7+20100313-5 passwd_1:4.1.4.2+svn3283-2 patch_2.6.1-1 perl_5.10.1-17 perl-base_5.10.1-17 perl-modules_5.10.1-17 po-debconf_1.0.16+nmu1 readline-common_6.1-3 sed_4.2.1-9 sensible-utils_0.0.6 sudo_1.7.4p6-1 sysv-rc_2.88dsf-13.1 sysvinit_2.88dsf-13.1 sysvinit-utils_2.88dsf-13.1 tar_1.25-3 tzdata_2011b-2 util-linux_2.17.2-9 xz-utils_5.0.0-2 zlib1g_1:1.2.3.4.dfsg-3 zlib1g-dev_1:1.2.3.4.dfsg-3
┌──────────────────────────────────────────────────────────────────────────────┐
│ Build │
@@ -171,12 +138,12 @@ Unpack source
dpkg-source: warning: -sn is not a valid option for Dpkg::Source::Package::V3::quilt
gpgv: keyblock resource `/home/buildd/.gnupg/trustedkeys.gpg': file open error
-gpgv: Signature made Tue Feb 8 07:20:43 2011 UTC using RSA key ID 2295D502
+gpgv: Signature made Fri Mar 11 21:59:41 2011 UTC using DSA key ID C09FD35A
gpgv: Can't check signature: public key not found
-dpkg-source: warning: failed to verify signature on ./bwa_0.5.9-1.dsc
+dpkg-source: warning: failed to verify signature on ./bwa_0.5.9-2.dsc
dpkg-source: info: extracting bwa in bwa-0.5.9
dpkg-source: info: unpacking bwa_0.5.9.orig.tar.bz2
-dpkg-source: info: unpacking bwa_0.5.9-1.debian.tar.gz
+dpkg-source: info: unpacking bwa_0.5.9-2.debian.tar.gz
Check disc space
────────────────
@@ -191,155 +158,155 @@ dpkg-buildpackage: export CXXFLAGS from dpkg-buildflags (origin: vendor): -g -O2
dpkg-buildpackage: export FFLAGS from dpkg-buildflags (origin: vendor): -g -O2
dpkg-buildpackage: export LDFLAGS from dpkg-buildflags (origin: vendor):
dpkg-buildpackage: source package bwa
-dpkg-buildpackage: source version 0.5.9-1
-dpkg: warning: failed to open configuration file '/home/buildd/.dpkg.cfg' for reading: Permission denied
+dpkg-buildpackage: source version 0.5.9-2
dpkg-source --before-build bwa-0.5.9
dpkg-buildpackage: host architecture powerpc
/usr/bin/fakeroot debian/rules clean
-test -x debian/rules
-dh_testroot
-rm -f debian/stamp-makefile-build debian/stamp-makefile-install
-/usr/bin/make -C . CFLAGS="-g -O2 -g -Wall -O2" CXXFLAGS="-g -O2 -g -Wall -O2" CPPFLAGS="" LDFLAGS="" -k clean
-make[1]: Entering directory `/build/buildd-bwa_0.5.9-1-powerpc-A4NKHn/bwa-0.5.9'
-make[2]: Entering directory `/build/buildd-bwa_0.5.9-1-powerpc-A4NKHn/bwa-0.5.9'
+dh clean
+ dh_testdir
+ dh_auto_clean
+make[1]: Entering directory `/build/buildd-bwa_0.5.9-2-powerpc-jKvOaA/bwa-0.5.9'
+make[2]: Entering directory `/build/buildd-bwa_0.5.9-2-powerpc-jKvOaA/bwa-0.5.9'
rm -f gmon.out *.o a.out bwa *~ *.a
-make[2]: Leaving directory `/build/buildd-bwa_0.5.9-1-powerpc-A4NKHn/bwa-0.5.9'
-make[2]: Entering directory `/build/buildd-bwa_0.5.9-1-powerpc-A4NKHn/bwa-0.5.9/bwt_gen'
+make[2]: Leaving directory `/build/buildd-bwa_0.5.9-2-powerpc-jKvOaA/bwa-0.5.9'
+make[2]: Entering directory `/build/buildd-bwa_0.5.9-2-powerpc-jKvOaA/bwa-0.5.9/bwt_gen'
rm -f gmon.out *.o a.out *~ *.a
-make[2]: Leaving directory `/build/buildd-bwa_0.5.9-1-powerpc-A4NKHn/bwa-0.5.9/bwt_gen'
-make[1]: Leaving directory `/build/buildd-bwa_0.5.9-1-powerpc-A4NKHn/bwa-0.5.9'
-dh_clean
+make[2]: Leaving directory `/build/buildd-bwa_0.5.9-2-powerpc-jKvOaA/bwa-0.5.9/bwt_gen'
+make[1]: Leaving directory `/build/buildd-bwa_0.5.9-2-powerpc-jKvOaA/bwa-0.5.9'
+ dh_clean
debian/rules build
-test -x debian/rules
-mkdir -p "."
-/usr/bin/make -C . CFLAGS="-g -O2 -g -Wall -O2" CXXFLAGS="-g -O2 -g -Wall -O2" CPPFLAGS="" LDFLAGS=""
-make[1]: Entering directory `/build/buildd-bwa_0.5.9-1-powerpc-A4NKHn/bwa-0.5.9'
-make[2]: Entering directory `/build/buildd-bwa_0.5.9-1-powerpc-A4NKHn/bwa-0.5.9'
+dh build
+ dh_testdir
+ dh_auto_configure
+ dh_auto_build
+make[1]: Entering directory `/build/buildd-bwa_0.5.9-2-powerpc-jKvOaA/bwa-0.5.9'
+make[2]: Entering directory `/build/buildd-bwa_0.5.9-2-powerpc-jKvOaA/bwa-0.5.9'
make[2]: Nothing to be done for `lib'.
-make[2]: Leaving directory `/build/buildd-bwa_0.5.9-1-powerpc-A4NKHn/bwa-0.5.9'
-make[2]: Entering directory `/build/buildd-bwa_0.5.9-1-powerpc-A4NKHn/bwa-0.5.9/bwt_gen'
-gcc -c -g -O2 -g -Wall -O2 -DHAVE_PTHREAD bwt_gen.c -o bwt_gen.o
-gcc -c -g -O2 -g -Wall -O2 -DHAVE_PTHREAD QSufSort.c -o QSufSort.o
+make[2]: Leaving directory `/build/buildd-bwa_0.5.9-2-powerpc-jKvOaA/bwa-0.5.9'
+make[2]: Entering directory `/build/buildd-bwa_0.5.9-2-powerpc-jKvOaA/bwa-0.5.9/bwt_gen'
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD bwt_gen.c -o bwt_gen.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD QSufSort.c -o QSufSort.o
ar -cru libbwtgen.a bwt_gen.o QSufSort.o
-make[2]: Leaving directory `/build/buildd-bwa_0.5.9-1-powerpc-A4NKHn/bwa-0.5.9/bwt_gen'
-gcc -c -g -O2 -g -Wall -O2 -DHAVE_PTHREAD utils.c -o utils.o
-gcc -c -g -O2 -g -Wall -O2 -DHAVE_PTHREAD bwt.c -o bwt.o
-gcc -c -g -O2 -g -Wall -O2 -DHAVE_PTHREAD bwtio.c -o bwtio.o
-gcc -c -g -O2 -g -Wall -O2 -DHAVE_PTHREAD bwtaln.c -o bwtaln.o
-gcc -c -g -O2 -g -Wall -O2 -DHAVE_PTHREAD bwtgap.c -o bwtgap.o
-gcc -c -g -O2 -g -Wall -O2 -DHAVE_PTHREAD is.c -o is.o
-gcc -c -g -O2 -g -Wall -O2 -DHAVE_PTHREAD bntseq.c -o bntseq.o
-gcc -c -g -O2 -g -Wall -O2 -DHAVE_PTHREAD bwtmisc.c -o bwtmisc.o
-gcc -c -g -O2 -g -Wall -O2 -DHAVE_PTHREAD bwtindex.c -o bwtindex.o
-gcc -c -g -O2 -g -Wall -O2 -DHAVE_PTHREAD stdaln.c -o stdaln.o
-gcc -c -g -O2 -g -Wall -O2 -DHAVE_PTHREAD simple_dp.c -o simple_dp.o
-gcc -c -g -O2 -g -Wall -O2 -DHAVE_PTHREAD bwaseqio.c -o bwaseqio.o
-gcc -c -g -O2 -g -Wall -O2 -DHAVE_PTHREAD bwase.c -o bwase.o
-gcc -c -g -O2 -g -Wall -O2 -DHAVE_PTHREAD bwape.c -o bwape.o
-gcc -c -g -O2 -g -Wall -O2 -DHAVE_PTHREAD kstring.c -o kstring.o
-gcc -c -g -O2 -g -Wall -O2 -DHAVE_PTHREAD cs2nt.c -o cs2nt.o
-gcc -c -g -O2 -g -Wall -O2 -DHAVE_PTHREAD bwtsw2_core.c -o bwtsw2_core.o
-gcc -c -g -O2 -g -Wall -O2 -DHAVE_PTHREAD bwtsw2_main.c -o bwtsw2_main.o
-gcc -c -g -O2 -g -Wall -O2 -DHAVE_PTHREAD bwtsw2_aux.c -o bwtsw2_aux.o
-gcc -c -g -O2 -g -Wall -O2 -DHAVE_PTHREAD bwt_lite.c -o bwt_lite.o
-gcc -c -g -O2 -g -Wall -O2 -DHAVE_PTHREAD bwtsw2_chain.c -o bwtsw2_chain.o
-gcc -c -g -O2 -g -Wall -O2 -DHAVE_PTHREAD bamlite.c -o bamlite.o
-gcc -c -g -O2 -g -Wall -O2 -DHAVE_PTHREAD main.c -o main.o
-gcc -g -O2 -g -Wall -O2 -DHAVE_PTHREAD utils.o bwt.o bwtio.o bwtaln.o bwtgap.o is.o bntseq.o bwtmisc.o bwtindex.o stdaln.o simple_dp.o bwaseqio.o bwase.o bwape.o kstring.o cs2nt.o bwtsw2_core.o bwtsw2_main.o bwtsw2_aux.o bwt_lite.o bwtsw2_chain.o bamlite.o main.o -o bwa -lm -lz -lpthread -Lbwt_gen -lbwtgen
-make[1]: Leaving directory `/build/buildd-bwa_0.5.9-1-powerpc-A4NKHn/bwa-0.5.9'
-touch debian/stamp-makefile-build
-DEB_MAKE_CHECK_TARGET unset, not running checks
+make[2]: Leaving directory `/build/buildd-bwa_0.5.9-2-powerpc-jKvOaA/bwa-0.5.9/bwt_gen'
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD utils.c -o utils.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD bwt.c -o bwt.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD bwtio.c -o bwtio.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD bwtaln.c -o bwtaln.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD bwtgap.c -o bwtgap.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD is.c -o is.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD bntseq.c -o bntseq.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD bwtmisc.c -o bwtmisc.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD bwtindex.c -o bwtindex.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD stdaln.c -o stdaln.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD simple_dp.c -o simple_dp.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD bwaseqio.c -o bwaseqio.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD bwase.c -o bwase.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD bwape.c -o bwape.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD kstring.c -o kstring.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD cs2nt.c -o cs2nt.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD bwtsw2_core.c -o bwtsw2_core.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD bwtsw2_main.c -o bwtsw2_main.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD bwtsw2_aux.c -o bwtsw2_aux.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD bwt_lite.c -o bwt_lite.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD bwtsw2_chain.c -o bwtsw2_chain.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD bamlite.c -o bamlite.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD main.c -o main.o
+gcc -g -Wall -O2 -DHAVE_PTHREAD utils.o bwt.o bwtio.o bwtaln.o bwtgap.o is.o bntseq.o bwtmisc.o bwtindex.o stdaln.o simple_dp.o bwaseqio.o bwase.o bwape.o kstring.o cs2nt.o bwtsw2_core.o bwtsw2_main.o bwtsw2_aux.o bwt_lite.o bwtsw2_chain.o bamlite.o main.o -o bwa -lm -lz -lpthread -Lbwt_gen -lbwtgen
+make[1]: Leaving directory `/build/buildd-bwa_0.5.9-2-powerpc-jKvOaA/bwa-0.5.9'
+ dh_auto_test
/usr/bin/fakeroot debian/rules binary-arch
-test -x debian/rules
-dh_testroot
-dh_prep
-dh_installdirs -A
-mkdir -p "."
-DEB_MAKE_CHECK_TARGET unset, not running checks
-DEB_MAKE_INSTALL_TARGET unset, skipping default makefile.mk common-install target
-Adding cdbs dependencies to debian/bwa.substvars
-dh_installdirs -pbwa
-dh_installdocs -pbwa ./README ./NEWS
-dh_installexamples -pbwa
-dh_installman -pbwa
-dh_installinfo -pbwa
-dh_installmenu -pbwa
-dh_installcron -pbwa
-dh_installinit -pbwa
-dh_installdebconf -pbwa
-dh_installemacsen -pbwa
-dh_installcatalogs -pbwa
-dh_installpam -pbwa
-dh_installlogrotate -pbwa
-dh_installlogcheck -pbwa
-dh_installchangelogs -pbwa ./ChangeLog
-dh_installudev -pbwa
-dh_lintian -pbwa
-dh_install -pbwa
-dh_link -pbwa
-dh_installmime -pbwa
-dh_strip -pbwa
-dh_compress -pbwa
-dh_fixperms -pbwa
-dh_makeshlibs -pbwa
-dh_installdeb -pbwa
-dh_perl -pbwa
-dh_shlibdeps -pbwa
-dh_gencontrol -pbwa
+dh binary-arch
+ dh_testroot -a
+ dh_prep -a
+ dh_installdirs -a
+ dh_auto_install -a
+ dh_install -a
+ dh_installdocs -a
+ dh_installchangelogs -a
+ dh_installexamples -a
+ dh_installman -a
+ dh_installcatalogs -a
+ dh_installcron -a
+ dh_installdebconf -a
+ dh_installemacsen -a
+ dh_installifupdown -a
+ dh_installinfo -a
+ dh_installinit -a
+ dh_installmenu -a
+ dh_installmime -a
+ dh_installmodules -a
+ dh_installlogcheck -a
+ dh_installlogrotate -a
+ dh_installpam -a
+ dh_installppp -a
+ dh_installudev -a
+ dh_installwm -a
+ dh_installxfonts -a
+ dh_bugfiles -a
+ dh_lintian -a
+ dh_gconf -a
+ dh_icons -a
+ dh_perl -a
+ dh_usrlocal -a
+ dh_link -a
+ dh_compress -a
+ dh_fixperms -a
+ dh_strip -a
+ dh_makeshlibs -a
+ dh_shlibdeps -a
+ dh_installdeb -a
+ dh_gencontrol -a
dpkg-gencontrol: warning: package bwa: unused substitution variable ${perl:Depends}
-dh_md5sums -pbwa
-dh_builddeb -pbwa
-dpkg-deb: building package `bwa' in `../bwa_0.5.9-1_powerpc.deb'.
- dpkg-genchanges -B -mpowerpc Build Daemon (voltaire) <buildd_powerpc-voltaire at buildd.debian.org> >../bwa_0.5.9-1_powerpc.changes
+ dh_md5sums -a
+ dh_builddeb -a
+dpkg-deb: building package `bwa' in `../bwa_0.5.9-2_powerpc.deb'.
+ dpkg-genchanges -B -mpowerpc Build Daemon (praetorius) <buildd_powerpc-praetorius at buildd.debian.org> >../bwa_0.5.9-2_powerpc.changes
dpkg-genchanges: arch-specific upload - not including arch-independent packages
dpkg-genchanges: binary-only upload - not including any source code
dpkg-source --after-build bwa-0.5.9
dpkg-buildpackage: binary only upload (no source included)
────────────────────────────────────────────────────────────────────────────────
-Build finished at 20110208-0903
+Build finished at 20110312-0728
-bwa_0.5.9-1_powerpc.changes:
+bwa_0.5.9-2_powerpc.changes:
Format: 1.8
-Date: Tue, 08 Feb 2011 16:11:12 +0900
+Date: Fri, 11 Mar 2011 22:49:07 +0100
Source: bwa
Binary: bwa
Architecture: powerpc
-Version: 0.5.9-1
+Version: 0.5.9-2
Distribution: sid
Urgency: low
-Maintainer: powerpc Build Daemon (voltaire) <buildd_powerpc-voltaire at buildd.debian.org>
-Changed-By: Charles Plessy <plessy at debian.org>
+Maintainer: powerpc Build Daemon (praetorius) <buildd_powerpc-praetorius at buildd.debian.org>
+Changed-By: Andreas Tille <tille at debian.org>
Description:
bwa - Burrows-Wheeler Aligner
Changes:
- bwa (0.5.9-1) unstable; urgency=low
+ bwa (0.5.9-2) unstable; urgency=low
.
- * New usptream release
- - Upstream moved to GitHub (debian/upstream-metadata.yaml).
- - Checked copyright; one file was removed (debian/copyright).
- * Migrated the Debian source package to Git (debian/control).
- * Use Debhelper 8 (debian/control, debian/compat).
+ * Watchfile should not regard rc releases.
+ * Drop cdbs in favour of dh
Checksums-Sha1:
- cc78264519720b5ecc586c1b3c7c1a1533e28613 152162 bwa_0.5.9-1_powerpc.deb
+ 9d00ec430567e9aa4c78c760986ee2b099de88ee 152000 bwa_0.5.9-2_powerpc.deb
Checksums-Sha256:
- b8f6c704282dfa477e1c0cd0e7fd7986c65c11838b077c6bbcbf3c79e96830f3 152162 bwa_0.5.9-1_powerpc.deb
+ 52176df37e3a97a44c1925567063396f407e2486e4e28098b848f96927825a33 152000 bwa_0.5.9-2_powerpc.deb
Files:
- 6f2d8fcaa662eb9287b54e6d68498267 152162 science optional bwa_0.5.9-1_powerpc.deb
+ 3f1b9a0591c9a9ee5ccb6a8b579dd9c6 152000 science optional bwa_0.5.9-2_powerpc.deb
┌──────────────────────────────────────────────────────────────────────────────┐
│ Package contents │
└──────────────────────────────────────────────────────────────────────────────┘
-bwa_0.5.9-1_powerpc.deb
+bwa_0.5.9-2_powerpc.deb
───────────────────────
new debian package, version 2.0.
- size 152162 bytes: control archive= 973 bytes.
+ size 152000 bytes: control archive= 976 bytes.
776 bytes, 17 lines control
615 bytes, 10 lines md5sums
Package: bwa
- Version: 0.5.9-1
+ Version: 0.5.9-2
Architecture: powerpc
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
Installed-Size: 344
@@ -356,25 +323,25 @@ bwa_0.5.9-1_powerpc.deb
to around 100 kbp. Both algorithms do gapped alignment. They are usually more
accurate and faster on queries with low error rates.
-drwxr-xr-x root/root 0 2011-02-08 09:03 ./
-drwxr-xr-x root/root 0 2011-02-08 09:03 ./usr/
-drwxr-xr-x root/root 0 2011-02-08 09:03 ./usr/share/
-drwxr-xr-x root/root 0 2011-02-08 09:03 ./usr/share/doc/
-drwxr-xr-x root/root 0 2011-02-08 09:03 ./usr/share/doc/bwa/
+drwxr-xr-x root/root 0 2011-03-12 07:28 ./
+drwxr-xr-x root/root 0 2011-03-12 07:28 ./usr/
+drwxr-xr-x root/root 0 2011-03-12 07:28 ./usr/bin/
+-rwxr-xr-x root/root 227172 2011-03-12 07:28 ./usr/bin/bwa
+drwxr-xr-x root/root 0 2011-03-12 07:28 ./usr/share/
+drwxr-xr-x root/root 0 2011-03-12 07:28 ./usr/share/bwa/
+-rwxr-xr-x root/root 3176 2011-01-25 00:00 ./usr/share/bwa/solid2fastq.pl
+-rwxr-xr-x root/root 616 2011-01-25 00:00 ./usr/share/bwa/qualfa2fq.pl
+drwxr-xr-x root/root 0 2011-03-12 07:28 ./usr/share/man/
+drwxr-xr-x root/root 0 2011-03-12 07:28 ./usr/share/man/man1/
+-rw-r--r-- root/root 7554 2011-03-12 07:28 ./usr/share/man/man1/bwa.1.gz
+drwxr-xr-x root/root 0 2011-03-12 07:28 ./usr/share/doc/
+drwxr-xr-x root/root 0 2011-03-12 07:28 ./usr/share/doc/bwa/
+-rw-r--r-- root/root 957 2011-03-11 21:54 ./usr/share/doc/bwa/changelog.Debian.gz
+-rw-r--r-- root/root 2676 2011-02-08 07:09 ./usr/share/doc/bwa/copyright
-rw-r--r-- root/root 5857 2011-01-25 00:00 ./usr/share/doc/bwa/NEWS.gz
+-rw-r--r-- root/root 17912 2011-01-25 00:00 ./usr/share/doc/bwa/ChangeLog.gz
-rw-r--r-- root/root 634 2011-01-25 00:00 ./usr/share/doc/bwa/README
--rw-r--r-- root/root 2676 2011-02-08 07:09 ./usr/share/doc/bwa/copyright
-rw-r--r-- root/root 17912 2011-01-25 00:00 ./usr/share/doc/bwa/changelog.gz
--rw-r--r-- root/root 17912 2011-01-25 00:00 ./usr/share/doc/bwa/ChangeLog.gz
--rw-r--r-- root/root 881 2011-02-08 07:11 ./usr/share/doc/bwa/changelog.Debian.gz
-drwxr-xr-x root/root 0 2011-02-08 09:03 ./usr/share/man/
-drwxr-xr-x root/root 0 2011-02-08 09:03 ./usr/share/man/man1/
--rw-r--r-- root/root 7554 2011-02-08 09:03 ./usr/share/man/man1/bwa.1.gz
-drwxr-xr-x root/root 0 2011-02-08 09:03 ./usr/share/bwa/
--rwxr-xr-x root/root 3176 2011-01-25 00:00 ./usr/share/bwa/solid2fastq.pl
--rwxr-xr-x root/root 616 2011-01-25 00:00 ./usr/share/bwa/qualfa2fq.pl
-drwxr-xr-x root/root 0 2011-02-08 09:03 ./usr/bin/
--rwxr-xr-x root/root 227172 2011-02-08 09:03 ./usr/bin/bwa
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -383,12 +350,9 @@ drwxr-xr-x root/root 0 2011-02-08 09:03 ./usr/bin/
Built successfully
────────────────────────────────────────────────────────────────────────────────
-Purging /var/lib/schroot/mount/sid-powerpc-sbuild-2c45f9c7-7419-4779-bb11-9d254b562d98/build/buildd-bwa_0.5.9-1-powerpc-A4NKHn
-(Reading database ... 14333 files and directories currently installed.)
-Removing cdbs ...
-Removing zlib1g-dev ...
-Processing triggers for man-db ...
+Purging /var/lib/schroot/mount/sid-powerpc-sbuild-2e6ed642-9c26-42ce-8b7b-835e7b3b23a0/build/buildd-bwa_0.5.9-2-powerpc-jKvOaA
+Not removing build depends: cloned chroot in use
────────────────────────────────────────────────────────────────────────────────
-Finished at 20110208-0903
-Build needed 00:03:30, 2656k disc space
+Finished at 20110312-0728
+Build needed 00:01:31, 2656k disc space
diff --git a/s390.log b/s390.log
index 1ba5d44..75450a4 100644
--- a/s390.log
+++ b/s390.log
@@ -1,4 +1,4 @@
-From buildd at zandonai.debian.org Tue Feb 08 20:35:27 2011
+From buildd at zandonai.debian.org Sat Mar 12 07:41:59 2011
Return-path: <buildd at zandonai.debian.org>
Received: from merikanto.debian.org ([2001:858:2:2:216:35ff:fec4:a49a])
from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
@@ -6,65 +6,64 @@ Received: from merikanto.debian.org ([2001:858:2:2:216:35ff:fec4:a49a])
EMAIL=hostmaster at merikanto.debian.org (verified)
by grieg.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
(Exim 4.69) (envelope-from <buildd at zandonai.debian.org>)
- id 1PmuHX-00019w-Hl
- for logs at buildd.debian.org; Tue, 08 Feb 2011 20:35:27 +0000
+ id 1PyJSZ-0002B4-Ed
+ for logs at buildd.debian.org; Sat, 12 Mar 2011 07:41:59 +0000
Received: from zandonai.debian.org ([80.245.147.46])
from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
CN=zandonai.debian.org,
EMAIL=hostmaster at zandonai.debian.org (verified)
by merikanto.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
(Exim 4.69) (envelope-from <buildd at zandonai.debian.org>)
- id 1PmuHW-0003pl-6q; Tue, 08 Feb 2011 20:35:26 +0000
+ id 1PyJSW-00009B-AK; Sat, 12 Mar 2011 07:41:56 +0000
Received: from buildd by zandonai.debian.org with local (Exim 4.69)
(envelope-from <buildd at zandonai.debian.org>)
- id 1PmuHV-0006Z7-LC; Tue, 08 Feb 2011 20:35:25 +0000
+ id 1PyJSV-0007QH-Eq; Sat, 12 Mar 2011 07:41:55 +0000
From: buildd on zandonai <buildd at zandonai.debian.org>
To: phil+buildd at philkern.de,logs at buildd.debian.org
-Subject: Log for successful build of bwa_0.5.9-1 on s390 (dist=sid)
+Subject: Log for successful build of bwa_0.5.9-2 on s390 (dist=sid)
Content-Type: text/plain; charset=UTF-8
Content-Transfer-Encoding: 8bit
-Message-Id: <E1PmuHV-0006Z7-LC at zandonai.debian.org>
-Date: Tue, 08 Feb 2011 20:35:25 +0000
+Message-Id: <E1PyJSV-0007QH-Eq at zandonai.debian.org>
+Date: Sat, 12 Mar 2011 07:41:55 +0000
Delivered-To: logs at buildd.debian.org
-sbuild (Debian sbuild) 0.60.0 (23 Feb 2010) on zandonai.debian.org
+sbuild (Debian sbuild) 0.60.5 (14 Nov 2010) on zandonai.debian.org
╔══════════════════════════════════════════════════════════════════════════════╗
-║ bwa 0.5.9-1 (s390) 08 Feb 2011 20:34 ║
+║ bwa 0.5.9-2 (s390) 12 Mar 2011 07:40 ║
╚══════════════════════════════════════════════════════════════════════════════╝
Package: bwa
-Version: 0.5.9-1
+Version: 0.5.9-2
Architecture: s390
-Chroot Build Dir: /var/lib/schroot/mount/sid-s390-sbuild-7b7874c9-18b1-486f-8396-68c0f241110c/build/buildd-bwa_0.5.9-1-s390-AOoRjJ
-Start Time: 20110208-2034
-Get:1 http://ftp.de.debian.org unstable Release.gpg [835 B]
-Ign http://ftp.de.debian.org/debian/ unstable/contrib Translation-en
-Ign http://ftp.de.debian.org/debian/ unstable/main Translation-en
-Get:2 http://ftp.de.debian.org unstable Release [104 kB]
-Get:3 http://ftp.de.debian.org unstable/main Sources [4124 kB]
-Get:4 http://incoming.debian.org unstable Release.gpg [835 B]
-Ign http://incoming.debian.org/debian/ unstable/contrib Translation-en
-Ign http://incoming.debian.org/debian/ unstable/main Translation-en
-Get:5 http://incoming.debian.org Release.gpg [835 B]
-Ign http://incoming.debian.org/buildd-unstable/ Translation-en
-Get:6 http://incoming.debian.org unstable Release [104 kB]
-Get:7 http://incoming.debian.org Release [1604 B]
-Ign http://incoming.debian.org unstable Release
-Get:8 http://incoming.debian.org unstable/main Sources [4124 kB]
-Get:9 http://ftp.de.debian.org unstable/contrib Sources [38.6 kB]
-Get:10 http://ftp.de.debian.org unstable/non-free Sources [84.3 kB]
-Get:11 http://ftp.de.debian.org unstable/main s390 Packages [6796 kB]
-Get:12 http://ftp.de.debian.org unstable/contrib s390 Packages [49.3 kB]
-Get:13 http://incoming.debian.org unstable/contrib Sources [38.6 kB]
-Get:14 http://incoming.debian.org unstable/non-free Sources [84.3 kB]
-Get:15 http://incoming.debian.org unstable/main s390 Packages [6796 kB]
-Get:16 http://incoming.debian.org unstable/contrib s390 Packages [49.3 kB]
-Get:17 http://incoming.debian.org Sources [41.1 kB]
-Get:18 http://incoming.debian.org Packages [571 kB]
-Fetched 23.0 MB in 32s (713 kB/s)
+Chroot Build Dir: /var/lib/schroot/mount/sid-s390-sbuild-6d03f0a3-1e13-41ae-8975-2021916e11a4/build/buildd-bwa_0.5.9-2-s390-1n28HK
+Start Time: 20110312-0740
+Get:1 http://ftp.de.debian.org unstable InRelease [147 kB]
+Get:2 http://ftp.de.debian.org unstable/main Sources [4196 kB]
+Get:3 http://incoming.debian.org unstable InRelease [147 kB]
+Ign http://incoming.debian.org InRelease
+Get:4 http://incoming.debian.org Release.gpg [835 B]
+Get:5 http://incoming.debian.org unstable/main Sources [4193 kB]
+Get:6 http://ftp.de.debian.org unstable/contrib Sources [38.7 kB]
+Get:7 http://ftp.de.debian.org unstable/non-free Sources [81.8 kB]
+Get:8 http://ftp.de.debian.org unstable/main s390 Packages [6829 kB]
+Get:9 http://ftp.de.debian.org unstable/contrib s390 Packages [50.3 kB]
+Ign http://ftp.de.debian.org unstable/contrib TranslationIndex
+Get:10 http://ftp.de.debian.org unstable/main TranslationIndex [2232 B]
+Ign http://ftp.de.debian.org unstable/contrib Translation-en
+Get:11 http://incoming.debian.org unstable/contrib Sources [38.7 kB]
+Get:12 http://incoming.debian.org unstable/non-free Sources [81.8 kB]
+Get:13 http://incoming.debian.org unstable/main s390 Packages [6829 kB]
+Get:14 http://incoming.debian.org unstable/contrib s390 Packages [50.3 kB]
+Ign http://incoming.debian.org unstable/contrib TranslationIndex
+Get:15 http://incoming.debian.org unstable/main TranslationIndex [2232 B]
+Get:16 http://incoming.debian.org Release [1604 B]
+Get:17 http://incoming.debian.org Sources [36.1 kB]
+Get:18 http://incoming.debian.org Packages [524 kB]
+Ign http://incoming.debian.org unstable/contrib Translation-en
+Ign http://incoming.debian.org Translation-en
+Fetched 23.3 MB in 23s (984 kB/s)
Reading package lists...
-W: GPG error: http://incoming.debian.org unstable Release: The following signatures were invalid: BADSIG 9AA38DCD55BE302B Debian Archive Automatic Signing Key (5.0/lenny) <ftpmaster at debian.org>
┌──────────────────────────────────────────────────────────────────────────────┐
│ Fetch source files │
@@ -85,76 +84,77 @@ Reading state information...
NOTICE: 'bwa' packaging is maintained in the 'Git' version control system at:
git://git.debian.org/git/debian-med/bwa.git
Need to get 119 kB of source archives.
-Get:1 http://ftp.de.debian.org/debian/ unstable/main bwa 0.5.9-1 (dsc) [1894 B]
-Get:2 http://ftp.de.debian.org/debian/ unstable/main bwa 0.5.9-1 (tar) [114 kB]
-Get:3 http://ftp.de.debian.org/debian/ unstable/main bwa 0.5.9-1 (diff) [3651 B]
-Fetched 119 kB in 0s (771 kB/s)
+Get:1 http://incoming.debian.org/buildd-unstable/ bwa 0.5.9-2 (dsc) [1245 B]
+Get:2 http://incoming.debian.org/buildd-unstable/ bwa 0.5.9-2 (tar) [114 kB]
+Get:3 http://incoming.debian.org/buildd-unstable/ bwa 0.5.9-2 (diff) [3828 B]
+Fetched 119 kB in 0s (154 kB/s)
Download complete and in download only mode
Check arch
──────────
** Using build dependencies supplied by package:
-Build-Depends: cdbs, debhelper (>= 8), zlib1g-dev
+Build-Depends: debhelper (>= 8), zlib1g-dev
┌──────────────────────────────────────────────────────────────────────────────┐
│ Install build dependencies (internal resolver) │
└──────────────────────────────────────────────────────────────────────────────┘
Checking for already installed source dependencies...
-cdbs: missing
debhelper: missing
-Using default version 8.1.0
+Using default version 8.1.2
zlib1g-dev: missing
Checking for source dependency conflicts...
-Installing positive dependencies: cdbs debhelper zlib1g-dev
+Installing positive dependencies: debhelper zlib1g-dev
Reading package lists...
Building dependency tree...
Reading state information...
The following extra packages will be installed:
bsdmainutils file gettext gettext-base groff-base html2text intltool-debian
- libcroco3 libglib2.0-0 libmagic1 libpcre3 libunistring0 libxml2 man-db
- po-debconf
+ libcroco3 libglib2.0-0 libmagic1 libpcre3 libpipeline1 libunistring0 libxml2
+ man-db po-debconf
Suggested packages:
- wamerican wordlist whois vacation devscripts doc-base dh-make gettext-doc
- groff less www-browser libmail-box-perl
+ wamerican wordlist whois vacation dh-make gettext-doc groff less www-browser
+ libmail-box-perl
Recommended packages:
- autotools-dev curl wget lynx-cur autopoint libglib2.0-data shared-mime-info
- xml-core libmail-sendmail-perl
+ curl wget lynx-cur autopoint libglib2.0-data shared-mime-info xml-core
+ libmail-sendmail-perl
The following NEW packages will be installed:
- bsdmainutils cdbs debhelper file gettext gettext-base groff-base html2text
- intltool-debian libcroco3 libglib2.0-0 libmagic1 libpcre3 libunistring0
- libxml2 man-db po-debconf zlib1g-dev
-0 upgraded, 18 newly installed, 0 to remove and 23 not upgraded.
-Need to get 10.3 MB of archives.
-After this operation, 29.2 MB of additional disk space will be used.
+ bsdmainutils debhelper file gettext gettext-base groff-base html2text
+ intltool-debian libcroco3 libglib2.0-0 libmagic1 libpcre3 libpipeline1
+ libunistring0 libxml2 man-db po-debconf zlib1g-dev
+0 upgraded, 18 newly installed, 0 to remove and 16 not upgraded.
+Need to get 9346 kB of archives.
+After this operation, 28.0 MB of additional disk space will be used.
Get:1 http://ftp.de.debian.org/debian/ unstable/main bsdmainutils s390 8.2.2 [208 kB]
-Get:2 http://ftp.de.debian.org/debian/ unstable/main groff-base s390 1.20.1-10 [1112 kB]
-Get:3 http://incoming.debian.org/buildd-unstable/ libpcre3 8.12-1 [262 kB]
-Get:4 http://ftp.de.debian.org/debian/ unstable/main man-db s390 2.5.7-8 [1303 kB]
+Get:2 http://ftp.de.debian.org/debian/ unstable/main groff-base s390 1.21-4 [1158 kB]
+Get:3 http://ftp.de.debian.org/debian/ unstable/main libpipeline1 s390 1.1.0-1 [38.0 kB]
+Get:4 http://ftp.de.debian.org/debian/ unstable/main man-db s390 2.5.9-4 [1015 kB]
Get:5 http://ftp.de.debian.org/debian/ unstable/main libmagic1 s390 5.04-5 [243 kB]
Get:6 http://ftp.de.debian.org/debian/ unstable/main file s390 5.04-5 [50.0 kB]
Get:7 http://ftp.de.debian.org/debian/ unstable/main gettext-base s390 0.18.1.1-3 [142 kB]
-Get:8 http://ftp.de.debian.org/debian/ unstable/main libxml2 s390 2.7.8.dfsg-2 [873 kB]
-Get:9 http://ftp.de.debian.org/debian/ unstable/main html2text s390 1.3.2a-15 [101 kB]
-Get:10 http://ftp.de.debian.org/debian/ unstable/main libglib2.0-0 s390 2.24.2-1 [1140 kB]
-Get:11 http://ftp.de.debian.org/debian/ unstable/main libcroco3 s390 0.6.2-1 [128 kB]
-Get:12 http://ftp.de.debian.org/debian/ unstable/main libunistring0 s390 0.9.3-3 [431 kB]
-Get:13 http://ftp.de.debian.org/debian/ unstable/main gettext s390 0.18.1.1-3 [2068 kB]
-Get:14 http://ftp.de.debian.org/debian/ unstable/main intltool-debian all 0.35.0+20060710.1 [30.8 kB]
-Get:15 http://ftp.de.debian.org/debian/ unstable/main po-debconf all 1.0.16+nmu1 [223 kB]
-Get:16 http://ftp.de.debian.org/debian/ unstable/main debhelper all 8.1.0 [552 kB]
-Get:17 http://ftp.de.debian.org/debian/ unstable/main cdbs all 0.4.92 [1268 kB]
+Get:8 http://ftp.de.debian.org/debian/ unstable/main libpcre3 s390 8.12-3 [262 kB]
+Get:9 http://ftp.de.debian.org/debian/ unstable/main libxml2 s390 2.7.8.dfsg-2 [873 kB]
+Get:10 http://ftp.de.debian.org/debian/ unstable/main html2text s390 1.3.2a-15 [101 kB]
+Get:11 http://ftp.de.debian.org/debian/ unstable/main libglib2.0-0 s390 2.28.1-1+b1 [1629 kB]
+Get:12 http://ftp.de.debian.org/debian/ unstable/main libcroco3 s390 0.6.2-1 [128 kB]
+Get:13 http://ftp.de.debian.org/debian/ unstable/main libunistring0 s390 0.9.3-3 [431 kB]
+Get:14 http://ftp.de.debian.org/debian/ unstable/main gettext s390 0.18.1.1-3 [2068 kB]
+Get:15 http://ftp.de.debian.org/debian/ unstable/main intltool-debian all 0.35.0+20060710.1 [30.8 kB]
+Get:16 http://ftp.de.debian.org/debian/ unstable/main po-debconf all 1.0.16+nmu1 [223 kB]
+Get:17 http://ftp.de.debian.org/debian/ unstable/main debhelper all 8.1.2 [553 kB]
Get:18 http://ftp.de.debian.org/debian/ unstable/main zlib1g-dev s390 1:1.2.3.4.dfsg-3 [193 kB]
debconf: delaying package configuration, since apt-utils is not installed
-Fetched 10.3 MB in 2s (3566 kB/s)
+Fetched 9346 kB in 2s (3621 kB/s)
Selecting previously deselected package bsdmainutils.
-(Reading database ... 10088 files and directories currently installed.)
+(Reading database ... 10125 files and directories currently installed.)
Unpacking bsdmainutils (from .../bsdmainutils_8.2.2_s390.deb) ...
Selecting previously deselected package groff-base.
-Unpacking groff-base (from .../groff-base_1.20.1-10_s390.deb) ...
+Unpacking groff-base (from .../groff-base_1.21-4_s390.deb) ...
+Selecting previously deselected package libpipeline1.
+Unpacking libpipeline1 (from .../libpipeline1_1.1.0-1_s390.deb) ...
Selecting previously deselected package man-db.
-Unpacking man-db (from .../man-db_2.5.7-8_s390.deb) ...
+Unpacking man-db (from .../man-db_2.5.9-4_s390.deb) ...
Selecting previously deselected package libmagic1.
Unpacking libmagic1 (from .../libmagic1_5.04-5_s390.deb) ...
Selecting previously deselected package file.
@@ -162,13 +162,13 @@ Unpacking file (from .../archives/file_5.04-5_s390.deb) ...
Selecting previously deselected package gettext-base.
Unpacking gettext-base (from .../gettext-base_0.18.1.1-3_s390.deb) ...
Selecting previously deselected package libpcre3.
-Unpacking libpcre3 (from .../libpcre3_8.12-1_s390.deb) ...
+Unpacking libpcre3 (from .../libpcre3_8.12-3_s390.deb) ...
Selecting previously deselected package libxml2.
Unpacking libxml2 (from .../libxml2_2.7.8.dfsg-2_s390.deb) ...
Selecting previously deselected package html2text.
Unpacking html2text (from .../html2text_1.3.2a-15_s390.deb) ...
Selecting previously deselected package libglib2.0-0.
-Unpacking libglib2.0-0 (from .../libglib2.0-0_2.24.2-1_s390.deb) ...
+Unpacking libglib2.0-0 (from .../libglib2.0-0_2.28.1-1+b1_s390.deb) ...
Selecting previously deselected package libcroco3.
Unpacking libcroco3 (from .../libcroco3_0.6.2-1_s390.deb) ...
Selecting previously deselected package libunistring0.
@@ -180,37 +180,36 @@ Unpacking intltool-debian (from .../intltool-debian_0.35.0+20060710.1_all.deb) .
Selecting previously deselected package po-debconf.
Unpacking po-debconf (from .../po-debconf_1.0.16+nmu1_all.deb) ...
Selecting previously deselected package debhelper.
-Unpacking debhelper (from .../debhelper_8.1.0_all.deb) ...
-Selecting previously deselected package cdbs.
-Unpacking cdbs (from .../archives/cdbs_0.4.92_all.deb) ...
+Unpacking debhelper (from .../debhelper_8.1.2_all.deb) ...
Selecting previously deselected package zlib1g-dev.
Unpacking zlib1g-dev (from .../zlib1g-dev_1%3a1.2.3.4.dfsg-3_s390.deb) ...
Setting up bsdmainutils (8.2.2) ...
update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode.
update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode.
-Setting up groff-base (1.20.1-10) ...
-Setting up man-db (2.5.7-8) ...
+Setting up groff-base (1.21-4) ...
+Setting up libpipeline1 (1.1.0-1) ...
+Setting up man-db (2.5.9-4) ...
Building database of manual pages ...
Setting up libmagic1 (5.04-5) ...
Setting up file (5.04-5) ...
Setting up gettext-base (0.18.1.1-3) ...
-Setting up libpcre3 (8.12-1) ...
+Setting up libpcre3 (8.12-3) ...
Setting up libxml2 (2.7.8.dfsg-2) ...
Setting up html2text (1.3.2a-15) ...
-Setting up libglib2.0-0 (2.24.2-1) ...
+Setting up libglib2.0-0 (2.28.1-1+b1) ...
+No schema files found: doing nothing.
Setting up libcroco3 (0.6.2-1) ...
Setting up libunistring0 (0.9.3-3) ...
Setting up gettext (0.18.1.1-3) ...
Setting up intltool-debian (0.35.0+20060710.1) ...
Setting up po-debconf (1.0.16+nmu1) ...
-Setting up debhelper (8.1.0) ...
-Setting up cdbs (0.4.92) ...
+Setting up debhelper (8.1.2) ...
Setting up zlib1g-dev (1:1.2.3.4.dfsg-3) ...
Removing negative dependencies:
Checking correctness of source dependencies...
Kernel: Linux 2.6.32-bpo.5-s390x s390 (s390x)
-Toolchain package versions: libc6-dev_2.11.2-7 dpkg-dev_1.15.8.8 linux-libc-dev_2.6.32-30 gcc-4.4_4.4.5-10 g++-4.4_4.4.5-10 binutils_2.20.1-15 libstdc++6-4.4-dev_4.4.5-10 libstdc++6_4.4.5-10
-Package versions: apt_0.8.10 base-files_6.0 base-passwd_3.5.22 bash_4.1-3 binutils_2.20.1-15 bsdmainutils_8.2.2 bsdutils_1:2.17.2-6 build-essential_11.5 bzip2_1.0.5-6 cdbs_0.4.92 coreutils_8.5-1 cpp_4:4.4.5-2 cpp-4.4_4.4.5-10 dash_0.5.5.1-7.4 debconf_1.5.37 debconf-i18n_1.5.37 debfoster_2.7-1.1 debhelper_8.1.0 debian-archive-keyring_2010.08.28 debianutils_3.4.2 diffutils_1:3.0-1 dpkg_1.15.8.8 dpkg-dev_1.15.8.8 e2fslibs_1.41.12-2 e2fsprogs_1.41.12-2 fakeroot_1.14.5-1 file_5.04-5 findutils_4.4.2-1+b1 g++_4:4.4.5-2 g++-4.4_4.4.5-10 gcc_4:4.4.5-2 gcc-4.4_4.4.5-10 gcc-4.4-base_4.4.5-10 gettext_0.18.1.1-3 gettext-base_0.18.1.1-3 gnupg_1.4.10-4 gpgv_1.4.10-4 grep_2.6.3-3 groff-base_1.20.1-10 gzip_1.3.12-9 hostname_3.05 html2text_1.3.2a-15 initscripts_2.88dsf-13.1 insserv_1.14.0-2 intltool-debian_0.35.0+20060710.1 libacl1_2.2.49-4 libattr1_1:2.4.44-2 libblkid1_2.17.2-6 libbz2-1.0_1.0.5-6 libc-bin_2.11.2-7 libc-dev-bin_2.11.2-7 libc6_2.11.2-7 libc6-dev_2.11.2-7 libcomerr2_1.41.12-2 libcroco3_0.6.2-1 libdb4.7_4.7.25-12 libdb4.8_4.8.30-3 libdpkg-perl_1.15.8.8 libgc1c2_1:6.8-1.2 libgcc1_1:4.4.5-10 libgdbm3_1.8.3-9 libglib2.0-0_2.24.2-1 libgmp3c2_2:4.3.2+dfsg-1 libgomp1_4.4.5-10 liblocale-gettext-perl_1.05-6 liblzma2_5.0.0-2 libmagic1_5.04-5 libmpfr4_3.0.0-2 libncurses5_5.7+20100313-5 libpam-modules_1.1.1-6.1 libpam-runtime_1.1.1-6.1 libpam0g_1.1.1-6.1 libpcre3_8.12-1 libreadline6_6.1-3 libselinux1_2.0.96-1 libsepol1_2.0.42-1 libslang2_2.2.2-4 libss2_1.41.12-2 libstdc++6_4.4.5-10 libstdc++6-4.4-dev_4.4.5-10 libtext-charwidth-perl_0.04-6 libtext-iconv-perl_1.7-2 libtext-wrapi18n-perl_0.06-7 libtimedate-perl_1.2000-1 libunistring0_0.9.3-3 libusb-0.1-4_2:0.1.12-16 libuuid1_2.17.2-6 libxml2_2.7.8.dfsg-2 linux-libc-dev_2.6.32-30 login_1:4.1.4.2+svn3283-2 lsb-base_3.2-26 make_3.81-8 man-db_2.5.7-8 mawk_1.3.3-15 mount_2.17.2-6 ncurses-base_5.7+20100313-5 ncurses-bin_5.7+20100313-5 passwd_1:4.1.4.2+svn3283-2 patch_2.6-3 perl_5.10.1-17 perl-base_5.10.1-17 perl-modules_5.10.1-17 po-debconf_1.0.16+nmu1 readline-common_6.1-3 sed_4.2.1-8 sensible-utils_0.0.6 sudo_1.7.4p4-6 sysv-rc_2.88dsf-13.1 sysvinit_2.88dsf-13.1 sysvinit-utils_2.88dsf-13.1 tar_1.25-3 tzdata_2010o-1 util-linux_2.17.2-6 xz-utils_5.0.0-2 zlib1g_1:1.2.3.4.dfsg-3 zlib1g-dev_1:1.2.3.4.dfsg-3
+Toolchain package versions: libc6-dev_2.11.2-11 dpkg-dev_1.15.8.10 linux-libc-dev_2.6.37-2 gcc-4.4_4.4.5-13 g++-4.4_4.4.5-13 binutils_2.21.0.20110216-2 libstdc++6-4.4-dev_4.4.5-13 libstdc++6_4.5.2-4
+Package versions: apt_0.8.11.5 base-files_6.1 base-passwd_3.5.22 bash_4.1-3 binutils_2.21.0.20110216-2 bsdmainutils_8.2.2 bsdutils_1:2.17.2-9.1 build-essential_11.5 bzip2_1.0.5-6 coreutils_8.5-1 cpp_4:4.4.5-2 cpp-4.4_4.4.5-13 dash_0.5.5.1-7.4 debconf_1.5.38 debconf-i18n_1.5.38 debfoster_2.7-1.1 debhelper_8.1.2 debian-archive-keyring_2010.08.28 debianutils_3.4.4 diffutils_1:3.0-1 dpkg_1.15.8.10 dpkg-dev_1.15.8.10 e2fslibs_1.41.12-2 e2fsprogs_1.41.12-2 fakeroot_1.14.5-2 file_5.04-5 findutils_4.4.2-1+b1 g++_4:4.4.5-2 g++-4.4_4.4.5-13 gcc_4:4.4.5-2 gcc-4.4_4.4.5-13 gcc-4.4-base_4.4.5-13 gcc-4.5-base_4.5.2-4 gettext_0.18.1.1-3 gettext-base_0.18.1.1-3 gnupg_1.4.11-3 gpgv_1.4.11-3 grep_2.6.3-3 groff-base_1.21-4 gzip_1.3.12-9 hostname_3.05 html2text_1.3.2a-15 initscripts_2.88dsf-13.1 insserv_1.14.0-2 intltool-debian_0.35.0+20060710.1 libacl1_2.2.49-4 libattr1_1:2.4.44-2 libblkid1_2.17.2-9.1 libbz2-1.0_1.0.5-6 libc-bin_2.11.2-11 libc-dev-bin_2.11.2-11 libc6_2.11.2-11 libc6-dev_2.11.2-11 libcomerr2_1.41.12-2 libcroco3_0.6.2-1 libdb4.7_4.7.25-12 libdb4.8_4.8.30-5 libdpkg-perl_1.15.8.10 libgc1c2_1:7.1-6 libgcc1_1:4.5.2-4 libgdbm3_1.8.3-9 libglib2.0-0_2.28.1-1+b1 libgmp3c2_2:4.3.2+dfsg-1 libgomp1_4.5.2-4 liblocale-gettext-perl_1.05-6 liblzma2_5.0.0-2 libmagic1_5.04-5 libmpfr4_3.0.0-7 libncurses5_5.7+20100313-5 libpam-modules_1.1.2-2 libpam-runtime_1.1.2-2 libpam0g_1.1.2-2 libpcre3_8.12-3 libpipeline1_1.1.0-1 libreadline6_6.1-3 libselinux1_2.0.96-1 libsepol1_2.0.42-1 libslang2_2.2.2-4 libss2_1.41.12-2 libstdc++6_4.5.2-4 libstdc++6-4.4-dev_4.4.5-13 libtext-charwidth-perl_0.04-6 libtext-iconv-perl_1.7-2 libtext-wrapi18n-perl_0.06-7 libtimedate-perl_1.2000-1 libunistring0_0.9.3-3 libusb-0.1-4_2:0.1.12-17 libuuid1_2.17.2-9.1 libxml2_2.7.8.dfsg-2 linux-libc-dev_2.6.37-2 login_1:4.1.4.2+svn3283-3 lsb-base_3.2-27 make_3.81-8 man-db_2.5.9-4 mawk_1.3.3-15 mount_2.17.2-9.1 ncurses-base_5.7+20100313-5 ncurses-bin_5.7+20100313-5 passwd_1:4.1.4.2+svn3283-3 patch_2.6.1-1 perl_5.10.1-17 perl-base_5.10.1-17 perl-modules_5.10.1-17 po-debconf_1.0.16+nmu1 readline-common_6.1-3 sed_4.2.1-9 sensible-utils_0.0.6 sudo_1.7.4p6-1 sysv-rc_2.88dsf-13.1 sysvinit_2.88dsf-13.1 sysvinit-utils_2.88dsf-13.1 tar_1.25-3 tzdata_2011b-2 util-linux_2.17.2-9.1 xz-utils_5.0.0-2 zlib1g_1:1.2.3.4.dfsg-3 zlib1g-dev_1:1.2.3.4.dfsg-3
┌──────────────────────────────────────────────────────────────────────────────┐
│ Build │
@@ -222,12 +221,12 @@ Unpack source
dpkg-source: warning: -sn is not a valid option for Dpkg::Source::Package::V3::quilt
gpgv: keyblock resource `/home/buildd/.gnupg/trustedkeys.gpg': file open error
-gpgv: Signature made Tue Feb 8 07:20:43 2011 UTC using RSA key ID 2295D502
+gpgv: Signature made Fri Mar 11 21:59:41 2011 UTC using DSA key ID C09FD35A
gpgv: Can't check signature: public key not found
-dpkg-source: warning: failed to verify signature on ./bwa_0.5.9-1.dsc
+dpkg-source: warning: failed to verify signature on ./bwa_0.5.9-2.dsc
dpkg-source: info: extracting bwa in bwa-0.5.9
dpkg-source: info: unpacking bwa_0.5.9.orig.tar.bz2
-dpkg-source: info: unpacking bwa_0.5.9-1.debian.tar.gz
+dpkg-source: info: unpacking bwa_0.5.9-2.debian.tar.gz
Check disc space
────────────────
@@ -242,155 +241,155 @@ dpkg-buildpackage: export CXXFLAGS from dpkg-buildflags (origin: vendor): -g -O2
dpkg-buildpackage: export FFLAGS from dpkg-buildflags (origin: vendor): -g -O2
dpkg-buildpackage: export LDFLAGS from dpkg-buildflags (origin: vendor):
dpkg-buildpackage: source package bwa
-dpkg-buildpackage: source version 0.5.9-1
+dpkg-buildpackage: source version 0.5.9-2
dpkg-source --before-build bwa-0.5.9
dpkg-buildpackage: host architecture s390
/usr/bin/fakeroot debian/rules clean
-test -x debian/rules
-dh_testroot
-rm -f debian/stamp-makefile-build debian/stamp-makefile-install
-/usr/bin/make -C . CFLAGS="-g -O2 -g -O2" CXXFLAGS="-g -O2 -g -O2" CPPFLAGS="" LDFLAGS="" -k clean
-make[1]: Entering directory `/build/buildd-bwa_0.5.9-1-s390-AOoRjJ/bwa-0.5.9'
-make[2]: Entering directory `/build/buildd-bwa_0.5.9-1-s390-AOoRjJ/bwa-0.5.9'
+dh clean
+ dh_testdir
+ dh_auto_clean
+make[1]: Entering directory `/build/buildd-bwa_0.5.9-2-s390-1n28HK/bwa-0.5.9'
+make[2]: Entering directory `/build/buildd-bwa_0.5.9-2-s390-1n28HK/bwa-0.5.9'
rm -f gmon.out *.o a.out bwa *~ *.a
-make[2]: Leaving directory `/build/buildd-bwa_0.5.9-1-s390-AOoRjJ/bwa-0.5.9'
-make[2]: Entering directory `/build/buildd-bwa_0.5.9-1-s390-AOoRjJ/bwa-0.5.9/bwt_gen'
+make[2]: Leaving directory `/build/buildd-bwa_0.5.9-2-s390-1n28HK/bwa-0.5.9'
+make[2]: Entering directory `/build/buildd-bwa_0.5.9-2-s390-1n28HK/bwa-0.5.9/bwt_gen'
rm -f gmon.out *.o a.out *~ *.a
-make[2]: Leaving directory `/build/buildd-bwa_0.5.9-1-s390-AOoRjJ/bwa-0.5.9/bwt_gen'
-make[1]: Leaving directory `/build/buildd-bwa_0.5.9-1-s390-AOoRjJ/bwa-0.5.9'
-dh_clean
+make[2]: Leaving directory `/build/buildd-bwa_0.5.9-2-s390-1n28HK/bwa-0.5.9/bwt_gen'
+make[1]: Leaving directory `/build/buildd-bwa_0.5.9-2-s390-1n28HK/bwa-0.5.9'
+ dh_clean
debian/rules build
-test -x debian/rules
-mkdir -p "."
-/usr/bin/make -C . CFLAGS="-g -O2 -g -O2" CXXFLAGS="-g -O2 -g -O2" CPPFLAGS="" LDFLAGS=""
-make[1]: Entering directory `/build/buildd-bwa_0.5.9-1-s390-AOoRjJ/bwa-0.5.9'
-make[2]: Entering directory `/build/buildd-bwa_0.5.9-1-s390-AOoRjJ/bwa-0.5.9'
+dh build
+ dh_testdir
+ dh_auto_configure
+ dh_auto_build
+make[1]: Entering directory `/build/buildd-bwa_0.5.9-2-s390-1n28HK/bwa-0.5.9'
+make[2]: Entering directory `/build/buildd-bwa_0.5.9-2-s390-1n28HK/bwa-0.5.9'
make[2]: Nothing to be done for `lib'.
-make[2]: Leaving directory `/build/buildd-bwa_0.5.9-1-s390-AOoRjJ/bwa-0.5.9'
-make[2]: Entering directory `/build/buildd-bwa_0.5.9-1-s390-AOoRjJ/bwa-0.5.9/bwt_gen'
-gcc -c -g -O2 -g -O2 -DHAVE_PTHREAD bwt_gen.c -o bwt_gen.o
-gcc -c -g -O2 -g -O2 -DHAVE_PTHREAD QSufSort.c -o QSufSort.o
+make[2]: Leaving directory `/build/buildd-bwa_0.5.9-2-s390-1n28HK/bwa-0.5.9'
+make[2]: Entering directory `/build/buildd-bwa_0.5.9-2-s390-1n28HK/bwa-0.5.9/bwt_gen'
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD bwt_gen.c -o bwt_gen.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD QSufSort.c -o QSufSort.o
ar -cru libbwtgen.a bwt_gen.o QSufSort.o
-make[2]: Leaving directory `/build/buildd-bwa_0.5.9-1-s390-AOoRjJ/bwa-0.5.9/bwt_gen'
-gcc -c -g -O2 -g -O2 -DHAVE_PTHREAD utils.c -o utils.o
-gcc -c -g -O2 -g -O2 -DHAVE_PTHREAD bwt.c -o bwt.o
-gcc -c -g -O2 -g -O2 -DHAVE_PTHREAD bwtio.c -o bwtio.o
-gcc -c -g -O2 -g -O2 -DHAVE_PTHREAD bwtaln.c -o bwtaln.o
-gcc -c -g -O2 -g -O2 -DHAVE_PTHREAD bwtgap.c -o bwtgap.o
-gcc -c -g -O2 -g -O2 -DHAVE_PTHREAD is.c -o is.o
-gcc -c -g -O2 -g -O2 -DHAVE_PTHREAD bntseq.c -o bntseq.o
-gcc -c -g -O2 -g -O2 -DHAVE_PTHREAD bwtmisc.c -o bwtmisc.o
-gcc -c -g -O2 -g -O2 -DHAVE_PTHREAD bwtindex.c -o bwtindex.o
-gcc -c -g -O2 -g -O2 -DHAVE_PTHREAD stdaln.c -o stdaln.o
-gcc -c -g -O2 -g -O2 -DHAVE_PTHREAD simple_dp.c -o simple_dp.o
-gcc -c -g -O2 -g -O2 -DHAVE_PTHREAD bwaseqio.c -o bwaseqio.o
-gcc -c -g -O2 -g -O2 -DHAVE_PTHREAD bwase.c -o bwase.o
-gcc -c -g -O2 -g -O2 -DHAVE_PTHREAD bwape.c -o bwape.o
-gcc -c -g -O2 -g -O2 -DHAVE_PTHREAD kstring.c -o kstring.o
-gcc -c -g -O2 -g -O2 -DHAVE_PTHREAD cs2nt.c -o cs2nt.o
-gcc -c -g -O2 -g -O2 -DHAVE_PTHREAD bwtsw2_core.c -o bwtsw2_core.o
-gcc -c -g -O2 -g -O2 -DHAVE_PTHREAD bwtsw2_main.c -o bwtsw2_main.o
-gcc -c -g -O2 -g -O2 -DHAVE_PTHREAD bwtsw2_aux.c -o bwtsw2_aux.o
-gcc -c -g -O2 -g -O2 -DHAVE_PTHREAD bwt_lite.c -o bwt_lite.o
-gcc -c -g -O2 -g -O2 -DHAVE_PTHREAD bwtsw2_chain.c -o bwtsw2_chain.o
-gcc -c -g -O2 -g -O2 -DHAVE_PTHREAD bamlite.c -o bamlite.o
-gcc -c -g -O2 -g -O2 -DHAVE_PTHREAD main.c -o main.o
-gcc -g -O2 -g -O2 -DHAVE_PTHREAD utils.o bwt.o bwtio.o bwtaln.o bwtgap.o is.o bntseq.o bwtmisc.o bwtindex.o stdaln.o simple_dp.o bwaseqio.o bwase.o bwape.o kstring.o cs2nt.o bwtsw2_core.o bwtsw2_main.o bwtsw2_aux.o bwt_lite.o bwtsw2_chain.o bamlite.o main.o -o bwa -lm -lz -lpthread -Lbwt_gen -lbwtgen
-make[1]: Leaving directory `/build/buildd-bwa_0.5.9-1-s390-AOoRjJ/bwa-0.5.9'
-touch debian/stamp-makefile-build
-DEB_MAKE_CHECK_TARGET unset, not running checks
+make[2]: Leaving directory `/build/buildd-bwa_0.5.9-2-s390-1n28HK/bwa-0.5.9/bwt_gen'
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD utils.c -o utils.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD bwt.c -o bwt.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD bwtio.c -o bwtio.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD bwtaln.c -o bwtaln.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD bwtgap.c -o bwtgap.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD is.c -o is.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD bntseq.c -o bntseq.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD bwtmisc.c -o bwtmisc.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD bwtindex.c -o bwtindex.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD stdaln.c -o stdaln.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD simple_dp.c -o simple_dp.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD bwaseqio.c -o bwaseqio.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD bwase.c -o bwase.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD bwape.c -o bwape.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD kstring.c -o kstring.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD cs2nt.c -o cs2nt.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD bwtsw2_core.c -o bwtsw2_core.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD bwtsw2_main.c -o bwtsw2_main.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD bwtsw2_aux.c -o bwtsw2_aux.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD bwt_lite.c -o bwt_lite.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD bwtsw2_chain.c -o bwtsw2_chain.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD bamlite.c -o bamlite.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD main.c -o main.o
+gcc -g -Wall -O2 -DHAVE_PTHREAD utils.o bwt.o bwtio.o bwtaln.o bwtgap.o is.o bntseq.o bwtmisc.o bwtindex.o stdaln.o simple_dp.o bwaseqio.o bwase.o bwape.o kstring.o cs2nt.o bwtsw2_core.o bwtsw2_main.o bwtsw2_aux.o bwt_lite.o bwtsw2_chain.o bamlite.o main.o -o bwa -lm -lz -lpthread -Lbwt_gen -lbwtgen
+make[1]: Leaving directory `/build/buildd-bwa_0.5.9-2-s390-1n28HK/bwa-0.5.9'
+ dh_auto_test
/usr/bin/fakeroot debian/rules binary-arch
-test -x debian/rules
-dh_testroot
-dh_prep
-dh_installdirs -A
-mkdir -p "."
-DEB_MAKE_CHECK_TARGET unset, not running checks
-DEB_MAKE_INSTALL_TARGET unset, skipping default makefile.mk common-install target
-Adding cdbs dependencies to debian/bwa.substvars
-dh_installdirs -pbwa
-dh_installdocs -pbwa ./README ./NEWS
-dh_installexamples -pbwa
-dh_installman -pbwa
-dh_installinfo -pbwa
-dh_installmenu -pbwa
-dh_installcron -pbwa
-dh_installinit -pbwa
-dh_installdebconf -pbwa
-dh_installemacsen -pbwa
-dh_installcatalogs -pbwa
-dh_installpam -pbwa
-dh_installlogrotate -pbwa
-dh_installlogcheck -pbwa
-dh_installchangelogs -pbwa ./ChangeLog
-dh_installudev -pbwa
-dh_lintian -pbwa
-dh_bugfiles -pbwa
-dh_install -pbwa
-dh_link -pbwa
-dh_installmime -pbwa
-dh_strip -pbwa
-dh_compress -pbwa
-dh_fixperms -pbwa
-dh_makeshlibs -pbwa
-dh_installdeb -pbwa
-dh_perl -pbwa
-dh_shlibdeps -pbwa
-dh_gencontrol -pbwa
+dh binary-arch
+ dh_testroot -a
+ dh_prep -a
+ dh_installdirs -a
+ dh_auto_install -a
+ dh_install -a
+ dh_installdocs -a
+ dh_installchangelogs -a
+ dh_installexamples -a
+ dh_installman -a
+ dh_installcatalogs -a
+ dh_installcron -a
+ dh_installdebconf -a
+ dh_installemacsen -a
+ dh_installifupdown -a
+ dh_installinfo -a
+ dh_installinit -a
+ dh_installmenu -a
+ dh_installmime -a
+ dh_installmodules -a
+ dh_installlogcheck -a
+ dh_installlogrotate -a
+ dh_installpam -a
+ dh_installppp -a
+ dh_installudev -a
+ dh_installwm -a
+ dh_installxfonts -a
+ dh_bugfiles -a
+ dh_lintian -a
+ dh_gconf -a
+ dh_icons -a
+ dh_perl -a
+ dh_usrlocal -a
+ dh_link -a
+ dh_compress -a
+ dh_fixperms -a
+ dh_strip -a
+ dh_makeshlibs -a
+ dh_shlibdeps -a
+ dh_installdeb -a
+ dh_gencontrol -a
dpkg-gencontrol: warning: package bwa: unused substitution variable ${perl:Depends}
-dh_md5sums -pbwa
-dh_builddeb -pbwa
-dpkg-deb: building package `bwa' in `../bwa_0.5.9-1_s390.deb'.
- dpkg-genchanges -B -ms390 Build Daemon (zandonai) <buildd_s390-zandonai at buildd.debian.org> >../bwa_0.5.9-1_s390.changes
+ dh_md5sums -a
+ dh_builddeb -a
+dpkg-deb: building package `bwa' in `../bwa_0.5.9-2_s390.deb'.
+ dpkg-genchanges -B -ms390 Build Daemon (zandonai) <buildd_s390-zandonai at buildd.debian.org> >../bwa_0.5.9-2_s390.changes
dpkg-genchanges: arch-specific upload - not including arch-independent packages
dpkg-genchanges: binary-only upload - not including any source code
dpkg-source --after-build bwa-0.5.9
dpkg-buildpackage: binary only upload (no source included)
────────────────────────────────────────────────────────────────────────────────
-Build finished at 20110208-2035
+Build finished at 20110312-0741
-bwa_0.5.9-1_s390.changes:
+bwa_0.5.9-2_s390.changes:
Format: 1.8
-Date: Tue, 08 Feb 2011 16:11:12 +0900
+Date: Fri, 11 Mar 2011 22:49:07 +0100
Source: bwa
Binary: bwa
Architecture: s390
-Version: 0.5.9-1
+Version: 0.5.9-2
Distribution: sid
Urgency: low
Maintainer: s390 Build Daemon (zandonai) <buildd_s390-zandonai at buildd.debian.org>
-Changed-By: Charles Plessy <plessy at debian.org>
+Changed-By: Andreas Tille <tille at debian.org>
Description:
bwa - Burrows-Wheeler Aligner
Changes:
- bwa (0.5.9-1) unstable; urgency=low
+ bwa (0.5.9-2) unstable; urgency=low
.
- * New usptream release
- - Upstream moved to GitHub (debian/upstream-metadata.yaml).
- - Checked copyright; one file was removed (debian/copyright).
- * Migrated the Debian source package to Git (debian/control).
- * Use Debhelper 8 (debian/control, debian/compat).
+ * Watchfile should not regard rc releases.
+ * Drop cdbs in favour of dh
Checksums-Sha1:
- c03fba6d8c793d60d9f4e0eceb2a01d0f0e80761 140496 bwa_0.5.9-1_s390.deb
+ 2c83f77f687216c296e4f76215cdc7e5f7b1c4f3 140604 bwa_0.5.9-2_s390.deb
Checksums-Sha256:
- b27632cfa4225def55144e0794e00d6fb629ccb6a64270d1a5880ec75d0c2b67 140496 bwa_0.5.9-1_s390.deb
+ ecd58a0b77868fc2aab02c2124f227681ac7b952a024323528a4d89986c48c1f 140604 bwa_0.5.9-2_s390.deb
Files:
- 96353fc0d7cbc1973f6adbc429d6c999 140496 science optional bwa_0.5.9-1_s390.deb
+ 238ea265f79d3502be7f2eb53151ef0a 140604 science optional bwa_0.5.9-2_s390.deb
┌──────────────────────────────────────────────────────────────────────────────┐
│ Package contents │
└──────────────────────────────────────────────────────────────────────────────┘
-bwa_0.5.9-1_s390.deb
+bwa_0.5.9-2_s390.deb
────────────────────
new debian package, version 2.0.
- size 140496 bytes: control archive= 974 bytes.
+ size 140604 bytes: control archive= 973 bytes.
773 bytes, 17 lines control
615 bytes, 10 lines md5sums
Package: bwa
- Version: 0.5.9-1
+ Version: 0.5.9-2
Architecture: s390
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
Installed-Size: 324
@@ -407,24 +406,24 @@ bwa_0.5.9-1_s390.deb
to around 100 kbp. Both algorithms do gapped alignment. They are usually more
accurate and faster on queries with low error rates.
-drwxr-xr-x root/root 0 2011-02-08 20:35 ./
-drwxr-xr-x root/root 0 2011-02-08 20:35 ./usr/
-drwxr-xr-x root/root 0 2011-02-08 20:35 ./usr/bin/
--rwxr-xr-x root/root 206392 2011-02-08 20:35 ./usr/bin/bwa
-drwxr-xr-x root/root 0 2011-02-08 20:35 ./usr/share/
-drwxr-xr-x root/root 0 2011-02-08 20:35 ./usr/share/bwa/
+drwxr-xr-x root/root 0 2011-03-12 07:41 ./
+drwxr-xr-x root/root 0 2011-03-12 07:41 ./usr/
+drwxr-xr-x root/root 0 2011-03-12 07:41 ./usr/bin/
+-rwxr-xr-x root/root 206392 2011-03-12 07:41 ./usr/bin/bwa
+drwxr-xr-x root/root 0 2011-03-12 07:41 ./usr/share/
+drwxr-xr-x root/root 0 2011-03-12 07:41 ./usr/share/bwa/
-rwxr-xr-x root/root 3176 2011-01-25 00:00 ./usr/share/bwa/solid2fastq.pl
-rwxr-xr-x root/root 616 2011-01-25 00:00 ./usr/share/bwa/qualfa2fq.pl
-drwxr-xr-x root/root 0 2011-02-08 20:35 ./usr/share/man/
-drwxr-xr-x root/root 0 2011-02-08 20:35 ./usr/share/man/man1/
--rw-r--r-- root/root 7554 2011-02-08 20:35 ./usr/share/man/man1/bwa.1.gz
-drwxr-xr-x root/root 0 2011-02-08 20:35 ./usr/share/doc/
-drwxr-xr-x root/root 0 2011-02-08 20:35 ./usr/share/doc/bwa/
+drwxr-xr-x root/root 0 2011-03-12 07:41 ./usr/share/man/
+drwxr-xr-x root/root 0 2011-03-12 07:41 ./usr/share/man/man1/
+-rw-r--r-- root/root 7554 2011-03-12 07:41 ./usr/share/man/man1/bwa.1.gz
+drwxr-xr-x root/root 0 2011-03-12 07:41 ./usr/share/doc/
+drwxr-xr-x root/root 0 2011-03-12 07:41 ./usr/share/doc/bwa/
-rw-r--r-- root/root 5857 2011-01-25 00:00 ./usr/share/doc/bwa/NEWS.gz
-rw-r--r-- root/root 17912 2011-01-25 00:00 ./usr/share/doc/bwa/ChangeLog.gz
-rw-r--r-- root/root 634 2011-01-25 00:00 ./usr/share/doc/bwa/README
-rw-r--r-- root/root 17912 2011-01-25 00:00 ./usr/share/doc/bwa/changelog.gz
--rw-r--r-- root/root 881 2011-02-08 07:11 ./usr/share/doc/bwa/changelog.Debian.gz
+-rw-r--r-- root/root 957 2011-03-11 21:54 ./usr/share/doc/bwa/changelog.Debian.gz
-rw-r--r-- root/root 2676 2011-02-08 07:09 ./usr/share/doc/bwa/copyright
@@ -434,9 +433,9 @@ drwxr-xr-x root/root 0 2011-02-08 20:35 ./usr/share/doc/bwa/
Built successfully
────────────────────────────────────────────────────────────────────────────────
-Purging /var/lib/schroot/mount/sid-s390-sbuild-7b7874c9-18b1-486f-8396-68c0f241110c/build/buildd-bwa_0.5.9-1-s390-AOoRjJ
+Purging /var/lib/schroot/mount/sid-s390-sbuild-6d03f0a3-1e13-41ae-8975-2021916e11a4/build/buildd-bwa_0.5.9-2-s390-1n28HK
Not removing build depends: cloned chroot in use
────────────────────────────────────────────────────────────────────────────────
-Finished at 20110208-2035
-Build needed 00:01:07, 2620k disc space
+Finished at 20110312-0741
+Build needed 00:00:58, 2624k disc space
diff --git a/sparc.log b/sparc.log
index 07fb4ef..f8ec8f6 100644
--- a/sparc.log
+++ b/sparc.log
@@ -1,4 +1,4 @@
-From buildd at lebrun.debian.org Tue Feb 08 13:59:52 2011
+From buildd at lebrun.debian.org Sat Mar 12 08:39:32 2011
Return-path: <buildd at lebrun.debian.org>
Received: from merikanto.debian.org ([2001:858:2:2:216:35ff:fec4:a49a])
from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
@@ -6,56 +6,63 @@ Received: from merikanto.debian.org ([2001:858:2:2:216:35ff:fec4:a49a])
EMAIL=hostmaster at merikanto.debian.org (verified)
by grieg.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
(Exim 4.69) (envelope-from <buildd at lebrun.debian.org>)
- id 1Pmo6i-0002z6-6s
- for logs at buildd.debian.org; Tue, 08 Feb 2011 13:59:52 +0000
+ id 1PyKMG-0001dm-0v
+ for logs at buildd.debian.org; Sat, 12 Mar 2011 08:39:32 +0000
Received: from lebrun.debian.org ([193.198.184.10])
from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
CN=lebrun.debian.org, EMAIL=hostmaster at lebrun.debian.org (verified)
by merikanto.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
(Exim 4.69) (envelope-from <buildd at lebrun.debian.org>)
- id 1Pmo6g-000216-Ug; Tue, 08 Feb 2011 13:59:51 +0000
+ id 1PyKMC-0001Pz-AV
+ for logs at buildd.debian.org; Sat, 12 Mar 2011 08:39:29 +0000
Received: from buildd by lebrun.debian.org with local (Exim 4.69)
(envelope-from <buildd at lebrun.debian.org>)
- id 1Pmo6f-0008S2-Kn; Tue, 08 Feb 2011 13:59:49 +0000
+ id 1PyKMB-0003Mf-B6; Sat, 12 Mar 2011 08:39:27 +0000
From: buildd on lebrun <buildd at lebrun.debian.org>
-To: logs at buildd.debian.org,kibi at debian-ports.org
-Subject: Log for successful build of bwa_0.5.9-1 on sparc (dist=sid)
+To: logs at buildd.debian.org,buildd-admin at lebrun.debian.org
+Subject: Log for successful build of bwa_0.5.9-2 on sparc (dist=sid)
Content-Type: text/plain; charset=UTF-8
Content-Transfer-Encoding: 8bit
-Message-Id: <E1Pmo6f-0008S2-Kn at lebrun.debian.org>
-Date: Tue, 08 Feb 2011 13:59:49 +0000
+Message-Id: <E1PyKMB-0003Mf-B6 at lebrun.debian.org>
+Date: Sat, 12 Mar 2011 08:39:27 +0000
Delivered-To: logs at buildd.debian.org
-sbuild (Debian sbuild) 0.60.0 (23 Feb 2010) on lebrun.debian.org
+sbuild (Debian sbuild) 0.60.5 (14 Nov 2010) on lebrun.debian.org
╔══════════════════════════════════════════════════════════════════════════════╗
-║ bwa 0.5.9-1 (sparc) 08 Feb 2011 13:56 ║
+║ bwa 0.5.9-2 (sparc) 12 Mar 2011 08:36 ║
╚══════════════════════════════════════════════════════════════════════════════╝
Package: bwa
-Version: 0.5.9-1
+Version: 0.5.9-2
Architecture: sparc
-Chroot Build Dir: /var/lib/schroot/mount/sid-sparc-sbuild-a20e677c-6f45-4c18-a629-3b02c202a5c8/build/buildd-bwa_0.5.9-1-sparc-nsEeFI
-Start Time: 20110208-1356
-Get:1 http://debian.carnet.hr unstable Release.gpg [835B]
-Get:2 http://incoming.debian.org unstable Release.gpg [835B]
-Get:3 http://incoming.debian.org Release.gpg [835B]
-Get:4 http://incoming.debian.org unstable Release [104kB]
-Get:5 http://debian.carnet.hr unstable Release [104kB]
-Get:6 http://debian.carnet.hr unstable/main Packages [6837kB]
-Get:7 http://incoming.debian.org Release [1604B]
-Get:8 http://incoming.debian.org unstable/main Packages [6837kB]
-Get:9 http://debian.carnet.hr unstable/contrib Packages [50.5kB]
-Get:10 http://debian.carnet.hr unstable/main Sources [4119kB]
-Get:11 http://debian.carnet.hr unstable/contrib Sources [38.6kB]
-Get:12 http://debian.carnet.hr unstable/non-free Sources [83.8kB]
-Get:13 http://incoming.debian.org unstable/contrib Packages [50.5kB]
-Get:14 http://incoming.debian.org unstable/main Sources [4119kB]
-Get:15 http://incoming.debian.org unstable/contrib Sources [38.6kB]
-Get:16 http://incoming.debian.org unstable/non-free Sources [83.8kB]
-Get:17 http://incoming.debian.org Packages [743kB]
-Get:18 http://incoming.debian.org Sources [49.9kB]
-Fetched 23.3MB in 25s (920kB/s)
+Chroot Build Dir: /var/lib/schroot/mount/sid-sparc-sbuild-efe7e6ae-cf48-40bd-b789-1fc0f159c3ed/build/buildd-bwa_0.5.9-2-sparc-0heD8g
+Start Time: 20110312-0836
+Get:1 http://debian.carnet.hr unstable InRelease [147 kB]
+Get:2 http://incoming.debian.org unstable InRelease [147 kB]
+Get:3 http://debian.carnet.hr unstable/main Sources [4196 kB]
+Get:4 http://debian.carnet.hr unstable/contrib Sources [38.7 kB]
+Ign http://incoming.debian.org InRelease
+Get:5 http://incoming.debian.org Release.gpg [835 B]
+Get:6 http://incoming.debian.org unstable/main Sources [4193 kB]
+Get:7 http://debian.carnet.hr unstable/non-free Sources [81.8 kB]
+Get:8 http://debian.carnet.hr unstable/main sparc Packages [6869 kB]
+Get:9 http://debian.carnet.hr unstable/contrib sparc Packages [51.6 kB]
+Ign http://debian.carnet.hr unstable/contrib TranslationIndex
+Get:10 http://debian.carnet.hr unstable/main TranslationIndex [2232 B]
+Get:11 http://incoming.debian.org unstable/contrib Sources [38.7 kB]
+Get:12 http://incoming.debian.org unstable/non-free Sources [81.8 kB]
+Get:13 http://incoming.debian.org unstable/main sparc Packages [6870 kB]
+Ign http://debian.carnet.hr unstable/contrib Translation-en
+Get:14 http://incoming.debian.org unstable/contrib sparc Packages [51.6 kB]
+Ign http://incoming.debian.org unstable/contrib TranslationIndex
+Get:15 http://incoming.debian.org unstable/main TranslationIndex [2232 B]
+Get:16 http://incoming.debian.org Release [1604 B]
+Get:17 http://incoming.debian.org Sources [36.1 kB]
+Get:18 http://incoming.debian.org Packages [486 kB]
+Ign http://incoming.debian.org unstable/contrib Translation-en
+Ign http://incoming.debian.org Translation-en
+Fetched 23.3 MB in 24s (946 kB/s)
Reading package lists...
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -74,30 +81,31 @@ Download source files with APT
Reading package lists...
Building dependency tree...
Reading state information...
-Need to get 119kB of source archives.
-Get:1 http://incoming.debian.org bwa 0.5.9-1 (dsc) [1894B]
-Get:2 http://incoming.debian.org bwa 0.5.9-1 (tar) [114kB]
-Get:3 http://incoming.debian.org bwa 0.5.9-1 (diff) [3651B]
-Fetched 119kB in 0s (138kB/s)
+NOTICE: 'bwa' packaging is maintained in the 'Git' version control system at:
+git://git.debian.org/git/debian-med/bwa.git
+Need to get 119 kB of source archives.
+Get:1 http://incoming.debian.org/buildd-unstable/ bwa 0.5.9-2 (dsc) [1245 B]
+Get:2 http://incoming.debian.org/buildd-unstable/ bwa 0.5.9-2 (tar) [114 kB]
+Get:3 http://incoming.debian.org/buildd-unstable/ bwa 0.5.9-2 (diff) [3828 B]
+Fetched 119 kB in 0s (122 kB/s)
Download complete and in download only mode
Check arch
──────────
** Using build dependencies supplied by package:
-Build-Depends: cdbs, debhelper (>= 8), zlib1g-dev
+Build-Depends: debhelper (>= 8), zlib1g-dev
┌──────────────────────────────────────────────────────────────────────────────┐
│ Install build dependencies (internal resolver) │
└──────────────────────────────────────────────────────────────────────────────┘
Checking for already installed source dependencies...
-cdbs: missing
debhelper: missing
-Using default version 8.1.0
+Using default version 8.1.2
zlib1g-dev: missing
Checking for source dependency conflicts...
-Installing positive dependencies: cdbs debhelper zlib1g-dev
+Installing positive dependencies: debhelper zlib1g-dev
Reading package lists...
Building dependency tree...
Reading state information...
@@ -106,41 +114,40 @@ The following extra packages will be installed:
libcroco3 libglib2.0-0 libmagic1 libpcre3 libpipeline1 libunistring0 libxml2
man-db po-debconf
Suggested packages:
- wamerican wordlist whois vacation devscripts doc-base dh-make gettext-doc
- groff less www-browser libmail-box-perl
+ wamerican wordlist whois vacation dh-make gettext-doc groff less www-browser
+ libmail-box-perl
Recommended packages:
- autotools-dev curl wget lynx-cur autopoint libglib2.0-data shared-mime-info
- xml-core libmail-sendmail-perl
+ curl wget lynx-cur autopoint libglib2.0-data shared-mime-info xml-core
+ libmail-sendmail-perl
The following NEW packages will be installed:
- bsdmainutils cdbs debhelper file gettext gettext-base groff-base html2text
+ bsdmainutils debhelper file gettext gettext-base groff-base html2text
intltool-debian libcroco3 libglib2.0-0 libmagic1 libpcre3 libpipeline1
libunistring0 libxml2 man-db po-debconf zlib1g-dev
-0 upgraded, 19 newly installed, 0 to remove and 77 not upgraded.
-Need to get 9922kB of archives.
-After this operation, 28.6MB of additional disk space will be used.
-Get:1 http://debian.carnet.hr unstable/main bsdmainutils 8.2.2 [205kB]
-Get:2 http://incoming.debian.org groff-base 1.21-4 [1155kB]
-Get:3 http://debian.carnet.hr unstable/main libpipeline1 1.1.0-1 [35.0kB]
-Get:4 http://debian.carnet.hr unstable/main libmagic1 5.04-5 [239kB]
-Get:5 http://debian.carnet.hr unstable/main file 5.04-5 [49.5kB]
-Get:6 http://debian.carnet.hr unstable/main gettext-base 0.18.1.1-3 [140kB]
-Get:7 http://debian.carnet.hr unstable/main libpcre3 8.12-1 [265kB]
-Get:8 http://incoming.debian.org man-db 2.5.9-4 [1007kB]
-Get:9 http://incoming.debian.org cdbs 0.4.92 [1268kB]
-Get:10 http://debian.carnet.hr unstable/main libxml2 2.7.8.dfsg-2 [840kB]
-Get:11 http://debian.carnet.hr unstable/main html2text 1.3.2a-15 [100kB]
-Get:12 http://debian.carnet.hr unstable/main libglib2.0-0 2.24.2-1 [1074kB]
-Get:13 http://debian.carnet.hr unstable/main libcroco3 0.6.2-1 [119kB]
-Get:14 http://debian.carnet.hr unstable/main libunistring0 0.9.3-3 [424kB]
-Get:15 http://debian.carnet.hr unstable/main gettext 0.18.1.1-3 [2006kB]
-Get:16 http://debian.carnet.hr unstable/main intltool-debian 0.35.0+20060710.1 [30.8kB]
-Get:17 http://debian.carnet.hr unstable/main po-debconf 1.0.16+nmu1 [223kB]
-Get:18 http://debian.carnet.hr unstable/main debhelper 8.1.0 [552kB]
-Get:19 http://debian.carnet.hr unstable/main zlib1g-dev 1:1.2.3.4.dfsg-3 [189kB]
+0 upgraded, 18 newly installed, 0 to remove and 12 not upgraded.
+Need to get 9127 kB of archives.
+After this operation, 27.8 MB of additional disk space will be used.
+Get:1 http://debian.carnet.hr/debian/ unstable/main bsdmainutils sparc 8.2.2 [205 kB]
+Get:2 http://debian.carnet.hr/debian/ unstable/main groff-base sparc 1.21-4 [1155 kB]
+Get:3 http://debian.carnet.hr/debian/ unstable/main libpipeline1 sparc 1.1.0-1 [35.0 kB]
+Get:4 http://debian.carnet.hr/debian/ unstable/main man-db sparc 2.5.9-4 [1007 kB]
+Get:5 http://debian.carnet.hr/debian/ unstable/main libmagic1 sparc 5.04-5 [239 kB]
+Get:6 http://debian.carnet.hr/debian/ unstable/main file sparc 5.04-5 [49.5 kB]
+Get:7 http://debian.carnet.hr/debian/ unstable/main gettext-base sparc 0.18.1.1-3 [140 kB]
+Get:8 http://debian.carnet.hr/debian/ unstable/main libpcre3 sparc 8.12-3 [265 kB]
+Get:9 http://debian.carnet.hr/debian/ unstable/main libxml2 sparc 2.7.8.dfsg-2 [840 kB]
+Get:10 http://debian.carnet.hr/debian/ unstable/main html2text sparc 1.3.2a-15 [100 kB]
+Get:11 http://debian.carnet.hr/debian/ unstable/main libglib2.0-0 sparc 2.28.1-1+b1 [1546 kB]
+Get:12 http://debian.carnet.hr/debian/ unstable/main libcroco3 sparc 0.6.2-1 [119 kB]
+Get:13 http://debian.carnet.hr/debian/ unstable/main libunistring0 sparc 0.9.3-3 [424 kB]
+Get:14 http://debian.carnet.hr/debian/ unstable/main gettext sparc 0.18.1.1-3 [2006 kB]
+Get:15 http://debian.carnet.hr/debian/ unstable/main intltool-debian all 0.35.0+20060710.1 [30.8 kB]
+Get:16 http://debian.carnet.hr/debian/ unstable/main po-debconf all 1.0.16+nmu1 [223 kB]
+Get:17 http://debian.carnet.hr/debian/ unstable/main debhelper all 8.1.2 [553 kB]
+Get:18 http://debian.carnet.hr/debian/ unstable/main zlib1g-dev sparc 1:1.2.3.4.dfsg-3 [189 kB]
debconf: delaying package configuration, since apt-utils is not installed
-Fetched 9922kB in 6s (1570kB/s)
+Fetched 9127 kB in 7s (1267 kB/s)
Selecting previously deselected package bsdmainutils.
-(Reading database ... 10174 files and directories currently installed.)
+(Reading database ... 10479 files and directories currently installed.)
Unpacking bsdmainutils (from .../bsdmainutils_8.2.2_sparc.deb) ...
Selecting previously deselected package groff-base.
Unpacking groff-base (from .../groff-base_1.21-4_sparc.deb) ...
@@ -155,13 +162,13 @@ Unpacking file (from .../archives/file_5.04-5_sparc.deb) ...
Selecting previously deselected package gettext-base.
Unpacking gettext-base (from .../gettext-base_0.18.1.1-3_sparc.deb) ...
Selecting previously deselected package libpcre3.
-Unpacking libpcre3 (from .../libpcre3_8.12-1_sparc.deb) ...
+Unpacking libpcre3 (from .../libpcre3_8.12-3_sparc.deb) ...
Selecting previously deselected package libxml2.
Unpacking libxml2 (from .../libxml2_2.7.8.dfsg-2_sparc.deb) ...
Selecting previously deselected package html2text.
Unpacking html2text (from .../html2text_1.3.2a-15_sparc.deb) ...
Selecting previously deselected package libglib2.0-0.
-Unpacking libglib2.0-0 (from .../libglib2.0-0_2.24.2-1_sparc.deb) ...
+Unpacking libglib2.0-0 (from .../libglib2.0-0_2.28.1-1+b1_sparc.deb) ...
Selecting previously deselected package libcroco3.
Unpacking libcroco3 (from .../libcroco3_0.6.2-1_sparc.deb) ...
Selecting previously deselected package libunistring0.
@@ -173,9 +180,7 @@ Unpacking intltool-debian (from .../intltool-debian_0.35.0+20060710.1_all.deb) .
Selecting previously deselected package po-debconf.
Unpacking po-debconf (from .../po-debconf_1.0.16+nmu1_all.deb) ...
Selecting previously deselected package debhelper.
-Unpacking debhelper (from .../debhelper_8.1.0_all.deb) ...
-Selecting previously deselected package cdbs.
-Unpacking cdbs (from .../archives/cdbs_0.4.92_all.deb) ...
+Unpacking debhelper (from .../debhelper_8.1.2_all.deb) ...
Selecting previously deselected package zlib1g-dev.
Unpacking zlib1g-dev (from .../zlib1g-dev_1%3a1.2.3.4.dfsg-3_sparc.deb) ...
Setting up bsdmainutils (8.2.2) ...
@@ -188,23 +193,23 @@ Building database of manual pages ...
Setting up libmagic1 (5.04-5) ...
Setting up file (5.04-5) ...
Setting up gettext-base (0.18.1.1-3) ...
-Setting up libpcre3 (8.12-1) ...
+Setting up libpcre3 (8.12-3) ...
Setting up libxml2 (2.7.8.dfsg-2) ...
Setting up html2text (1.3.2a-15) ...
-Setting up libglib2.0-0 (2.24.2-1) ...
+Setting up libglib2.0-0 (2.28.1-1+b1) ...
+No schema files found: doing nothing.
Setting up libcroco3 (0.6.2-1) ...
Setting up libunistring0 (0.9.3-3) ...
Setting up gettext (0.18.1.1-3) ...
Setting up intltool-debian (0.35.0+20060710.1) ...
Setting up po-debconf (1.0.16+nmu1) ...
-Setting up debhelper (8.1.0) ...
-Setting up cdbs (0.4.92) ...
+Setting up debhelper (8.1.2) ...
Setting up zlib1g-dev (1:1.2.3.4.dfsg-3) ...
Removing negative dependencies:
Checking correctness of source dependencies...
Kernel: Linux 2.6.32-bpo.5-sparc64-smp sparc (sparc64)
-Toolchain package versions: libc6-dev_2.11.2-2 dpkg-dev_1.15.7.2 linux-libc-dev_2.6.32-17 gcc-4.4_4.4.4-6 g++-4.4_4.4.4-6 binutils_2.20.1-12 libstdc++6-4.4-dev_4.4.4-6 libstdc++6_4.4.4-6
-Package versions: apt_0.7.25.3 base-files_5.8 base-passwd_3.5.22 bash_4.1-3 binutils_2.20.1-12 bsdmainutils_8.2.2 bsdutils_1:2.17.2-3.1 build-essential_11.5 bzip2_1.0.5-4 cdbs_0.4.92 coreutils_8.5-1 cpp_4:4.4.4-2 cpp-4.4_4.4.4-6 dash_0.5.5.1-7 debconf_1.5.33 debconf-i18n_1.5.33 debfoster_2.7-1.1 debhelper_8.1.0 debian-archive-keyring_2009.01.31 debianutils_3.3 diffutils_1:3.0-1 dpkg_1.15.7.2 dpkg-dev_1.15.7.2 e2fslibs_1.41.12-2 e2fsprogs_1.41.12-2 fakeroot_1.14.4-1 file_5.04-5 findutils_4.4.2-1 g++_4:4.4.4-2 g++-4.4_4.4.4-6 gcc_4:4.4.4-2 gcc-4.4_4.4.4-6 gcc-4.4-base_4.4.4-6 gettext_0.18.1.1-3 gettext-base_0.18.1.1-3 gnupg_1.4.10-4 gpgv_1.4.10-4 grep_2.6.3-3 groff-base_1.21-4 gzip_1.3.12-9 hostname_3.04 html2text_1.3.2a-15 initscripts_2.88dsf-11 insserv_1.14.0-2 intltool-debian_0.35.0+20060710.1 libacl1_2.2.49-3 libattr1_1:2.4.44-2 libblkid1_2.17.2-3.1 libbz2-1.0_1.0.5-4 libc-bin_2.11.2-2 libc-dev-bin_2.11.2-2 libc6_2.11.2-2 libc6-dev_2.11.2-2 libc6-dev-sparc64_2.11.2-2 libc6-sparc64_2.11.2-2 libcomerr2_1.41.12-2 libcroco3_0.6.2-1 libdb4.7_4.7.25-9 libdb4.8_4.8.26-3 libdpkg-perl_1.15.7.2 libgc1c2_1:6.8-1.2 libgcc1_1:4.4.4-6 libgdbm3_1.8.3-9 libglib2.0-0_2.24.2-1 libgmp3c2_2:4.3.2+dfsg-1 libgomp1_4.4.4-6 liblocale-gettext-perl_1.05-6 liblzma2_4.999.9beta+20100527-1 libmagic1_5.04-5 libmpfr1ldbl_2.4.2-3 libncurses5_5.7+20100313-2 libpam-modules_1.1.1-3 libpam-runtime_1.1.1-3 libpam0g_1.1.1-3 libpcre3_8.12-1 libpipeline1_1.1.0-1 libreadline6_6.1-3 libselinux1_2.0.94-1 libsepol1_2.0.41-1 libss2_1.41.12-2 libstdc++6_4.4.4-6 libstdc++6-4.4-dev_4.4.4-6 libtext-charwidth-perl_0.04-6 libtext-iconv-perl_1.7-2 libtext-wrapi18n-perl_0.06-7 libtimedate-perl_1.2000-1 libunistring0_0.9.3-3 libusb-0.1-4_2:0.1.12-15 libuuid1_2.17.2-3.1 libxml2_2.7.8.dfsg-2 linux-libc-dev_2.6.32-17 login_1:4.1.4.2-1 lsb-base_3.2-23.1 make_3.81-8 man-db_2.5.9-4 mawk_1.3.3-15 mount_2.17.2-3.1 ncurses-base_5.7+20100313-2 ncurses-bin_5.7+20100313-2 netbase_4.42 passwd_1:4.1.4.2-1 patch_2.6-2 perl_5.10.1-13 perl-base_5.10.1-13 perl-modules_5.10.1-13 po-debconf_1.0.16+nmu1 readline-common_6.1-3 sed_4.2.1-7 sensible-utils_0.0.4 sudo_1.7.2p7-1 sysv-rc_2.88dsf-11 sysvinit_2.88dsf-11 sysvinit-utils_2.88dsf-11 tar_1.23-2 tzdata_2010j-1 util-linux_2.17.2-3.1 xz-utils_4.999.9beta+20100527-1 zlib1g_1:1.2.3.4.dfsg-3 zlib1g-dev_1:1.2.3.4.dfsg-3
+Toolchain package versions: libc6-dev_2.11.2-11 dpkg-dev_1.15.8.10 linux-libc-dev_2.6.37-2 gcc-4.4_4.4.5-13 g++-4.4_4.4.5-13 binutils_2.21.0.20110302-1 libstdc++6-4.4-dev_4.4.5-13 libstdc++6_4.5.2-4
+Package versions: apt_0.8.11.5 base-files_6.1 base-passwd_3.5.22+b1 bash_4.1-3 binutils_2.21.0.20110302-1 bsdmainutils_8.2.2 bsdutils_1:2.17.2-9.1 build-essential_11.5 bzip2_1.0.5-6 coreutils_8.5-1 cpp_4:4.4.5-3 cpp-4.4_4.4.5-13 dash_0.5.5.1-7.4 debconf_1.5.38 debconf-i18n_1.5.38 debfoster_2.7-1.1 debhelper_8.1.2 debian-archive-keyring_2010.08.28 debianutils_3.4.4 diffutils_1:3.0-1 dpkg_1.15.8.10 dpkg-dev_1.15.8.10 e2fslibs_1.41.12-2 e2fsprogs_1.41.12-2 fakeroot_1.14.5-2 file_5.04-5 findutils_4.4.2-1+b2 g++_4:4.4.5-3 g++-4.4_4.4.5-13 gcc_4:4.4.5-3 gcc-4.4_4.4.5-13 gcc-4.4-base_4.4.5-13 gcc-4.5-base_4.5.2-4 gettext_0.18.1.1-3 gettext-base_0.18.1.1-3 gnupg_1.4.11-3 gpgv_1.4.11-3 grep_2.6.3-3 groff-base_1.21-4 gzip_1.3.12-9 hostname_3.05 html2text_1.3.2a-15 initscripts_2.88dsf-13.1 insserv_1.14.0-2 intltool-debian_0.35.0+20060710.1 libacl1_2.2.49-4 libattr1_1:2.4.44-2 libblkid1_2.17.2-9.1 libbz2-1.0_1.0.5-6 libc-bin_2.11.2-11 libc-dev-bin_2.11.2-11 libc6_2.11.2-11 libc6-dev_2.11.2-11 libc6-dev-sparc64_2.11.2-11 libc6-sparc64_2.11.2-11 libcomerr2_1.41.12-2 libcroco3_0.6.2-1 libdb4.7_4.7.25-12 libdb4.8_4.8.30-4 libdpkg-perl_1.15.8.10 libgc1c2_1:7.1-7 libgcc1_1:4.5.2-4 libgdbm3_1.8.3-9+b1 libglib2.0-0_2.28.1-1+b1 libgmp3c2_2:4.3.2+dfsg-1 libgomp1_4.5.2-4 liblocale-gettext-perl_1.05-6+b1 liblzma2_5.0.0-2 libmagic1_5.04-5 libmpfr4_3.0.0-7 libncurses5_5.8-1 libpam-modules_1.1.2-2 libpam-runtime_1.1.2-2 libpam0g_1.1.2-2 libpcre3_8.12-3 libpipeline1_1.1.0-1 libreadline6_6.1-3 libselinux1_2.0.96-1 libsepol1_2.0.42-1 libss2_1.41.12-2 libstdc++6_4.5.2-4 libstdc++6-4.4-dev_4.4.5-13 libtext-charwidth-perl_0.04-6+b1 libtext-iconv-perl_1.7-2+b1 libtext-wrapi18n-perl_0.06-7 libtimedate-perl_1.2000-1 libunistring0_0.9.3-3 libusb-0.1-4_2:0.1.12-17 libuuid1_2.17.2-9.1 libxml2_2.7.8.dfsg-2 linux-libc-dev_2.6.37-2 login_1:4.1.4.2+svn3283-3 lsb-base_3.2-27 make_3.81-8 man-db_2.5.9-4 mawk_1.3.3-15+b1 mount_2.17.2-9.1 ncurses-base_5.8-1 ncurses-bin_5.8-1 passwd_1:4.1.4.2+svn3283-3 patch_2.6.1-1 perl_5.10.1-17 perl-base_5.10.1-17 perl-modules_5.10.1-17 po-debconf_1.0.16+nmu1 readline-common_6.1-3 sed_4.2.1-9 sensible-utils_0.0.6 sudo_1.7.4p6-1 sysv-rc_2.88dsf-13.1 sysvinit_2.88dsf-13.1 sysvinit-utils_2.88dsf-13.1 tar_1.25-3 tzdata_2011b-2 util-linux_2.17.2-9.1 xz-utils_5.0.0-2 zlib1g_1:1.2.3.4.dfsg-3 zlib1g-dev_1:1.2.3.4.dfsg-3
┌──────────────────────────────────────────────────────────────────────────────┐
│ Build │
@@ -216,12 +221,12 @@ Unpack source
dpkg-source: warning: -sn is not a valid option for Dpkg::Source::Package::V3::quilt
gpgv: keyblock resource `/home/buildd/.gnupg/trustedkeys.gpg': file open error
-gpgv: Signature made Tue Feb 8 07:20:43 2011 UTC using RSA key ID 2295D502
+gpgv: Signature made Fri Mar 11 21:59:41 2011 UTC using DSA key ID C09FD35A
gpgv: Can't check signature: public key not found
-dpkg-source: warning: failed to verify signature on ./bwa_0.5.9-1.dsc
+dpkg-source: warning: failed to verify signature on ./bwa_0.5.9-2.dsc
dpkg-source: info: extracting bwa in bwa-0.5.9
dpkg-source: info: unpacking bwa_0.5.9.orig.tar.bz2
-dpkg-source: info: unpacking bwa_0.5.9-1.debian.tar.gz
+dpkg-source: info: unpacking bwa_0.5.9-2.debian.tar.gz
Check disc space
────────────────
@@ -230,159 +235,161 @@ Check disc space
dpkg-buildpackage
─────────────────
-dpkg-buildpackage: export CPPFLAGS from dpkg-buildflags (origin: vendor):
dpkg-buildpackage: export CFLAGS from dpkg-buildflags (origin: vendor): -g -O2
+dpkg-buildpackage: export CPPFLAGS from dpkg-buildflags (origin: vendor):
dpkg-buildpackage: export CXXFLAGS from dpkg-buildflags (origin: vendor): -g -O2
dpkg-buildpackage: export FFLAGS from dpkg-buildflags (origin: vendor): -g -O2
dpkg-buildpackage: export LDFLAGS from dpkg-buildflags (origin: vendor):
dpkg-buildpackage: source package bwa
-dpkg-buildpackage: source version 0.5.9-1
+dpkg-buildpackage: source version 0.5.9-2
+ dpkg-source --before-build bwa-0.5.9
dpkg-buildpackage: host architecture sparc
/usr/bin/fakeroot debian/rules clean
-test -x debian/rules
-dh_testroot
-rm -f debian/stamp-makefile-build debian/stamp-makefile-install
-/usr/bin/make -C . CFLAGS="-g -O2 -g -O2" CXXFLAGS="-g -O2 -g -O2" CPPFLAGS="" LDFLAGS="" -k clean
-make[1]: Entering directory `/build/buildd-bwa_0.5.9-1-sparc-nsEeFI/bwa-0.5.9'
-make[2]: Entering directory `/build/buildd-bwa_0.5.9-1-sparc-nsEeFI/bwa-0.5.9'
+dh clean
+ dh_testdir
+ dh_auto_clean
+make[1]: Entering directory `/build/buildd-bwa_0.5.9-2-sparc-0heD8g/bwa-0.5.9'
+make[2]: Entering directory `/build/buildd-bwa_0.5.9-2-sparc-0heD8g/bwa-0.5.9'
rm -f gmon.out *.o a.out bwa *~ *.a
-make[2]: Leaving directory `/build/buildd-bwa_0.5.9-1-sparc-nsEeFI/bwa-0.5.9'
-make[2]: Entering directory `/build/buildd-bwa_0.5.9-1-sparc-nsEeFI/bwa-0.5.9/bwt_gen'
+make[2]: Leaving directory `/build/buildd-bwa_0.5.9-2-sparc-0heD8g/bwa-0.5.9'
+make[2]: Entering directory `/build/buildd-bwa_0.5.9-2-sparc-0heD8g/bwa-0.5.9/bwt_gen'
rm -f gmon.out *.o a.out *~ *.a
-make[2]: Leaving directory `/build/buildd-bwa_0.5.9-1-sparc-nsEeFI/bwa-0.5.9/bwt_gen'
-make[1]: Leaving directory `/build/buildd-bwa_0.5.9-1-sparc-nsEeFI/bwa-0.5.9'
-dh_clean
+make[2]: Leaving directory `/build/buildd-bwa_0.5.9-2-sparc-0heD8g/bwa-0.5.9/bwt_gen'
+make[1]: Leaving directory `/build/buildd-bwa_0.5.9-2-sparc-0heD8g/bwa-0.5.9'
+ dh_clean
debian/rules build
-test -x debian/rules
-mkdir -p "."
-/usr/bin/make -C . CFLAGS="-g -O2 -g -O2" CXXFLAGS="-g -O2 -g -O2" CPPFLAGS="" LDFLAGS=""
-make[1]: Entering directory `/build/buildd-bwa_0.5.9-1-sparc-nsEeFI/bwa-0.5.9'
-make[2]: Entering directory `/build/buildd-bwa_0.5.9-1-sparc-nsEeFI/bwa-0.5.9'
+dh build
+ dh_testdir
+ dh_auto_configure
+ dh_auto_build
+make[1]: Entering directory `/build/buildd-bwa_0.5.9-2-sparc-0heD8g/bwa-0.5.9'
+make[2]: Entering directory `/build/buildd-bwa_0.5.9-2-sparc-0heD8g/bwa-0.5.9'
make[2]: Nothing to be done for `lib'.
-make[2]: Leaving directory `/build/buildd-bwa_0.5.9-1-sparc-nsEeFI/bwa-0.5.9'
-make[2]: Entering directory `/build/buildd-bwa_0.5.9-1-sparc-nsEeFI/bwa-0.5.9/bwt_gen'
-gcc -c -g -O2 -g -O2 -DHAVE_PTHREAD bwt_gen.c -o bwt_gen.o
-gcc -c -g -O2 -g -O2 -DHAVE_PTHREAD QSufSort.c -o QSufSort.o
+make[2]: Leaving directory `/build/buildd-bwa_0.5.9-2-sparc-0heD8g/bwa-0.5.9'
+make[2]: Entering directory `/build/buildd-bwa_0.5.9-2-sparc-0heD8g/bwa-0.5.9/bwt_gen'
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD bwt_gen.c -o bwt_gen.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD QSufSort.c -o QSufSort.o
ar -cru libbwtgen.a bwt_gen.o QSufSort.o
-make[2]: Leaving directory `/build/buildd-bwa_0.5.9-1-sparc-nsEeFI/bwa-0.5.9/bwt_gen'
-gcc -c -g -O2 -g -O2 -DHAVE_PTHREAD utils.c -o utils.o
-gcc -c -g -O2 -g -O2 -DHAVE_PTHREAD bwt.c -o bwt.o
-gcc -c -g -O2 -g -O2 -DHAVE_PTHREAD bwtio.c -o bwtio.o
-gcc -c -g -O2 -g -O2 -DHAVE_PTHREAD bwtaln.c -o bwtaln.o
-gcc -c -g -O2 -g -O2 -DHAVE_PTHREAD bwtgap.c -o bwtgap.o
-gcc -c -g -O2 -g -O2 -DHAVE_PTHREAD is.c -o is.o
-gcc -c -g -O2 -g -O2 -DHAVE_PTHREAD bntseq.c -o bntseq.o
-gcc -c -g -O2 -g -O2 -DHAVE_PTHREAD bwtmisc.c -o bwtmisc.o
-gcc -c -g -O2 -g -O2 -DHAVE_PTHREAD bwtindex.c -o bwtindex.o
-gcc -c -g -O2 -g -O2 -DHAVE_PTHREAD stdaln.c -o stdaln.o
-gcc -c -g -O2 -g -O2 -DHAVE_PTHREAD simple_dp.c -o simple_dp.o
-gcc -c -g -O2 -g -O2 -DHAVE_PTHREAD bwaseqio.c -o bwaseqio.o
-gcc -c -g -O2 -g -O2 -DHAVE_PTHREAD bwase.c -o bwase.o
-gcc -c -g -O2 -g -O2 -DHAVE_PTHREAD bwape.c -o bwape.o
-gcc -c -g -O2 -g -O2 -DHAVE_PTHREAD kstring.c -o kstring.o
-gcc -c -g -O2 -g -O2 -DHAVE_PTHREAD cs2nt.c -o cs2nt.o
-gcc -c -g -O2 -g -O2 -DHAVE_PTHREAD bwtsw2_core.c -o bwtsw2_core.o
-gcc -c -g -O2 -g -O2 -DHAVE_PTHREAD bwtsw2_main.c -o bwtsw2_main.o
-gcc -c -g -O2 -g -O2 -DHAVE_PTHREAD bwtsw2_aux.c -o bwtsw2_aux.o
-gcc -c -g -O2 -g -O2 -DHAVE_PTHREAD bwt_lite.c -o bwt_lite.o
-gcc -c -g -O2 -g -O2 -DHAVE_PTHREAD bwtsw2_chain.c -o bwtsw2_chain.o
-gcc -c -g -O2 -g -O2 -DHAVE_PTHREAD bamlite.c -o bamlite.o
-gcc -c -g -O2 -g -O2 -DHAVE_PTHREAD main.c -o main.o
-gcc -g -O2 -g -O2 -DHAVE_PTHREAD utils.o bwt.o bwtio.o bwtaln.o bwtgap.o is.o bntseq.o bwtmisc.o bwtindex.o stdaln.o simple_dp.o bwaseqio.o bwase.o bwape.o kstring.o cs2nt.o bwtsw2_core.o bwtsw2_main.o bwtsw2_aux.o bwt_lite.o bwtsw2_chain.o bamlite.o main.o -o bwa -lm -lz -lpthread -Lbwt_gen -lbwtgen
-make[1]: Leaving directory `/build/buildd-bwa_0.5.9-1-sparc-nsEeFI/bwa-0.5.9'
-touch debian/stamp-makefile-build
-DEB_MAKE_CHECK_TARGET unset, not running checks
+make[2]: Leaving directory `/build/buildd-bwa_0.5.9-2-sparc-0heD8g/bwa-0.5.9/bwt_gen'
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD utils.c -o utils.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD bwt.c -o bwt.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD bwtio.c -o bwtio.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD bwtaln.c -o bwtaln.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD bwtgap.c -o bwtgap.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD is.c -o is.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD bntseq.c -o bntseq.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD bwtmisc.c -o bwtmisc.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD bwtindex.c -o bwtindex.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD stdaln.c -o stdaln.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD simple_dp.c -o simple_dp.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD bwaseqio.c -o bwaseqio.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD bwase.c -o bwase.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD bwape.c -o bwape.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD kstring.c -o kstring.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD cs2nt.c -o cs2nt.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD bwtsw2_core.c -o bwtsw2_core.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD bwtsw2_main.c -o bwtsw2_main.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD bwtsw2_aux.c -o bwtsw2_aux.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD bwt_lite.c -o bwt_lite.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD bwtsw2_chain.c -o bwtsw2_chain.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD bamlite.c -o bamlite.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD main.c -o main.o
+gcc -g -Wall -O2 -DHAVE_PTHREAD utils.o bwt.o bwtio.o bwtaln.o bwtgap.o is.o bntseq.o bwtmisc.o bwtindex.o stdaln.o simple_dp.o bwaseqio.o bwase.o bwape.o kstring.o cs2nt.o bwtsw2_core.o bwtsw2_main.o bwtsw2_aux.o bwt_lite.o bwtsw2_chain.o bamlite.o main.o -o bwa -lm -lz -lpthread -Lbwt_gen -lbwtgen
+make[1]: Leaving directory `/build/buildd-bwa_0.5.9-2-sparc-0heD8g/bwa-0.5.9'
+ dh_auto_test
/usr/bin/fakeroot debian/rules binary-arch
-test -x debian/rules
-dh_testroot
-dh_prep
-dh_installdirs -A
-mkdir -p "."
-DEB_MAKE_CHECK_TARGET unset, not running checks
-DEB_MAKE_INSTALL_TARGET unset, skipping default makefile.mk common-install target
-Adding cdbs dependencies to debian/bwa.substvars
-dh_installdirs -pbwa
-dh_installdocs -pbwa ./README ./NEWS
-dh_installexamples -pbwa
-dh_installman -pbwa
-dh_installinfo -pbwa
-dh_installmenu -pbwa
-dh_installcron -pbwa
-dh_installinit -pbwa
-dh_installdebconf -pbwa
-dh_installemacsen -pbwa
-dh_installcatalogs -pbwa
-dh_installpam -pbwa
-dh_installlogrotate -pbwa
-dh_installlogcheck -pbwa
-dh_installchangelogs -pbwa ./ChangeLog
-dh_installudev -pbwa
-dh_lintian -pbwa
-dh_bugfiles -pbwa
-dh_install -pbwa
-dh_link -pbwa
-dh_installmime -pbwa
-dh_strip -pbwa
-dh_compress -pbwa
-dh_fixperms -pbwa
-dh_makeshlibs -pbwa
-dh_installdeb -pbwa
-dh_perl -pbwa
-dh_shlibdeps -pbwa
-dh_gencontrol -pbwa
+dh binary-arch
+ dh_testroot -a
+ dh_prep -a
+ dh_installdirs -a
+ dh_auto_install -a
+ dh_install -a
+ dh_installdocs -a
+ dh_installchangelogs -a
+ dh_installexamples -a
+ dh_installman -a
+ dh_installcatalogs -a
+ dh_installcron -a
+ dh_installdebconf -a
+ dh_installemacsen -a
+ dh_installifupdown -a
+ dh_installinfo -a
+ dh_installinit -a
+ dh_installmenu -a
+ dh_installmime -a
+ dh_installmodules -a
+ dh_installlogcheck -a
+ dh_installlogrotate -a
+ dh_installpam -a
+ dh_installppp -a
+ dh_installudev -a
+ dh_installwm -a
+ dh_installxfonts -a
+ dh_bugfiles -a
+ dh_lintian -a
+ dh_gconf -a
+ dh_icons -a
+ dh_perl -a
+ dh_usrlocal -a
+ dh_link -a
+ dh_compress -a
+ dh_fixperms -a
+ dh_strip -a
+ dh_makeshlibs -a
+ dh_shlibdeps -a
+ dh_installdeb -a
+ dh_gencontrol -a
dpkg-gencontrol: warning: package bwa: unused substitution variable ${perl:Depends}
-dh_md5sums -pbwa
-dh_builddeb -pbwa
-dpkg-deb: building package `bwa' in `../bwa_0.5.9-1_sparc.deb'.
- dpkg-genchanges -B -msparc Build Daemon (lebrun) <buildd_sparc-lebrun at buildd.debian.org> >../bwa_0.5.9-1_sparc.changes
+ dh_md5sums -a
+ dh_builddeb -a
+dpkg-deb: building package `bwa' in `../bwa_0.5.9-2_sparc.deb'.
+ dpkg-genchanges -B -msparc Build Daemon (lebrun) <buildd_sparc-lebrun at buildd.debian.org> >../bwa_0.5.9-2_sparc.changes
dpkg-genchanges: arch-specific upload - not including arch-independent packages
dpkg-genchanges: binary-only upload - not including any source code
+ dpkg-source --after-build bwa-0.5.9
dpkg-buildpackage: binary only upload (no source included)
────────────────────────────────────────────────────────────────────────────────
-Build finished at 20110208-1359
+Build finished at 20110312-0839
-bwa_0.5.9-1_sparc.changes:
+bwa_0.5.9-2_sparc.changes:
Format: 1.8
-Date: Tue, 08 Feb 2011 16:11:12 +0900
+Date: Fri, 11 Mar 2011 22:49:07 +0100
Source: bwa
Binary: bwa
Architecture: sparc
-Version: 0.5.9-1
+Version: 0.5.9-2
Distribution: sid
Urgency: low
Maintainer: sparc Build Daemon (lebrun) <buildd_sparc-lebrun at buildd.debian.org>
-Changed-By: Charles Plessy <plessy at debian.org>
+Changed-By: Andreas Tille <tille at debian.org>
Description:
bwa - Burrows-Wheeler Aligner
Changes:
- bwa (0.5.9-1) unstable; urgency=low
+ bwa (0.5.9-2) unstable; urgency=low
.
- * New usptream release
- - Upstream moved to GitHub (debian/upstream-metadata.yaml).
- - Checked copyright; one file was removed (debian/copyright).
- * Migrated the Debian source package to Git (debian/control).
- * Use Debhelper 8 (debian/control, debian/compat).
+ * Watchfile should not regard rc releases.
+ * Drop cdbs in favour of dh
Checksums-Sha1:
- c558fd30d6d49f216a0f70b59ab5baf98a1a5601 141936 bwa_0.5.9-1_sparc.deb
+ c66ab67d88a7bb7079115f810118e9c13b23c108 142286 bwa_0.5.9-2_sparc.deb
Checksums-Sha256:
- b691b32ea45a1fed0d01c6ef6ecf3d622010b580326074bc53b8f4b5ca17bf10 141936 bwa_0.5.9-1_sparc.deb
+ 91c3dd8d099c0502eab8a357e804e444d5ecc7cf3e420394c449548c27972f8b 142286 bwa_0.5.9-2_sparc.deb
Files:
- 2b0e94456d4236ab33abde683ba0f6ff 141936 science optional bwa_0.5.9-1_sparc.deb
+ 79e5e4505e4f98f29d86b0ad202a99cf 142286 science optional bwa_0.5.9-2_sparc.deb
┌──────────────────────────────────────────────────────────────────────────────┐
│ Package contents │
└──────────────────────────────────────────────────────────────────────────────┘
-bwa_0.5.9-1_sparc.deb
+bwa_0.5.9-2_sparc.deb
─────────────────────
new debian package, version 2.0.
- size 141936 bytes: control archive= 972 bytes.
+ size 142286 bytes: control archive= 972 bytes.
774 bytes, 17 lines control
615 bytes, 10 lines md5sums
Package: bwa
- Version: 0.5.9-1
+ Version: 0.5.9-2
Architecture: sparc
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
Installed-Size: 316
@@ -399,23 +406,23 @@ bwa_0.5.9-1_sparc.deb
to around 100 kbp. Both algorithms do gapped alignment. They are usually more
accurate and faster on queries with low error rates.
-drwxr-xr-x root/root 0 2011-02-08 13:59 ./
-drwxr-xr-x root/root 0 2011-02-08 13:59 ./usr/
-drwxr-xr-x root/root 0 2011-02-08 13:59 ./usr/bin/
--rwxr-xr-x root/root 198784 2011-02-08 13:59 ./usr/bin/bwa
-drwxr-xr-x root/root 0 2011-02-08 13:59 ./usr/share/
-drwxr-xr-x root/root 0 2011-02-08 13:59 ./usr/share/doc/
-drwxr-xr-x root/root 0 2011-02-08 13:59 ./usr/share/doc/bwa/
+drwxr-xr-x root/root 0 2011-03-12 08:39 ./
+drwxr-xr-x root/root 0 2011-03-12 08:39 ./usr/
+drwxr-xr-x root/root 0 2011-03-12 08:39 ./usr/bin/
+-rwxr-xr-x root/root 198784 2011-03-12 08:39 ./usr/bin/bwa
+drwxr-xr-x root/root 0 2011-03-12 08:39 ./usr/share/
+drwxr-xr-x root/root 0 2011-03-12 08:39 ./usr/share/doc/
+drwxr-xr-x root/root 0 2011-03-12 08:39 ./usr/share/doc/bwa/
-rw-r--r-- root/root 5857 2011-01-25 00:00 ./usr/share/doc/bwa/NEWS.gz
-rw-r--r-- root/root 2676 2011-02-08 07:09 ./usr/share/doc/bwa/copyright
-rw-r--r-- root/root 17912 2011-01-25 00:00 ./usr/share/doc/bwa/ChangeLog.gz
-rw-r--r-- root/root 17912 2011-01-25 00:00 ./usr/share/doc/bwa/changelog.gz
-rw-r--r-- root/root 634 2011-01-25 00:00 ./usr/share/doc/bwa/README
--rw-r--r-- root/root 881 2011-02-08 07:11 ./usr/share/doc/bwa/changelog.Debian.gz
-drwxr-xr-x root/root 0 2011-02-08 13:59 ./usr/share/man/
-drwxr-xr-x root/root 0 2011-02-08 13:59 ./usr/share/man/man1/
--rw-r--r-- root/root 7554 2011-02-08 13:59 ./usr/share/man/man1/bwa.1.gz
-drwxr-xr-x root/root 0 2011-02-08 13:59 ./usr/share/bwa/
+-rw-r--r-- root/root 957 2011-03-11 21:54 ./usr/share/doc/bwa/changelog.Debian.gz
+drwxr-xr-x root/root 0 2011-03-12 08:39 ./usr/share/man/
+drwxr-xr-x root/root 0 2011-03-12 08:39 ./usr/share/man/man1/
+-rw-r--r-- root/root 7554 2011-03-12 08:39 ./usr/share/man/man1/bwa.1.gz
+drwxr-xr-x root/root 0 2011-03-12 08:39 ./usr/share/bwa/
-rwxr-xr-x root/root 3176 2011-01-25 00:00 ./usr/share/bwa/solid2fastq.pl
-rwxr-xr-x root/root 616 2011-01-25 00:00 ./usr/share/bwa/qualfa2fq.pl
@@ -426,9 +433,9 @@ drwxr-xr-x root/root 0 2011-02-08 13:59 ./usr/share/bwa/
Built successfully
────────────────────────────────────────────────────────────────────────────────
-Purging /var/lib/schroot/mount/sid-sparc-sbuild-a20e677c-6f45-4c18-a629-3b02c202a5c8/build/buildd-bwa_0.5.9-1-sparc-nsEeFI
+Purging /var/lib/schroot/mount/sid-sparc-sbuild-efe7e6ae-cf48-40bd-b789-1fc0f159c3ed/build/buildd-bwa_0.5.9-2-sparc-0heD8g
Not removing build depends: cloned chroot in use
────────────────────────────────────────────────────────────────────────────────
-Finished at 20110208-1359
-Build needed 00:02:46, 2480k disc space
+Finished at 20110312-0839
+Build needed 00:02:40, 2480k disc space
--
Burrows-Wheeler Aligner
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