[med-svn] [SCM] bwa branch, meta, updated. meta/0.5.9-2-1-gf5c3b90
Charles Plessy
plessy at debian.org
Mon Nov 14 04:25:21 UTC 2011
The following commit has been merged in the meta branch:
commit f5c3b90ea4f37626e7569b2db6e98536674f4c62
Author: Charles Plessy <plessy at debian.org>
Date: Mon Nov 14 13:24:45 2011 +0900
Uploaded bwa_0.5.10-1_amd64.changes.
diff --git a/amd64.log b/amd64.log
index ceba5b6..53a9050 100644
--- a/amd64.log
+++ b/amd64.log
@@ -1,20 +1,29 @@
-sbuild (Debian sbuild) 0.60.8 (12 Dec 2010) on anx178.gsc.riken.jp
+sbuild (Debian sbuild) 0.62.5 (13 Jul 2011) on anx191
╔══════════════════════════════════════════════════════════════════════════════╗
-║ bwa 0.5.9-1 (amd64) 08 Feb 2011 16:16 ║
+║ bwa 0.5.10-1 (amd64) 14 Nov 2011 13:16 ║
╚══════════════════════════════════════════════════════════════════════════════╝
Package: bwa
-Version: 0.5.9-1
-Source Version: 0.5.9-1
+Version: 0.5.10-1
+Source Version: 0.5.10-1
+Distribution: unstable
Architecture: amd64
-Hit http://ftp.riken.jp unstable Release.gpg
-Ign http://ftp.riken.jp/Linux/debian/debian/ unstable/main Translation-en
-Hit http://ftp.riken.jp unstable Release
-Hit http://ftp.riken.jp unstable/main Sources/DiffIndex
-Hit http://ftp.riken.jp unstable/main amd64 Packages/DiffIndex
-Ign http://ftp.riken.jp unstable/main 2011-02-07-0555.44.pdiff
-Hit http://ftp.riken.jp unstable/main
+
+I: NOTICE: Log filtering will replace 'build/bwa-IQ8gNJ/bwa-0.5.10' with '«PKGBUILDDIR»'
+I: NOTICE: Log filtering will replace 'build/bwa-IQ8gNJ' with '«BUILDDIR»'
+I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/sid-amd64-sbuild-bb9afc54-fb25-4ce3-9c23-5dbd55edc8e0' with '«CHROOT»'
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Update chroot │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+Get:1 http://ftp.jp.debian.org sid InRelease [146 kB]
+Get:2 http://ftp.jp.debian.org sid/main amd64 Packages/DiffIndex [2038 B]
+Get:3 http://ftp.jp.debian.org sid/main TranslationIndex [2045 B]
+Get:4 http://ftp.jp.debian.org sid/main amd64 2011-11-14-0212.51.pdiff [11.1 kB]
+Get:5 http://ftp.jp.debian.org sid/main amd64 2011-11-14-0212.51.pdiff [11.1 kB]
+Fetched 161 kB in 1s (103 kB/s)
Reading package lists...
Reading package lists...
Building dependency tree...
@@ -29,167 +38,123 @@ Reading state information...
Local sources
─────────────
-bwa_0.5.9-1.dsc exists in .; copying to chroot
+bwa_0.5.10-1.dsc exists in .; copying to chroot
Check arch
──────────
+Merged Build-Depends: build-essential, fakeroot
+Filtered Build-Depends: build-essential, fakeroot
+dpkg-deb: building package `sbuild-build-depends-core-dummy' in `/«BUILDDIR»/resolver-IZq7an/apt_archive/sbuild-build-depends-core-dummy.deb'.
+OK
+Reading package lists...
┌──────────────────────────────────────────────────────────────────────────────┐
-│ Install core build dependencies (internal resolver) │
+│ Install core build dependencies (apt-based resolver) │
└──────────────────────────────────────────────────────────────────────────────┘
-Build-Depends: build-essential, fakeroot
-Checking for already installed dependencies...
-build-essential: already installed (11.5)
-fakeroot: already installed (1.14.5-1)
-Checking for dependency conflicts...
-Installing positive dependencies:
+Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
+sbuild-build-depends-core-dummy is already the newest version.
0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
-Removing negative dependencies:
+Merged Build-Depends: base-files, base-passwd, bash, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, ncurses-base, ncurses-bin, perl-base, sed, login, sysvinit-utils, sysvinit, tar, bsdutils, mount, util-linux, libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 8), zlib1g-dev
+Filtered Build-Depends: base-files, base-passwd, bash, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, ncurses-base, ncurses-bin, perl-base, sed, login, sysvinit-utils, sysvinit, tar, bsdutils, mount, util-linux, libc6-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 8), zlib1g-dev
+dpkg-deb: building package `sbuild-build-depends-bwa-dummy' in `/«BUILDDIR»/resolver-psUOgp/apt_archive/sbuild-build-depends-bwa-dummy.deb'.
+OK
Reading package lists...
-Building dependency tree...
-Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
-Checking correctness of dependencies...
┌──────────────────────────────────────────────────────────────────────────────┐
-│ Install bwa build dependencies (internal resolver) │
+│ Install bwa build dependencies (apt-based resolver) │
└──────────────────────────────────────────────────────────────────────────────┘
-Build-Depends: base-files, base-passwd, bash, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, ncurses-base, ncurses-bin, perl-base, sed, login, sysvinit-utils, sysvinit, tar, bsdutils, mount, util-linux, libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), cdbs, debhelper (>= 8), zlib1g-dev
-Checking for already installed dependencies...
-base-files: already installed (6.0)
-base-passwd: already installed (3.5.22)
-bash: already installed (4.1-3)
-coreutils: already installed (8.5-1)
-dash: already installed (0.5.5.1-7.4)
-debianutils: already installed (3.4.3)
-diffutils: already installed (1:3.0-1)
-dpkg: already installed (1.15.8.10)
-e2fsprogs: already installed (1.41.12-2)
-findutils: already installed (4.4.2-1+b1)
-grep: already installed (2.6.3-3)
-gzip: already installed (1.3.12-9)
-hostname: already installed (3.05)
-ncurses-base: already installed (5.7+20100313-5)
-ncurses-bin: already installed (5.7+20100313-5)
-perl-base: already installed (5.10.1-17)
-sed: already installed (4.2.1-8)
-login: already installed (1:4.1.4.2+svn3283-2)
-sysvinit-utils: already installed (2.88dsf-13.1)
-sysvinit: already installed (2.88dsf-13.1)
-tar: already installed (1.25-3)
-bsdutils: already installed (1:2.17.2-9)
-mount: already installed (2.17.2-9)
-util-linux: already installed (2.17.2-9)
-libc6-dev: already installed (2.11.2-11)
-gcc: already installed (4:4.4.5-2 >= 4:4.4.3 is satisfied)
-g++: already installed (4:4.4.5-2 >= 4:4.4.3 is satisfied)
-make: already installed (3.81-8)
-dpkg-dev: already installed (1.15.8.10 >= 1.13.5 is satisfied)
-cdbs: missing
-debhelper: missing
-Using default version 8.1.0
-zlib1g-dev: missing
-Checking for dependency conflicts...
-Installing positive dependencies: cdbs debhelper zlib1g-dev
+Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following extra packages will be installed:
- bsdmainutils file gettext gettext-base groff-base html2text intltool-debian
- libcroco3 libglib2.0-0 libmagic1 libpcre3 libunistring0 libxml2 man-db
- po-debconf
+ debhelper file gettext gettext-base groff-base html2text intltool-debian
+ libcroco3 libglib2.0-0 libmagic1 libpcre3 libpipeline1 libunistring0 libxml2
+ man-db po-debconf zlib1g-dev
Suggested packages:
- wamerican wordlist whois vacation devscripts doc-base dh-make gettext-doc
- groff less www-browser libmail-box-perl
+ dh-make gettext-doc groff less www-browser libmail-box-perl
Recommended packages:
- autotools-dev curl wget lynx-cur autopoint libglib2.0-data shared-mime-info
- xml-core libmail-sendmail-perl
+ curl wget lynx-cur autopoint libglib2.0-data shared-mime-info xml-core
+ libmail-sendmail-perl
The following NEW packages will be installed:
- bsdmainutils cdbs debhelper file gettext gettext-base groff-base html2text
- intltool-debian libcroco3 libglib2.0-0 libmagic1 libpcre3 libunistring0
- libxml2 man-db po-debconf zlib1g-dev
-0 upgraded, 18 newly installed, 0 to remove and 0 not upgraded.
-Need to get 552 kB/10.5 MB of archives.
-After this operation, 28.7 MB of additional disk space will be used.
-Get:1 http://ftp.riken.jp/Linux/debian/debian/ unstable/main debhelper all 8.1.0 [552 kB]
+ debhelper file gettext gettext-base groff-base html2text intltool-debian
+ libcroco3 libglib2.0-0 libmagic1 libpcre3 libpipeline1 libunistring0 libxml2
+ man-db po-debconf sbuild-build-depends-bwa-dummy zlib1g-dev
debconf: delaying package configuration, since apt-utils is not installed
-Fetched 552 kB in 0s (2049 kB/s)
-Selecting previously deselected package bsdmainutils.
-(Reading database ... 10134 files and directories currently installed.)
-Unpacking bsdmainutils (from .../bsdmainutils_8.2.2_amd64.deb) ...
-Selecting previously deselected package groff-base.
-Unpacking groff-base (from .../groff-base_1.20.1-10_amd64.deb) ...
-Selecting previously deselected package man-db.
-Unpacking man-db (from .../man-db_2.5.7-8_amd64.deb) ...
-Selecting previously deselected package libmagic1.
-Unpacking libmagic1 (from .../libmagic1_5.04-5_amd64.deb) ...
-Selecting previously deselected package file.
-Unpacking file (from .../archives/file_5.04-5_amd64.deb) ...
-Selecting previously deselected package gettext-base.
-Unpacking gettext-base (from .../gettext-base_0.18.1.1-3_amd64.deb) ...
-Selecting previously deselected package libpcre3.
-Unpacking libpcre3 (from .../libpcre3_8.02-1.1_amd64.deb) ...
-Selecting previously deselected package libxml2.
-Unpacking libxml2 (from .../libxml2_2.7.8.dfsg-2_amd64.deb) ...
-Selecting previously deselected package html2text.
+0 upgraded, 18 newly installed, 0 to remove and 0 not upgraded.
+Need to get 0 B/9162 kB of archives.
+After this operation, 25.4 MB of additional disk space will be used.
+Selecting previously unselected package libpipeline1.
+(Reading database ... 10824 files and directories currently installed.)
+Unpacking libpipeline1 (from .../libpipeline1_1.2.0-5_amd64.deb) ...
+Selecting previously unselected package libpcre3.
+Unpacking libpcre3 (from .../libpcre3_8.12-4_amd64.deb) ...
+Selecting previously unselected package libglib2.0-0.
+Unpacking libglib2.0-0 (from .../libglib2.0-0_2.28.8-1_amd64.deb) ...
+Selecting previously unselected package libxml2.
+Unpacking libxml2 (from .../libxml2_2.7.8.dfsg-5_amd64.deb) ...
+Selecting previously unselected package libcroco3.
+Unpacking libcroco3 (from .../libcroco3_0.6.2-2_amd64.deb) ...
+Selecting previously unselected package libunistring0.
+Unpacking libunistring0 (from .../libunistring0_0.9.3-5_amd64.deb) ...
+Selecting previously unselected package groff-base.
+Unpacking groff-base (from .../groff-base_1.21-6_amd64.deb) ...
+Selecting previously unselected package man-db.
+Unpacking man-db (from .../man-db_2.6.0.2-3_amd64.deb) ...
+Selecting previously unselected package libmagic1.
+Unpacking libmagic1 (from .../libmagic1_5.09-2_amd64.deb) ...
+Selecting previously unselected package file.
+Unpacking file (from .../archives/file_5.09-2_amd64.deb) ...
+Selecting previously unselected package gettext-base.
+Unpacking gettext-base (from .../gettext-base_0.18.1.1-5_amd64.deb) ...
+Selecting previously unselected package html2text.
Unpacking html2text (from .../html2text_1.3.2a-15_amd64.deb) ...
-Selecting previously deselected package libglib2.0-0.
-Unpacking libglib2.0-0 (from .../libglib2.0-0_2.24.2-1_amd64.deb) ...
-Selecting previously deselected package libcroco3.
-Unpacking libcroco3 (from .../libcroco3_0.6.2-1_amd64.deb) ...
-Selecting previously deselected package libunistring0.
-Unpacking libunistring0 (from .../libunistring0_0.9.3-3_amd64.deb) ...
-Selecting previously deselected package gettext.
-Unpacking gettext (from .../gettext_0.18.1.1-3_amd64.deb) ...
-Selecting previously deselected package intltool-debian.
+Selecting previously unselected package gettext.
+Unpacking gettext (from .../gettext_0.18.1.1-5_amd64.deb) ...
+Selecting previously unselected package intltool-debian.
Unpacking intltool-debian (from .../intltool-debian_0.35.0+20060710.1_all.deb) ...
-Selecting previously deselected package po-debconf.
+Selecting previously unselected package po-debconf.
Unpacking po-debconf (from .../po-debconf_1.0.16+nmu1_all.deb) ...
-Selecting previously deselected package debhelper.
-Unpacking debhelper (from .../debhelper_8.1.0_all.deb) ...
-Selecting previously deselected package cdbs.
-Unpacking cdbs (from .../archives/cdbs_0.4.89_all.deb) ...
-Selecting previously deselected package zlib1g-dev.
+Selecting previously unselected package debhelper.
+Unpacking debhelper (from .../debhelper_8.9.9_all.deb) ...
+Selecting previously unselected package zlib1g-dev.
Unpacking zlib1g-dev (from .../zlib1g-dev_1%3a1.2.3.4.dfsg-3_amd64.deb) ...
-Setting up bsdmainutils (8.2.2) ...
-update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode.
-update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode.
-Setting up groff-base (1.20.1-10) ...
-Setting up man-db (2.5.7-8) ...
-debconf: unable to initialize frontend: Dialog
-debconf: (TERM is not set, so the dialog frontend is not usable.)
-debconf: falling back to frontend: Readline
+Selecting previously unselected package sbuild-build-depends-bwa-dummy.
+Unpacking sbuild-build-depends-bwa-dummy (from .../sbuild-build-depends-bwa-dummy.deb) ...
+Setting up libpipeline1 (1.2.0-5) ...
+Setting up libpcre3 (8.12-4) ...
+Setting up libglib2.0-0 (2.28.8-1) ...
+No schema files found: doing nothing.
+Setting up libxml2 (2.7.8.dfsg-5) ...
+Setting up libcroco3 (0.6.2-2) ...
+Setting up libunistring0 (0.9.3-5) ...
+Setting up groff-base (1.21-6) ...
+Setting up man-db (2.6.0.2-3) ...
Building database of manual pages ...
-Setting up libmagic1 (5.04-5) ...
-Setting up file (5.04-5) ...
-Setting up gettext-base (0.18.1.1-3) ...
-Setting up libpcre3 (8.02-1.1) ...
-Setting up libxml2 (2.7.8.dfsg-2) ...
+Setting up libmagic1 (5.09-2) ...
+Setting up file (5.09-2) ...
+Setting up gettext-base (0.18.1.1-5) ...
Setting up html2text (1.3.2a-15) ...
-Setting up libglib2.0-0 (2.24.2-1) ...
-Setting up libcroco3 (0.6.2-1) ...
-Setting up libunistring0 (0.9.3-3) ...
-Setting up gettext (0.18.1.1-3) ...
+Setting up gettext (0.18.1.1-5) ...
Setting up intltool-debian (0.35.0+20060710.1) ...
Setting up po-debconf (1.0.16+nmu1) ...
-Setting up debhelper (8.1.0) ...
-Setting up cdbs (0.4.89) ...
+Setting up debhelper (8.9.9) ...
Setting up zlib1g-dev (1:1.2.3.4.dfsg-3) ...
-Removing negative dependencies:
-Reading package lists...
-Building dependency tree...
-Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
-Checking correctness of dependencies...
-Kernel: Linux 2.6.32-trunk-vserver-amd64 amd64 (x86_64)
-Toolchain package versions: binutils_2.20.1-16 dpkg-dev_1.15.8.10 g++-4.4_4.4.5-10 gcc-4.4_4.4.5-10 libc6-dev_2.11.2-11 libstdc++6_4.4.5-10 libstdc++6-4.4-dev_4.4.5-10 linux-libc-dev_2.6.32-30
-Package versions: apt_0.8.10.3 base-files_6.0 base-passwd_3.5.22 bash_4.1-3 binutils_2.20.1-16 bsdmainutils_8.2.2 bsdutils_1:2.17.2-9 build-essential_11.5 bzip2_1.0.5-6 cdbs_0.4.89 coreutils_8.5-1 cpp_4:4.4.5-2 cpp-4.4_4.4.5-10 dash_0.5.5.1-7.4 debconf_1.5.38 debconf-i18n_1.5.38 debfoster_2.7-1.1 debhelper_8.1.0 debian-archive-keyring_2010.08.28 debianutils_3.4.3 diffutils_1:3.0-1 dpkg_1.15.8.10 dpkg-dev_1.15.8.10 e2fslibs_1.41.12-2 e2fsprogs_1.41.12-2 fakeroot_1.14.5-1 file_5.04-5 findutils_4.4.2-1+b1 g++_4:4.4.5-2 g++-4.4_4.4.5-10 gcc_4:4.4.5-2 gcc-4.4_4.4.5-10 gcc-4.4-base_4.4.5-10 gettext_0.18.1.1-3 gettext-base_0.18.1.1-3 gnupg_1.4.10-4 gpgv_1.4.10-4 grep_2.6.3-3 groff-base_1.20.1-10 gzip_1.3.12-9 hostname_3.05 html2text_1.3.2a-15 initscripts_2.88dsf-13.1 insserv_1.14.0-2 intltool-debian_0.35.0+20060710.1 libacl1_2.2.49-4 libattr1_1:2.4.44-2 libblkid1_2.17.2-9 libbz2-1.0_1.0.5-6 libc-bin_2.11.2-11 libc-dev-bin_2.11.2-11 libc6_2.11.2-11 libc6-dev_2.11.2-11 libcomerr2_1.41.12-2 libcroco3_0.6.2-1 libdb4.7_4.7.25-12 libdb4.8_4.8.30-4 libdpkg-perl_1.15.8.10 libgc1c2_1:6.8-1.2 libgcc1_1:4.4.5-10 libgdbm3_1.8.3-9 libglib2.0-0_2.24.2-1 libgmp3c2_2:4.3.2+dfsg-1 libgomp1_4.4.5-10 liblocale-gettext-perl_1.05-6 liblzma2_5.0.0-2 libmagic1_5.04-5 libmpfr4_3.0.0-2 libncurses5_5.7+20100313-5 libpam-modules_1.1.1-6.1 libpam-runtime_1.1.1-6.1 libpam0g_1.1.1-6.1 libpcre3_8.02-1.1 libreadline6_6.1-3 libselinux1_2.0.96-1 libsepol1_2.0.42-1 libslang2_2.2.2-4 libss2_1.41.12-2 libstdc++6_4.4.5-10 libstdc++6-4.4-dev_4.4.5-10 libtext-charwidth-perl_0.04-6 libtext-iconv-perl_1.7-2 libtext-wrapi18n-perl_0.06-7 libtimedate-perl_1.2000-1 libunistring0_0.9.3-3 libusb-0.1-4_2:0.1.12-17 libuuid1_2.17.2-9 libxml2_2.7.8.dfsg-2 linux-libc-dev_2.6.32-30 login_1:4.1.4.2+svn3283-2 lsb-base_3.2-27 make_3.81-8 man-db_2.5.7-8 mawk_1.3.3-15 mount_2.17.2-9 ncurses-base_5.7+20100313-5 ncurses-bin_5.7+20100313-5 passwd_1:4.1.4.2+svn3283-2 patch_2.6-3 perl_5.10.1-17 perl-base_5.10.1-17 perl-modules_5.10.1-17 po-debconf_1.0.16+nmu1 readline-common_6.1-3 sed_4.2.1-8 sensible-utils_0.0.6 sysv-rc_2.88dsf-13.1 sysvinit_2.88dsf-13.1 sysvinit-utils_2.88dsf-13.1 tar_1.25-3 tzdata_2011a-1 util-linux_2.17.2-9 xz-utils_5.0.0-2 zlib1g_1:1.2.3.4.dfsg-3 zlib1g-dev_1:1.2.3.4.dfsg-3
+Setting up sbuild-build-depends-bwa-dummy (0.invalid.0) ...
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Build environment │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+Kernel: Linux 2.6.39-bpo.2-amd64 amd64 (x86_64)
+Toolchain package versions: binutils_2.21.90.20111025-1 dpkg-dev_1.16.1.1 g++-4.6_4.6.2-4 gcc-4.6_4.6.2-4 libc6-dev_2.13-21 libstdc++6_4.6.2-4 libstdc++6-4.6-dev_4.6.2-4 linux-libc-dev_3.0.0-6
+Package versions: apt_0.8.15.9 base-files_6.5 base-passwd_3.5.23 bash_4.1-3 binutils_2.21.90.20111025-1 bsdmainutils_8.2.3 bsdutils_1:2.19.1-5 build-essential_11.5 bzip2_1.0.5-7 coreutils_8.13-3 cpp_4:4.6.1-3 cpp-4.6_4.6.2-4 dash_0.5.7-2 debconf_1.5.41 debfoster_2.7-1.1 debhelper_8.9.9 debian-archive-keyring_2010.08.28 debianutils_4.0.4 diffutils_1:3.2-1 dpkg_1.16.1.1 dpkg-dev_1.16.1.1 e2fslibs_1.42~WIP-2011-10-16-1 e2fsprogs_1.42~WIP-2011-10-16-1 fakeroot_1.18.1-1 file_5.09-2 findutils_4.4.2-1+b1 g++_4:4.6.1-3 g++-4.6_4.6.2-4 gcc_4:4.6.1-3 gcc-4.6_4.6.2-4 gcc-4.6-base_4.6.2-4 gettext_0.18.1.1-5 gettext-base_0.18.1.1-5 gnupg_1.4.11-3 gpgv_1.4.11-3 grep_2.9-2 groff-base_1.21-6 gzip_1.4-2 hostname_3.06 html2text_1.3.2a-15 initscripts_2.88dsf-13.13 insserv_1.14.0-2.1 intltool-debian_0.35.0+20060710.1 libacl1_2.2.51-4 libattr1_1:2.4.46-3 libblkid1_2.19.1-5 libbz2-1.0_1.0.5-7 libc-bin_2.13-21 libc-dev-bin_2.13-21 libc6_2.13-21 libc6-dev_2.13-21 libclass-isa-perl_0.36-2 libcomerr2_1.42~WIP-2011-10-16-1 libcroco3_0.6.2-2 libdb5.1_5.1.25-11 libdpkg-perl_1.16.1.1 libgc1c2_1:7.1-8 libgcc1_1:4.6.2-4 libgdbm3_1.8.3-10 libglib2.0-0_2.28.8-1 libgmp10_2:5.0.2+dfsg-2 libgomp1_4.6.2-4 libgpm2_1.20.4-4 liblzma2_5.1.1alpha+20110809-2 liblzma5_5.1.1alpha+20110809-3 libmagic1_5.09-2 libmount1_2.19.1-5 libmpc2_0.9-4 libmpfr4_3.1.0-3 libncurses5_5.9-4 libpam-modules_1.1.3-6 libpam-modules-bin_1.1.3-6 libpam-runtime_1.1.3-6 libpam0g_1.1.3-6 libpcre3_8.12-4 libpipeline1_1.2.0-5 libpng12-0_1.2.46-3 libpod-plainer-perl_1.03-1 libquadmath0_4.6.2-4 libreadline6_6.2-7 libselinux1_2.1.0-4 libsepol1_2.1.0-1.1 libslang2_2.2.4-3 libss2_1.42~WIP-2011-10-16-1 libstdc++6_4.6.2-4 libstdc++6-4.6-dev_4.6.2-4 libswitch-perl_2.16-2 libtimedate-perl_1.2000-1 libtinfo5_5.9-4 libunistring0_0.9.3-5 libusb-0.1-4_2:0.1.12-19 libuuid1_2.19.1-5 libxml2_2.7.8.dfsg-5 linux-libc-dev_3.0.0-6 login_1:4.1.4.2+svn3283-3 lsb-base_3.2-28 make_3.81-8.1 man-db_2.6.0.2-3 mawk_1.3.3-16 mount_2.19.1-5 multiarch-support_2.13-21 ncurses-base_5.9-4 ncurses-bin_5.9-4 passwd_1:4.1.4.2+svn3283-3 patch_2.6.1-2 perl_5.14.2-3 perl-base_5.14.2-3 perl-modules_5.14.2-3 po-debconf_1.0.16+nmu1 readline-common_6.2-7 sbuild-build-depends-bwa-dummy_0.invalid.0 sbuild-build-depends-core-dummy_0.invalid.0 sed_4.2.1-9 sensible-utils_0.0.6 sysv-rc_2.88dsf-13.13 sysvinit_2.88dsf-13.13 sysvinit-utils_2.88dsf-13.13 tar_1.26-3 tzdata_2011n-1 util-linux_2.19.1-5 xz-utils_5.1.1alpha+20110809-3 zlib1g_1:1.2.3.4.dfsg-3 zlib1g-dev_1:1.2.3.4.dfsg-3
┌──────────────────────────────────────────────────────────────────────────────┐
│ Build │
@@ -199,142 +164,192 @@ Package versions: apt_0.8.10.3 base-files_6.0 base-passwd_3.5.22 bash_4.1-3 binu
Unpack source
─────────────
-dpkg-source: warning: extracting unsigned source package (bwa_0.5.9-1.dsc)
-dpkg-source: info: extracting bwa in bwa-0.5.9
-dpkg-source: info: unpacking bwa_0.5.9.orig.tar.bz2
-dpkg-source: info: unpacking bwa_0.5.9-1.debian.tar.gz
+dpkg-source: warning: extracting unsigned source package (bwa_0.5.10-1.dsc)
+dpkg-source: info: extracting bwa in bwa-0.5.10
+dpkg-source: info: unpacking bwa_0.5.10.orig.tar.bz2
+dpkg-source: info: unpacking bwa_0.5.10-1.debian.tar.gz
Check disc space
────────────────
+Sufficient free space for build
+
+User Environment
+────────────────
+
+HOME=/sbuild-nonexistent
+LOGNAME=charles
+PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
+SCHROOT_CHROOT_NAME=sid-amd64-sbuild
+SCHROOT_COMMAND=env
+SCHROOT_GID=1000
+SCHROOT_GROUP=charles
+SCHROOT_SESSION_ID=sid-amd64-sbuild-bb9afc54-fb25-4ce3-9c23-5dbd55edc8e0
+SCHROOT_UID=31051
+SCHROOT_USER=charles
+SHELL=/bin/sh
+TERM=xterm
+USER=charles
+USERNAME=charles
dpkg-buildpackage
─────────────────
-dpkg-buildpackage: export CFLAGS from dpkg-buildflags (origin: vendor): -g -O2
-dpkg-buildpackage: export CPPFLAGS from dpkg-buildflags (origin: vendor):
-dpkg-buildpackage: export CXXFLAGS from dpkg-buildflags (origin: vendor): -g -O2
-dpkg-buildpackage: export FFLAGS from dpkg-buildflags (origin: vendor): -g -O2
-dpkg-buildpackage: export LDFLAGS from dpkg-buildflags (origin: vendor):
dpkg-buildpackage: source package bwa
-dpkg-buildpackage: source version 0.5.9-1
+dpkg-buildpackage: source version 0.5.10-1
dpkg-buildpackage: source changed by Charles Plessy <plessy at debian.org>
- dpkg-source --before-build bwa-0.5.9
+ dpkg-source --before-build bwa-0.5.10
dpkg-buildpackage: host architecture amd64
fakeroot debian/rules clean
-test -x debian/rules
-dh_testroot
-rm -f debian/stamp-makefile-build debian/stamp-makefile-install
-/usr/bin/make -C . CFLAGS="-g -O2 -g -Wall -O2" CXXFLAGS="-g -O2 -g -Wall -O2" CPPFLAGS="" LDFLAGS="" -k clean
-make[1]: Entering directory `/build/charles-bwa_0.5.9-1-amd64-5EGPGI/bwa-0.5.9'
-make[2]: Entering directory `/build/charles-bwa_0.5.9-1-amd64-5EGPGI/bwa-0.5.9'
+dh clean
+ dh_testdir
+ dh_auto_clean
+make[1]: Entering directory `/«PKGBUILDDIR»'
+make[2]: Entering directory `/«PKGBUILDDIR»'
rm -f gmon.out *.o a.out bwa *~ *.a
-make[2]: Leaving directory `/build/charles-bwa_0.5.9-1-amd64-5EGPGI/bwa-0.5.9'
-make[2]: Entering directory `/build/charles-bwa_0.5.9-1-amd64-5EGPGI/bwa-0.5.9/bwt_gen'
+make[2]: Leaving directory `/«PKGBUILDDIR»'
+make[2]: Entering directory `/«PKGBUILDDIR»/bwt_gen'
rm -f gmon.out *.o a.out *~ *.a
-make[2]: Leaving directory `/build/charles-bwa_0.5.9-1-amd64-5EGPGI/bwa-0.5.9/bwt_gen'
-make[1]: Leaving directory `/build/charles-bwa_0.5.9-1-amd64-5EGPGI/bwa-0.5.9'
-dh_clean
- dpkg-source -b bwa-0.5.9
+make[2]: Leaving directory `/«PKGBUILDDIR»/bwt_gen'
+make[1]: Leaving directory `/«PKGBUILDDIR»'
+ dh_clean
+ dpkg-source -b bwa-0.5.10
dpkg-source: info: using source format `3.0 (quilt)'
-dpkg-source: info: building bwa using existing ./bwa_0.5.9.orig.tar.bz2
-dpkg-source: info: building bwa in bwa_0.5.9-1.debian.tar.gz
-dpkg-source: info: building bwa in bwa_0.5.9-1.dsc
+dpkg-source: info: building bwa using existing ./bwa_0.5.10.orig.tar.bz2
+dpkg-source: info: building bwa in bwa_0.5.10-1.debian.tar.gz
+dpkg-source: info: building bwa in bwa_0.5.10-1.dsc
debian/rules build
-test -x debian/rules
-mkdir -p "."
-/usr/bin/make -C . CFLAGS="-g -O2 -g -Wall -O2" CXXFLAGS="-g -O2 -g -Wall -O2" CPPFLAGS="" LDFLAGS=""
-make[1]: Entering directory `/build/charles-bwa_0.5.9-1-amd64-5EGPGI/bwa-0.5.9'
-make[2]: Entering directory `/build/charles-bwa_0.5.9-1-amd64-5EGPGI/bwa-0.5.9'
+dh build
+ dh_testdir
+ dh_auto_configure
+ dh_auto_build
+make[1]: Entering directory `/«PKGBUILDDIR»'
+make[2]: Entering directory `/«PKGBUILDDIR»'
make[2]: Nothing to be done for `lib'.
-make[2]: Leaving directory `/build/charles-bwa_0.5.9-1-amd64-5EGPGI/bwa-0.5.9'
-make[2]: Entering directory `/build/charles-bwa_0.5.9-1-amd64-5EGPGI/bwa-0.5.9/bwt_gen'
-gcc -c -g -O2 -g -Wall -O2 -DHAVE_PTHREAD bwt_gen.c -o bwt_gen.o
-gcc -c -g -O2 -g -Wall -O2 -DHAVE_PTHREAD QSufSort.c -o QSufSort.o
-ar -cru libbwtgen.a bwt_gen.o QSufSort.o
-make[2]: Leaving directory `/build/charles-bwa_0.5.9-1-amd64-5EGPGI/bwa-0.5.9/bwt_gen'
-gcc -c -g -O2 -g -Wall -O2 -DHAVE_PTHREAD utils.c -o utils.o
-gcc -c -g -O2 -g -Wall -O2 -DHAVE_PTHREAD bwt.c -o bwt.o
-gcc -c -g -O2 -g -Wall -O2 -DHAVE_PTHREAD bwtio.c -o bwtio.o
-gcc -c -g -O2 -g -Wall -O2 -DHAVE_PTHREAD bwtaln.c -o bwtaln.o
-gcc -c -g -O2 -g -Wall -O2 -DHAVE_PTHREAD bwtgap.c -o bwtgap.o
-gcc -c -g -O2 -g -Wall -O2 -DHAVE_PTHREAD is.c -o is.o
-gcc -c -g -O2 -g -Wall -O2 -DHAVE_PTHREAD bntseq.c -o bntseq.o
-gcc -c -g -O2 -g -Wall -O2 -DHAVE_PTHREAD bwtmisc.c -o bwtmisc.o
-gcc -c -g -O2 -g -Wall -O2 -DHAVE_PTHREAD bwtindex.c -o bwtindex.o
-gcc -c -g -O2 -g -Wall -O2 -DHAVE_PTHREAD stdaln.c -o stdaln.o
-gcc -c -g -O2 -g -Wall -O2 -DHAVE_PTHREAD simple_dp.c -o simple_dp.o
-gcc -c -g -O2 -g -Wall -O2 -DHAVE_PTHREAD bwaseqio.c -o bwaseqio.o
-gcc -c -g -O2 -g -Wall -O2 -DHAVE_PTHREAD bwase.c -o bwase.o
-gcc -c -g -O2 -g -Wall -O2 -DHAVE_PTHREAD bwape.c -o bwape.o
-gcc -c -g -O2 -g -Wall -O2 -DHAVE_PTHREAD kstring.c -o kstring.o
-gcc -c -g -O2 -g -Wall -O2 -DHAVE_PTHREAD cs2nt.c -o cs2nt.o
-gcc -c -g -O2 -g -Wall -O2 -DHAVE_PTHREAD bwtsw2_core.c -o bwtsw2_core.o
-gcc -c -g -O2 -g -Wall -O2 -DHAVE_PTHREAD bwtsw2_main.c -o bwtsw2_main.o
-gcc -c -g -O2 -g -Wall -O2 -DHAVE_PTHREAD bwtsw2_aux.c -o bwtsw2_aux.o
-gcc -c -g -O2 -g -Wall -O2 -DHAVE_PTHREAD bwt_lite.c -o bwt_lite.o
-gcc -c -g -O2 -g -Wall -O2 -DHAVE_PTHREAD bwtsw2_chain.c -o bwtsw2_chain.o
-gcc -c -g -O2 -g -Wall -O2 -DHAVE_PTHREAD bamlite.c -o bamlite.o
-gcc -c -g -O2 -g -Wall -O2 -DHAVE_PTHREAD main.c -o main.o
-gcc -g -O2 -g -Wall -O2 -DHAVE_PTHREAD utils.o bwt.o bwtio.o bwtaln.o bwtgap.o is.o bntseq.o bwtmisc.o bwtindex.o stdaln.o simple_dp.o bwaseqio.o bwase.o bwape.o kstring.o cs2nt.o bwtsw2_core.o bwtsw2_main.o bwtsw2_aux.o bwt_lite.o bwtsw2_chain.o bamlite.o main.o -o bwa -lm -lz -lpthread -Lbwt_gen -lbwtgen
-make[1]: Leaving directory `/build/charles-bwa_0.5.9-1-amd64-5EGPGI/bwa-0.5.9'
-touch debian/stamp-makefile-build
-DEB_MAKE_CHECK_TARGET unset, not running checks
+make[2]: Leaving directory `/«PKGBUILDDIR»'
+make[2]: Entering directory `/«PKGBUILDDIR»/bwt_gen'
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD bwt_gen.c -o bwt_gen.o
+bwt_gen.c: In function 'BWTIncBuildRelativeRank':
+bwt_gen.c:824:15: warning: variable 'oldInverseSa0RelativeRank' set but not used [-Wunused-but-set-variable]
+bwt_gen.c: In function 'BWTIncMergeBwt':
+bwt_gen.c:899:15: warning: variable 'bitsInWordMinusBitPerChar' set but not used [-Wunused-but-set-variable]
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD QSufSort.c -o QSufSort.o
+QSufSort.c: In function 'QSufSortSuffixSort':
+QSufSort.c:89:6: warning: variable 'maxNumInputSymbol' set but not used [-Wunused-but-set-variable]
+ar -scru libbwtgen.a bwt_gen.o QSufSort.o
+make[2]: Leaving directory `/«PKGBUILDDIR»/bwt_gen'
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD utils.c -o utils.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD bwt.c -o bwt.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD bwtio.c -o bwtio.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD bwtaln.c -o bwtaln.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD bwtgap.c -o bwtgap.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD is.c -o is.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD bntseq.c -o bntseq.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD bwtmisc.c -o bwtmisc.o
+bwtmisc.c: In function 'bwa_pac_rev_core':
+bwtmisc.c:163:20: warning: variable 'j' set but not used [-Wunused-but-set-variable]
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD bwtindex.c -o bwtindex.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD stdaln.c -o stdaln.o
+stdaln.c: In function 'aln_local_core':
+stdaln.c:545:25: warning: variable 'b' set but not used [-Wunused-but-set-variable]
+stdaln.c: In function 'aln_extend_core':
+stdaln.c:865:16: warning: variable 'tmp_len' set but not used [-Wunused-but-set-variable]
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD simple_dp.c -o simple_dp.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD bwaseqio.c -o bwaseqio.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD bwase.c -o bwase.o
+bwase.c: In function 'bwa_aln2seq_core':
+bwase.c:75:15: warning: variable 'k' set but not used [-Wunused-but-set-variable]
+bwase.c: In function 'bwa_print_sam1':
+bwase.c:452:17: warning: variable 'm_is_N' set but not used [-Wunused-but-set-variable]
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD bwape.c -o bwape.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD kstring.c -o kstring.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD cs2nt.c -o cs2nt.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD bwtsw2_core.c -o bwtsw2_core.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD bwtsw2_main.c -o bwtsw2_main.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD bwtsw2_aux.c -o bwtsw2_aux.o
+bwtsw2_aux.c: In function 'gen_cigar':
+bwtsw2_aux.c:193:7: warning: variable 'score' set but not used [-Wunused-but-set-variable]
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD bwt_lite.c -o bwt_lite.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD bwtsw2_chain.c -o bwtsw2_chain.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD bamlite.c -o bamlite.o
+gcc -c -g -Wall -O2 -DHAVE_PTHREAD main.c -o main.o
+gcc -g -Wall -O2 -DHAVE_PTHREAD utils.o bwt.o bwtio.o bwtaln.o bwtgap.o is.o bntseq.o bwtmisc.o bwtindex.o stdaln.o simple_dp.o bwaseqio.o bwase.o bwape.o kstring.o cs2nt.o bwtsw2_core.o bwtsw2_main.o bwtsw2_aux.o bwt_lite.o bwtsw2_chain.o bamlite.o main.o -o bwa -lm -lz -lpthread -Lbwt_gen -lbwtgen
+make[1]: Leaving directory `/«PKGBUILDDIR»'
+ dh_auto_test
fakeroot debian/rules binary
-test -x debian/rules
-dh_testroot
-dh_prep
-dh_installdirs -A
-mkdir -p "."
-DEB_MAKE_CHECK_TARGET unset, not running checks
-DEB_MAKE_INSTALL_TARGET unset, skipping default makefile.mk common-install target
-Adding cdbs dependencies to debian/bwa.substvars
-dh_installdirs -pbwa
-dh_installdocs -pbwa ./README ./NEWS
-dh_installexamples -pbwa
-dh_installman -pbwa
-dh_installinfo -pbwa
-dh_installmenu -pbwa
-dh_installcron -pbwa
-dh_installinit -pbwa
-dh_installdebconf -pbwa
-dh_installemacsen -pbwa
-dh_installcatalogs -pbwa
-dh_installpam -pbwa
-dh_installlogrotate -pbwa
-dh_installlogcheck -pbwa
-dh_installchangelogs -pbwa ./ChangeLog
-dh_installudev -pbwa
-dh_lintian -pbwa
-dh_install -pbwa
-dh_link -pbwa
-dh_installmime -pbwa
-dh_strip -pbwa
-dh_compress -pbwa
-dh_fixperms -pbwa
-dh_makeshlibs -pbwa
-dh_installdeb -pbwa
-dh_perl -pbwa
-dh_shlibdeps -pbwa
-dh_gencontrol -pbwa
+dh binary
+ dh_testroot
+ dh_prep
+ dh_installdirs
+ dh_auto_install
+ dh_install
+ dh_installdocs
+ dh_installchangelogs
+ dh_installexamples
+ dh_installman
+ dh_installcatalogs
+ dh_installcron
+ dh_installdebconf
+ dh_installemacsen
+ dh_installifupdown
+ dh_installinfo
+ dh_installinit
+ dh_installmenu
+ dh_installmime
+ dh_installmodules
+ dh_installlogcheck
+ dh_installlogrotate
+ dh_installpam
+ dh_installppp
+ dh_installudev
+ dh_installwm
+ dh_installxfonts
+ dh_installgsettings
+ dh_bugfiles
+ dh_ucf
+ dh_lintian
+ dh_gconf
+ dh_icons
+ dh_perl
+ dh_usrlocal
+ dh_link
+ dh_compress
+ dh_fixperms
+ dh_strip
+ dh_makeshlibs
+ dh_shlibdeps
+ dh_installdeb
+ dh_gencontrol
dpkg-gencontrol: warning: package bwa: unused substitution variable ${perl:Depends}
-dh_md5sums -pbwa
-dh_builddeb -pbwa
-dpkg-deb: building package `bwa' in `../bwa_0.5.9-1_amd64.deb'.
- dpkg-genchanges >../bwa_0.5.9-1_amd64.changes
+ dh_md5sums
+ dh_builddeb
+dpkg-deb: building package `bwa' in `../bwa_0.5.10-1_amd64.deb'.
+ dpkg-genchanges >../bwa_0.5.10-1_amd64.changes
dpkg-genchanges: including full source code in upload
- dpkg-source --after-build bwa-0.5.9
+ dpkg-source --after-build bwa-0.5.10
dpkg-buildpackage: full upload (original source is included)
────────────────────────────────────────────────────────────────────────────────
-Build finished at 20110208-1616
+Build finished at 20111114-1317
+
+Finished
+────────
+
+I: Built successfully
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Changes │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+
+bwa_0.5.10-1_amd64.changes:
+───────────────────────────
-bwa_0.5.9-1_amd64.changes:
Format: 1.8
-Date: Tue, 08 Feb 2011 16:11:12 +0900
+Date: Mon, 14 Nov 2011 13:12:50 +0900
Source: bwa
Binary: bwa
Architecture: source amd64
-Version: 0.5.9-1
+Version: 0.5.10-1
Distribution: unstable
Urgency: low
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
@@ -342,46 +357,47 @@ Changed-By: Charles Plessy <plessy at debian.org>
Description:
bwa - Burrows-Wheeler Aligner
Changes:
- bwa (0.5.9-1) unstable; urgency=low
+ bwa (0.5.10-1) unstable; urgency=low
.
- * New usptream release
- - Upstream moved to GitHub (debian/upstream-metadata.yaml).
- - Checked copyright; one file was removed (debian/copyright).
- * Migrated the Debian source package to Git (debian/control).
- * Use Debhelper 8 (debian/control, debian/compat).
+ [a01f6ca] New upstream release.
+ [6d7bc7f] Conforms with Debian Policy version 3.9.2.
+ [125c73d] Corrected Vcs-Git URL.
+ [37f43c9] Normalised machine-readable copyright file with config-edit.
+ [4e2e0d0] Distribute xa2multi.pl in ‘usr/share/bwa’.
+ [b106d64] Removed redundant ChangeLog file, already installed by Debhelper.
Checksums-Sha1:
- 19721983d0ce081dc65755d718f25f8e33a7437b 1008 bwa_0.5.9-1.dsc
- dc5d7ddd54b4f972c4e3667ce10449e1d428b419 113890 bwa_0.5.9.orig.tar.bz2
- 3616c0f948cff5fe663524c010816bd3ed3e1b88 3651 bwa_0.5.9-1.debian.tar.gz
- 6c1c7e9ba579c5a119b664d00ff6fb9c1f0b8b87 138154 bwa_0.5.9-1_amd64.deb
+ 797e8011aafd275766c9025c7a99e026f8f58555 1043 bwa_0.5.10-1.dsc
+ 22d7dc972b1037dc9ce3973a21b578e2bd755240 119829 bwa_0.5.10.orig.tar.bz2
+ d4768836209cf6951efd93d7fe8ffd252d498ae0 4113 bwa_0.5.10-1.debian.tar.gz
+ c4f09306a15dba62c9accd6fa5a83bf937b6bfb5 138106 bwa_0.5.10-1_amd64.deb
Checksums-Sha256:
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Files:
- 3b029a02985359cc29d174777ef43683 1008 science optional bwa_0.5.9-1.dsc
- 27facf40c92e9af40def844b245ed7db 113890 science optional bwa_0.5.9.orig.tar.bz2
- c4fb66e06515643eba1584d5086ba0c2 3651 science optional bwa_0.5.9-1.debian.tar.gz
- e0783556e91db63a6eaab6e6f26fb5c9 138154 science optional bwa_0.5.9-1_amd64.deb
+ 0a8853669f3f20f79fe1dcb0f2d911d5 1043 science optional bwa_0.5.10-1.dsc
+ 04962f916f761dc259d9fb2452b46c5d 119829 science optional bwa_0.5.10.orig.tar.bz2
+ a9b236923538af9a1e6f21160524c0d1 4113 science optional bwa_0.5.10-1.debian.tar.gz
+ 966a52c44cabe3db61f2ea14f223ecb5 138106 science optional bwa_0.5.10-1_amd64.deb
┌──────────────────────────────────────────────────────────────────────────────┐
│ Package contents │
└──────────────────────────────────────────────────────────────────────────────┘
-bwa_0.5.9-1_amd64.deb
-─────────────────────
+bwa_0.5.10-1_amd64.deb
+──────────────────────
new debian package, version 2.0.
- size 138154 bytes: control archive= 975 bytes.
- 774 bytes, 17 lines control
- 615 bytes, 10 lines md5sums
+ size 138106 bytes: control archive= 992 bytes.
+ 775 bytes, 17 lines control
+ 610 bytes, 10 lines md5sums
Package: bwa
- Version: 0.5.9-1
+ Version: 0.5.10-1
Architecture: amd64
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
- Installed-Size: 312
+ Installed-Size: 275
Depends: libc6 (>= 2.7), zlib1g (>= 1:1.1.4)
Suggests: samtools
Section: science
@@ -395,39 +411,57 @@ bwa_0.5.9-1_amd64.deb
to around 100 kbp. Both algorithms do gapped alignment. They are usually more
accurate and faster on queries with low error rates.
-drwxr-xr-x root/root 0 2011-02-08 16:16 ./
-drwxr-xr-x root/root 0 2011-02-08 16:16 ./usr/
-drwxr-xr-x root/root 0 2011-02-08 16:16 ./usr/bin/
--rwxr-xr-x root/root 195688 2011-02-08 16:16 ./usr/bin/bwa
-drwxr-xr-x root/root 0 2011-02-08 16:16 ./usr/share/
-drwxr-xr-x root/root 0 2011-02-08 16:16 ./usr/share/doc/
-drwxr-xr-x root/root 0 2011-02-08 16:16 ./usr/share/doc/bwa/
--rw-r--r-- root/root 881 2011-02-08 16:11 ./usr/share/doc/bwa/changelog.Debian.gz
--rw-r--r-- root/root 634 2011-01-25 09:00 ./usr/share/doc/bwa/README
--rw-r--r-- root/root 17912 2011-01-25 09:00 ./usr/share/doc/bwa/changelog.gz
--rw-r--r-- root/root 17912 2011-01-25 09:00 ./usr/share/doc/bwa/ChangeLog.gz
--rw-r--r-- root/root 5857 2011-01-25 09:00 ./usr/share/doc/bwa/NEWS.gz
--rw-r--r-- root/root 2676 2011-02-08 16:09 ./usr/share/doc/bwa/copyright
-drwxr-xr-x root/root 0 2011-02-08 16:16 ./usr/share/bwa/
--rwxr-xr-x root/root 3176 2011-01-25 09:00 ./usr/share/bwa/solid2fastq.pl
--rwxr-xr-x root/root 616 2011-01-25 09:00 ./usr/share/bwa/qualfa2fq.pl
-drwxr-xr-x root/root 0 2011-02-08 16:16 ./usr/share/man/
-drwxr-xr-x root/root 0 2011-02-08 16:16 ./usr/share/man/man1/
--rw-r--r-- root/root 7554 2011-02-08 16:16 ./usr/share/man/man1/bwa.1.gz
+drwxr-xr-x root/root 0 2011-11-14 13:17 ./
+drwxr-xr-x root/root 0 2011-11-14 13:17 ./usr/
+drwxr-xr-x root/root 0 2011-11-14 13:17 ./usr/bin/
+-rwxr-xr-x root/root 199752 2011-11-14 13:17 ./usr/bin/bwa
+drwxr-xr-x root/root 0 2011-11-14 13:17 ./usr/share/
+drwxr-xr-x root/root 0 2011-11-14 13:17 ./usr/share/man/
+drwxr-xr-x root/root 0 2011-11-14 13:17 ./usr/share/man/man1/
+-rw-r--r-- root/root 7554 2011-11-14 13:17 ./usr/share/man/man1/bwa.1.gz
+drwxr-xr-x root/root 0 2011-11-14 13:17 ./usr/share/bwa/
+-rwxr-xr-x root/root 616 2011-11-13 10:07 ./usr/share/bwa/qualfa2fq.pl
+-rwxr-xr-x root/root 3176 2011-11-13 10:07 ./usr/share/bwa/solid2fastq.pl
+-rwxr-xr-x root/root 730 2011-11-13 10:07 ./usr/share/bwa/xa2multi.pl
+drwxr-xr-x root/root 0 2011-11-14 13:17 ./usr/share/doc/
+drwxr-xr-x root/root 0 2011-11-14 13:17 ./usr/share/doc/bwa/
+-rw-r--r-- root/root 17912 2011-11-13 10:07 ./usr/share/doc/bwa/changelog.gz
+-rw-r--r-- root/root 5857 2011-11-13 10:08 ./usr/share/doc/bwa/NEWS.gz
+-rw-r--r-- root/root 2740 2011-11-14 13:09 ./usr/share/doc/bwa/copyright
+-rw-r--r-- root/root 634 2011-11-13 10:07 ./usr/share/doc/bwa/README
+-rw-r--r-- root/root 1159 2011-11-14 13:16 ./usr/share/doc/bwa/changelog.Debian.gz
┌──────────────────────────────────────────────────────────────────────────────┐
-│ Finished │
+│ Post Build │
└──────────────────────────────────────────────────────────────────────────────┘
-Built successfully
-────────────────────────────────────────────────────────────────────────────────
+
+lintian
+───────
+
+P: bwa source: unversioned-copyright-format-uri http://dep.debian.net/deps/dep5/
+W: bwa source: debian-watch-file-should-use-sf-redirector line 4
+W: bwa: manpage-has-errors-from-man usr/share/man/man1/bwa.1.gz around line 321: table wider than line width
+I: bwa: hyphen-used-as-minus-sign usr/share/man/man1/bwa.1.gz:7
+I: bwa: hyphen-used-as-minus-sign usr/share/man/man1/bwa.1.gz:49
+I: bwa: hyphen-used-as-minus-sign usr/share/man/man1/bwa.1.gz:82
+I: bwa: hyphen-used-as-minus-sign usr/share/man/man1/bwa.1.gz:83
+I: bwa: hyphen-used-as-minus-sign usr/share/man/man1/bwa.1.gz:84
+I: bwa: hyphen-used-as-minus-sign usr/share/man/man1/bwa.1.gz:108
+I: bwa: hyphen-used-as-minus-sign usr/share/man/man1/bwa.1.gz:109
+I: bwa: hyphen-used-as-minus-sign usr/share/man/man1/bwa.1.gz:120
+I: bwa: hyphen-used-as-minus-sign usr/share/man/man1/bwa.1.gz:178
+I: bwa: hyphen-used-as-minus-sign usr/share/man/man1/bwa.1.gz:179
+I: bwa: hyphen-used-as-minus-sign usr/share/man/man1/bwa.1.gz 10 more occurrences not shown
+
+I: Lintian run was successful.
┌──────────────────────────────────────────────────────────────────────────────┐
-│ Post Build │
+│ Cleanup │
└──────────────────────────────────────────────────────────────────────────────┘
-Purging /var/lib/schroot/mount/unstable-amd64-sbuild-eace34cd-8a4b-4eb3-a059-52a65b4217d1/build/charles-bwa_0.5.9-1-amd64-5EGPGI
+Purging /«BUILDDIR»
Reading package lists...
Building dependency tree...
Reading state information...
@@ -436,26 +470,22 @@ Reading package lists...
Building dependency tree...
Reading state information...
The following packages will be REMOVED:
- bsdmainutils* cdbs* debhelper* file* gettext* gettext-base* groff-base*
- html2text* intltool-debian* libcroco3* libglib2.0-0* libmagic1* libpcre3*
- libunistring0* libxml2* man-db* po-debconf* zlib1g-dev*
+ debhelper* file* gettext* gettext-base* groff-base* html2text*
+ intltool-debian* libcroco3* libglib2.0-0* libmagic1* libpcre3* libpipeline1*
+ libunistring0* libxml2* man-db* po-debconf* sbuild-build-depends-bwa-dummy*
+ zlib1g-dev*
0 upgraded, 0 newly installed, 18 to remove and 0 not upgraded.
-After this operation, 28.7 MB disk space will be freed.
-(Reading database ... 11498 files and directories currently installed.)
-Removing cdbs ...
+After this operation, 25.4 MB disk space will be freed.
+(Reading database ... 12058 files and directories currently installed.)
+Removing sbuild-build-depends-bwa-dummy ...
Removing debhelper ...
-Removing man-db ...
-Purging configuration files for man-db ...
-debconf: unable to initialize frontend: Dialog
-debconf: (TERM is not set, so the dialog frontend is not usable.)
-debconf: falling back to frontend: Readline
-Removing bsdmainutils ...
-Purging configuration files for bsdmainutils ...
Removing file ...
Removing po-debconf ...
Removing intltool-debian ...
Removing gettext ...
Removing gettext-base ...
+Removing man-db ...
+Purging configuration files for man-db ...
Removing groff-base ...
Purging configuration files for groff-base ...
Removing html2text ...
@@ -468,6 +498,8 @@ Removing libmagic1 ...
Purging configuration files for libmagic1 ...
Removing libpcre3 ...
Purging configuration files for libpcre3 ...
+Removing libpipeline1 ...
+Purging configuration files for libpipeline1 ...
Removing libunistring0 ...
Purging configuration files for libunistring0 ...
Removing libxml2 ...
@@ -479,17 +511,18 @@ Removing zlib1g-dev ...
└──────────────────────────────────────────────────────────────────────────────┘
Architecture: amd64
-Build-Space: 2996
-Build-Time: 15
+Build-Space: 3244
+Build-Time: 11
Distribution: unstable
-Install-Time: 20
-Job: bwa_0.5.9-1.dsc
+Install-Time: 22
+Job: bwa_0.5.10-1.dsc
+Lintian: pass
Package: bwa
-Package-Time: 45
-Source-Version: 0.5.9-1
-Space: 2996
+Package-Time: 38
+Source-Version: 0.5.10-1
+Space: 3244
Status: successful
-Version: 0.5.9-1
+Version: 0.5.10-1
────────────────────────────────────────────────────────────────────────────────
-Finished at 20110208-1616
-Build needed 00:00:45, 2996k disc space
+Finished at 20111114-1317
+Build needed 00:00:38, 3244k disc space
diff --git a/changes b/changes
index c53e76d..b956756 100644
--- a/changes
+++ b/changes
@@ -2,11 +2,11 @@
Hash: SHA256
Format: 1.8
-Date: Tue, 08 Feb 2011 16:11:12 +0900
+Date: Mon, 14 Nov 2011 13:12:50 +0900
Source: bwa
Binary: bwa
Architecture: source amd64
-Version: 0.5.9-1
+Version: 0.5.10-1
Distribution: unstable
Urgency: low
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
@@ -14,43 +14,44 @@ Changed-By: Charles Plessy <plessy at debian.org>
Description:
bwa - Burrows-Wheeler Aligner
Changes:
- bwa (0.5.9-1) unstable; urgency=low
+ bwa (0.5.10-1) unstable; urgency=low
.
- * New usptream release
- - Upstream moved to GitHub (debian/upstream-metadata.yaml).
- - Checked copyright; one file was removed (debian/copyright).
- * Migrated the Debian source package to Git (debian/control).
- * Use Debhelper 8 (debian/control, debian/compat).
+ [a01f6ca] New upstream release.
+ [6d7bc7f] Conforms with Debian Policy version 3.9.2.
+ [125c73d] Corrected Vcs-Git URL.
+ [37f43c9] Normalised machine-readable copyright file with config-edit.
+ [4e2e0d0] Distribute xa2multi.pl in ‘usr/share/bwa’.
+ [b106d64] Removed redundant ChangeLog file, already installed by Debhelper.
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+ 04962f916f761dc259d9fb2452b46c5d 119829 science optional bwa_0.5.10.orig.tar.bz2
+ a9b236923538af9a1e6f21160524c0d1 4113 science optional bwa_0.5.10-1.debian.tar.gz
+ 966a52c44cabe3db61f2ea14f223ecb5 138106 science optional bwa_0.5.10-1_amd64.deb
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diff --git a/dsc b/dsc
index d37dbf3..3286805 100644
--- a/dsc
+++ b/dsc
@@ -5,39 +5,41 @@ Format: 3.0 (quilt)
Source: bwa
Binary: bwa
Architecture: any
-Version: 0.5.9-1
+Version: 0.5.10-1
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-Uploaders: Charles Plessy <plessy at debian.org>
+Uploaders: Charles Plessy <plessy at debian.org>, Andreas Tille <tille at debian.org>
Dm-Upload-Allowed: yes
Homepage: http://bio-bwa.sourceforge.net/
-Standards-Version: 3.9.1
-Vcs-Browser: http://git.debian.org/?p=debian-med/bwa.git;a=shortlog;h=refs/heads/experimental
-Vcs-Git: git://git.debian.org/git/debian-med/bwa.git
-Build-Depends: cdbs, debhelper (>= 8), zlib1g-dev
+Standards-Version: 3.9.2
+Vcs-Browser: http://git.debian.org/?p=debian-med/bwa.git
+Vcs-Git: git://git.debian.org/debian-med/bwa.git
+Build-Depends: debhelper (>= 8), zlib1g-dev
+Package-List:
+ bwa deb science optional
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Files:
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- c4fb66e06515643eba1584d5086ba0c2 3651 bwa_0.5.9-1.debian.tar.gz
+ 04962f916f761dc259d9fb2452b46c5d 119829 bwa_0.5.10.orig.tar.bz2
+ a9b236923538af9a1e6f21160524c0d1 4113 bwa_0.5.10-1.debian.tar.gz
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--
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