[med-svn] [SCM] bwa branch, experimental-meta, updated. 198e3800ecea7176e8eb70c77254727ebb64a6db
Charles Plessy
plessy at debian.org
Mon Nov 14 11:05:44 UTC 2011
The following commit has been merged in the experimental-meta branch:
commit 198e3800ecea7176e8eb70c77254727ebb64a6db
Author: Charles Plessy <plessy at debian.org>
Date: Mon Nov 14 19:33:37 2011 +0900
Build logs for bwa_0.6.0-1_amd64.changes.
diff --git a/amd64.log b/amd64.log
index 57d8c5d..0537a68 100644
--- a/amd64.log
+++ b/amd64.log
@@ -1,21 +1,30 @@
-sbuild (Debian sbuild) 0.60.8 (12 Dec 2010) on anx178.gsc.riken.jp
+sbuild (Debian sbuild) 0.62.5 (13 Jul 2011) on anx191
╔══════════════════════════════════════════════════════════════════════════════╗
-║ bwa 0.5.9~rc-1 (amd64) 20 Jan 2011 21:46 ║
+║ bwa 0.6.0-1 (amd64) 14 Nov 2011 19:29 ║
╚══════════════════════════════════════════════════════════════════════════════╝
Package: bwa
-Version: 0.5.9~rc-1
-Source Version: 0.5.9~rc-1
+Version: 0.6.0-1
+Source Version: 0.6.0-1
+Distribution: unstable
Architecture: amd64
-Hit http://ftp.riken.jp unstable Release.gpg
-Ign http://ftp.riken.jp/Linux/debian/debian/ unstable/main Translation-en
-Hit http://ftp.riken.jp unstable Release
-Hit http://ftp.riken.jp unstable/main Sources/DiffIndex
-Hit http://ftp.riken.jp unstable/main amd64 Packages/DiffIndex
+
+I: NOTICE: Log filtering will replace 'build/bwa-DsC1CL/bwa-0.6.0' with '«PKGBUILDDIR»'
+I: NOTICE: Log filtering will replace 'build/bwa-DsC1CL' with '«BUILDDIR»'
+I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/sid-amd64-sbuild-a638d509-5b19-4d6e-bf69-2ce494596aed' with '«CHROOT»'
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Update chroot │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+Hit http://ftp.jp.debian.org sid InRelease
+Hit http://ftp.jp.debian.org sid/main amd64 Packages/DiffIndex
+Hit http://ftp.jp.debian.org sid/main TranslationIndex
Reading package lists...
Reading package lists...
Building dependency tree...
+Reading state information...
0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -26,181 +35,123 @@ Building dependency tree...
Local sources
─────────────
-bwa_0.5.9~rc-1.dsc exists in .; copying to chroot
+bwa_0.6.0-1.dsc exists in .; copying to chroot
Check arch
──────────
+Merged Build-Depends: build-essential, fakeroot
+Filtered Build-Depends: build-essential, fakeroot
+dpkg-deb: building package `sbuild-build-depends-core-dummy' in `/«BUILDDIR»/resolver-uq8zfI/apt_archive/sbuild-build-depends-core-dummy.deb'.
+OK
+Reading package lists...
┌──────────────────────────────────────────────────────────────────────────────┐
-│ Install core build dependencies (internal resolver) │
+│ Install core build dependencies (apt-based resolver) │
└──────────────────────────────────────────────────────────────────────────────┘
-Build-Depends: build-essential, fakeroot
-Checking for already installed dependencies...
-build-essential: already installed (11.5)
-fakeroot: already installed (1.14.5-1)
-Checking for dependency conflicts...
-Installing positive dependencies:
+Installing build dependencies
Reading package lists...
Building dependency tree...
+Reading state information...
+sbuild-build-depends-core-dummy is already the newest version.
0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
-Removing negative dependencies:
+Merged Build-Depends: base-files, base-passwd, bash, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, ncurses-base, ncurses-bin, perl-base, sed, login, sysvinit-utils, sysvinit, tar, bsdutils, mount, util-linux, libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 8.9.4~), zlib1g-dev
+Filtered Build-Depends: base-files, base-passwd, bash, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, ncurses-base, ncurses-bin, perl-base, sed, login, sysvinit-utils, sysvinit, tar, bsdutils, mount, util-linux, libc6-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 8.9.4~), zlib1g-dev
+dpkg-deb: building package `sbuild-build-depends-bwa-dummy' in `/«BUILDDIR»/resolver-co7OV6/apt_archive/sbuild-build-depends-bwa-dummy.deb'.
+OK
Reading package lists...
-Building dependency tree...
-0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
-Checking correctness of dependencies...
┌──────────────────────────────────────────────────────────────────────────────┐
-│ Install bwa build dependencies (internal resolver) │
+│ Install bwa build dependencies (apt-based resolver) │
└──────────────────────────────────────────────────────────────────────────────┘
-Build-Depends: base-files, base-passwd, bash, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, ncurses-base, ncurses-bin, perl-base, sed, login, sysvinit-utils, sysvinit, tar, bsdutils, mount, util-linux, libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), cdbs, debhelper (>= 8), zlib1g-dev
-Checking for already installed dependencies...
-base-files: already installed (6.0)
-base-passwd: already installed (3.5.22)
-bash: already installed (4.1-3)
-coreutils: already installed (8.5-1)
-dash: already installed (0.5.5.1-7.4)
-debianutils: already installed (3.4.3)
-diffutils: already installed (1:3.0-1)
-dpkg: already installed (1.15.8.8)
-e2fsprogs: already installed (1.41.12-2)
-findutils: already installed (4.4.2-1+b1)
-grep: already installed (2.6.3-3)
-gzip: already installed (1.3.12-9)
-hostname: already installed (3.05)
-ncurses-base: already installed (5.7+20100313-5)
-ncurses-bin: already installed (5.7+20100313-5)
-perl-base: already installed (5.10.1-17)
-sed: already installed (4.2.1-8)
-login: already installed (1:4.1.4.2+svn3283-2)
-sysvinit-utils: already installed (2.88dsf-13.1)
-sysvinit: already installed (2.88dsf-13.1)
-tar: already installed (1.25-3)
-bsdutils: already installed (1:2.17.2-7)
-mount: already installed (2.17.2-7)
-util-linux: already installed (2.17.2-7)
-libc6-dev: already installed (2.11.2-8)
-gcc: already installed (4:4.4.5-2 >= 4:4.4.3 is satisfied)
-g++: already installed (4:4.4.5-2 >= 4:4.4.3 is satisfied)
-make: already installed (3.81-8)
-dpkg-dev: already installed (1.15.8.8 >= 1.13.5 is satisfied)
-cdbs: missing
-debhelper: missing
-Using default version 8.0.0
-zlib1g-dev: missing
-Checking for dependency conflicts...
-Installing positive dependencies: cdbs debhelper zlib1g-dev
+Installing build dependencies
Reading package lists...
Building dependency tree...
+Reading state information...
The following extra packages will be installed:
- bsdmainutils file gettext gettext-base groff-base html2text intltool-debian
- libcroco3 libglib2.0-0 libmagic1 libpcre3 libunistring0 libxml2 man-db
- po-debconf
+ debhelper file gettext gettext-base groff-base html2text intltool-debian
+ libcroco3 libglib2.0-0 libmagic1 libpcre3 libpipeline1 libunistring0 libxml2
+ man-db po-debconf zlib1g-dev
Suggested packages:
- wamerican wordlist whois vacation devscripts doc-base dh-make gettext-doc
- groff less www-browser libmail-box-perl
+ dh-make gettext-doc groff less www-browser libmail-box-perl
Recommended packages:
- autotools-dev curl wget lynx-cur autopoint libglib2.0-data shared-mime-info
- xml-core libmail-sendmail-perl
+ curl wget lynx-cur autopoint libglib2.0-data shared-mime-info xml-core
+ libmail-sendmail-perl
The following NEW packages will be installed:
- bsdmainutils cdbs debhelper file gettext gettext-base groff-base html2text
- intltool-debian libcroco3 libglib2.0-0 libmagic1 libpcre3 libunistring0
- libxml2 man-db po-debconf zlib1g-dev
-0 upgraded, 18 newly installed, 0 to remove and 0 not upgraded.
-Need to get 10.4 MB of archives.
-After this operation, 28.6 MB of additional disk space will be used.
-Get:1 http://ftp.riken.jp/Linux/debian/debian/ unstable/main bsdmainutils amd64 8.2.1 [208 kB]
-Get:2 http://ftp.riken.jp/Linux/debian/debian/ unstable/main groff-base amd64 1.20.1-10 [1123 kB]
-Get:3 http://ftp.riken.jp/Linux/debian/debian/ unstable/main man-db amd64 2.5.7-8 [1543 kB]
-Get:4 http://ftp.riken.jp/Linux/debian/debian/ unstable/main libmagic1 amd64 5.04-5 [234 kB]
-Get:5 http://ftp.riken.jp/Linux/debian/debian/ unstable/main file amd64 5.04-5 [49.7 kB]
-Get:6 http://ftp.riken.jp/Linux/debian/debian/ unstable/main gettext-base amd64 0.18.1.1-3 [153 kB]
-Get:7 http://ftp.riken.jp/Linux/debian/debian/ unstable/main libpcre3 amd64 8.02-1.1 [234 kB]
-Get:8 http://ftp.riken.jp/Linux/debian/debian/ unstable/main libxml2 amd64 2.7.8.dfsg-2 [873 kB]
-Get:9 http://ftp.riken.jp/Linux/debian/debian/ unstable/main html2text amd64 1.3.2a-15 [103 kB]
-Get:10 http://ftp.riken.jp/Linux/debian/debian/ unstable/main libglib2.0-0 amd64 2.24.2-1 [1122 kB]
-Get:11 http://ftp.riken.jp/Linux/debian/debian/ unstable/main libcroco3 amd64 0.6.2-1 [125 kB]
-Get:12 http://ftp.riken.jp/Linux/debian/debian/ unstable/main libunistring0 amd64 0.9.3-3 [437 kB]
-Get:13 http://ftp.riken.jp/Linux/debian/debian/ unstable/main gettext amd64 0.18.1.1-3 [2076 kB]
-Get:14 http://ftp.riken.jp/Linux/debian/debian/ unstable/main intltool-debian all 0.35.0+20060710.1 [30.8 kB]
-Get:15 http://ftp.riken.jp/Linux/debian/debian/ unstable/main po-debconf all 1.0.16+nmu1 [223 kB]
-Get:16 http://ftp.riken.jp/Linux/debian/debian/ unstable/main debhelper all 8.0.0 [454 kB]
-Get:17 http://ftp.riken.jp/Linux/debian/debian/ unstable/main cdbs all 0.4.89 [1240 kB]
-Get:18 http://ftp.riken.jp/Linux/debian/debian/ unstable/main zlib1g-dev amd64 1:1.2.3.4.dfsg-3 [192 kB]
+ debhelper file gettext gettext-base groff-base html2text intltool-debian
+ libcroco3 libglib2.0-0 libmagic1 libpcre3 libpipeline1 libunistring0 libxml2
+ man-db po-debconf sbuild-build-depends-bwa-dummy zlib1g-dev
debconf: delaying package configuration, since apt-utils is not installed
-Fetched 10.4 MB in 2s (5015 kB/s)
-Selecting previously deselected package bsdmainutils.
-(Reading database ... 10128 files and directories currently installed.)
-Unpacking bsdmainutils (from .../bsdmainutils_8.2.1_amd64.deb) ...
-Selecting previously deselected package groff-base.
-Unpacking groff-base (from .../groff-base_1.20.1-10_amd64.deb) ...
-Selecting previously deselected package man-db.
-Unpacking man-db (from .../man-db_2.5.7-8_amd64.deb) ...
-Selecting previously deselected package libmagic1.
-Unpacking libmagic1 (from .../libmagic1_5.04-5_amd64.deb) ...
-Selecting previously deselected package file.
-Unpacking file (from .../archives/file_5.04-5_amd64.deb) ...
-Selecting previously deselected package gettext-base.
-Unpacking gettext-base (from .../gettext-base_0.18.1.1-3_amd64.deb) ...
-Selecting previously deselected package libpcre3.
-Unpacking libpcre3 (from .../libpcre3_8.02-1.1_amd64.deb) ...
-Selecting previously deselected package libxml2.
-Unpacking libxml2 (from .../libxml2_2.7.8.dfsg-2_amd64.deb) ...
-Selecting previously deselected package html2text.
+0 upgraded, 18 newly installed, 0 to remove and 0 not upgraded.
+Need to get 0 B/9162 kB of archives.
+After this operation, 25.4 MB of additional disk space will be used.
+Selecting previously unselected package libpipeline1.
+(Reading database ... 10824 files and directories currently installed.)
+Unpacking libpipeline1 (from .../libpipeline1_1.2.0-5_amd64.deb) ...
+Selecting previously unselected package libpcre3.
+Unpacking libpcre3 (from .../libpcre3_8.12-4_amd64.deb) ...
+Selecting previously unselected package libglib2.0-0.
+Unpacking libglib2.0-0 (from .../libglib2.0-0_2.28.8-1_amd64.deb) ...
+Selecting previously unselected package libxml2.
+Unpacking libxml2 (from .../libxml2_2.7.8.dfsg-5_amd64.deb) ...
+Selecting previously unselected package libcroco3.
+Unpacking libcroco3 (from .../libcroco3_0.6.2-2_amd64.deb) ...
+Selecting previously unselected package libunistring0.
+Unpacking libunistring0 (from .../libunistring0_0.9.3-5_amd64.deb) ...
+Selecting previously unselected package groff-base.
+Unpacking groff-base (from .../groff-base_1.21-6_amd64.deb) ...
+Selecting previously unselected package man-db.
+Unpacking man-db (from .../man-db_2.6.0.2-3_amd64.deb) ...
+Selecting previously unselected package libmagic1.
+Unpacking libmagic1 (from .../libmagic1_5.09-2_amd64.deb) ...
+Selecting previously unselected package file.
+Unpacking file (from .../archives/file_5.09-2_amd64.deb) ...
+Selecting previously unselected package gettext-base.
+Unpacking gettext-base (from .../gettext-base_0.18.1.1-5_amd64.deb) ...
+Selecting previously unselected package html2text.
Unpacking html2text (from .../html2text_1.3.2a-15_amd64.deb) ...
-Selecting previously deselected package libglib2.0-0.
-Unpacking libglib2.0-0 (from .../libglib2.0-0_2.24.2-1_amd64.deb) ...
-Selecting previously deselected package libcroco3.
-Unpacking libcroco3 (from .../libcroco3_0.6.2-1_amd64.deb) ...
-Selecting previously deselected package libunistring0.
-Unpacking libunistring0 (from .../libunistring0_0.9.3-3_amd64.deb) ...
-Selecting previously deselected package gettext.
-Unpacking gettext (from .../gettext_0.18.1.1-3_amd64.deb) ...
-Selecting previously deselected package intltool-debian.
+Selecting previously unselected package gettext.
+Unpacking gettext (from .../gettext_0.18.1.1-5_amd64.deb) ...
+Selecting previously unselected package intltool-debian.
Unpacking intltool-debian (from .../intltool-debian_0.35.0+20060710.1_all.deb) ...
-Selecting previously deselected package po-debconf.
+Selecting previously unselected package po-debconf.
Unpacking po-debconf (from .../po-debconf_1.0.16+nmu1_all.deb) ...
-Selecting previously deselected package debhelper.
-Unpacking debhelper (from .../debhelper_8.0.0_all.deb) ...
-Selecting previously deselected package cdbs.
-Unpacking cdbs (from .../archives/cdbs_0.4.89_all.deb) ...
-Selecting previously deselected package zlib1g-dev.
+Selecting previously unselected package debhelper.
+Unpacking debhelper (from .../debhelper_8.9.9_all.deb) ...
+Selecting previously unselected package zlib1g-dev.
Unpacking zlib1g-dev (from .../zlib1g-dev_1%3a1.2.3.4.dfsg-3_amd64.deb) ...
-Setting up bsdmainutils (8.2.1) ...
-update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode.
-update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode.
-Setting up groff-base (1.20.1-10) ...
-Setting up man-db (2.5.7-8) ...
-debconf: unable to initialize frontend: Dialog
-debconf: (TERM is not set, so the dialog frontend is not usable.)
-debconf: falling back to frontend: Readline
+Selecting previously unselected package sbuild-build-depends-bwa-dummy.
+Unpacking sbuild-build-depends-bwa-dummy (from .../sbuild-build-depends-bwa-dummy.deb) ...
+Setting up libpipeline1 (1.2.0-5) ...
+Setting up libpcre3 (8.12-4) ...
+Setting up libglib2.0-0 (2.28.8-1) ...
+No schema files found: doing nothing.
+Setting up libxml2 (2.7.8.dfsg-5) ...
+Setting up libcroco3 (0.6.2-2) ...
+Setting up libunistring0 (0.9.3-5) ...
+Setting up groff-base (1.21-6) ...
+Setting up man-db (2.6.0.2-3) ...
Building database of manual pages ...
-Setting up libmagic1 (5.04-5) ...
-Setting up file (5.04-5) ...
-Setting up gettext-base (0.18.1.1-3) ...
-Setting up libpcre3 (8.02-1.1) ...
-Setting up libxml2 (2.7.8.dfsg-2) ...
+Setting up libmagic1 (5.09-2) ...
+Setting up file (5.09-2) ...
+Setting up gettext-base (0.18.1.1-5) ...
Setting up html2text (1.3.2a-15) ...
-Setting up libglib2.0-0 (2.24.2-1) ...
-Setting up libcroco3 (0.6.2-1) ...
-Setting up libunistring0 (0.9.3-3) ...
-Setting up gettext (0.18.1.1-3) ...
+Setting up gettext (0.18.1.1-5) ...
Setting up intltool-debian (0.35.0+20060710.1) ...
Setting up po-debconf (1.0.16+nmu1) ...
-Setting up debhelper (8.0.0) ...
-Setting up cdbs (0.4.89) ...
+Setting up debhelper (8.9.9) ...
Setting up zlib1g-dev (1:1.2.3.4.dfsg-3) ...
-Removing negative dependencies:
-Reading package lists...
-Building dependency tree...
-Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
-Checking correctness of dependencies...
-Kernel: Linux 2.6.32-trunk-vserver-amd64 amd64 (x86_64)
-Toolchain package versions: binutils_2.20.1-15 dpkg-dev_1.15.8.8 g++-4.4_4.4.5-10 gcc-4.4_4.4.5-10 libc6-dev_2.11.2-8 libstdc++6_4.4.5-10 libstdc++6-4.4-dev_4.4.5-10 linux-libc-dev_2.6.32-30
-Package versions: apt_0.8.10.1 base-files_6.0 base-passwd_3.5.22 bash_4.1-3 binutils_2.20.1-15 bsdmainutils_8.2.1 bsdutils_1:2.17.2-7 build-essential_11.5 bzip2_1.0.5-6 cdbs_0.4.89 coreutils_8.5-1 cpp_4:4.4.5-2 cpp-4.4_4.4.5-10 dash_0.5.5.1-7.4 debconf_1.5.38 debconf-i18n_1.5.38 debfoster_2.7-1.1 debhelper_8.0.0 debian-archive-keyring_2010.08.28 debianutils_3.4.3 diffutils_1:3.0-1 dpkg_1.15.8.8 dpkg-dev_1.15.8.8 e2fslibs_1.41.12-2 e2fsprogs_1.41.12-2 fakeroot_1.14.5-1 file_5.04-5 findutils_4.4.2-1+b1 g++_4:4.4.5-2 g++-4.4_4.4.5-10 gcc_4:4.4.5-2 gcc-4.4_4.4.5-10 gcc-4.4-base_4.4.5-10 gettext_0.18.1.1-3 gettext-base_0.18.1.1-3 gnupg_1.4.10-4 gpgv_1.4.10-4 grep_2.6.3-3 groff-base_1.20.1-10 gzip_1.3.12-9 hostname_3.05 html2text_1.3.2a-15 initscripts_2.88dsf-13.1 insserv_1.14.0-2 intltool-debian_0.35.0+20060710.1 libacl1_2.2.49-4 libattr1_1:2.4.44-2 libblkid1_2.17.2-7 libbz2-1.0_1.0.5-6 libc-bin_2.11.2-8 libc-dev-bin_2.11.2-8 libc6_2.11.2-8 libc6-dev_2.11.2-8 libcomerr2_1.41.12-2 libcroco3_0.6.2-1 libdb4.7_4.7.25-12 libdb4.8_4.8.30-3 libdpkg-perl_1.15.8.8 libgc1c2_1:6.8-1.2 libgcc1_1:4.4.5-10 libgdbm3_1.8.3-9 libglib2.0-0_2.24.2-1 libgmp3c2_2:4.3.2+dfsg-1 libgomp1_4.4.5-10 liblocale-gettext-perl_1.05-6 liblzma2_5.0.0-2 libmagic1_5.04-5 libmpfr4_3.0.0-2 libncurses5_5.7+20100313-5 libpam-modules_1.1.1-6.1 libpam-runtime_1.1.1-6.1 libpam0g_1.1.1-6.1 libpcre3_8.02-1.1 libreadline6_6.1-3 libselinux1_2.0.96-1 libsepol1_2.0.42-1 libslang2_2.2.2-4 libss2_1.41.12-2 libstdc++6_4.4.5-10 libstdc++6-4.4-dev_4.4.5-10 libtext-charwidth-perl_0.04-6 libtext-iconv-perl_1.7-2 libtext-wrapi18n-perl_0.06-7 libtimedate-perl_1.2000-1 libunistring0_0.9.3-3 libusb-0.1-4_2:0.1.12-16 libuuid1_2.17.2-7 libxml2_2.7.8.dfsg-2 linux-libc-dev_2.6.32-30 login_1:4.1.4.2+svn3283-2 lsb-base_3.2-27 make_3.81-8 man-db_2.5.7-8 mawk_1.3.3-15 mount_2.17.2-7 ncurses-base_5.7+20100313-5 ncurses-bin_5.7+20100313-5 passwd_1:4.1.4.2+svn3283-2 patch_2.6-3 perl_5.10.1-17 perl-base_5.10.1-17 perl-modules_5.10.1-17 po-debconf_1.0.16+nmu1 readline-common_6.1-3 sed_4.2.1-8 sensible-utils_0.0.6 sysv-rc_2.88dsf-13.1 sysvinit_2.88dsf-13.1 sysvinit-utils_2.88dsf-13.1 tar_1.25-3 tzdata_2010o-1 util-linux_2.17.2-7 xz-utils_5.0.0-2 zlib1g_1:1.2.3.4.dfsg-3 zlib1g-dev_1:1.2.3.4.dfsg-3
+Setting up sbuild-build-depends-bwa-dummy (0.invalid.0) ...
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Build environment │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+Kernel: Linux 2.6.39-bpo.2-amd64 amd64 (x86_64)
+Toolchain package versions: binutils_2.21.90.20111025-1 dpkg-dev_1.16.1.1 g++-4.6_4.6.2-4 gcc-4.6_4.6.2-4 libc6-dev_2.13-21 libstdc++6_4.6.2-4 libstdc++6-4.6-dev_4.6.2-4 linux-libc-dev_3.0.0-6
+Package versions: apt_0.8.15.9 base-files_6.5 base-passwd_3.5.23 bash_4.1-3 binutils_2.21.90.20111025-1 bsdmainutils_8.2.3 bsdutils_1:2.19.1-5 build-essential_11.5 bzip2_1.0.5-7 coreutils_8.13-3 cpp_4:4.6.1-3 cpp-4.6_4.6.2-4 dash_0.5.7-2 debconf_1.5.41 debfoster_2.7-1.1 debhelper_8.9.9 debian-archive-keyring_2010.08.28 debianutils_4.0.4 diffutils_1:3.2-1 dpkg_1.16.1.1 dpkg-dev_1.16.1.1 e2fslibs_1.42~WIP-2011-10-16-1 e2fsprogs_1.42~WIP-2011-10-16-1 fakeroot_1.18.1-1 file_5.09-2 findutils_4.4.2-1+b1 g++_4:4.6.1-3 g++-4.6_4.6.2-4 gcc_4:4.6.1-3 gcc-4.6_4.6.2-4 gcc-4.6-base_4.6.2-4 gettext_0.18.1.1-5 gettext-base_0.18.1.1-5 gnupg_1.4.11-3 gpgv_1.4.11-3 grep_2.9-2 groff-base_1.21-6 gzip_1.4-2 hostname_3.06 html2text_1.3.2a-15 initscripts_2.88dsf-13.13 insserv_1.14.0-2.1 intltool-debian_0.35.0+20060710.1 libacl1_2.2.51-4 libattr1_1:2.4.46-3 libblkid1_2.19.1-5 libbz2-1.0_1.0.5-7 libc-bin_2.13-21 libc-dev-bin_2.13-21 libc6_2.13-21 libc6-dev_2.13-21 libclass-isa-perl_0.36-2 libcomerr2_1.42~WIP-2011-10-16-1 libcroco3_0.6.2-2 libdb5.1_5.1.25-11 libdpkg-perl_1.16.1.1 libgc1c2_1:7.1-8 libgcc1_1:4.6.2-4 libgdbm3_1.8.3-10 libglib2.0-0_2.28.8-1 libgmp10_2:5.0.2+dfsg-2 libgomp1_4.6.2-4 libgpm2_1.20.4-4 liblzma2_5.1.1alpha+20110809-2 liblzma5_5.1.1alpha+20110809-3 libmagic1_5.09-2 libmount1_2.19.1-5 libmpc2_0.9-4 libmpfr4_3.1.0-3 libncurses5_5.9-4 libpam-modules_1.1.3-6 libpam-modules-bin_1.1.3-6 libpam-runtime_1.1.3-6 libpam0g_1.1.3-6 libpcre3_8.12-4 libpipeline1_1.2.0-5 libpng12-0_1.2.46-3 libpod-plainer-perl_1.03-1 libquadmath0_4.6.2-4 libreadline6_6.2-7 libselinux1_2.1.0-4 libsepol1_2.1.0-1.1 libslang2_2.2.4-3 libss2_1.42~WIP-2011-10-16-1 libstdc++6_4.6.2-4 libstdc++6-4.6-dev_4.6.2-4 libswitch-perl_2.16-2 libtimedate-perl_1.2000-1 libtinfo5_5.9-4 libunistring0_0.9.3-5 libusb-0.1-4_2:0.1.12-19 libuuid1_2.19.1-5 libxml2_2.7.8.dfsg-5 linux-libc-dev_3.0.0-6 login_1:4.1.4.2+svn3283-3 lsb-base_3.2-28 make_3.81-8.1 man-db_2.6.0.2-3 mawk_1.3.3-16 mount_2.19.1-5 multiarch-support_2.13-21 ncurses-base_5.9-4 ncurses-bin_5.9-4 passwd_1:4.1.4.2+svn3283-3 patch_2.6.1-2 perl_5.14.2-3 perl-base_5.14.2-3 perl-modules_5.14.2-3 po-debconf_1.0.16+nmu1 readline-common_6.2-7 sbuild-build-depends-bwa-dummy_0.invalid.0 sbuild-build-depends-core-dummy_0.invalid.0 sed_4.2.1-9 sensible-utils_0.0.6 sysv-rc_2.88dsf-13.13 sysvinit_2.88dsf-13.13 sysvinit-utils_2.88dsf-13.13 tar_1.26-3 tzdata_2011n-1 util-linux_2.19.1-5 xz-utils_5.1.1alpha+20110809-3 zlib1g_1:1.2.3.4.dfsg-3 zlib1g-dev_1:1.2.3.4.dfsg-3
┌──────────────────────────────────────────────────────────────────────────────┐
│ Build │
@@ -210,142 +161,229 @@ Package versions: apt_0.8.10.1 base-files_6.0 base-passwd_3.5.22 bash_4.1-3 binu
Unpack source
─────────────
-dpkg-source: warning: extracting unsigned source package (bwa_0.5.9~rc-1.dsc)
-dpkg-source: info: extracting bwa in bwa-0.5.9~rc
-dpkg-source: info: unpacking bwa_0.5.9~rc.orig.tar.bz2
-dpkg-source: info: unpacking bwa_0.5.9~rc-1.debian.tar.gz
+dpkg-source: warning: extracting unsigned source package (bwa_0.6.0-1.dsc)
+dpkg-source: info: extracting bwa in bwa-0.6.0
+dpkg-source: info: unpacking bwa_0.6.0.orig.tar.bz2
+dpkg-source: info: unpacking bwa_0.6.0-1.debian.tar.gz
Check disc space
────────────────
+Sufficient free space for build
+
+User Environment
+────────────────
+
+HOME=/sbuild-nonexistent
+LOGNAME=charles
+PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
+SCHROOT_CHROOT_NAME=sid-amd64-sbuild
+SCHROOT_COMMAND=env
+SCHROOT_GID=1000
+SCHROOT_GROUP=charles
+SCHROOT_SESSION_ID=sid-amd64-sbuild-a638d509-5b19-4d6e-bf69-2ce494596aed
+SCHROOT_UID=31051
+SCHROOT_USER=charles
+SHELL=/bin/sh
+TERM=xterm
+USER=charles
+USERNAME=charles
dpkg-buildpackage
─────────────────
-dpkg-buildpackage: export CFLAGS from dpkg-buildflags (origin: vendor): -g -O2
-dpkg-buildpackage: export CPPFLAGS from dpkg-buildflags (origin: vendor):
-dpkg-buildpackage: export CXXFLAGS from dpkg-buildflags (origin: vendor): -g -O2
-dpkg-buildpackage: export FFLAGS from dpkg-buildflags (origin: vendor): -g -O2
-dpkg-buildpackage: export LDFLAGS from dpkg-buildflags (origin: vendor):
dpkg-buildpackage: source package bwa
-dpkg-buildpackage: source version 0.5.9~rc-1
+dpkg-buildpackage: source version 0.6.0-1
dpkg-buildpackage: source changed by Charles Plessy <plessy at debian.org>
- dpkg-source --before-build bwa-0.5.9~rc
+ dpkg-source --before-build bwa-0.6.0
dpkg-buildpackage: host architecture amd64
fakeroot debian/rules clean
-test -x debian/rules
-dh_testroot
-rm -f debian/stamp-makefile-build debian/stamp-makefile-install
-/usr/bin/make -C . CFLAGS="-g -O2 -g -Wall -O2" CXXFLAGS="-g -O2 -g -Wall -O2" CPPFLAGS="" LDFLAGS="" -k clean
-make[1]: Entering directory `/build/charles-bwa_0.5.9~rc-1-amd64-vw1jBX/bwa-0.5.9~rc'
-make[2]: Entering directory `/build/charles-bwa_0.5.9~rc-1-amd64-vw1jBX/bwa-0.5.9~rc'
+dh clean
+ dh_testdir
+ dh_auto_clean
+make[1]: Entering directory `/«PKGBUILDDIR»'
rm -f gmon.out *.o a.out bwa *~ *.a
-make[2]: Leaving directory `/build/charles-bwa_0.5.9~rc-1-amd64-vw1jBX/bwa-0.5.9~rc'
-make[2]: Entering directory `/build/charles-bwa_0.5.9~rc-1-amd64-vw1jBX/bwa-0.5.9~rc/bwt_gen'
-rm -f gmon.out *.o a.out *~ *.a
-make[2]: Leaving directory `/build/charles-bwa_0.5.9~rc-1-amd64-vw1jBX/bwa-0.5.9~rc/bwt_gen'
-make[1]: Leaving directory `/build/charles-bwa_0.5.9~rc-1-amd64-vw1jBX/bwa-0.5.9~rc'
-dh_clean
- dpkg-source -b bwa-0.5.9~rc
+make[1]: Leaving directory `/«PKGBUILDDIR»'
+ dh_clean
+ dpkg-source -b bwa-0.6.0
dpkg-source: info: using source format `3.0 (quilt)'
-dpkg-source: info: building bwa using existing ./bwa_0.5.9~rc.orig.tar.bz2
-dpkg-source: info: building bwa in bwa_0.5.9~rc-1.debian.tar.gz
-dpkg-source: info: building bwa in bwa_0.5.9~rc-1.dsc
+dpkg-source: info: building bwa using existing ./bwa_0.6.0.orig.tar.bz2
+dpkg-source: info: building bwa in bwa_0.6.0-1.debian.tar.gz
+dpkg-source: info: building bwa in bwa_0.6.0-1.dsc
debian/rules build
-test -x debian/rules
-mkdir -p "."
-/usr/bin/make -C . CFLAGS="-g -O2 -g -Wall -O2" CXXFLAGS="-g -O2 -g -Wall -O2" CPPFLAGS="" LDFLAGS=""
-make[1]: Entering directory `/build/charles-bwa_0.5.9~rc-1-amd64-vw1jBX/bwa-0.5.9~rc'
-make[2]: Entering directory `/build/charles-bwa_0.5.9~rc-1-amd64-vw1jBX/bwa-0.5.9~rc'
-make[2]: Nothing to be done for `lib'.
-make[2]: Leaving directory `/build/charles-bwa_0.5.9~rc-1-amd64-vw1jBX/bwa-0.5.9~rc'
-make[2]: Entering directory `/build/charles-bwa_0.5.9~rc-1-amd64-vw1jBX/bwa-0.5.9~rc/bwt_gen'
-gcc -c -g -O2 -g -Wall -O2 -DHAVE_PTHREAD bwt_gen.c -o bwt_gen.o
-gcc -c -g -O2 -g -Wall -O2 -DHAVE_PTHREAD QSufSort.c -o QSufSort.o
-ar -cru libbwtgen.a bwt_gen.o QSufSort.o
-make[2]: Leaving directory `/build/charles-bwa_0.5.9~rc-1-amd64-vw1jBX/bwa-0.5.9~rc/bwt_gen'
-gcc -c -g -O2 -g -Wall -O2 -DHAVE_PTHREAD utils.c -o utils.o
-gcc -c -g -O2 -g -Wall -O2 -DHAVE_PTHREAD bwt.c -o bwt.o
-gcc -c -g -O2 -g -Wall -O2 -DHAVE_PTHREAD bwtio.c -o bwtio.o
-gcc -c -g -O2 -g -Wall -O2 -DHAVE_PTHREAD bwtaln.c -o bwtaln.o
-gcc -c -g -O2 -g -Wall -O2 -DHAVE_PTHREAD bwtgap.c -o bwtgap.o
-gcc -c -g -O2 -g -Wall -O2 -DHAVE_PTHREAD is.c -o is.o
-gcc -c -g -O2 -g -Wall -O2 -DHAVE_PTHREAD bntseq.c -o bntseq.o
-gcc -c -g -O2 -g -Wall -O2 -DHAVE_PTHREAD bwtmisc.c -o bwtmisc.o
-gcc -c -g -O2 -g -Wall -O2 -DHAVE_PTHREAD bwtindex.c -o bwtindex.o
-gcc -c -g -O2 -g -Wall -O2 -DHAVE_PTHREAD stdaln.c -o stdaln.o
-gcc -c -g -O2 -g -Wall -O2 -DHAVE_PTHREAD simple_dp.c -o simple_dp.o
-gcc -c -g -O2 -g -Wall -O2 -DHAVE_PTHREAD bwaseqio.c -o bwaseqio.o
-gcc -c -g -O2 -g -Wall -O2 -DHAVE_PTHREAD bwase.c -o bwase.o
-gcc -c -g -O2 -g -Wall -O2 -DHAVE_PTHREAD bwape.c -o bwape.o
-gcc -c -g -O2 -g -Wall -O2 -DHAVE_PTHREAD kstring.c -o kstring.o
-gcc -c -g -O2 -g -Wall -O2 -DHAVE_PTHREAD cs2nt.c -o cs2nt.o
-gcc -c -g -O2 -g -Wall -O2 -DHAVE_PTHREAD bwtsw2_core.c -o bwtsw2_core.o
-gcc -c -g -O2 -g -Wall -O2 -DHAVE_PTHREAD bwtsw2_main.c -o bwtsw2_main.o
-gcc -c -g -O2 -g -Wall -O2 -DHAVE_PTHREAD bwtsw2_aux.c -o bwtsw2_aux.o
-gcc -c -g -O2 -g -Wall -O2 -DHAVE_PTHREAD bwt_lite.c -o bwt_lite.o
-gcc -c -g -O2 -g -Wall -O2 -DHAVE_PTHREAD bwtsw2_chain.c -o bwtsw2_chain.o
-gcc -c -g -O2 -g -Wall -O2 -DHAVE_PTHREAD bamlite.c -o bamlite.o
-gcc -c -g -O2 -g -Wall -O2 -DHAVE_PTHREAD main.c -o main.o
-gcc -g -O2 -g -Wall -O2 -DHAVE_PTHREAD utils.o bwt.o bwtio.o bwtaln.o bwtgap.o is.o bntseq.o bwtmisc.o bwtindex.o stdaln.o simple_dp.o bwaseqio.o bwase.o bwape.o kstring.o cs2nt.o bwtsw2_core.o bwtsw2_main.o bwtsw2_aux.o bwt_lite.o bwtsw2_chain.o bamlite.o main.o -o bwa -lm -lz -lpthread -Lbwt_gen -lbwtgen
-make[1]: Leaving directory `/build/charles-bwa_0.5.9~rc-1-amd64-vw1jBX/bwa-0.5.9~rc'
-touch debian/stamp-makefile-build
-DEB_MAKE_CHECK_TARGET unset, not running checks
+dh build
+ dh_testdir
+ dh_auto_configure
+ debian/rules override_dh_auto_build
+make[1]: Entering directory `/«PKGBUILDDIR»'
+dh_auto_build -- CFLAGS="-Wall -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -D_FORTIFY_SOURCE=2 -Wl,-z,relro"
+make[2]: Entering directory `/«PKGBUILDDIR»'
+gcc -c -Wall -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -D_FORTIFY_SOURCE=2 -Wl,-z,relro -DHAVE_PTHREAD QSufSort.c -o QSufSort.o
+QSufSort.c: In function 'QSufSortSuffixSort':
+QSufSort.c:62:10: warning: variable 'maxNumInputSymbol' set but not used [-Wunused-but-set-variable]
+gcc -c -Wall -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -D_FORTIFY_SOURCE=2 -Wl,-z,relro -DHAVE_PTHREAD bwt_gen.c -o bwt_gen.o
+bwt_gen.c: In function 'BWTIncBuildRelativeRank':
+bwt_gen.c:873:10: warning: variable 'oldInverseSa0RelativeRank' set but not used [-Wunused-but-set-variable]
+bwt_gen.c: In function 'BWTIncMergeBwt':
+bwt_gen.c:947:15: warning: variable 'bitsInWordMinusBitPerChar' set but not used [-Wunused-but-set-variable]
+bwt_gen.c: In function 'BWTIncConstructFromPacked':
+bwt_gen.c:1452:7: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result]
+bwt_gen.c:1468:7: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result]
+bwt_gen.c:1483:8: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result]
+gcc -c -Wall -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -D_FORTIFY_SOURCE=2 -Wl,-z,relro -DHAVE_PTHREAD utils.c -o utils.o
+gcc -c -Wall -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -D_FORTIFY_SOURCE=2 -Wl,-z,relro -DHAVE_PTHREAD bwt.c -o bwt.o
+gcc -c -Wall -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -D_FORTIFY_SOURCE=2 -Wl,-z,relro -DHAVE_PTHREAD bwtio.c -o bwtio.o
+bwtio.c: In function 'bwt_restore_bwt':
+bwtio.c:62:7: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result]
+bwtio.c:63:7: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result]
+bwtio.c:64:7: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result]
+bwtio.c: In function 'bwt_restore_sa':
+bwtio.c:36:7: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result]
+bwtio.c:38:7: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result]
+bwtio.c:39:7: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result]
+bwtio.c:40:7: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result]
+bwtio.c:47:7: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result]
+gcc -c -Wall -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -D_FORTIFY_SOURCE=2 -Wl,-z,relro -DHAVE_PTHREAD bwtaln.c -o bwtaln.o
+gcc -c -Wall -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -D_FORTIFY_SOURCE=2 -Wl,-z,relro -DHAVE_PTHREAD bwtgap.c -o bwtgap.o
+gcc -c -Wall -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -D_FORTIFY_SOURCE=2 -Wl,-z,relro -DHAVE_PTHREAD is.c -o is.o
+gcc -c -Wall -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -D_FORTIFY_SOURCE=2 -Wl,-z,relro -DHAVE_PTHREAD bntseq.c -o bntseq.o
+bntseq.c: In function 'bns_restore_core':
+bntseq.c:98:9: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
+bntseq.c:106:10: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
+bntseq.c:114:10: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
+bntseq.c:123:9: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
+bntseq.c:129:10: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
+gcc -c -Wall -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -D_FORTIFY_SOURCE=2 -Wl,-z,relro -DHAVE_PTHREAD bwtmisc.c -o bwtmisc.o
+bwtmisc.c: In function 'bwa_pac2cspac_core':
+bwtmisc.c:172:7: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result]
+bwtmisc.c: In function 'bwt_pac2bwt':
+bwtmisc.c:72:7: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result]
+bwtmisc.c: In function 'bwa_seq_len':
+bwtmisc.c:51:7: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result]
+gcc -c -Wall -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -D_FORTIFY_SOURCE=2 -Wl,-z,relro -DHAVE_PTHREAD bwtindex.c -o bwtindex.o
+gcc -c -Wall -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -D_FORTIFY_SOURCE=2 -Wl,-z,relro -DHAVE_PTHREAD ksw.c -o ksw.o
+gcc -c -Wall -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -D_FORTIFY_SOURCE=2 -Wl,-z,relro -DHAVE_PTHREAD stdaln.c -o stdaln.o
+stdaln.c: In function 'aln_local_core':
+stdaln.c:545:25: warning: variable 'b' set but not used [-Wunused-but-set-variable]
+stdaln.c: In function 'aln_extend_core':
+stdaln.c:865:16: warning: variable 'tmp_len' set but not used [-Wunused-but-set-variable]
+gcc -c -Wall -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -D_FORTIFY_SOURCE=2 -Wl,-z,relro -DHAVE_PTHREAD simple_dp.c -o simple_dp.o
+gcc -c -Wall -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -D_FORTIFY_SOURCE=2 -Wl,-z,relro -DHAVE_PTHREAD bwaseqio.c -o bwaseqio.o
+gcc -c -Wall -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -D_FORTIFY_SOURCE=2 -Wl,-z,relro -DHAVE_PTHREAD bwase.c -o bwase.o
+bwase.c: In function 'bwa_aln2seq_core':
+bwase.c:74:15: warning: variable 'k' set but not used [-Wunused-but-set-variable]
+bwase.c: In function 'bwa_print_sam1':
+bwase.c:447:17: warning: variable 'm_is_N' set but not used [-Wunused-but-set-variable]
+bwase.c: In function 'bwa_sai2sam_se_core':
+bwase.c:603:7: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result]
+bwase.c:619:9: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result]
+bwase.c:624:9: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result]
+bwase.c: In function 'bwa_refine_gapped':
+bwase.c:310:8: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result]
+bwase.c:316:8: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result]
+gcc -c -Wall -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -D_FORTIFY_SOURCE=2 -Wl,-z,relro -DHAVE_PTHREAD bwape.c -o bwape.o
+bwape.c: In function 'bwa_sai2sam_pe_core':
+bwape.c:683:7: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result]
+bwape.c:686:7: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result]
+bwape.c:697:9: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result]
+bwape.c: In function 'bwa_paired_sw':
+bwape.c:527:8: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result]
+bwape.c: In function 'bwa_cal_pac_pos_pe':
+bwape.c:312:9: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result]
+bwape.c:316:9: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result]
+gcc -c -Wall -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -D_FORTIFY_SOURCE=2 -Wl,-z,relro -DHAVE_PTHREAD kstring.c -o kstring.o
+gcc -c -Wall -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -D_FORTIFY_SOURCE=2 -Wl,-z,relro -DHAVE_PTHREAD cs2nt.c -o cs2nt.o
+gcc -c -Wall -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -D_FORTIFY_SOURCE=2 -Wl,-z,relro -DHAVE_PTHREAD bwtsw2_core.c -o bwtsw2_core.o
+gcc -c -Wall -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -D_FORTIFY_SOURCE=2 -Wl,-z,relro -DHAVE_PTHREAD bwtsw2_main.c -o bwtsw2_main.o
+gcc -c -Wall -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -D_FORTIFY_SOURCE=2 -Wl,-z,relro -DHAVE_PTHREAD bwtsw2_aux.c -o bwtsw2_aux.o
+bwtsw2_aux.c: In function 'gen_cigar':
+bwtsw2_aux.c:186:7: warning: variable 'score' set but not used [-Wunused-but-set-variable]
+bwtsw2_aux.c: In function 'bsw2_aln':
+bwtsw2_aux.c:734:7: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result]
+gcc -c -Wall -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -D_FORTIFY_SOURCE=2 -Wl,-z,relro -DHAVE_PTHREAD bwt_lite.c -o bwt_lite.o
+gcc -c -Wall -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -D_FORTIFY_SOURCE=2 -Wl,-z,relro -DHAVE_PTHREAD bwtsw2_chain.c -o bwtsw2_chain.o
+gcc -c -Wall -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -D_FORTIFY_SOURCE=2 -Wl,-z,relro -DHAVE_PTHREAD bamlite.c -o bamlite.o
+gcc -c -Wall -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -D_FORTIFY_SOURCE=2 -Wl,-z,relro -DHAVE_PTHREAD fastmap.c -o fastmap.o
+gcc -c -Wall -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -D_FORTIFY_SOURCE=2 -Wl,-z,relro -DHAVE_PTHREAD bwtsw2_pair.c -o bwtsw2_pair.o
+gcc -c -Wall -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -D_FORTIFY_SOURCE=2 -Wl,-z,relro -DHAVE_PTHREAD main.c -o main.o
+gcc -Wall -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -D_FORTIFY_SOURCE=2 -Wl,-z,relro -DHAVE_PTHREAD QSufSort.o bwt_gen.o utils.o bwt.o bwtio.o bwtaln.o bwtgap.o is.o bntseq.o bwtmisc.o bwtindex.o ksw.o stdaln.o simple_dp.o bwaseqio.o bwase.o bwape.o kstring.o cs2nt.o bwtsw2_core.o bwtsw2_main.o bwtsw2_aux.o bwt_lite.o bwtsw2_chain.o bamlite.o fastmap.o bwtsw2_pair.o main.o -o bwa -lm -lz -lpthread
+make[2]: Leaving directory `/«PKGBUILDDIR»'
+make[1]: Leaving directory `/«PKGBUILDDIR»'
+ dh_auto_test
fakeroot debian/rules binary
-test -x debian/rules
-dh_testroot
-dh_prep
-dh_installdirs -A
-mkdir -p "."
-DEB_MAKE_CHECK_TARGET unset, not running checks
-DEB_MAKE_INSTALL_TARGET unset, skipping default makefile.mk common-install target
-Adding cdbs dependencies to debian/bwa.substvars
-dh_installdirs -pbwa
-dh_installdocs -pbwa ./NEWS
-dh_installexamples -pbwa
-dh_installman -pbwa
-dh_installinfo -pbwa
-dh_installmenu -pbwa
-dh_installcron -pbwa
-dh_installinit -pbwa
-dh_installdebconf -pbwa
-dh_installemacsen -pbwa
-dh_installcatalogs -pbwa
-dh_installpam -pbwa
-dh_installlogrotate -pbwa
-dh_installlogcheck -pbwa
-dh_installchangelogs -pbwa ./ChangeLog
-dh_installudev -pbwa
-dh_lintian -pbwa
-dh_install -pbwa
-dh_link -pbwa
-dh_installmime -pbwa
-dh_strip -pbwa
-dh_compress -pbwa
-dh_fixperms -pbwa
-dh_makeshlibs -pbwa
-dh_installdeb -pbwa
-dh_perl -pbwa
-dh_shlibdeps -pbwa
-dh_gencontrol -pbwa
+dh binary
+ dh_testroot
+ dh_prep
+ dh_installdirs
+ dh_auto_install
+ dh_install
+ dh_installdocs
+ dh_installchangelogs
+ dh_installexamples
+ dh_installman
+ dh_installcatalogs
+ dh_installcron
+ dh_installdebconf
+ dh_installemacsen
+ dh_installifupdown
+ dh_installinfo
+ dh_installinit
+ dh_installmenu
+ dh_installmime
+ dh_installmodules
+ dh_installlogcheck
+ dh_installlogrotate
+ dh_installpam
+ dh_installppp
+ dh_installudev
+ dh_installwm
+ dh_installxfonts
+ dh_installgsettings
+ dh_bugfiles
+ dh_ucf
+ dh_lintian
+ dh_gconf
+ dh_icons
+ dh_perl
+ dh_usrlocal
+ dh_link
+ dh_compress
+ dh_fixperms
+ dh_strip
+ dh_makeshlibs
+ dh_shlibdeps
+ dh_installdeb
+ dh_gencontrol
dpkg-gencontrol: warning: package bwa: unused substitution variable ${perl:Depends}
-dh_md5sums -pbwa
-dh_builddeb -pbwa
-dpkg-deb: building package `bwa' in `../bwa_0.5.9~rc-1_amd64.deb'.
- dpkg-genchanges >../bwa_0.5.9~rc-1_amd64.changes
+ dh_md5sums
+ dh_builddeb
+dpkg-deb: building package `bwa' in `../bwa_0.6.0-1_amd64.deb'.
+ dpkg-genchanges >../bwa_0.6.0-1_amd64.changes
dpkg-genchanges: including full source code in upload
- dpkg-source --after-build bwa-0.5.9~rc
+ dpkg-source --after-build bwa-0.6.0
dpkg-buildpackage: full upload (original source is included)
────────────────────────────────────────────────────────────────────────────────
-Build finished at 20110120-2146
+Build finished at 20111114-1929
+
+Finished
+────────
+
+I: Built successfully
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Changes │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+
+bwa_0.6.0-1_amd64.changes:
+──────────────────────────
-bwa_0.5.9~rc-1_amd64.changes:
Format: 1.8
-Date: Thu, 20 Jan 2011 21:42:55 +0900
+Date: Mon, 14 Nov 2011 19:28:44 +0900
Source: bwa
Binary: bwa
Architecture: source amd64
-Version: 0.5.9~rc-1
+Version: 0.6.0-1
Distribution: unstable
Urgency: low
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
@@ -353,42 +391,44 @@ Changed-By: Charles Plessy <plessy at debian.org>
Description:
bwa - Burrows-Wheeler Aligner
Changes:
- bwa (0.5.9~rc-1) experimental; urgency=low
+ bwa (0.6.0-1) experimental; urgency=low
.
- * New usptream release candidate.
+ [9ce640c] New upstream release (not to use in a production pipeline).
+ [e641dd6] Corrected the name of the file downloaded by uscan.
+ [4ada685] Pass Dpkg build flags to the compiler through Debhelper 9. Thanks, Niels Thykier!
Checksums-Sha1:
- 2a157c61e40b2533768c916fa97646d621912eae 1029 bwa_0.5.9~rc-1.dsc
- bd3b6c1d3b846fe0f52c8d88ea98a65804a2e159 112929 bwa_0.5.9~rc.orig.tar.bz2
- b2fe8be65c2b1bd4bb6941fa6e6ec80e8fbbf5f9 3594 bwa_0.5.9~rc-1.debian.tar.gz
- e5aae3445b5c49819adc4507262f2dae0215ef53 136252 bwa_0.5.9~rc-1_amd64.deb
+ b506f8f9b744e79530c34637f7a7e244d0aee41c 1041 bwa_0.6.0-1.dsc
+ bed98c8e29dbad66633d6cab78544dd887525fc1 129917 bwa_0.6.0.orig.tar.bz2
+ 53581a760b4ada06a5b9d2ad99e5266f189e6673 4313 bwa_0.6.0-1.debian.tar.gz
+ 8a4560b51febf50ba12cdaa195c05dbf292bc7a2 151896 bwa_0.6.0-1_amd64.deb
Checksums-Sha256:
- ed38ee7c4ea3ac2e7b3b06252c9f7f6095fd8d2801094c2fe979960033d45583 1029 bwa_0.5.9~rc-1.dsc
- 099069e3206b903658110512cb27218ebb4b635ca7f55d0aa14ab1a1d9351b0c 112929 bwa_0.5.9~rc.orig.tar.bz2
- d83a67d6e597931ba5e2e5482edfe68ad4fbccc50ec0878212be3c8609e7576c 3594 bwa_0.5.9~rc-1.debian.tar.gz
- e7b23a61792f9f6941ca81e5e31dc70f6e47d2c47580755e161ad7fcb9613311 136252 bwa_0.5.9~rc-1_amd64.deb
+ f1fe44aea44fffe2f394c897fb78005bfa80753901849a6806c9037b7e20e43e 1041 bwa_0.6.0-1.dsc
+ e30b063b2ebfe7cfd2c431f37a6c35700b953c13d9c7088b89edcb4d56e62c7b 129917 bwa_0.6.0.orig.tar.bz2
+ 009c44be30a73c9df9045850357087bf512109b8f660be2224d48ebf4b7e6bf6 4313 bwa_0.6.0-1.debian.tar.gz
+ d1dafd8a5d59a6f9fc685d9875ec35db9048466aa1eeace6d8eb7dd1b5d3416c 151896 bwa_0.6.0-1_amd64.deb
Files:
- f8257b0a1bf6ad279992cfb7440c1284 1029 science optional bwa_0.5.9~rc-1.dsc
- 8147f548ade48d867311bc79a23d2b46 112929 science optional bwa_0.5.9~rc.orig.tar.bz2
- e5420c4744ecbbffd5ebc49b4d1cef78 3594 science optional bwa_0.5.9~rc-1.debian.tar.gz
- 68751b8d48733482abdfb032f0d0cc7d 136252 science optional bwa_0.5.9~rc-1_amd64.deb
+ 031e9a879cbc27359fe0027705443d96 1041 science optional bwa_0.6.0-1.dsc
+ 89dc57e3791044e661742cad988eb203 129917 science optional bwa_0.6.0.orig.tar.bz2
+ 9b285d6b6415c7f7ebb806389243c809 4313 science optional bwa_0.6.0-1.debian.tar.gz
+ 53fe875efc2288841ba96fa51ef2efc8 151896 science optional bwa_0.6.0-1_amd64.deb
┌──────────────────────────────────────────────────────────────────────────────┐
│ Package contents │
└──────────────────────────────────────────────────────────────────────────────┘
-bwa_0.5.9~rc-1_amd64.deb
-────────────────────────
+bwa_0.6.0-1_amd64.deb
+─────────────────────
new debian package, version 2.0.
- size 136252 bytes: control archive= 944 bytes.
- 777 bytes, 17 lines control
- 556 bytes, 9 lines md5sums
+ size 151896 bytes: control archive= 991 bytes.
+ 774 bytes, 17 lines control
+ 610 bytes, 10 lines md5sums
Package: bwa
- Version: 0.5.9~rc-1
+ Version: 0.6.0-1
Architecture: amd64
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
- Installed-Size: 308
+ Installed-Size: 296
Depends: libc6 (>= 2.7), zlib1g (>= 1:1.1.4)
Suggests: samtools
Section: science
@@ -402,38 +442,59 @@ bwa_0.5.9~rc-1_amd64.deb
to around 100 kbp. Both algorithms do gapped alignment. They are usually more
accurate and faster on queries with low error rates.
-drwxr-xr-x root/root 0 2011-01-20 21:46 ./
-drwxr-xr-x root/root 0 2011-01-20 21:46 ./usr/
-drwxr-xr-x root/root 0 2011-01-20 21:46 ./usr/bin/
--rwxr-xr-x root/root 193064 2011-01-20 21:46 ./usr/bin/bwa
-drwxr-xr-x root/root 0 2011-01-20 21:46 ./usr/share/
-drwxr-xr-x root/root 0 2011-01-20 21:46 ./usr/share/doc/
-drwxr-xr-x root/root 0 2011-01-20 21:46 ./usr/share/doc/bwa/
--rw-r--r-- root/root 805 2011-01-20 21:43 ./usr/share/doc/bwa/changelog.Debian.gz
--rw-r--r-- root/root 17751 2011-01-20 20:35 ./usr/share/doc/bwa/changelog.gz
--rw-r--r-- root/root 17751 2011-01-20 20:35 ./usr/share/doc/bwa/ChangeLog.gz
--rw-r--r-- root/root 5606 2011-01-20 20:35 ./usr/share/doc/bwa/NEWS.gz
--rw-r--r-- root/root 2679 2011-01-20 20:52 ./usr/share/doc/bwa/copyright
-drwxr-xr-x root/root 0 2011-01-20 21:46 ./usr/share/bwa/
--rwxr-xr-x root/root 3176 2011-01-20 20:35 ./usr/share/bwa/solid2fastq.pl
--rwxr-xr-x root/root 616 2011-01-20 20:35 ./usr/share/bwa/qualfa2fq.pl
-drwxr-xr-x root/root 0 2011-01-20 21:46 ./usr/share/man/
-drwxr-xr-x root/root 0 2011-01-20 21:46 ./usr/share/man/man1/
--rw-r--r-- root/root 7423 2011-01-20 21:46 ./usr/share/man/man1/bwa.1.gz
+drwxr-xr-x root/root 0 2011-11-14 19:29 ./
+drwxr-xr-x root/root 0 2011-11-14 19:29 ./usr/
+drwxr-xr-x root/root 0 2011-11-14 19:29 ./usr/bin/
+-rwxr-xr-x root/root 219752 2011-11-14 19:29 ./usr/bin/bwa
+drwxr-xr-x root/root 0 2011-11-14 19:29 ./usr/share/
+drwxr-xr-x root/root 0 2011-11-14 19:29 ./usr/share/man/
+drwxr-xr-x root/root 0 2011-11-14 19:29 ./usr/share/man/man1/
+-rw-r--r-- root/root 7745 2011-11-14 19:29 ./usr/share/man/man1/bwa.1.gz
+drwxr-xr-x root/root 0 2011-11-14 19:29 ./usr/share/bwa/
+-rwxr-xr-x root/root 616 2011-11-13 10:07 ./usr/share/bwa/qualfa2fq.pl
+-rwxr-xr-x root/root 3176 2011-11-13 10:07 ./usr/share/bwa/solid2fastq.pl
+-rwxr-xr-x root/root 730 2011-11-13 10:07 ./usr/share/bwa/xa2multi.pl
+drwxr-xr-x root/root 0 2011-11-14 19:29 ./usr/share/doc/
+drwxr-xr-x root/root 0 2011-11-14 19:29 ./usr/share/doc/bwa/
+-rw-r--r-- root/root 17912 2011-11-13 10:07 ./usr/share/doc/bwa/changelog.gz
+-rw-r--r-- root/root 6680 2011-11-13 10:07 ./usr/share/doc/bwa/NEWS.gz
+-rw-r--r-- root/root 2785 2011-11-14 19:27 ./usr/share/doc/bwa/copyright
+-rw-r--r-- root/root 634 2011-11-13 10:07 ./usr/share/doc/bwa/README
+-rw-r--r-- root/root 1299 2011-11-14 19:28 ./usr/share/doc/bwa/changelog.Debian.gz
┌──────────────────────────────────────────────────────────────────────────────┐
-│ Finished │
+│ Post Build │
└──────────────────────────────────────────────────────────────────────────────┘
-Built successfully
-────────────────────────────────────────────────────────────────────────────────
+
+lintian
+───────
+
+W: bwa source: package-needs-versioned-debhelper-build-depends 9
+P: bwa source: unversioned-copyright-format-uri http://dep.debian.net/deps/dep5/
+W: bwa source: debian-watch-file-should-use-sf-redirector line 4
+W: bwa: debian-changelog-line-too-long line 3
+W: bwa: manpage-has-errors-from-man usr/share/man/man1/bwa.1.gz around line 328: table wider than line width
+I: bwa: hyphen-used-as-minus-sign usr/share/man/man1/bwa.1.gz:7
+I: bwa: hyphen-used-as-minus-sign usr/share/man/man1/bwa.1.gz:49
+I: bwa: hyphen-used-as-minus-sign usr/share/man/man1/bwa.1.gz:81
+I: bwa: hyphen-used-as-minus-sign usr/share/man/man1/bwa.1.gz:82
+I: bwa: hyphen-used-as-minus-sign usr/share/man/man1/bwa.1.gz:83
+I: bwa: hyphen-used-as-minus-sign usr/share/man/man1/bwa.1.gz:107
+I: bwa: hyphen-used-as-minus-sign usr/share/man/man1/bwa.1.gz:108
+I: bwa: hyphen-used-as-minus-sign usr/share/man/man1/bwa.1.gz:119
+I: bwa: hyphen-used-as-minus-sign usr/share/man/man1/bwa.1.gz:177
+I: bwa: hyphen-used-as-minus-sign usr/share/man/man1/bwa.1.gz:178
+I: bwa: hyphen-used-as-minus-sign usr/share/man/man1/bwa.1.gz 9 more occurrences not shown
+
+I: Lintian run was successful.
┌──────────────────────────────────────────────────────────────────────────────┐
-│ Post Build │
+│ Cleanup │
└──────────────────────────────────────────────────────────────────────────────┘
-Purging /var/lib/schroot/mount/unstable-amd64-sbuild-6c7e43c7-132d-49c6-a057-a945665256ee/build/charles-bwa_0.5.9~rc-1-amd64-vw1jBX
+Purging /«BUILDDIR»
Reading package lists...
Building dependency tree...
Reading state information...
@@ -442,26 +503,22 @@ Reading package lists...
Building dependency tree...
Reading state information...
The following packages will be REMOVED:
- bsdmainutils* cdbs* debhelper* file* gettext* gettext-base* groff-base*
- html2text* intltool-debian* libcroco3* libglib2.0-0* libmagic1* libpcre3*
- libunistring0* libxml2* man-db* po-debconf* zlib1g-dev*
+ debhelper* file* gettext* gettext-base* groff-base* html2text*
+ intltool-debian* libcroco3* libglib2.0-0* libmagic1* libpcre3* libpipeline1*
+ libunistring0* libxml2* man-db* po-debconf* sbuild-build-depends-bwa-dummy*
+ zlib1g-dev*
0 upgraded, 0 newly installed, 18 to remove and 0 not upgraded.
-After this operation, 28.6 MB disk space will be freed.
-(Reading database ... 11457 files and directories currently installed.)
-Removing cdbs ...
+After this operation, 25.4 MB disk space will be freed.
+(Reading database ... 12058 files and directories currently installed.)
+Removing sbuild-build-depends-bwa-dummy ...
Removing debhelper ...
-Removing man-db ...
-Purging configuration files for man-db ...
-debconf: unable to initialize frontend: Dialog
-debconf: (TERM is not set, so the dialog frontend is not usable.)
-debconf: falling back to frontend: Readline
-Removing bsdmainutils ...
-Purging configuration files for bsdmainutils ...
Removing file ...
Removing po-debconf ...
Removing intltool-debian ...
Removing gettext ...
Removing gettext-base ...
+Removing man-db ...
+Purging configuration files for man-db ...
Removing groff-base ...
Purging configuration files for groff-base ...
Removing html2text ...
@@ -474,6 +531,8 @@ Removing libmagic1 ...
Purging configuration files for libmagic1 ...
Removing libpcre3 ...
Purging configuration files for libpcre3 ...
+Removing libpipeline1 ...
+Purging configuration files for libpipeline1 ...
Removing libunistring0 ...
Purging configuration files for libunistring0 ...
Removing libxml2 ...
@@ -485,17 +544,18 @@ Removing zlib1g-dev ...
└──────────────────────────────────────────────────────────────────────────────┘
Architecture: amd64
-Build-Space: 2984
+Build-Space: 3520
Build-Time: 10
Distribution: unstable
-Install-Time: 6
-Job: bwa_0.5.9~rc-1.dsc
+Install-Time: 23
+Job: bwa_0.6.0-1.dsc
+Lintian: pass
Package: bwa
-Package-Time: 22
-Source-Version: 0.5.9~rc-1
-Space: 2984
+Package-Time: 37
+Source-Version: 0.6.0-1
+Space: 3520
Status: successful
-Version: 0.5.9~rc-1
+Version: 0.6.0-1
────────────────────────────────────────────────────────────────────────────────
-Finished at 20110120-2146
-Build needed 00:00:22, 2984k disc space
+Finished at 20111114-1929
+Build needed 00:00:37, 3520k disc space
diff --git a/changes b/changes
index bd03e38..40409eb 100644
--- a/changes
+++ b/changes
@@ -2,51 +2,53 @@
Hash: SHA256
Format: 1.8
-Date: Thu, 20 Jan 2011 21:42:55 +0900
+Date: Mon, 14 Nov 2011 19:28:44 +0900
Source: bwa
Binary: bwa
Architecture: source amd64
-Version: 0.5.9~rc-1
-Distribution: experimental
+Version: 0.6.0-1
+Distribution: unstable
Urgency: low
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
Changed-By: Charles Plessy <plessy at debian.org>
Description:
bwa - Burrows-Wheeler Aligner
Changes:
- bwa (0.5.9~rc-1) experimental; urgency=low
+ bwa (0.6.0-1) experimental; urgency=low
.
- * New usptream release candidate.
+ [9ce640c] New upstream release (not to use in a production pipeline).
+ [e641dd6] Corrected the name of the file downloaded by uscan.
+ [4ada685] Pass Dpkg build flags to the compiler through Debhelper 9. Thanks, Niels Thykier!
Checksums-Sha1:
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- e5aae3445b5c49819adc4507262f2dae0215ef53 136252 bwa_0.5.9~rc-1_amd64.deb
+ 1bee688a34651a3dd4bd636a4b903d6406ed5c34 1927 bwa_0.6.0-1.dsc
+ bed98c8e29dbad66633d6cab78544dd887525fc1 129917 bwa_0.6.0.orig.tar.bz2
+ 53581a760b4ada06a5b9d2ad99e5266f189e6673 4313 bwa_0.6.0-1.debian.tar.gz
+ 8a4560b51febf50ba12cdaa195c05dbf292bc7a2 151896 bwa_0.6.0-1_amd64.deb
Checksums-Sha256:
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Files:
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- 8147f548ade48d867311bc79a23d2b46 112929 science optional bwa_0.5.9~rc.orig.tar.bz2
- e5420c4744ecbbffd5ebc49b4d1cef78 3594 science optional bwa_0.5.9~rc-1.debian.tar.gz
- 68751b8d48733482abdfb032f0d0cc7d 136252 science optional bwa_0.5.9~rc-1_amd64.deb
+ 9a336e657c14e6edf2fe418e8c6120cd 1927 science optional bwa_0.6.0-1.dsc
+ 89dc57e3791044e661742cad988eb203 129917 science optional bwa_0.6.0.orig.tar.bz2
+ 9b285d6b6415c7f7ebb806389243c809 4313 science optional bwa_0.6.0-1.debian.tar.gz
+ 53fe875efc2288841ba96fa51ef2efc8 151896 science optional bwa_0.6.0-1_amd64.deb
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diff --git a/dsc b/dsc
index 1062cab..fcfccd0 100644
--- a/dsc
+++ b/dsc
@@ -5,39 +5,41 @@ Format: 3.0 (quilt)
Source: bwa
Binary: bwa
Architecture: any
-Version: 0.5.9~rc-1
+Version: 0.6.0-1
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-Uploaders: Charles Plessy <plessy at debian.org>
+Uploaders: Charles Plessy <plessy at debian.org>, Andreas Tille <tille at debian.org>
Dm-Upload-Allowed: yes
Homepage: http://bio-bwa.sourceforge.net/
-Standards-Version: 3.9.1
-Vcs-Browser: http://git.debian.org/?p=debian-med/bwa.git;a=shortlog;h=refs/heads/experimental
-Vcs-Git: git://git.debian.org/git/debian-med/bwa.git
-Build-Depends: cdbs, debhelper (>= 8), zlib1g-dev
+Standards-Version: 3.9.2
+Vcs-Browser: http://git.debian.org/?p=debian-med/bwa.git
+Vcs-Git: git://git.debian.org/debian-med/bwa.git
+Build-Depends: debhelper (>= 8.9.4~), zlib1g-dev
+Package-List:
+ bwa deb science optional
Checksums-Sha1:
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- b2fe8be65c2b1bd4bb6941fa6e6ec80e8fbbf5f9 3594 bwa_0.5.9~rc-1.debian.tar.gz
+ bed98c8e29dbad66633d6cab78544dd887525fc1 129917 bwa_0.6.0.orig.tar.bz2
+ 53581a760b4ada06a5b9d2ad99e5266f189e6673 4313 bwa_0.6.0-1.debian.tar.gz
Checksums-Sha256:
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- d83a67d6e597931ba5e2e5482edfe68ad4fbccc50ec0878212be3c8609e7576c 3594 bwa_0.5.9~rc-1.debian.tar.gz
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Files:
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- e5420c4744ecbbffd5ebc49b4d1cef78 3594 bwa_0.5.9~rc-1.debian.tar.gz
+ 89dc57e3791044e661742cad988eb203 129917 bwa_0.6.0.orig.tar.bz2
+ 9b285d6b6415c7f7ebb806389243c809 4313 bwa_0.6.0-1.debian.tar.gz
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--
Burrows-Wheeler Aligner
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