[med-svn] [SCM] r-bioc-edger branch, master, updated. ubuntu/2.2.6-1ubuntu1-6-g48890d7

[Charles Plessy]

The following commit has been merged in the master branch:
commit 0e79ff9e08a31c4e303ea7c5a554527b0b547226
Author: Charles Plessy <plessy at debian.org>
Date:   Thu Nov 17 17:54:07 2011 +0900

    Removed User's Guide (no source) in agreement with the upstream authors.

diff --git a/debian/README.Debian b/debian/README.Debian
new file mode 100644
index 0000000..fe43dd2
--- /dev/null
+++ b/debian/README.Debian
@@ -0,0 +1,5 @@
+The file inst/doc/edgeRUsersGuide.pdf has been removed from the original
+upstream package, as it was not accompanied by its source.  It can be
+downloaded at the following URL.
+
+  http://www.bioconductor.org/packages/2.9/bioc/vignettes/edgeR/inst/doc/edgeRUsersGuide.pdf
diff --git a/debian/README.source b/debian/README.source
new file mode 100644
index 0000000..148847f
--- /dev/null
+++ b/debian/README.source
@@ -0,0 +1,3 @@
+The original upstream sources are repacked using the filter option of
+git-import-orig, see debian/gbp.conf, debian/copyright and
+debian/README.Debian.
diff --git a/debian/copyright b/debian/copyright
index c3115b4..758ed26 100644
--- a/debian/copyright
+++ b/debian/copyright
@@ -1,5 +1,7 @@
 Format: http://dep.debian.net/deps/dep5/
 Source: http://www.bioconductor.org/packages/2.8/bioc/src/contrib/edgeR_2.2.6.tar.gz
+Comment: inst/doc/edgeRUsersGuide.pdf is not accompanied by its source.
+Removed: inst/doc/edgeRUsersGuide.pdf
 
 Files: *
 Copyright: Mark Robinson <mrobinson at wehi.edu.au>, Davis McCarthy <dmccarthy at wehi.edu.au>, Gordon Smyth <smyth at wehi.edu.au>
@@ -19,3 +21,4 @@ License: LGPL-2+
  Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA  02110-1301  USA
 Comment: On Debian systems, a copy of the GNU Library General Public version 2
  is available in ‘/usr/share/common-licenses/LGPL-2’.
+
diff --git a/debian/gbp.conf b/debian/gbp.conf
index f3b5f87..b78630d 100644
--- a/debian/gbp.conf
+++ b/debian/gbp.conf
@@ -4,6 +4,12 @@
 # use pristine-tar:
 pristine-tar = True
 
+[git-import-orig]
+# import filter:
+filter = ['inst/doc/edgeRUsersGuide.pdf']
+# filter out files from tarball passed to pristine tar:
+filter-pristine-tar = True
+
 [git-dch]
 # Include 7 digits of the commit ID in the changelog entry:
 id-length = 7

-- 
empirical analysis of digital gene expression data in R