[med-svn] [SCM] r-bioc-edger branch, meta, updated. meta/2.2.6-1-1-gbded7c2
Charles Plessy
plessy at debian.org
Fri Nov 18 05:00:20 UTC 2011
The following commit has been merged in the meta branch:
commit bded7c2d06ee5fa1c0b75a92d223fb81b0c3efb5
Author: Charles Plessy <plessy at debian.org>
Date: Fri Nov 18 13:57:32 2011 +0900
Uploading r-bioc-edger_2.4.0~dfsg-1_amd64.changes.
diff --git a/amd64.changes b/amd64.changes
index 7924dab..7837d83 100644
--- a/amd64.changes
+++ b/amd64.changes
@@ -2,11 +2,11 @@
Hash: SHA256
Format: 1.8
-Date: Wed, 19 Oct 2011 15:29:52 +0900
+Date: Fri, 18 Nov 2011 13:47:35 +0900
Source: r-bioc-edger
Binary: r-bioc-edger
Architecture: source all
-Version: 2.2.6-1
+Version: 2.4.0~dfsg-1
Distribution: unstable
Urgency: low
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
@@ -14,40 +14,41 @@ Changed-By: Charles Plessy <plessy at debian.org>
Description:
r-bioc-edger - Empirical analysis of digital gene expression data in R
Changes:
- r-bioc-edger (2.2.6-1) unstable; urgency=low
+ r-bioc-edger (2.4.0~dfsg-1) unstable; urgency=low
.
- [c9512e2] New upstream release.
- [40876f8] Compress binary package with xz.
+ [16d49d0] Bioconductor release 2.9.
+ [0e79ff9] Removed User's Guide (no source) in agreement with the
+ upstream authors, see “README.Debian”.
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- c72d514bc4a1a090af85981d41fac96715ffed4b 2443 r-bioc-edger_2.2.6-1.diff.gz
- e89a6f92d6d0efc623c924c897adbdaee3dac7ea 2349128 r-bioc-edger_2.2.6-1_all.deb
+ 3662fd778a4f5071960d42ac71b03e4efed35a79 2072 r-bioc-edger_2.4.0~dfsg-1.dsc
+ 3f303b9663aea9f97f80eb24e8dcb54d4d54c186 401286 r-bioc-edger_2.4.0~dfsg.orig.tar.gz
+ aea3ebd0959d1746cc0100c7d1d99e9d66ed82c7 2997 r-bioc-edger_2.4.0~dfsg-1.diff.gz
+ 18ae45dd85bd1ea791463dcfe9cee71e76e77e1f 544866 r-bioc-edger_2.4.0~dfsg-1_all.deb
Checksums-Sha256:
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- 19956af815df84626848da3420d372db67b282c95c8f3b4f1381f634e46f327d 2443 r-bioc-edger_2.2.6-1.diff.gz
- 92f76af94c1a46f3fd2b30221de05e9e59bdd5d615ffe973285f3fb62464d2fe 2349128 r-bioc-edger_2.2.6-1_all.deb
+ eeb40f986afae0cd32021434ce991d127e2f7e4f2698edac9c05c0b376bb3f24 2072 r-bioc-edger_2.4.0~dfsg-1.dsc
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+ ad8f1cbeef39c3d03913855190a1b229bb4edc5f8ecdb4c21972f5eb7f9ccaae 2997 r-bioc-edger_2.4.0~dfsg-1.diff.gz
+ 7fd61329bf9e28d1bcefa5ad84b7cc8521f809bbade112ed524c51d23ccf740f 544866 r-bioc-edger_2.4.0~dfsg-1_all.deb
Files:
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- 75de42f2f81018a70330bf129fcabfb0 2320529 gnu-r optional r-bioc-edger_2.2.6.orig.tar.gz
- fc190d545c8067c22341b7f7dd5f38d8 2443 gnu-r optional r-bioc-edger_2.2.6-1.diff.gz
- 781f3cf4683ecd1842dcc93dcae32752 2349128 gnu-r optional r-bioc-edger_2.2.6-1_all.deb
+ 87cc8a8497e8802b5350c02c08eefbff 2072 gnu-r optional r-bioc-edger_2.4.0~dfsg-1.dsc
+ abf5fc133e11e5f84d9e406e71754e3d 401286 gnu-r optional r-bioc-edger_2.4.0~dfsg.orig.tar.gz
+ 5b3e4ed543ad5d478185953b602a9aab 2997 gnu-r optional r-bioc-edger_2.4.0~dfsg-1.diff.gz
+ 3402e7c58237bf5e7bae4da54521ccde 544866 gnu-r optional r-bioc-edger_2.4.0~dfsg-1_all.deb
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diff --git a/amd64.log b/amd64.log
index 6080624..ac0ead1 100644
--- a/amd64.log
+++ b/amd64.log
@@ -1,18 +1,18 @@
sbuild (Debian sbuild) 0.62.5 (13 Jul 2011) on anx191
╔══════════════════════════════════════════════════════════════════════════════╗
-║ r-bioc-edger 2.2.6-1 (amd64) 19 Oct 2011 15:30 ║
+║ r-bioc-edger 2.4.0~dfsg-1 (amd64) 18 Nov 2011 13:51 ║
╚══════════════════════════════════════════════════════════════════════════════╝
Package: r-bioc-edger
-Version: 2.2.6-1
-Source Version: 2.2.6-1
+Version: 2.4.0~dfsg-1
+Source Version: 2.4.0~dfsg-1
Distribution: unstable
Architecture: amd64
-I: NOTICE: Log filtering will replace 'build/r-bioc-edger-CMzSoB/r-bioc-edger-2.2.6' with '«PKGBUILDDIR»'
-I: NOTICE: Log filtering will replace 'build/r-bioc-edger-CMzSoB' with '«BUILDDIR»'
-I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/sid-amd64-sbuild-c13d5073-76d7-47d3-a86c-588c45b34881' with '«CHROOT»'
+I: NOTICE: Log filtering will replace 'build/r-bioc-edger-ZqRJjb/r-bioc-edger-2.4.0~dfsg' with '«PKGBUILDDIR»'
+I: NOTICE: Log filtering will replace 'build/r-bioc-edger-ZqRJjb' with '«BUILDDIR»'
+I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/sid-amd64-sbuild-8c157305-d343-47b1-9c99-84eeb2dae6c2' with '«CHROOT»'
┌──────────────────────────────────────────────────────────────────────────────┐
│ Update chroot │
@@ -35,14 +35,14 @@ Reading state information...
Local sources
─────────────
-r-bioc-edger_2.2.6-1.dsc exists in .; copying to chroot
+r-bioc-edger_2.4.0~dfsg-1.dsc exists in .; copying to chroot
Check arch
──────────
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
-dpkg-deb: building package `sbuild-build-depends-core-dummy' in `/«BUILDDIR»/resolver-xdS4Ue/apt_archive/sbuild-build-depends-core-dummy.deb'.
+dpkg-deb: building package `sbuild-build-depends-core-dummy' in `/«BUILDDIR»/resolver-G_G3Lt/apt_archive/sbuild-build-depends-core-dummy.deb'.
OK
Reading package lists...
@@ -58,7 +58,7 @@ sbuild-build-depends-core-dummy is already the newest version.
0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
Merged Build-Depends: base-files, base-passwd, bash, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, ncurses-base, ncurses-bin, perl-base, sed, login, sysvinit-utils, sysvinit, tar, bsdutils, mount, util-linux, libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 8), cdbs, r-base-dev (>= 2.10.0), r-bioc-limma
Filtered Build-Depends: base-files, base-passwd, bash, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, ncurses-base, ncurses-bin, perl-base, sed, login, sysvinit-utils, sysvinit, tar, bsdutils, mount, util-linux, libc6-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 8), cdbs, r-base-dev (>= 2.10.0), r-bioc-limma
-dpkg-deb: building package `sbuild-build-depends-r-bioc-edger-dummy' in `/«BUILDDIR»/resolver-w8_iEa/apt_archive/sbuild-build-depends-r-bioc-edger-dummy.deb'.
+dpkg-deb: building package `sbuild-build-depends-r-bioc-edger-dummy' in `/«BUILDDIR»/resolver-iI1vHB/apt_archive/sbuild-build-depends-r-bioc-edger-dummy.deb'.
OK
Reading package lists...
@@ -108,19 +108,25 @@ The following NEW packages will be installed:
ttf-dejavu-core ucf unzip x11-common xdg-utils zip zlib1g-dev
debconf: delaying package configuration, since apt-utils is not installed
0 upgraded, 76 newly installed, 0 to remove and 0 not upgraded.
-Need to get 0 B/58.2 MB of archives.
-After this operation, 130 MB of additional disk space will be used.
+Need to get 0 B/58.4 MB of archives.
+After this operation, 129 MB of additional disk space will be used.
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+(Reading database ... 10825 files and directories currently installed.)
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+Unpacking libthai-data (from .../libthai-data_0.1.16-2_all.deb) ...
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-Unpacking libthai0 (from .../libthai0_0.1.15-2_amd64.deb) ...
+Unpacking libthai0 (from .../libthai0_0.1.16-2_amd64.deb) ...
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@@ -209,11 +209,11 @@ Unpacking intltool-debian (from .../intltool-debian_0.35.0+20060710.1_all.deb) .
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+Unpacking libtinfo-dev (from .../libtinfo-dev_5.9-4_amd64.deb) ...
Selecting previously unselected package libncurses5-dev.
-Unpacking libncurses5-dev (from .../libncurses5-dev_5.9-2_amd64.deb) ...
+Unpacking libncurses5-dev (from .../libncurses5-dev_5.9-4_amd64.deb) ...
Selecting previously unselected package libpaper1.
Unpacking libpaper1 (from .../libpaper1_1.1.24+nmu1_amd64.deb) ...
Selecting previously unselected package libpaper-utils.
@@ -257,70 +257,70 @@ Unpacking tcl8.5 (from .../tcl8.5_8.5.10-1_amd64.deb) ...
Selecting previously unselected package tk8.5.
Unpacking tk8.5 (from .../tk8.5_8.5.10-1_amd64.deb) ...
Selecting previously unselected package r-base-core.
-Unpacking r-base-core (from .../r-base-core_2.14.0~20111015-1_amd64.deb) ...
+Unpacking r-base-core (from .../r-base-core_2.14.0-1_amd64.deb) ...
Selecting previously unselected package r-base-dev.
-Unpacking r-base-dev (from .../r-base-dev_2.14.0~20111015-1_all.deb) ...
+Unpacking r-base-dev (from .../r-base-dev_2.14.0-1_all.deb) ...
Selecting previously unselected package r-bioc-limma.
-Unpacking r-bioc-limma (from .../r-bioc-limma_3.8.3-1_amd64.deb) ...
+Unpacking r-bioc-limma (from .../r-bioc-limma_3.10.0-1_amd64.deb) ...
Selecting previously unselected package sbuild-build-depends-r-bioc-edger-dummy.
Unpacking sbuild-build-depends-r-bioc-edger-dummy (from .../sbuild-build-depends-r-bioc-edger-dummy.deb) ...
-Setting up libpipeline1 (1.2.0-3) ...
+Setting up libpipeline1 (1.2.0-5) ...
Setting up libpcre3 (8.12-4) ...
-Setting up libdatrie1 (0.2.4-3) ...
-Setting up libexpat1 (2.0.1-7) ...
-Setting up libfreetype6 (2.4.6-2) ...
+Setting up libglib2.0-0 (2.28.8-1) ...
+No schema files found: doing nothing.
+Setting up libxml2 (2.7.8.dfsg-5) ...
+Setting up libcroco3 (0.6.2-2) ...
+Setting up libdatrie1 (0.2.5-2) ...
+Setting up libexpat1 (2.0.1-7.2) ...
+Setting up libfreetype6 (2.4.8-1) ...
Setting up ucf (3.0025+nmu2) ...
Setting up ttf-dejavu-core (2.33-2) ...
Setting up fontconfig-config (2.8.0-3) ...
Setting up libfontconfig1 (2.8.0-3) ...
-Setting up libgfortran3 (4.6.1-15) ...
+Setting up libgfortran3 (4.6.2-4) ...
Setting up x11-common (1:7.6+9) ...
All runlevel operations denied by policy
invoke-rc.d: policy-rc.d denied execution of start.
Setting up libice6 (2:1.0.7-2) ...
-Setting up libpixman-1-0 (0.22.2-1) ...
-Setting up libxau6 (1:1.0.6-3) ...
-Setting up libxdmcp6 (1:1.1.0-3) ...
-Setting up libxcb1 (1.7-3) ...
-Setting up libx11-data (2:1.4.4-2) ...
-Setting up libx11-6 (2:1.4.4-2) ...
-Setting up libxcb-render0 (1.7-3) ...
-Setting up libxcb-shm0 (1.7-3) ...
+Setting up libpixman-1-0 (0.24.0-1) ...
+Setting up libxau6 (1:1.0.6-4) ...
+Setting up libxdmcp6 (1:1.1.0-4) ...
+Setting up libxcb1 (1.7-4) ...
+Setting up libx11-data (2:1.4.4-4) ...
+Setting up libx11-6 (2:1.4.4-4) ...
+Setting up libxcb-render0 (1.7-4) ...
+Setting up libxcb-shm0 (1.7-4) ...
Setting up libxrender1 (1:0.9.6-2) ...
Setting up libcairo2 (1.10.2-6.1) ...
-Setting up libglib2.0-0 (2.28.8-1) ...
-No schema files found: doing nothing.
-Setting up libthai-data (0.1.15-2) ...
-Setting up libthai0 (0.1.15-2) ...
+Setting up libthai-data (0.1.16-2) ...
+Setting up libthai0 (0.1.16-2) ...
Setting up libxft2 (2.2.0-3) ...
Setting up fontconfig (2.8.0-3) ...
Cleaning up old fontconfig caches... done.
Regenerating fonts cache... done.
-Setting up libpango1.0-0 (1.29.4-1) ...
+Setting up libpango1.0-0 (1.29.4-2) ...
Setting up libpcrecpp0 (8.12-4) ...
Setting up libsm6 (2:1.2.0-2) ...
Setting up libjpeg8 (8c-2) ...
Setting up libtiff4 (3.9.5-2) ...
+Setting up libunistring0 (0.9.3-5) ...
Setting up libxext6 (2:1.3.0-3) ...
Setting up libxss1 (1:1.2.1-2) ...
Setting up libxt6 (1:1.1.1-2) ...
Setting up groff-base (1.21-6) ...
-Setting up man-db (2.6.0.2-2) ...
+Setting up man-db (2.6.0.2-3) ...
Building database of manual pages ...
-Setting up libmagic1 (5.09-1) ...
-Setting up file (5.09-1) ...
+Setting up libmagic1 (5.09-2) ...
+Setting up file (5.09-2) ...
Setting up gettext-base (0.18.1.1-5) ...
-Setting up libxml2 (2.7.8.dfsg-5) ...
Setting up cdbs (0.4.99) ...
Setting up html2text (1.3.2a-15) ...
-Setting up libcroco3 (0.6.2-1) ...
-Setting up libunistring0 (0.9.3-4) ...
Setting up gettext (0.18.1.1-5) ...
Setting up intltool-debian (0.35.0+20060710.1) ...
Setting up po-debconf (1.0.16+nmu1) ...
-Setting up debhelper (8.9.8) ...
-Setting up dpatch (2.0.32) ...
-Setting up gfortran-4.6 (4.6.1-15) ...
+Setting up debhelper (8.9.11) ...
+Setting up dpatch (2.0.33) ...
+Setting up gfortran-4.6 (4.6.2-4) ...
Setting up gfortran (4:4.6.1-3) ...
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode.
Setting up libblas3gf (1.2.20110419-2) ...
@@ -333,8 +333,8 @@ Setting up liblapack3gf (3.3.1-1) ...
update-alternatives: using /usr/lib/lapack/liblapack.so.3gf to provide /usr/lib/liblapack.so.3gf (liblapack.so.3gf) in auto mode.
Setting up liblapack-dev (3.3.1-1) ...
update-alternatives: using /usr/lib/lapack/liblapack.so to provide /usr/lib/liblapack.so (liblapack.so) in auto mode.
-Setting up libtinfo-dev (5.9-2) ...
-Setting up libncurses5-dev (5.9-2) ...
+Setting up libtinfo-dev (5.9-4) ...
+Setting up libncurses5-dev (5.9-4) ...
Setting up libpaper1 (1.1.24+nmu1) ...
Creating config file /etc/papersize with new version
@@ -351,12 +351,12 @@ Setting up tcl8.5 (8.5.10-1) ...
update-alternatives: using /usr/bin/tclsh8.5 to provide /usr/bin/tclsh (tclsh) in auto mode.
Setting up tk8.5 (8.5.10-1) ...
update-alternatives: using /usr/bin/wish8.5 to provide /usr/bin/wish (wish) in auto mode.
-Setting up r-base-core (2.14.0~20111015-1) ...
+Setting up r-base-core (2.14.0-1) ...
Setting R_PAPERSIZE_USER default to 'a4'
Creating config file /etc/R/Renviron with new version
-Setting up r-base-dev (2.14.0~20111015-1) ...
-Setting up r-bioc-limma (3.8.3-1) ...
+Setting up r-base-dev (2.14.0-1) ...
+Setting up r-bioc-limma (3.10.0-1) ...
Setting up sbuild-build-depends-r-bioc-edger-dummy (0.invalid.0) ...
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -364,8 +364,8 @@ Setting up sbuild-build-depends-r-bioc-edger-dummy (0.invalid.0) ...
└──────────────────────────────────────────────────────────────────────────────┘
Kernel: Linux 2.6.39-bpo.2-amd64 amd64 (x86_64)
-Toolchain package versions: binutils_2.21.90.20111004-2 dpkg-dev_1.16.1.1 g++-4.6_4.6.1-15 gcc-4.6_4.6.1-15 libc6-dev_2.13-21 libstdc++6_4.6.1-15 libstdc++6-4.6-dev_4.6.1-15 linux-libc-dev_3.0.0-5
-Package versions: apt_0.8.15.9 base-files_6.5 base-passwd_3.5.23 bash_4.1-3 binutils_2.21.90.20111004-2 bsdmainutils_8.2.3 bsdutils_1:2.19.1-5 build-essential_11.5 bzip2_1.0.5-7 cdbs_0.4.99 coreutils_8.13-3 cpp_4:4.6.1-3 cpp-4.6_4.6.1-15 dash_0.5.7-2 debconf_1.5.41 debconf-i18n_1.5.41 debfoster_2.7-1.1 debhelper_8.9.8 debian-archive-keyring_2010.08.28 debianutils_4.0.4 diffutils_1:3.2-1 dpatch_2.0.32 dpkg_1.16.1.1 dpkg-dev_1.16.1.1 e2fslibs_1.42~WIP-2011-10-16-1 e2fsprogs_1.42~WIP-2011-10-16-1 fakeroot_1.18.1-1 file_5.09-1 findutils_4.4.2-1+b1 fontconfig_2.8.0-3 fontconfig-config_2.8.0-3 g++_4:4.6.1-3 g++-4.6_4.6.1-15 gcc_4:4.6.1-3 gcc-4.6_4.6.1-15 gcc-4.6-base_4.6.1-15 gettext_0.18.1.1-5 gettext-base_0.18.1.1-5 gfortran_4:4.6.1-3 gfortran-4.6_4.6.1-15 gnupg_1.4.11-3 gpgv_1.4.11-3 grep_2.9-2 groff-base_1.21-6 gzip_1.4-1 hostname_3.06 html2text_1.3.2a-15 initscripts_2.88dsf-13.12 insserv_1.14.0-2.1 intltool-debian_0.35.0+20060710.1 libacl1_2.2.51-3 libattr1_1:2.4.46-3 libblas-dev_1.2.20110419-2 libblas3gf_1.2.20110419-2 libblkid1_2.19.1-5 libbz2-1.0_1.0.5-7 libbz2-dev_1.0.5-7 libc-bin_2.13-21 libc-dev-bin_2.13-21 libc6_2.13-21 libc6-dev_2.13-21 libcairo2_1.10.2-6.1 libclass-isa-perl_0.36-2 libcomerr2_1.42~WIP-2011-10-16-1 libcroco3_0.6.2-1 libdatrie1_0.2.4-3 libdb5.1_5.1.25-11 libdpkg-perl_1.16.1.1 libexpat1_2.0.1-7 libfontconfig1_2.8.0-3 libfreetype6_2.4.6-2 libgc1c2_1:7.1-8 libgcc1_1:4.6.1-15 libgdbm3_1.8.3-10 libgfortran3_4.6.1-15 libglib2.0-0_2.28.8-1 libgmp10_2:5.0.2+dfsg-1 libgomp1_4.6.1-15 libgpm2_1.20.4-4 libice6_2:1.0.7-2 libjpeg8_8c-2 libjpeg8-dev_8c-2 liblapack-dev_3.3.1-1 liblapack3gf_3.3.1-1 liblocale-gettext-perl_1.05-7 liblzma2_5.1.1alpha+20110809-2 libmagic1_5.09-1 libmount1_2.19.1-5 libmpc2_0.9-4 libmpfr4_3.1.0-2 libncurses5_5.9-2 libncurses5-dev_5.9-2 libpam-modules_1.1.3-4 libpam-modules-bin_1.1.3-4 libpam-runtime_1.1.3-4 libpam0g_1.1.3-4 libpango1.0-0_1.29.4-1 libpaper-utils_1.1.24+nmu1 libpaper1_1.1.24+nmu1 libpcre3_8.12-4 libpcre3-dev_8.12-4 libpcrecpp0_8.12-4 libpipeline1_1.2.0-3 libpixman-1-0_0.22.2-1 libpng12-0_1.2.46-3 libpng12-dev_1.2.46-3 libpod-plainer-perl_1.03-1 libquadmath0_4.6.1-15 libreadline-dev_6.2-7 libreadline6_6.2-7 libreadline6-dev_6.2-7 libselinux1_2.1.0-1 libsepol1_2.1.0-1.1 libslang2_2.2.4-3 libsm6_2:1.2.0-2 libss2_1.42~WIP-2011-10-16-1 libstdc++6_4.6.1-15 libstdc++6-4.6-dev_4.6.1-15 libswitch-perl_2.16-2 libtext-charwidth-perl_0.04-7 libtext-iconv-perl_1.7-4 libtext-wrapi18n-perl_0.06-7 libthai-data_0.1.15-2 libthai0_0.1.15-2 libtiff4_3.9.5-2 libtimedate-perl_1.2000-1 libtinfo-dev_5.9-2 libtinfo5_5.9-2 libunistring0_0.9.3-4 libusb-0.1-4_2:0.1.12-19 libuuid1_2.19.1-5 libx11-6_2:1.4.4-2 libx11-data_2:1.4.4-2 libxau6_1:1.0.6-3 libxcb-render0_1.7-3 libxcb-shm0_1.7-3 libxcb1_1.7-3 libxdmcp6_1:1.1.0-3 libxext6_2:1.3.0-3 libxft2_2.2.0-3 libxml2_2.7.8.dfsg-5 libxrender1_1:0.9.6-2 libxss1_1:1.2.1-2 libxt6_1:1.1.1-2 linux-libc-dev_3.0.0-5 login_1:4.1.4.2+svn3283-3 lsb-base_3.2-28 make_3.81-8.1 man-db_2.6.0.2-2 mawk_1.3.3-15 mount_2.19.1-5 multiarch-support_2.13-21 ncurses-base_5.9-2 ncurses-bin_5.9-2 passwd_1:4.1.4.2+svn3283-3 patch_2.6.1-2 perl_5.12.4-6 perl-base_5.12.4-6 perl-modules_5.12.4-6 po-debconf_1.0.16+nmu1 r-base-core_2.14.0~20111015-1 r-base-dev_2.14.0~20111015-1 r-bioc-limma_3.8.3-1 readline-common_6.2-7 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-r-bioc-edger-dummy_0.invalid.0 sed_4.2.1-9 sensible-utils_0.0.6 sysv-rc_2.88dsf-13.12 sysvinit_2.88dsf-13.12 sysvinit-utils_2.88dsf-13.12 tar_1.26-2 tcl8.5_8.5.10-1 tk8.5_8.5.10-1 ttf-dejavu-core_2.33-2 tzdata_2011l-2 ucf_3.0025+nmu2 unzip_6.0-5 util-linux_2.19.1-5 x11-common_1:7.6+9 xdg-utils_1.1.0~rc1-2 xz-utils_5.1.1alpha+20110809-2 zip_3.0-4 zlib1g_1:1.2.3.4.dfsg-3 zlib1g-dev_1:1.2.3.4.dfsg-3
+Toolchain package versions: binutils_2.21.90.20111025-1 dpkg-dev_1.16.1.1 g++-4.6_4.6.2-4 gcc-4.6_4.6.2-4 libc6-dev_2.13-21 libstdc++6_4.6.2-4 libstdc++6-4.6-dev_4.6.2-4 linux-libc-dev_3.1.1-1
+Package versions: apt_0.8.15.9 base-files_6.5 base-passwd_3.5.23 bash_4.1-3 binutils_2.21.90.20111025-1 bsdmainutils_8.2.3 bsdutils_1:2.19.1-5 build-essential_11.5 bzip2_1.0.5-7 cdbs_0.4.99 coreutils_8.13-3 cpp_4:4.6.1-3 cpp-4.6_4.6.2-4 dash_0.5.7-2 debconf_1.5.41 debfoster_2.7-1.1 debhelper_8.9.11 debian-archive-keyring_2010.08.28 debianutils_4.0.4 diffutils_1:3.2-1 dpatch_2.0.33 dpkg_1.16.1.1 dpkg-dev_1.16.1.1 e2fslibs_1.42~WIP-2011-10-16-1 e2fsprogs_1.42~WIP-2011-10-16-1 fakeroot_1.18.1-1 file_5.09-2 findutils_4.4.2-1+b1 fontconfig_2.8.0-3 fontconfig-config_2.8.0-3 g++_4:4.6.1-3 g++-4.6_4.6.2-4 gcc_4:4.6.1-3 gcc-4.6_4.6.2-4 gcc-4.6-base_4.6.2-4 gettext_0.18.1.1-5 gettext-base_0.18.1.1-5 gfortran_4:4.6.1-3 gfortran-4.6_4.6.2-4 gnupg_1.4.11-3 gpgv_1.4.11-3 grep_2.9-2 groff-base_1.21-6 gzip_1.4-2 hostname_3.06 html2text_1.3.2a-15 initscripts_2.88dsf-13.13 insserv_1.14.0-2.1 intltool-debian_0.35.0+20060710.1 libacl1_2.2.51-4 libattr1_1:2.4.46-3 libblas-dev_1.2.20110419-2 libblas3gf_1.2.20110419-2 libblkid1_2.19.1-5 libbz2-1.0_1.0.5-7 libbz2-dev_1.0.5-7 libc-bin_2.13-21 libc-dev-bin_2.13-21 libc6_2.13-21 libc6-dev_2.13-21 libcairo2_1.10.2-6.1 libclass-isa-perl_0.36-2 libcomerr2_1.42~WIP-2011-10-16-1 libcroco3_0.6.2-2 libdatrie1_0.2.5-2 libdb5.1_5.1.25-11 libdpkg-perl_1.16.1.1 libexpat1_2.0.1-7.2 libfontconfig1_2.8.0-3 libfreetype6_2.4.8-1 libgc1c2_1:7.1-8 libgcc1_1:4.6.2-4 libgdbm3_1.8.3-10 libgfortran3_4.6.2-4 libglib2.0-0_2.28.8-1 libgmp10_2:5.0.2+dfsg-2 libgomp1_4.6.2-4 libgpm2_1.20.4-4 libice6_2:1.0.7-2 libjpeg8_8c-2 libjpeg8-dev_8c-2 liblapack-dev_3.3.1-1 liblapack3gf_3.3.1-1 liblzma2_5.1.1alpha+20110809-2 liblzma5_5.1.1alpha+20110809-3 libmagic1_5.09-2 libmount1_2.19.1-5 libmpc2_0.9-4 libmpfr4_3.1.0-3 libncurses5_5.9-4 libncurses5-dev_5.9-4 libpam-modules_1.1.3-6 libpam-modules-bin_1.1.3-6 libpam-runtime_1.1.3-6 libpam0g_1.1.3-6 libpango1.0-0_1.29.4-2 libpaper-utils_1.1.24+nmu1 libpaper1_1.1.24+nmu1 libpcre3_8.12-4 libpcre3-dev_8.12-4 libpcrecpp0_8.12-4 libpipeline1_1.2.0-5 libpixman-1-0_0.24.0-1 libpng12-0_1.2.46-3 libpng12-dev_1.2.46-3 libpod-plainer-perl_1.03-1 libquadmath0_4.6.2-4 libreadline-dev_6.2-7 libreadline6_6.2-7 libreadline6-dev_6.2-7 libselinux1_2.1.0-4 libsepol1_2.1.0-1.1 libslang2_2.2.4-3 libsm6_2:1.2.0-2 libss2_1.42~WIP-2011-10-16-1 libstdc++6_4.6.2-4 libstdc++6-4.6-dev_4.6.2-4 libswitch-perl_2.16-2 libthai-data_0.1.16-2 libthai0_0.1.16-2 libtiff4_3.9.5-2 libtimedate-perl_1.2000-1 libtinfo-dev_5.9-4 libtinfo5_5.9-4 libunistring0_0.9.3-5 libusb-0.1-4_2:0.1.12-19 libuuid1_2.19.1-5 libx11-6_2:1.4.4-4 libx11-data_2:1.4.4-4 libxau6_1:1.0.6-4 libxcb-render0_1.7-4 libxcb-shm0_1.7-4 libxcb1_1.7-4 libxdmcp6_1:1.1.0-4 libxext6_2:1.3.0-3 libxft2_2.2.0-3 libxml2_2.7.8.dfsg-5 libxrender1_1:0.9.6-2 libxss1_1:1.2.1-2 libxt6_1:1.1.1-2 linux-libc-dev_3.1.1-1 login_1:4.1.4.2+svn3283-3 lsb-base_3.2-28 make_3.81-8.1 man-db_2.6.0.2-3 mawk_1.3.3-16 mount_2.19.1-5 multiarch-support_2.13-21 ncurses-base_5.9-4 ncurses-bin_5.9-4 passwd_1:4.1.4.2+svn3283-3 patch_2.6.1-2 perl_5.14.2-4 perl-base_5.14.2-4 perl-modules_5.14.2-4 po-debconf_1.0.16+nmu1 r-base-core_2.14.0-1 r-base-dev_2.14.0-1 r-bioc-limma_3.10.0-1 readline-common_6.2-7 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-r-bioc-edger-dummy_0.invalid.0 sed_4.2.1-9 sensible-utils_0.0.6 sysv-rc_2.88dsf-13.13 sysvinit_2.88dsf-13.13 sysvinit-utils_2.88dsf-13.13 tar_1.26-3 tcl8.5_8.5.10-1 tk8.5_8.5.10-1 ttf-dejavu-core_2.33-2 tzdata_2011n-1 ucf_3.0025+nmu2 unzip_6.0-5 util-linux_2.19.1-5 x11-common_1:7.6+9 xdg-utils_1.1.0~rc1-2 xz-utils_5.1.1alpha+20110809-3 zip_3.0-4 zlib1g_1:1.2.3.4.dfsg-3 zlib1g-dev_1:1.2.3.4.dfsg-3
┌──────────────────────────────────────────────────────────────────────────────┐
│ Build │
@@ -375,10 +375,10 @@ Package versions: apt_0.8.15.9 base-files_6.5 base-passwd_3.5.23 bash_4.1-3 binu
Unpack source
─────────────
-dpkg-source: warning: extracting unsigned source package (r-bioc-edger_2.2.6-1.dsc)
-dpkg-source: info: extracting r-bioc-edger in r-bioc-edger-2.2.6
-dpkg-source: info: unpacking r-bioc-edger_2.2.6.orig.tar.gz
-dpkg-source: info: applying r-bioc-edger_2.2.6-1.diff.gz
+dpkg-source: warning: extracting unsigned source package (r-bioc-edger_2.4.0~dfsg-1.dsc)
+dpkg-source: info: extracting r-bioc-edger in r-bioc-edger-2.4.0~dfsg
+dpkg-source: info: unpacking r-bioc-edger_2.4.0~dfsg.orig.tar.gz
+dpkg-source: info: applying r-bioc-edger_2.4.0~dfsg-1.diff.gz
Check disc space
────────────────
@@ -395,20 +395,21 @@ SCHROOT_CHROOT_NAME=sid-amd64-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=1000
SCHROOT_GROUP=charles
-SCHROOT_SESSION_ID=sid-amd64-sbuild-c13d5073-76d7-47d3-a86c-588c45b34881
+SCHROOT_SESSION_ID=sid-amd64-sbuild-8c157305-d343-47b1-9c99-84eeb2dae6c2
SCHROOT_UID=31051
SCHROOT_USER=charles
SHELL=/bin/sh
-TERM=xterm-color
+TERM=xterm
USER=charles
+USERNAME=charles
dpkg-buildpackage
─────────────────
dpkg-buildpackage: source package r-bioc-edger
-dpkg-buildpackage: source version 2.2.6-1
+dpkg-buildpackage: source version 2.4.0~dfsg-1
dpkg-buildpackage: source changed by Charles Plessy <plessy at debian.org>
- dpkg-source --before-build r-bioc-edger-2.2.6
+ dpkg-source --before-build r-bioc-edger-2.4.0~dfsg
dpkg-buildpackage: host architecture amd64
fakeroot debian/rules clean
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
@@ -434,12 +435,12 @@ if test -d src; then \
xargs --no-run-if-empty -r rm; \
fi
rm -f config.log config.status
- dpkg-source -b r-bioc-edger-2.2.6
+ dpkg-source -b r-bioc-edger-2.4.0~dfsg
dpkg-source: warning: no source format specified in debian/source/format, see dpkg-source(1)
dpkg-source: info: using source format `1.0'
-dpkg-source: info: building r-bioc-edger using existing r-bioc-edger_2.2.6.orig.tar.gz
-dpkg-source: info: building r-bioc-edger in r-bioc-edger_2.2.6-1.diff.gz
-dpkg-source: info: building r-bioc-edger in r-bioc-edger_2.2.6-1.dsc
+dpkg-source: info: building r-bioc-edger using existing r-bioc-edger_2.4.0~dfsg.orig.tar.gz
+dpkg-source: info: building r-bioc-edger in r-bioc-edger_2.4.0~dfsg-1.diff.gz
+dpkg-source: info: building r-bioc-edger in r-bioc-edger_2.4.0~dfsg-1.dsc
debian/rules build
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
test -x debian/rules
@@ -501,7 +502,7 @@ if test -f debian/overrides; then \
Adding cdbs dependencies to debian/r-bioc-edger.substvars
dh_installdirs -pr-bioc-edger
echo "R:Depends=r-base-core (>= 2.14.0~)" >> debian/r-bioc-edger.substvars
-dh_installdocs -pr-bioc-edger
+dh_installdocs -pr-bioc-edger ./NEWS
dh_installexamples -pr-bioc-edger
dh_installman -pr-bioc-edger
dh_installinfo -pr-bioc-edger
@@ -532,13 +533,13 @@ dh_shlibdeps -pr-bioc-edger
dh_gencontrol -pr-bioc-edger
dh_md5sums -pr-bioc-edger
dh_builddeb -pr-bioc-edger -- -Z xz
-dpkg-deb: building package `r-bioc-edger' in `../r-bioc-edger_2.2.6-1_all.deb'.
- dpkg-genchanges >../r-bioc-edger_2.2.6-1_amd64.changes
+dpkg-deb: building package `r-bioc-edger' in `../r-bioc-edger_2.4.0~dfsg-1_all.deb'.
+ dpkg-genchanges >../r-bioc-edger_2.4.0~dfsg-1_amd64.changes
dpkg-genchanges: including full source code in upload
- dpkg-source --after-build r-bioc-edger-2.2.6
+ dpkg-source --after-build r-bioc-edger-2.4.0~dfsg
dpkg-buildpackage: full upload (original source is included)
────────────────────────────────────────────────────────────────────────────────
-Build finished at 20111019-1532
+Build finished at 20111118-1353
Finished
────────
@@ -550,15 +551,15 @@ I: Built successfully
└──────────────────────────────────────────────────────────────────────────────┘
-r-bioc-edger_2.2.6-1_amd64.changes:
-───────────────────────────────────
+r-bioc-edger_2.4.0~dfsg-1_amd64.changes:
+────────────────────────────────────────
Format: 1.8
-Date: Wed, 19 Oct 2011 15:29:52 +0900
+Date: Fri, 18 Nov 2011 13:47:35 +0900
Source: r-bioc-edger
Binary: r-bioc-edger
Architecture: source all
-Version: 2.2.6-1
+Version: 2.4.0~dfsg-1
Distribution: unstable
Urgency: low
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
@@ -566,43 +567,45 @@ Changed-By: Charles Plessy <plessy at debian.org>
Description:
r-bioc-edger - Empirical analysis of digital gene expression data in R
Changes:
- r-bioc-edger (2.2.6-1) unstable; urgency=low
+ r-bioc-edger (2.4.0~dfsg-1) unstable; urgency=low
.
- [c9512e2] New upstream release.
- [40876f8] Compress binary package with xz.
+ [16d49d0] Bioconductor release 2.9.
+ [0e79ff9] Removed User's Guide (no source) in agreement with the
+ upstream authors, see “README.Debian”.
Checksums-Sha1:
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- c72d514bc4a1a090af85981d41fac96715ffed4b 2443 r-bioc-edger_2.2.6-1.diff.gz
- e89a6f92d6d0efc623c924c897adbdaee3dac7ea 2349128 r-bioc-edger_2.2.6-1_all.deb
+ e54591dba51c4f5be5569b2ad489200880f37d1c 1186 r-bioc-edger_2.4.0~dfsg-1.dsc
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Checksums-Sha256:
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- fdd7ca78c817e7d0d0e5d41ab2382bfb1021fb7a59bf4693d7b05d989e5685cd 2320529 r-bioc-edger_2.2.6.orig.tar.gz
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+ ad8f1cbeef39c3d03913855190a1b229bb4edc5f8ecdb4c21972f5eb7f9ccaae 2997 r-bioc-edger_2.4.0~dfsg-1.diff.gz
+ 7fd61329bf9e28d1bcefa5ad84b7cc8521f809bbade112ed524c51d23ccf740f 544866 r-bioc-edger_2.4.0~dfsg-1_all.deb
Files:
- 628f81628bb56a4f5340af6837a74107 1154 gnu-r optional r-bioc-edger_2.2.6-1.dsc
- 75de42f2f81018a70330bf129fcabfb0 2320529 gnu-r optional r-bioc-edger_2.2.6.orig.tar.gz
- fc190d545c8067c22341b7f7dd5f38d8 2443 gnu-r optional r-bioc-edger_2.2.6-1.diff.gz
- 781f3cf4683ecd1842dcc93dcae32752 2349128 gnu-r optional r-bioc-edger_2.2.6-1_all.deb
+ 87900dce9563004d6ea9c7b9b2de50c9 1186 gnu-r optional r-bioc-edger_2.4.0~dfsg-1.dsc
+ abf5fc133e11e5f84d9e406e71754e3d 401286 gnu-r optional r-bioc-edger_2.4.0~dfsg.orig.tar.gz
+ 5b3e4ed543ad5d478185953b602a9aab 2997 gnu-r optional r-bioc-edger_2.4.0~dfsg-1.diff.gz
+ 3402e7c58237bf5e7bae4da54521ccde 544866 gnu-r optional r-bioc-edger_2.4.0~dfsg-1_all.deb
┌──────────────────────────────────────────────────────────────────────────────┐
│ Package contents │
└──────────────────────────────────────────────────────────────────────────────┘
-r-bioc-edger_2.2.6-1_all.deb
-────────────────────────────
+r-bioc-edger_2.4.0~dfsg-1_all.deb
+─────────────────────────────────
new debian package, version 2.0.
- size 2349128 bytes: control archive= 2292 bytes.
- 778 bytes, 17 lines control
- 4553 bytes, 54 lines md5sums
+ size 544866 bytes: control archive= 1765 bytes.
+ 813 bytes, 18 lines control
+ 2831 bytes, 37 lines md5sums
Package: r-bioc-edger
- Version: 2.2.6-1
+ Version: 2.4.0~dfsg-1
Architecture: all
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
- Installed-Size: 3646
+ Installed-Size: 1542
+ Pre-Depends: dpkg (>= 1.15.6)
Depends: r-base-core (>= 2.14.0~), r-bioc-limma
Suggests: r-cran-mass
Section: gnu-r
@@ -616,76 +619,59 @@ r-bioc-edger_2.2.6-1_all.deb
distribution. It is also useful for differential signal analysis with
other types of genome-scale count data.
-drwxr-xr-x root/root 0 2011-10-19 15:32 ./
-drwxr-xr-x root/root 0 2011-10-19 15:32 ./usr/
-drwxr-xr-x root/root 0 2011-10-19 15:32 ./usr/lib/
-drwxr-xr-x root/root 0 2011-10-19 15:32 ./usr/lib/R/
-drwxr-xr-x root/root 0 2011-10-19 15:32 ./usr/lib/R/site-library/
-drwxr-xr-x root/root 0 2011-10-19 15:32 ./usr/lib/R/site-library/edgeR/
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--rw-r--r-- root/root 107181 2011-10-19 15:32 ./usr/lib/R/site-library/edgeR/R/edgeR.rdb
--rw-r--r-- root/root 384 2011-10-19 15:32 ./usr/lib/R/site-library/edgeR/R/edgeR
--rw-r--r-- root/root 1942 2011-10-19 15:32 ./usr/lib/R/site-library/edgeR/R/edgeR.rdx
-drwxr-xr-x root/root 0 2011-10-19 15:32 ./usr/lib/R/site-library/edgeR/help/
--rw-r--r-- root/root 2916 2011-10-19 15:32 ./usr/lib/R/site-library/edgeR/help/AnIndex
--rw-r--r-- root/root 177127 2011-10-19 15:32 ./usr/lib/R/site-library/edgeR/help/edgeR.rdb
--rw-r--r-- root/root 1089 2011-10-19 15:32 ./usr/lib/R/site-library/edgeR/help/aliases.rds
--rw-r--r-- root/root 674 2011-10-19 15:32 ./usr/lib/R/site-library/edgeR/help/paths.rds
--rw-r--r-- root/root 1523 2011-10-19 15:32 ./usr/lib/R/site-library/edgeR/help/edgeR.rdx
--rw-r--r-- root/root 1588 2011-10-19 15:32 ./usr/lib/R/site-library/edgeR/CITATION
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--rw-r--r-- root/root 248500 2011-10-19 15:32 ./usr/lib/R/site-library/edgeR/data/NC1.txt
--rw-r--r-- root/root 19 2011-10-19 15:32 ./usr/lib/R/site-library/edgeR/data/datalist
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--rw-r--r-- root/root 263571 2011-10-19 15:32 ./usr/lib/R/site-library/edgeR/data/Tu98.txt
--rw-r--r-- root/root 228426 2011-10-19 15:32 ./usr/lib/R/site-library/edgeR/data/NC2.txt
--rw-r--r-- root/root 698 2011-10-19 15:32 ./usr/lib/R/site-library/edgeR/NAMESPACE
-drwxr-xr-x root/root 0 2011-10-19 15:32 ./usr/lib/R/site-library/edgeR/html/
--rw-r--r-- root/root 18063 2011-10-19 15:32 ./usr/lib/R/site-library/edgeR/html/00Index.html
--rw-r--r-- root/root 1179 2011-10-19 15:32 ./usr/lib/R/site-library/edgeR/html/R.css
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--rw-r--r-- root/root 962 2011-10-19 15:32 ./usr/lib/R/site-library/edgeR/DESCRIPTION
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+-rwxr-xr-x root/root 2726 2011-11-18 13:52 ./usr/lib/R/site-library/edgeR/doc/edgeR.Rnw
+-rw-r--r-- root/root 67216 2011-11-18 13:52 ./usr/lib/R/site-library/edgeR/doc/edgeR.pdf
+drwxr-xr-x root/root 0 2011-11-18 13:53 ./usr/share/
+drwxr-xr-x root/root 0 2011-11-18 13:53 ./usr/share/doc/
+drwxr-xr-x root/root 0 2011-11-18 13:53 ./usr/share/doc/r-bioc-edger/
+-rw-r--r-- root/root 1536 2011-11-01 08:30 ./usr/share/doc/r-bioc-edger/NEWS.gz
+-rw-r--r-- root/root 717 2011-11-18 13:52 ./usr/share/doc/r-bioc-edger/README.test
+-rw-r--r-- root/root 1244 2011-11-18 13:52 ./usr/share/doc/r-bioc-edger/copyright
+drwxr-xr-x root/root 0 2011-11-18 13:53 ./usr/share/doc/r-bioc-edger/tests/
+-rw-r--r-- root/root 5448 2011-11-01 08:30 ./usr/share/doc/r-bioc-edger/tests/edgeR-Tests.Rout.save.gz
+-rw-r--r-- root/root 2456 2011-11-01 08:30 ./usr/share/doc/r-bioc-edger/tests/edgeR-Tests.R
+-rw-r--r-- root/root 494 2011-11-18 13:52 ./usr/share/doc/r-bioc-edger/changelog.Debian.gz
+-rw-r--r-- root/root 270 2011-11-18 13:52 ./usr/share/doc/r-bioc-edger/README.Debian
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -700,17 +686,6 @@ I: r-bioc-edger source: missing-debian-source-format
P: r-bioc-edger source: unversioned-copyright-format-uri http://dep.debian.net/deps/dep5/
P: r-bioc-edger: no-upstream-changelog
W: r-bioc-edger: copyright-without-copyright-notice
-W: r-bioc-edger: image-file-in-usr-lib usr/lib/R/site-library/edgeR/doc/Li_tgw-disp_vs_logconc.png
-W: r-bioc-edger: image-file-in-usr-lib usr/lib/R/site-library/edgeR/doc/edgeR_case_study_Li-017.png
-W: r-bioc-edger: image-file-in-usr-lib usr/lib/R/site-library/edgeR/doc/edgeR_case_study_Li-032.png
-W: r-bioc-edger: image-file-in-usr-lib usr/lib/R/site-library/edgeR/doc/edgeR_case_study_Li-meanvarplot.png
-W: r-bioc-edger: image-file-in-usr-lib usr/lib/R/site-library/edgeR/doc/edgeR_case_study_Zhang-015.png
-W: r-bioc-edger: image-file-in-usr-lib usr/lib/R/site-library/edgeR/doc/edgeR_case_study_Zhang-028.png
-W: r-bioc-edger: image-file-in-usr-lib usr/lib/R/site-library/edgeR/doc/edgeR_case_study_longSAGE-015.png
-W: r-bioc-edger: image-file-in-usr-lib usr/lib/R/site-library/edgeR/doc/edgeR_case_study_longSAGE-030.png
-W: r-bioc-edger: image-file-in-usr-lib usr/lib/R/site-library/edgeR/doc/edgeR_case_study_longSAGE-30.png
-W: r-bioc-edger: image-file-in-usr-lib usr/lib/R/site-library/edgeR/doc/edgeR_case_study_tHoen_tgw_disp_vs_logconc.png
-W: r-bioc-edger: image-file-in-usr-lib usr/lib/R/site-library/edgeR/doc/edgeR_normalization_example_marioni.png
W: r-bioc-edger: executable-not-elf-or-script usr/lib/R/site-library/edgeR/doc/edgeR.Rnw
I: Lintian run was successful.
@@ -742,8 +717,8 @@ The following packages will be REMOVED:
r-base-dev* r-bioc-limma* sbuild-build-depends-r-bioc-edger-dummy* tcl8.5*
tk8.5* ttf-dejavu-core* ucf* unzip* x11-common* xdg-utils* zip* zlib1g-dev*
0 upgraded, 0 newly installed, 76 to remove and 0 not upgraded.
-After this operation, 130 MB disk space will be freed.
-(Reading database ... 14801 files and directories currently installed.)
+After this operation, 129 MB disk space will be freed.
+(Reading database ... 14758 files and directories currently installed.)
Removing sbuild-build-depends-r-bioc-edger-dummy ...
Removing r-base-dev ...
Removing cdbs ...
@@ -874,18 +849,18 @@ Removing zlib1g-dev ...
└──────────────────────────────────────────────────────────────────────────────┘
Architecture: amd64
-Build-Space: 12312
-Build-Time: 9
+Build-Space: 4412
+Build-Time: 8
Distribution: unstable
-Install-Time: 84
-Job: r-bioc-edger_2.2.6-1.dsc
+Install-Time: 86
+Job: r-bioc-edger_2.4.0~dfsg-1.dsc
Lintian: pass
Package: r-bioc-edger
-Package-Time: 98
-Source-Version: 2.2.6-1
-Space: 12312
+Package-Time: 97
+Source-Version: 2.4.0~dfsg-1
+Space: 4412
Status: successful
-Version: 2.2.6-1
+Version: 2.4.0~dfsg-1
────────────────────────────────────────────────────────────────────────────────
-Finished at 20111019-1532
-Build needed 00:01:38, 12312k disc space
+Finished at 20111118-1353
+Build needed 00:01:37, 4412k disc space
diff --git a/dsc b/dsc
index e79b5aa..6f411f3 100644
--- a/dsc
+++ b/dsc
@@ -5,7 +5,7 @@ Format: 1.0
Source: r-bioc-edger
Binary: r-bioc-edger
Architecture: all
-Version: 2.2.6-1
+Version: 2.4.0~dfsg-1
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
Uploaders: Charles Plessy <plessy at debian.org>
Dm-Upload-Allowed: yes
@@ -17,29 +17,29 @@ Build-Depends: debhelper (>= 8), cdbs, r-base-dev (>= 2.10.0), r-bioc-limma
Package-List:
r-bioc-edger deb gnu-r optional
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+ 3f303b9663aea9f97f80eb24e8dcb54d4d54c186 401286 r-bioc-edger_2.4.0~dfsg.orig.tar.gz
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--
empirical analysis of digital gene expression data in R
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