[med-svn] r8622 - in trunk/packages: . bioimagexd/trunk bioimagexd/trunk/debian
Mathieu Malaterre
malat-guest at alioth.debian.org
Mon Nov 21 13:45:51 UTC 2011
Author: malat-guest
Date: 2011-11-21 13:45:49 +0000 (Mon, 21 Nov 2011)
New Revision: 8622
Added:
trunk/packages/bioimagexd/
trunk/packages/bioimagexd/trunk/debian/
Removed:
trunk/packages/bioimagexd/trunk/debian/
trunk/packages/bioimagexd/trunk/debian/README.source
trunk/packages/bioimagexd/trunk/debian/libjai-core-java-doc.javadoc
trunk/packages/bioimagexd/trunk/debian/libjai-core-java.install
trunk/packages/bioimagexd/trunk/debian/libjai-core-java.jlibs
trunk/packages/bioimagexd/trunk/debian/patches/
Modified:
trunk/packages/bioimagexd/trunk/debian/changelog
trunk/packages/bioimagexd/trunk/debian/control
trunk/packages/bioimagexd/trunk/debian/copyright
trunk/packages/bioimagexd/trunk/debian/get-orig-source
trunk/packages/bioimagexd/trunk/debian/rules
Log:
start bioimagexd
Deleted: trunk/packages/bioimagexd/trunk/debian/README.source
===================================================================
--- trunk/packages/jai-core/trunk/debian/README.source 2011-10-14 07:41:26 UTC (rev 8150)
+++ trunk/packages/bioimagexd/trunk/debian/README.source 2011-11-21 13:45:49 UTC (rev 8622)
@@ -1,8 +0,0 @@
-This package is also available under the JDL license. However this is
-clearly impossible to have it in debian. Package is thus released under
-JRL
-
-Since JRL clearly prohibit commercial use, this package is required to
-be located in non-free and not main
-
- -- Mathieu Malaterre <mathieu.malaterre at gmail.com> Mon, 12 Sep 2011 09:56:16 +0200
Modified: trunk/packages/bioimagexd/trunk/debian/changelog
===================================================================
--- trunk/packages/jai-core/trunk/debian/changelog 2011-10-14 07:41:26 UTC (rev 8150)
+++ trunk/packages/bioimagexd/trunk/debian/changelog 2011-11-21 13:45:49 UTC (rev 8622)
@@ -1,5 +1,5 @@
-jai-core (1.1.4-1) unstable; urgency=low
+bioimagexd (1.0-1) unstable; urgency=low
- * Initial Debian Upload (Closes: #641272)
+ * Initial Debian Upload (Closes: #)
-- Mathieu Malaterre <mathieu.malaterre at gmail.com> Mon, 12 Sep 2011 09:56:16 +0200
Modified: trunk/packages/bioimagexd/trunk/debian/control
===================================================================
--- trunk/packages/jai-core/trunk/debian/control 2011-10-14 07:41:26 UTC (rev 8150)
+++ trunk/packages/bioimagexd/trunk/debian/control 2011-11-21 13:45:49 UTC (rev 8622)
@@ -1,34 +1,28 @@
-Source: jai-core
-Priority: optional
-Section: non-free/java
+Source: bioimagexd
+Priority: extra
+Section: science
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
DM-Upload-Allowed: yes
Uploaders: Mathieu Malaterre <mathieu.malaterre at gmail.com>
-Build-Depends: debhelper (>= 8), javahelper (>=0.25)
-Build-Depends-Indep: default-jdk, default-jdk-doc, ant
+Build-Depends: debhelper (>= 8)
Standards-Version: 3.9.2
-Homepage: http://java.net/projects/jai-core/
-Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/jai-core/trunk/
-Vcs-Svn: svn://svn.debian.org/svn/debian-med/trunk/packages/jai-core/trunk/
+Homepage: http://www.bioimagexd.net/
+Vcs-Browser: http://anonscm.debian.org/viewvc/debian-med/trunk/packages/bioimagexd/trunk/
+Vcs-Svn: svn://svn.debian.org/debian-med/trunk/packages/bioimagexd/trunk/
-Package: libjai-core-java
-Architecture: i386 amd64
-Depends: ${java:Depends}, ${misc:Depends}, ${shlibs:Depends}
-Recommends: ${java:Recommends}
-Description: Java Advanced Imaging API reference implementation
- This project contains the source code for the core Java Advanced Imaging API
- reference implementation containing the packages javax.media.jai.* and
- com.sun.media.jai.*.
-
-Package: libjai-core-java-doc
-Section: non-free/doc
-Architecture: all
-Depends: ${java:Depends}, ${misc:Depends}
-Recommends: ${java:Recommends}
-Description: Java Advanced Imaging API reference implementation (documentation)
- This project contains the source code for the core Java Advanced Imaging API
- reference implementation containing the packages javax.media.jai.* and
- com.sun.media.jai.*.
- .
- This package provides the documentation for the library
+Package: bioimagexd
+Architecture: any
+Depends: ${misc:Depends}, ${shlibs:Depends}
+Description: Analyzing, processing and visualizing of multi dimensional microscopy images
+ BioImageXD is a multi-purpose post-processing tool for bioimaging. The
+ software can be used for simple visualization of multi-channel temporal image
+ stacks to complex 3D rendering of multiple channels at once. Animations of 3D
+ renderings can be created using flying paths or keyframes. BioImageXD has basic
+ image adjustment operations and a collection of noise reduction methods.
+ Processing methods are accompanied with a selection of segmentation methods.
+ Segmentation results can be analysed for tens of parameters or used for motion
+ tracking. Other quantitative analysis methods include for instance voxel and
+ object colocalization methods and internalization analysis. All processing and
+ analysis methods can be build into pipelines and run for hundreds of datasets
+ at once in batch processor.
Modified: trunk/packages/bioimagexd/trunk/debian/copyright
===================================================================
--- trunk/packages/jai-core/trunk/debian/copyright 2011-10-14 07:41:26 UTC (rev 8150)
+++ trunk/packages/bioimagexd/trunk/debian/copyright 2011-11-21 13:45:49 UTC (rev 8622)
@@ -1,352 +1,11 @@
Format: http://dep.debian.net/deps/dep5/
-Upstream-Name: Jai-core
-Source: http://java.net/projects/jai-core
+Upstream-Name: BioImageXD
+Source: http://www.bioimagexd.net/
Files: *
-Copyright: © 2005 Sun Microsystems, Inc. All rights reserved.
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Files: debian/*
Copyright: © 2011 Mathieu Malaterre <mathieu.malaterre at gmail.com>
-License: PD
- The packaging work is in the public domain unless stated otherwise.
+License:
Modified: trunk/packages/bioimagexd/trunk/debian/get-orig-source
===================================================================
--- trunk/packages/jai-core/trunk/debian/get-orig-source 2011-10-14 07:41:26 UTC (rev 8150)
+++ trunk/packages/bioimagexd/trunk/debian/get-orig-source 2011-11-21 13:45:49 UTC (rev 8622)
@@ -1,11 +1,7 @@
#!/bin/sh
set -ex
-# TODO:
-# when building the and dist, the tarball is actually called:
-# jai-1_1_4-pre-dr-b03-lib-linux-amd64-12_Sep_2011
-# while debian simply calls it 1.1.4
-PACKAGE=jai-core
+PACKAGE=bioimagexd
VERSION=${VERSION:-$2}
TARFILE=${TARFILE:-$3}
@@ -23,12 +19,7 @@
FOLDER=${PACKAGE}-${VERSION}
-# rev 111 is dated from:
-# Last Changed Date: 2007-08-31 18:25:50 +0200 (Fri, 31 Aug 2007)
-svn export -r 111 https://svn.java.net/svn/jai-core~svn/trunk ${FOLDER}
-# only keep the linux shared libs:
-rm -rf ${FOLDER}/src/share/mediaLib/windows
-rm -rf ${FOLDER}/src/share/mediaLib/solaris
+svn export -r 1732 https://bioimagexd.svn.sourceforge.net/svnroot/bioimagexd/bioimagexd/trunk ${FOLDER}
GZIP="--best --no-name" tar czf ${TARFILE} ${FOLDER}
rm -rf ${FOLDER}
Deleted: trunk/packages/bioimagexd/trunk/debian/libjai-core-java-doc.javadoc
===================================================================
--- trunk/packages/jai-core/trunk/debian/libjai-core-java-doc.javadoc 2011-10-14 07:41:26 UTC (rev 8150)
+++ trunk/packages/bioimagexd/trunk/debian/libjai-core-java-doc.javadoc 2011-11-21 13:45:49 UTC (rev 8622)
@@ -1 +0,0 @@
-build/linux-amd64/javadocs/docs-jcp usr/share/doc/libjai-core-java/api
Deleted: trunk/packages/bioimagexd/trunk/debian/libjai-core-java.install
===================================================================
--- trunk/packages/jai-core/trunk/debian/libjai-core-java.install 2011-10-14 07:41:26 UTC (rev 8150)
+++ trunk/packages/bioimagexd/trunk/debian/libjai-core-java.install 2011-11-21 13:45:49 UTC (rev 8622)
@@ -1 +0,0 @@
-build/linux-*/opt/lib/*/libmlib_jai.so usr/lib/jni
Deleted: trunk/packages/bioimagexd/trunk/debian/libjai-core-java.jlibs
===================================================================
--- trunk/packages/jai-core/trunk/debian/libjai-core-java.jlibs 2011-10-14 07:41:26 UTC (rev 8150)
+++ trunk/packages/bioimagexd/trunk/debian/libjai-core-java.jlibs 2011-11-21 13:45:49 UTC (rev 8622)
@@ -1 +0,0 @@
-build/linux-*/opt/lib/ext/*.jar
Modified: trunk/packages/bioimagexd/trunk/debian/rules
===================================================================
--- trunk/packages/jai-core/trunk/debian/rules 2011-10-14 07:41:26 UTC (rev 8150)
+++ trunk/packages/bioimagexd/trunk/debian/rules 2011-11-21 13:45:49 UTC (rev 8622)
@@ -1,12 +1,7 @@
#!/usr/bin/make -f
-JAVA_HOME=/usr/lib/jvm/default-java
-
%:
- dh $@ --with javahelper
+ dh $@
-override_dh_auto_build:
- ant -DBUILD_TYPE=fcs -f build.xml all
-
get-orig-source:
./debian/get-orig-source
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