[med-svn] r8691 - trunk/packages/qiime/branches/lucid/debian/patches

[Andreas Tille]

Author: tille
Date: 2011-11-29 08:13:31 +0000 (Tue, 29 Nov 2011)
New Revision: 8691

Added:
   trunk/packages/qiime/branches/lucid/debian/patches/fix_binary_helper_location.patch
Log:
Added patch which was obviosely forgotten to commit by Tim


Added: trunk/packages/qiime/branches/lucid/debian/patches/fix_binary_helper_location.patch
===================================================================
--- trunk/packages/qiime/branches/lucid/debian/patches/fix_binary_helper_location.patch	                        (rev 0)
+++ trunk/packages/qiime/branches/lucid/debian/patches/fix_binary_helper_location.patch	2011-11-29 08:13:31 UTC (rev 8691)
@@ -0,0 +1,18 @@
+--- a/qiime/denoiser/utils.py
++++ b/qiime/denoiser/utils.py
+@@ -41,9 +41,12 @@
+ def get_flowgram_ali_exe():
+     """Return the path to the flowgram alignment prog
+     """
+-    fp = get_qiime_project_dir() +\
+-        "/qiime/support_files/denoiser/bin/FlowgramAli_4frame"
+-    return fp
++    """fp = get_qiime_project_dir() +\
++    """    "/qiime/support_files/denoiser/bin/FlowgramAli_4frame"
++
++    """ Modified for Debian to allow this file to live somewhere more sensible:
++    """
++    return "/usr/lib/qiime/support_files/denoiser/bin/FlowgramAli_4frame"
+ 
+ def check_flowgram_ali_exe():
+    """Check if we have a working FlowgramAligner"""