[med-svn] r8702 - trunk/packages/python-pynast/trunk/debian

[Andreas Tille]

Author: tille
Date: 2011-11-29 11:04:33 +0000 (Tue, 29 Nov 2011)
New Revision: 8702

Added:
   trunk/packages/python-pynast/trunk/debian/doc-base
Modified:
   trunk/packages/python-pynast/trunk/debian/changelog
   trunk/packages/python-pynast/trunk/debian/control
   trunk/packages/python-pynast/trunk/debian/links
   trunk/packages/python-pynast/trunk/debian/pynast.1
Log:
Added doc-base file; finally the rename of the binary package was documented - reverted my change in debian/control


Modified: trunk/packages/python-pynast/trunk/debian/changelog
===================================================================
--- trunk/packages/python-pynast/trunk/debian/changelog	2011-11-29 11:03:12 UTC (rev 8701)
+++ trunk/packages/python-pynast/trunk/debian/changelog	2011-11-29 11:04:33 UTC (rev 8702)
@@ -17,6 +17,8 @@
   * Dephelper 8 (control+compat)
   * debian/links: Link packages JavaScript libraries
   * debian/rules: remove incomplete links to JavaScript libraries
+  * debian/doc-base: created docbase file
+  * debian/pynast.1: escape hyphen character
 
  -- Andreas Tille <tille at debian.org>  Tue, 29 Nov 2011 11:22:19 +0100
 

Modified: trunk/packages/python-pynast/trunk/debian/control
===================================================================
--- trunk/packages/python-pynast/trunk/debian/control	2011-11-29 11:03:12 UTC (rev 8701)
+++ trunk/packages/python-pynast/trunk/debian/control	2011-11-29 11:04:33 UTC (rev 8702)
@@ -13,7 +13,7 @@
 Vcs-Svn: svn://svn.debian.org/debian-med/trunk/packages/python-nast/trunk/
 X-Python-Version: >= 2.5
 
-Package: python-pynast
+Package: pynast
 Architecture: all
 Depends: ${misc:Depends}, ${python:Depends}, libjs-jquery, libjs-underscore
 Description: alignment of short DNA sequences
@@ -39,4 +39,3 @@
  alignment. J. Gregory Caporaso, Kyle Bittinger, Frederic D. Bushman,
  Todd Z. DeSantis, Gary L. Andersen, and Rob Knight. January 15, 2010,
  DOI 10.1093/bioinformatics/btp636. Bioinformatics 26: 266-267.
-

Added: trunk/packages/python-pynast/trunk/debian/doc-base
===================================================================
--- trunk/packages/python-pynast/trunk/debian/doc-base	                        (rev 0)
+++ trunk/packages/python-pynast/trunk/debian/doc-base	2011-11-29 11:04:33 UTC (rev 8702)
@@ -0,0 +1,17 @@
+Document: python-pynast
+Title:  Python Nearest Alignment Space Termination tool
+Author: The PyNAST Project
+Abstract: alignment of short DNA sequences
+ Given a set of sequences and a template alignment, PyNAST will align the
+ input sequences against the template alignment, and return a multiple
+ sequence alignment which contains the same number of positions (or
+ columns) as the template alignment. This facilitates the analysis of new
+ sequences in the context of existing alignments, and additional data
+ derived from existing alignments such as phylogenetic trees. Because
+ any protein or nucleic acid sequences and template alignments can be
+ provided, PyNAST is not limited to the analysis of 16s rDNA sequences.
+Section: Science/Biology
+
+Format: html
+Files: /usr/share/doc/pynast/html/*
+Index: /usr/share/doc/pynast/html/index.html

Modified: trunk/packages/python-pynast/trunk/debian/links
===================================================================
--- trunk/packages/python-pynast/trunk/debian/links	2011-11-29 11:03:12 UTC (rev 8701)
+++ trunk/packages/python-pynast/trunk/debian/links	2011-11-29 11:04:33 UTC (rev 8702)
@@ -1,2 +1,2 @@
-usr/share/javascript/jquery/jquery.js		usr/share/doc/python-pynast/html/_static/jquery.js
-usr/share/javascript/underscore/underscore.js	usr/share/doc/python-pynast/html/_static/underscore.js
+usr/share/javascript/jquery/jquery.js		usr/share/doc/pynast/html/_static/jquery.js
+usr/share/javascript/underscore/underscore.js	usr/share/doc/pynast/html/_static/underscore.js

Modified: trunk/packages/python-pynast/trunk/debian/pynast.1
===================================================================
--- trunk/packages/python-pynast/trunk/debian/pynast.1	2011-11-29 11:03:12 UTC (rev 8701)
+++ trunk/packages/python-pynast/trunk/debian/pynast.1	2011-11-29 11:04:33 UTC (rev 8702)
@@ -1,10 +1,9 @@
-.\" DO NOT MODIFY THIS FILE!  It was generated by help2man 1.40.4. .. and only minimally edited
 .TH VERSION: "1" "August 2011" "Version: pynast 1.1" "User Commands"
 .SH NAME
 PyNAST \- alignment of short DNA sequences
 .SH SYNOPSIS
 .B pynast
-[\fIoptions\fR] \fI{-i input_fp -t template_fp}\fR
+[\fIoptions\fR] \fI{\-i input_fp \-t template_fp}\fR
 .SH DESCRIPTION
 [] indicates optional input (order unimportant)
 {} indicates required input (order unimportant)