[med-svn] r8712 - trunk/packages/boxshade/trunk/debian

[Charles Plessy]

Author: plessy
Date: 2011-11-30 05:16:54 +0000 (Wed, 30 Nov 2011)
New Revision: 8712

Modified:
   trunk/packages/boxshade/trunk/debian/boxshade.1.xml
   trunk/packages/boxshade/trunk/debian/changelog
Log:
Corrected spelling in debian/boxshade.1.xml.  Closes: #650473, thanks to A. Costa.


Modified: trunk/packages/boxshade/trunk/debian/boxshade.1.xml
===================================================================
--- trunk/packages/boxshade/trunk/debian/boxshade.1.xml	2011-11-30 04:19:23 UTC (rev 8711)
+++ trunk/packages/boxshade/trunk/debian/boxshade.1.xml	2011-11-30 05:16:54 UTC (rev 8712)
@@ -190,7 +190,7 @@
 <refsect2>
   <title>Output devices</title>
 <para>POSTSCRIPT/EPS creates POSTSCRIPT(TM) files for printing on
-a Laserprinter or for further conversion with a POSTCRIPT interpreter
+a Laserprinter or for further conversion with a POSTSCRIPT interpreter
 (like GHOSTSCRIPT) + HPGL for export to various graphics programs or
 for conversion/printing with the shareware program PRINTGL. Plotting
 BOXSHADE output on a plotter is generally not recommended + RTF for
@@ -247,7 +247,7 @@
 one choice of colors for the output. I therefore added a management of
 default parameters allowing two levels of assistance to the user. 1) all
 default parameters are contained in an ASCII file that can be modified
-easily to accomodate the users taste. The format is roughly documented
+easily to accommodate the users taste. The format is roughly documented
 within the file-header, it resembles the keyboard input one has to make
 if using the program interactively. There are two such files supplied
 with this release of BOXSHADE, BOX_DNA.PAR and BOX_PEP.PAR , holding
@@ -256,7 +256,7 @@
 DNA-comparisons one doesn't care of "similar" residues. 2) to run the
 program with minimal user interaction, I have added the possibility to
 use command line parameters. At the moment, you can use: /check : list
-all allowed command line paramters (this list) and allows parameters to
+all allowed command line parameters (this list) and allows parameters to
 be added. /def : program runs without questions, BOX_PEP.PAR is used as
 default /dna : makes the program use BOX_DNA.PAR as parameter file /pep :
 makes the program use BOX_PEP.PAR as parameter file /in=xxx : makes the
@@ -276,7 +276,7 @@
 the native style of the machine is used.
     </para>
 <note><title>ATTENTION</title>
-<para>on unix systems, the dash (-) instead of the slash (/) has to be used as separation character for command line paramters. For example, a valid unix command line is: <command>boxshade -def -numdef -cons -symbcons=" .*"</command>
+<para>on unix systems, the dash (-) instead of the slash (/) has to be used as separation character for command line parameters. For example, a valid unix command line is: <command>boxshade -def -numdef -cons -symbcons=" .*"</command>
 </para></note>
 </refsect2>
 
@@ -324,7 +324,7 @@
 of the alignment and consecutively that sequence is taken to be the
 'consensus'. Only those residues become shaded that are identical or
 similar to the chosen sequence. Output obtained with this option tends
-to be less shaded and neglects similarities beween the other (non-chosen)
+to be less shaded and neglects similarities between the other (non-chosen)
 sequences. Starting in V2.7, this 'master sequence' can be hidden. Thus,
 it only influences the shading of the other sequences without being
 shown itself.
@@ -338,7 +338,7 @@
 symbol. This line can either be obtained by using the command line
 qualifier /CONS or interactively by answering the question ' create
 consensus? '. The way this consensus line is displayed can be modified
-by the command line parameter SYMBCONS=xyz, by editing the respecitve
+by the command line parameter SYMBCONS=xyz, by editing the respective
 entry in the .PAR file or interactively. Since the SYMBCONS syntax is
 not intuitive, here a brief description: The SYMBCONS parameter consist
 of exactly three symbols: + the first one stands for 'normal' sequence
@@ -347,14 +347,14 @@
 of the alignment. See the files BOX_PEP.SIM and BOX_DNA.SIM to see
 what residues are considered similar. + the third symbol represents
 positions that are identical in all sequences of the alignment. A
-SYMBCONS parameter string " .*" (blank/point/asterisc) means: label
+SYMBCONS parameter string " .*" (blank/point/asterisk) means: label
 all positions in the alignment with totally identical residues by an
-asterisc, all positions with all similar residues by a point and do not
+asterisk, all positions with all similar residues by a point and do not
 mark the other positions. The letter 'B' can be used instead of the blank,
 this is necessary e.g. when using the command line option /SYMBCONS=B.*
 which gives the same result as the above example. The option /SYMBCONS=
 .* would result in an unexpected behaviour because MSDOS squeezes blanks
-out of the command line. Besides points, asteriscs and other symbols,
+out of the command line. Besides points, asterisks and other symbols,
 there are two special characters when they appear in the SYMBCONS string:
 'L' and 'U'. An 'L' means, that a lowercase representation of the
 most abundant residue at that position is to be used instead of a fixed

Modified: trunk/packages/boxshade/trunk/debian/changelog
===================================================================
--- trunk/packages/boxshade/trunk/debian/changelog	2011-11-30 04:19:23 UTC (rev 8711)
+++ trunk/packages/boxshade/trunk/debian/changelog	2011-11-30 05:16:54 UTC (rev 8712)
@@ -1,3 +1,10 @@
+boxshade (3.3.1-6) UNRELEASED; urgency=low
+
+  [ A. Costa ]
+  * Corrected spelling in debian/boxshade.1.xml.  Closes: #650473.
+
+ -- Charles Plessy <plessy at debian.org>  Wed, 30 Nov 2011 14:14:43 +0900
+
 boxshade (3.3.1-5) unstable; urgency=low
 
   [ David Paleino ]