[med-svn] r8081 - in trunk/packages/cain/trunk/debian: . lintian

[Ivo Maintz]

Author: ivomaintz-guest
Date: 2011-10-05 11:04:47 +0000 (Wed, 05 Oct 2011)
New Revision: 8081

Added:
   trunk/packages/cain/trunk/debian/cain-common.manpages
   trunk/packages/cain/trunk/debian/lintian/
   trunk/packages/cain/trunk/debian/lintian/python-cain
Removed:
   trunk/packages/cain/trunk/debian/python-cain.manpages
Modified:
   trunk/packages/cain/trunk/debian/control
   trunk/packages/cain/trunk/debian/python-cain.install
Log:
fixed some lintian-related errors and warnings



Copied: trunk/packages/cain/trunk/debian/cain-common.manpages (from rev 8079, trunk/packages/cain/trunk/debian/python-cain.manpages)
===================================================================
--- trunk/packages/cain/trunk/debian/cain-common.manpages	                        (rev 0)
+++ trunk/packages/cain/trunk/debian/cain-common.manpages	2011-10-05 11:04:47 UTC (rev 8081)
@@ -0,0 +1 @@
+debian/*1

Modified: trunk/packages/cain/trunk/debian/control
===================================================================
--- trunk/packages/cain/trunk/debian/control	2011-10-05 09:01:52 UTC (rev 8080)
+++ trunk/packages/cain/trunk/debian/control	2011-10-05 11:04:47 UTC (rev 8081)
@@ -26,20 +26,22 @@
 Description: simulations of chemical reactions
  Cain performs stochastic and deterministic simulations of chemical reactions.
  It can spawn multiple simulation processes to utilize multi-core computers.
- It stores models, methods, and simulation output (populations and reaction counts)
- in an XML format. In addition, SBML models can be imported and exported. The
- models and methods can be read from input files or edited within the program.
+ It stores models, methods, and simulation output (populations and reaction
+ counts) in an XML format. In addition, SBML models can be imported and
+ exported. The models and methods can be read from input files or edited
+ within the program.
  .
  The GUI (Graphical User Interface) is written in Python and uses the wxPython
- toolkit. Most of the solvers are implemented as command line executables, written
- in C++, which are driven by Cain. This makes it easy to launch batch jobs. It also
- simplifies the process of adding new solvers. Cain offers a variety of solvers:
- *	Gillespie's direct method.
- *	Gillespie's first reaction method.
- *	Gibson and Bruck's next reaction method.
- *	Tau-leaping.
- *	Hybrid direct/tau-leaping.
- *	ODE integration.
+ toolkit. Most of the solvers are implemented as command line executables,
+ written in C++, which are driven by Cain. This makes it easy to launch batch
+ jobs. It also simplifies the process of adding new solvers. Cain offers a
+ variety of solvers:
+  * Gillespie's direct method.
+  * Gillespie's first reaction method.
+  * Gibson and Bruck's next reaction method.
+  * Tau-leaping.
+  * Hybrid direct/tau-leaping.
+  * ODE integration.
  .
  This package provides the python modules of cain
 
@@ -53,19 +55,21 @@
 Description: simulations of chemical reactions
  Cain performs stochastic and deterministic simulations of chemical reactions.
  It can spawn multiple simulation processes to utilize multi-core computers.
- It stores models, methods, and simulation output (populations and reaction counts)
- in an XML format. In addition, SBML models can be imported and exported. The
- models and methods can be read from input files or edited within the program.
+ It stores models, methods, and simulation output (populations and reaction
+ counts) in an XML format. In addition, SBML models can be imported and
+ exported. The models and methods can be read from input files or edited
+ within the program.
  .
  The GUI (Graphical User Interface) is written in Python and uses the wxPython
- toolkit. Most of the solvers are implemented as command line executables, written
- in C++, which are driven by Cain. This makes it easy to launch batch jobs. It also
- simplifies the process of adding new solvers. Cain offers a variety of solvers:
- *	Gillespie's direct method.
- *	Gillespie's first reaction method.
- *	Gibson and Bruck's next reaction method.
- *	Tau-leaping.
- *	Hybrid direct/tau-leaping.
- *	ODE integration.
+ toolkit. Most of the solvers are implemented as command line executables,
+ written in C++, which are driven by Cain. This makes it easy to launch batch
+ jobs. It also simplifies the process of adding new solvers. Cain offers a
+ variety of solvers:
+  * Gillespie's direct method.
+  * Gillespie's first reaction method.
+  * Gibson and Bruck's next reaction method.
+  * Tau-leaping.
+  * Hybrid direct/tau-leaping.
+  * ODE integration.
  .
  This package provides the basic cain files and solvers

Added: trunk/packages/cain/trunk/debian/lintian/python-cain
===================================================================
--- trunk/packages/cain/trunk/debian/lintian/python-cain	                        (rev 0)
+++ trunk/packages/cain/trunk/debian/lintian/python-cain	2011-10-05 11:04:47 UTC (rev 8081)
@@ -0,0 +1 @@
+python-cain: wrong-section-according-to-package-name

Modified: trunk/packages/cain/trunk/debian/python-cain.install
===================================================================
--- trunk/packages/cain/trunk/debian/python-cain.install	2011-10-05 09:01:52 UTC (rev 8080)
+++ trunk/packages/cain/trunk/debian/python-cain.install	2011-10-05 11:04:47 UTC (rev 8081)
@@ -3,3 +3,4 @@
 usr/share/cain/simulation
 usr/share/cain/state
 usr/share/cain/*.py
+../lintian/python-cain usr/share/lintian/overrides

Deleted: trunk/packages/cain/trunk/debian/python-cain.manpages
===================================================================
--- trunk/packages/cain/trunk/debian/python-cain.manpages	2011-10-05 09:01:52 UTC (rev 8080)
+++ trunk/packages/cain/trunk/debian/python-cain.manpages	2011-10-05 11:04:47 UTC (rev 8081)
@@ -1 +0,0 @@
-debian/*1