[med-svn] [SCM] r-bioc-edger branch, meta, updated. 2f1f35b865c26e775b2321b00fb730e57bcf462c
Charles Plessy
plessy at debian.org
Thu Oct 20 01:22:57 UTC 2011
The following commit has been merged in the meta branch:
commit 2f1f35b865c26e775b2321b00fb730e57bcf462c
Author: Charles Plessy <plessy at debian.org>
Date: Thu Oct 20 10:19:53 2011 +0900
Uploaded r-bioc-edger_2.2.6-1_amd64.changes.
diff --git a/amd64.changes b/amd64.changes
index dd479d8..7924dab 100644
--- a/amd64.changes
+++ b/amd64.changes
@@ -2,52 +2,52 @@
Hash: SHA256
Format: 1.8
-Date: Fri, 03 Jun 2011 15:22:29 +0900
+Date: Wed, 19 Oct 2011 15:29:52 +0900
Source: r-bioc-edger
Binary: r-bioc-edger
Architecture: source all
-Version: 2.2.5-1
+Version: 2.2.6-1
Distribution: unstable
Urgency: low
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
Changed-By: Charles Plessy <plessy at debian.org>
Description:
r-bioc-edger - Empirical analysis of digital gene expression data in R
-Closes: 628882
Changes:
- r-bioc-edger (2.2.5-1) unstable; urgency=low
+ r-bioc-edger (2.2.6-1) unstable; urgency=low
.
- * Initial release (Closes: #628882)
+ [c9512e2] New upstream release.
+ [40876f8] Compress binary package with xz.
Checksums-Sha1:
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- 49df47e5a37764858364ca79025ecdbe3456d7d1 2320471 r-bioc-edger_2.2.5.orig.tar.gz
- 4eadf4ec5f185a2e88fe63fa57aa8df327625842 2388 r-bioc-edger_2.2.5-1.diff.gz
- 8b5d03a6991b6109f6ba6780363b0fc51d5ab311 2520492 r-bioc-edger_2.2.5-1_all.deb
+ 9ce94601c175d78bbfe15d334208a1a923245f8d 2040 r-bioc-edger_2.2.6-1.dsc
+ 7066d9eb7c7e2a20e160639b661c2571e5d63710 2320529 r-bioc-edger_2.2.6.orig.tar.gz
+ c72d514bc4a1a090af85981d41fac96715ffed4b 2443 r-bioc-edger_2.2.6-1.diff.gz
+ e89a6f92d6d0efc623c924c897adbdaee3dac7ea 2349128 r-bioc-edger_2.2.6-1_all.deb
Checksums-Sha256:
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- ad40ac6d75dc1234772bef48ee99cdddb2155998f3a1235885c5df9fc034442e 2388 r-bioc-edger_2.2.5-1.diff.gz
- 529fb0510c121ff87c3360d0e25b9a9c323fae0dbb818cff12e192abcddeacce 2520492 r-bioc-edger_2.2.5-1_all.deb
+ 6f0b2899bde8a3d6c920d07695792d9e12af56b26f734606d5d11477add2e4ff 2040 r-bioc-edger_2.2.6-1.dsc
+ fdd7ca78c817e7d0d0e5d41ab2382bfb1021fb7a59bf4693d7b05d989e5685cd 2320529 r-bioc-edger_2.2.6.orig.tar.gz
+ 19956af815df84626848da3420d372db67b282c95c8f3b4f1381f634e46f327d 2443 r-bioc-edger_2.2.6-1.diff.gz
+ 92f76af94c1a46f3fd2b30221de05e9e59bdd5d615ffe973285f3fb62464d2fe 2349128 r-bioc-edger_2.2.6-1_all.deb
Files:
- f97bde530ee045975d7746042b99b57f 1992 gnu-r optional r-bioc-edger_2.2.5-1.dsc
- 92968a8ada4c28db39a953a610ca42e7 2320471 gnu-r optional r-bioc-edger_2.2.5.orig.tar.gz
- 659a9927bcdb0a66ea1423a15db7b228 2388 gnu-r optional r-bioc-edger_2.2.5-1.diff.gz
- 7d600cd4181bbd2cbaba8ead538fbc57 2520492 gnu-r optional r-bioc-edger_2.2.5-1_all.deb
+ 39c59674e275415402409b007a4931a4 2040 gnu-r optional r-bioc-edger_2.2.6-1.dsc
+ 75de42f2f81018a70330bf129fcabfb0 2320529 gnu-r optional r-bioc-edger_2.2.6.orig.tar.gz
+ fc190d545c8067c22341b7f7dd5f38d8 2443 gnu-r optional r-bioc-edger_2.2.6-1.diff.gz
+ 781f3cf4683ecd1842dcc93dcae32752 2349128 gnu-r optional r-bioc-edger_2.2.6-1_all.deb
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diff --git a/amd64.log b/amd64.log
index b61b56d..6080624 100644
--- a/amd64.log
+++ b/amd64.log
@@ -1,17 +1,18 @@
-sbuild (Debian sbuild) 0.62.2 (05 Apr 2011) on anx191
+sbuild (Debian sbuild) 0.62.5 (13 Jul 2011) on anx191
╔══════════════════════════════════════════════════════════════════════════════╗
-║ r-bioc-edger 2.2.5-1 (amd64) 03 Jun 2011 15:23 ║
+║ r-bioc-edger 2.2.6-1 (amd64) 19 Oct 2011 15:30 ║
╚══════════════════════════════════════════════════════════════════════════════╝
Package: r-bioc-edger
-Version: 2.2.5-1
-Source Version: 2.2.5-1
+Version: 2.2.6-1
+Source Version: 2.2.6-1
Distribution: unstable
Architecture: amd64
-I: NOTICE: Log filtering will replace 'build/r-bioc-edger-Mh33dU' with '«BUILDDIR»'
-I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/sid-amd64-sbuild-0d45f6ca-ca12-4f9d-b015-bbeeb06b0641' with '«CHROOT»'
+I: NOTICE: Log filtering will replace 'build/r-bioc-edger-CMzSoB/r-bioc-edger-2.2.6' with '«PKGBUILDDIR»'
+I: NOTICE: Log filtering will replace 'build/r-bioc-edger-CMzSoB' with '«BUILDDIR»'
+I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/sid-amd64-sbuild-c13d5073-76d7-47d3-a86c-588c45b34881' with '«CHROOT»'
┌──────────────────────────────────────────────────────────────────────────────┐
│ Update chroot │
@@ -34,14 +35,14 @@ Reading state information...
Local sources
─────────────
-r-bioc-edger_2.2.5-1.dsc exists in .; copying to chroot
+r-bioc-edger_2.2.6-1.dsc exists in .; copying to chroot
Check arch
──────────
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
-dpkg-deb: building package `sbuild-build-depends-core-dummy' in `/«BUILDDIR»/resolver-cyLFgg/apt_archive/sbuild-build-depends-core-dummy.deb'.
+dpkg-deb: building package `sbuild-build-depends-core-dummy' in `/«BUILDDIR»/resolver-xdS4Ue/apt_archive/sbuild-build-depends-core-dummy.deb'.
OK
Reading package lists...
@@ -53,19 +54,11 @@ Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
-The following NEW packages will be installed:
- sbuild-build-depends-core-dummy
-debconf: delaying package configuration, since apt-utils is not installed
-0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded.
-Need to get 0 B/702 B of archives.
-After this operation, 0 B of additional disk space will be used.
-Selecting previously deselected package sbuild-build-depends-core-dummy.
-(Reading database ... 10799 files and directories currently installed.)
-Unpacking sbuild-build-depends-core-dummy (from .../sbuild-build-depends-core-dummy.deb) ...
-Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
+sbuild-build-depends-core-dummy is already the newest version.
+0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
Merged Build-Depends: base-files, base-passwd, bash, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, ncurses-base, ncurses-bin, perl-base, sed, login, sysvinit-utils, sysvinit, tar, bsdutils, mount, util-linux, libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 8), cdbs, r-base-dev (>= 2.10.0), r-bioc-limma
Filtered Build-Depends: base-files, base-passwd, bash, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, ncurses-base, ncurses-bin, perl-base, sed, login, sysvinit-utils, sysvinit, tar, bsdutils, mount, util-linux, libc6-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 8), cdbs, r-base-dev (>= 2.10.0), r-bioc-limma
-dpkg-deb: building package `sbuild-build-depends-r-bioc-edger-dummy' in `/«BUILDDIR»/resolver-LHBVUN/apt_archive/sbuild-build-depends-r-bioc-edger-dummy.deb'.
+dpkg-deb: building package `sbuild-build-depends-r-bioc-edger-dummy' in `/«BUILDDIR»/resolver-w8_iEa/apt_archive/sbuild-build-depends-r-bioc-edger-dummy.deb'.
OK
Reading package lists...
@@ -78,307 +71,301 @@ Reading package lists...
Building dependency tree...
Reading state information...
The following extra packages will be installed:
- bsdmainutils cdbs debhelper dpatch file fontconfig fontconfig-config gettext
- gettext-base gfortran gfortran-4.6 groff-base html2text intltool-debian
- libblas-dev libblas3gf libbz2-dev libcairo2 libcroco3 libdatrie1 libexpat1
- libfontconfig1 libfreetype6 libgfortran3 libglib2.0-0 libice6 libjpeg62
- libjpeg62-dev liblapack-dev liblapack3gf libmagic1 libncurses5-dev
+ cdbs debhelper dpatch file fontconfig fontconfig-config gettext gettext-base
+ gfortran gfortran-4.6 groff-base html2text intltool-debian libblas-dev
+ libblas3gf libbz2-dev libcairo2 libcroco3 libdatrie1 libexpat1
+ libfontconfig1 libfreetype6 libgfortran3 libglib2.0-0 libice6 libjpeg8
+ libjpeg8-dev liblapack-dev liblapack3gf libmagic1 libncurses5-dev
libpango1.0-0 libpaper-utils libpaper1 libpcre3 libpcre3-dev libpcrecpp0
- libpipeline1 libpixman-1-0 libpng12-0 libpng12-dev libreadline-dev
- libreadline6-dev libsm6 libthai-data libthai0 libtiff4 libunistring0
- libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6
- libxext6 libxft2 libxml2 libxrender1 libxss1 libxt6 man-db po-debconf
- r-base-core r-base-dev r-bioc-limma tcl8.5 tk8.5 ttf-dejavu-core ucf unzip
- x11-common xdg-utils zip zlib1g-dev
+ libpipeline1 libpixman-1-0 libpng12-dev libreadline-dev libreadline6-dev
+ libsm6 libthai-data libthai0 libtiff4 libtinfo-dev libunistring0 libx11-6
+ libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6
+ libxft2 libxml2 libxrender1 libxss1 libxt6 man-db po-debconf r-base-core
+ r-base-dev r-bioc-limma tcl8.5 tk8.5 ttf-dejavu-core ucf unzip x11-common
+ xdg-utils zip zlib1g-dev
Suggested packages:
- wamerican wordlist whois vacation devscripts dh-make curl defoma gettext-doc
- gfortran-multilib gfortran-doc gfortran-4.6-multilib gfortran-4.6-doc
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- libmail-box-perl r-doc-info r-doc-pdf r-mathlib r-base-html tclreadline
- gvfs-bin
+ devscripts dh-make curl defoma gettext-doc gfortran-multilib gfortran-doc
+ gfortran-4.6-multilib gfortran-4.6-doc libgfortran3-dbg groff ncurses-doc
+ ttf-baekmuk ttf-arphic-gbsn00lp ttf-arphic-bsmi00lp ttf-arphic-gkai00mp
+ ttf-arphic-bkai00mp less www-browser libmail-box-perl r-doc-info r-doc-pdf
+ r-mathlib r-base-html tclreadline gvfs-bin
Recommended packages:
autotools-dev patchutils autopoint libglib2.0-data shared-mime-info
x-ttcidfont-conf xml-core libmail-sendmail-perl r-recommended r-doc-html
xterm x-terminal-emulator libfile-mimeinfo-perl x11-utils x11-xserver-utils
The following NEW packages will be installed:
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- gettext-base gfortran gfortran-4.6 groff-base html2text intltool-debian
- libblas-dev libblas3gf libbz2-dev libcairo2 libcroco3 libdatrie1 libexpat1
- libfontconfig1 libfreetype6 libgfortran3 libglib2.0-0 libice6 libjpeg62
- libjpeg62-dev liblapack-dev liblapack3gf libmagic1 libncurses5-dev
+ cdbs debhelper dpatch file fontconfig fontconfig-config gettext gettext-base
+ gfortran gfortran-4.6 groff-base html2text intltool-debian libblas-dev
+ libblas3gf libbz2-dev libcairo2 libcroco3 libdatrie1 libexpat1
+ libfontconfig1 libfreetype6 libgfortran3 libglib2.0-0 libice6 libjpeg8
+ libjpeg8-dev liblapack-dev liblapack3gf libmagic1 libncurses5-dev
libpango1.0-0 libpaper-utils libpaper1 libpcre3 libpcre3-dev libpcrecpp0
- libpipeline1 libpixman-1-0 libpng12-0 libpng12-dev libreadline-dev
- libreadline6-dev libsm6 libthai-data libthai0 libtiff4 libunistring0
- libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6
- libxext6 libxft2 libxml2 libxrender1 libxss1 libxt6 man-db po-debconf
- r-base-core r-base-dev r-bioc-limma sbuild-build-depends-r-bioc-edger-dummy
- tcl8.5 tk8.5 ttf-dejavu-core ucf unzip x11-common xdg-utils zip zlib1g-dev
+ libpipeline1 libpixman-1-0 libpng12-dev libreadline-dev libreadline6-dev
+ libsm6 libthai-data libthai0 libtiff4 libtinfo-dev libunistring0 libx11-6
+ libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6
+ libxft2 libxml2 libxrender1 libxss1 libxt6 man-db po-debconf r-base-core
+ r-base-dev r-bioc-limma sbuild-build-depends-r-bioc-edger-dummy tcl8.5 tk8.5
+ ttf-dejavu-core ucf unzip x11-common xdg-utils zip zlib1g-dev
debconf: delaying package configuration, since apt-utils is not installed
-0 upgraded, 77 newly installed, 0 to remove and 0 not upgraded.
-Need to get 0 B/54.5 MB of archives.
-After this operation, 131 MB of additional disk space will be used.
-Selecting previously deselected package bsdmainutils.
-(Reading database ... 10799 files and directories currently installed.)
-Unpacking bsdmainutils (from .../bsdmainutils_8.2.2_amd64.deb) ...
-Selecting previously deselected package groff-base.
-Unpacking groff-base (from .../groff-base_1.21-5_amd64.deb) ...
-Selecting previously deselected package libpipeline1.
-Unpacking libpipeline1 (from .../libpipeline1_1.2.0-2_amd64.deb) ...
-Selecting previously deselected package man-db.
-Unpacking man-db (from .../man-db_2.6.0.2-1_amd64.deb) ...
-Selecting previously deselected package libmagic1.
-Unpacking libmagic1 (from .../libmagic1_5.04-5+b1_amd64.deb) ...
-Selecting previously deselected package file.
-Unpacking file (from .../file_5.04-5+b1_amd64.deb) ...
-Selecting previously deselected package gettext-base.
-Unpacking gettext-base (from .../gettext-base_0.18.1.1-3_amd64.deb) ...
-Selecting previously deselected package libpcre3.
-Unpacking libpcre3 (from .../libpcre3_8.12-3_amd64.deb) ...
-Selecting previously deselected package libxml2.
-Unpacking libxml2 (from .../libxml2_2.7.8.dfsg-2+b1_amd64.deb) ...
-Selecting previously deselected package ucf.
+0 upgraded, 76 newly installed, 0 to remove and 0 not upgraded.
+Need to get 0 B/58.2 MB of archives.
+After this operation, 130 MB of additional disk space will be used.
+Selecting previously unselected package libpipeline1.
+(Reading database ... 10877 files and directories currently installed.)
+Unpacking libpipeline1 (from .../libpipeline1_1.2.0-3_amd64.deb) ...
+Selecting previously unselected package libpcre3.
+Unpacking libpcre3 (from .../libpcre3_8.12-4_amd64.deb) ...
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+Selecting previously unselected package ucf.
Unpacking ucf (from .../ucf_3.0025+nmu2_all.deb) ...
Moving old data out of the way
-Selecting previously deselected package html2text.
+Selecting previously unselected package ttf-dejavu-core.
+Unpacking ttf-dejavu-core (from .../ttf-dejavu-core_2.33-2_all.deb) ...
+Selecting previously unselected package fontconfig-config.
+Unpacking fontconfig-config (from .../fontconfig-config_2.8.0-3_all.deb) ...
+Selecting previously unselected package libfontconfig1.
+Unpacking libfontconfig1 (from .../libfontconfig1_2.8.0-3_amd64.deb) ...
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+Selecting previously unselected package libice6.
+Unpacking libice6 (from .../libice6_2%3a1.0.7-2_amd64.deb) ...
+Selecting previously unselected package libpixman-1-0.
+Unpacking libpixman-1-0 (from .../libpixman-1-0_0.22.2-1_amd64.deb) ...
+Selecting previously unselected package libxau6.
+Unpacking libxau6 (from .../libxau6_1%3a1.0.6-3_amd64.deb) ...
+Selecting previously unselected package libxdmcp6.
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+Selecting previously unselected package libxrender1.
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+Selecting previously unselected package libcairo2.
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+Selecting previously unselected package libglib2.0-0.
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Unpacking intltool-debian (from .../intltool-debian_0.35.0+20060710.1_all.deb) ...
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Unpacking xdg-utils (from .../xdg-utils_1.1.0~rc1-2_all.deb) ...
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+Unpacking tcl8.5 (from .../tcl8.5_8.5.10-1_amd64.deb) ...
+Selecting previously unselected package tk8.5.
+Unpacking tk8.5 (from .../tk8.5_8.5.10-1_amd64.deb) ...
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+Unpacking r-base-core (from .../r-base-core_2.14.0~20111015-1_amd64.deb) ...
+Selecting previously unselected package r-base-dev.
+Unpacking r-base-dev (from .../r-base-dev_2.14.0~20111015-1_all.deb) ...
+Selecting previously unselected package r-bioc-limma.
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Unpacking sbuild-build-depends-r-bioc-edger-dummy (from .../sbuild-build-depends-r-bioc-edger-dummy.deb) ...
-Setting up bsdmainutils (8.2.2) ...
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-update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode.
-Setting up groff-base (1.21-5) ...
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-Setting up gettext-base (0.18.1.1-3) ...
-Setting up libpcre3 (8.12-3) ...
-Setting up libxml2 (2.7.8.dfsg-2+b1) ...
+Setting up libpipeline1 (1.2.0-3) ...
+Setting up libpcre3 (8.12-4) ...
+Setting up libdatrie1 (0.2.4-3) ...
+Setting up libexpat1 (2.0.1-7) ...
+Setting up libfreetype6 (2.4.6-2) ...
Setting up ucf (3.0025+nmu2) ...
-Setting up html2text (1.3.2a-15) ...
-Setting up libglib2.0-0 (2.28.6-1) ...
+Setting up ttf-dejavu-core (2.33-2) ...
+Setting up fontconfig-config (2.8.0-3) ...
+Setting up libfontconfig1 (2.8.0-3) ...
+Setting up libgfortran3 (4.6.1-15) ...
+Setting up x11-common (1:7.6+9) ...
+All runlevel operations denied by policy
+invoke-rc.d: policy-rc.d denied execution of start.
+Setting up libice6 (2:1.0.7-2) ...
+Setting up libpixman-1-0 (0.22.2-1) ...
+Setting up libxau6 (1:1.0.6-3) ...
+Setting up libxdmcp6 (1:1.1.0-3) ...
+Setting up libxcb1 (1.7-3) ...
+Setting up libx11-data (2:1.4.4-2) ...
+Setting up libx11-6 (2:1.4.4-2) ...
+Setting up libxcb-render0 (1.7-3) ...
+Setting up libxcb-shm0 (1.7-3) ...
+Setting up libxrender1 (1:0.9.6-2) ...
+Setting up libcairo2 (1.10.2-6.1) ...
+Setting up libglib2.0-0 (2.28.8-1) ...
No schema files found: doing nothing.
+Setting up libthai-data (0.1.15-2) ...
+Setting up libthai0 (0.1.15-2) ...
+Setting up libxft2 (2.2.0-3) ...
+Setting up fontconfig (2.8.0-3) ...
+Cleaning up old fontconfig caches... done.
+Regenerating fonts cache... done.
+Setting up libpango1.0-0 (1.29.4-1) ...
+Setting up libpcrecpp0 (8.12-4) ...
+Setting up libsm6 (2:1.2.0-2) ...
+Setting up libjpeg8 (8c-2) ...
+Setting up libtiff4 (3.9.5-2) ...
+Setting up libxext6 (2:1.3.0-3) ...
+Setting up libxss1 (1:1.2.1-2) ...
+Setting up libxt6 (1:1.1.1-2) ...
+Setting up groff-base (1.21-6) ...
+Setting up man-db (2.6.0.2-2) ...
+Building database of manual pages ...
+Setting up libmagic1 (5.09-1) ...
+Setting up file (5.09-1) ...
+Setting up gettext-base (0.18.1.1-5) ...
+Setting up libxml2 (2.7.8.dfsg-5) ...
+Setting up cdbs (0.4.99) ...
+Setting up html2text (1.3.2a-15) ...
Setting up libcroco3 (0.6.2-1) ...
Setting up libunistring0 (0.9.3-4) ...
-Setting up gettext (0.18.1.1-3) ...
+Setting up gettext (0.18.1.1-5) ...
Setting up intltool-debian (0.35.0+20060710.1) ...
Setting up po-debconf (1.0.16+nmu1) ...
-Setting up debhelper (8.1.6) ...
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-Setting up dpatch (2.0.31) ...
-Setting up libexpat1 (2.0.1-7) ...
-Setting up libfreetype6 (2.4.4-1) ...
-Setting up ttf-dejavu-core (2.33-1) ...
-Setting up fontconfig-config (2.8.0-2.2) ...
-Setting up libfontconfig1 (2.8.0-2.2) ...
-Setting up fontconfig (2.8.0-2.2) ...
-Cleaning up old fontconfig caches... done.
-Regenerating fonts cache... done.
-Setting up libgfortran3 (4.6.0-10) ...
-Setting up gfortran-4.6 (4.6.0-10) ...
-Setting up gfortran (4:4.6.0-5) ...
+Setting up debhelper (8.9.8) ...
+Setting up dpatch (2.0.32) ...
+Setting up gfortran-4.6 (4.6.1-15) ...
+Setting up gfortran (4:4.6.1-3) ...
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode.
-Setting up libblas3gf (1.2-8) ...
+Setting up libblas3gf (1.2.20110419-2) ...
update-alternatives: using /usr/lib/libblas/libblas.so.3gf to provide /usr/lib/libblas.so.3gf (libblas.so.3gf) in auto mode.
-Setting up libblas-dev (1.2-8) ...
+Setting up libblas-dev (1.2.20110419-2) ...
update-alternatives: using /usr/lib/libblas/libblas.so to provide /usr/lib/libblas.so (libblas.so) in auto mode.
-Setting up libbz2-dev (1.0.5-6) ...
-Setting up libpixman-1-0 (0.21.8-1) ...
-Setting up libpng12-0 (1.2.44-2) ...
-Setting up libxau6 (1:1.0.6-1) ...
-Setting up libxdmcp6 (1:1.1.0-1) ...
-Setting up libxcb1 (1.7-2) ...
-Setting up libx11-data (2:1.4.3-1) ...
-Setting up libx11-6 (2:1.4.3-1) ...
-Setting up libxcb-render0 (1.7-2) ...
-Setting up libxcb-shm0 (1.7-2) ...
-Setting up libxrender1 (1:0.9.6-1) ...
-Setting up libcairo2 (1.10.2-6) ...
-Setting up libdatrie1 (0.2.4-2) ...
-Setting up x11-common (1:7.6+6) ...
-All runlevel operations denied by policy
-invoke-rc.d: policy-rc.d denied execution of start.
-Setting up libice6 (2:1.0.7-1) ...
-Setting up libjpeg62 (6b1-1) ...
-Setting up libjpeg62-dev (6b1-1) ...
-Setting up liblapack3gf (3.3.0-4) ...
+Setting up libbz2-dev (1.0.5-7) ...
+Setting up libjpeg8-dev (8c-2) ...
+Setting up liblapack3gf (3.3.1-1) ...
update-alternatives: using /usr/lib/lapack/liblapack.so.3gf to provide /usr/lib/liblapack.so.3gf (liblapack.so.3gf) in auto mode.
-Setting up liblapack-dev (3.3.0-4) ...
+Setting up liblapack-dev (3.3.1-1) ...
update-alternatives: using /usr/lib/lapack/liblapack.so to provide /usr/lib/liblapack.so (liblapack.so) in auto mode.
-Setting up libncurses5-dev (5.9-1) ...
-Setting up libthai-data (0.1.15-1) ...
-Setting up libthai0 (0.1.15-1) ...
-Setting up libxft2 (2.2.0-2) ...
-Setting up libpango1.0-0 (1.28.3-6) ...
+Setting up libtinfo-dev (5.9-2) ...
+Setting up libncurses5-dev (5.9-2) ...
Setting up libpaper1 (1.1.24+nmu1) ...
Creating config file /etc/papersize with new version
Setting up libpaper-utils (1.1.24+nmu1) ...
-Setting up libpcrecpp0 (8.12-3) ...
-Setting up libpcre3-dev (8.12-3) ...
+Setting up libpcre3-dev (8.12-4) ...
Setting up zlib1g-dev (1:1.2.3.4.dfsg-3) ...
-Setting up libpng12-dev (1.2.44-2) ...
-Setting up libreadline6-dev (6.2-2) ...
-Setting up libreadline-dev (6.2-2) ...
-Setting up libsm6 (2:1.2.0-1) ...
-Setting up libtiff4 (3.9.5-1) ...
-Setting up libxext6 (2:1.3.0-1) ...
-Setting up libxss1 (1:1.2.1-1) ...
-Setting up libxt6 (1:1.1.1-1) ...
-Setting up zip (3.0-3) ...
-Setting up unzip (6.0-4) ...
+Setting up libpng12-dev (1.2.46-3) ...
+Setting up libreadline6-dev (6.2-7) ...
+Setting up libreadline-dev (6.2-7) ...
+Setting up zip (3.0-4) ...
+Setting up unzip (6.0-5) ...
Setting up xdg-utils (1.1.0~rc1-2) ...
-Setting up tcl8.5 (8.5.9-2) ...
+Setting up tcl8.5 (8.5.10-1) ...
update-alternatives: using /usr/bin/tclsh8.5 to provide /usr/bin/tclsh (tclsh) in auto mode.
-Setting up tk8.5 (8.5.9-2) ...
+Setting up tk8.5 (8.5.10-1) ...
update-alternatives: using /usr/bin/wish8.5 to provide /usr/bin/wish (wish) in auto mode.
-Setting up r-base-core (2.13.0-2) ...
+Setting up r-base-core (2.14.0~20111015-1) ...
Setting R_PAPERSIZE_USER default to 'a4'
Creating config file /etc/R/Renviron with new version
-Setting up r-base-dev (2.13.0-2) ...
-Setting up r-bioc-limma (3.8.2-1) ...
+Setting up r-base-dev (2.14.0~20111015-1) ...
+Setting up r-bioc-limma (3.8.3-1) ...
Setting up sbuild-build-depends-r-bioc-edger-dummy (0.invalid.0) ...
┌──────────────────────────────────────────────────────────────────────────────┐
│ Build environment │
└──────────────────────────────────────────────────────────────────────────────┘
-Kernel: Linux 2.6.32-5-amd64 amd64 (x86_64)
-Toolchain package versions: binutils_2.21.51.20110523-1 dpkg-dev_1.16.0.3 g++-4.6_4.6.0-10 gcc-4.6_4.6.0-10 libc6-dev_2.13-4 libstdc++6_4.6.0-10 libstdc++6-4.6-dev_4.6.0-10 linux-libc-dev_2.6.39-1+b1
-Package versions: apt_0.8.14.1 base-files_6.4 base-passwd_3.5.22 bash_4.1-3 binutils_2.21.51.20110523-1 bsdmainutils_8.2.2 bsdutils_1:2.17.2-9.1 build-essential_11.5 bzip2_1.0.5-6 cdbs_0.4.94 coreutils_8.5-1 cpp_4:4.6.0-5 cpp-4.6_4.6.0-10 dash_0.5.5.1-7.4 debconf_1.5.39 debconf-i18n_1.5.39 debfoster_2.7-1.1 debhelper_8.1.6 debian-archive-keyring_2010.08.28 debianutils_4.0.1 diffutils_1:3.0-1 dpatch_2.0.31 dpkg_1.16.0.3 dpkg-dev_1.16.0.3 e2fslibs_1.41.12-4 e2fsprogs_1.41.12-4 fakeroot_1.15.1-1 file_5.04-5+b1 findutils_4.4.2-1+b1 fontconfig_2.8.0-2.2 fontconfig-config_2.8.0-2.2 g++_4:4.6.0-5 g++-4.6_4.6.0-10 gcc_4:4.6.0-5 gcc-4.6_4.6.0-10 gcc-4.6-base_4.6.0-10 gettext_0.18.1.1-3 gettext-base_0.18.1.1-3 gfortran_4:4.6.0-5 gfortran-4.6_4.6.0-10 gnupg_1.4.11-3 gpgv_1.4.11-3 grep_2.8-2 groff-base_1.21-5 gzip_1.3.12-9 hostname_3.06 html2text_1.3.2a-15 initscripts_2.88dsf-13.7 insserv_1.14.0-2.1 intltool-debian_0.35.0+20060710.1 libacl1_2.2.49-5 libattr1_1:2.4.44-3 libblas-dev_1.2-8 libblas3gf_1.2-8 libblkid1_2.17.2-9.1 libbz2-1.0_1.0.5-6 libbz2-dev_1.0.5-6 libc-bin_2.13-4 libc-dev-bin_2.13-4 libc6_2.13-4 libc6-dev_2.13-4 libcairo2_1.10.2-6 libclass-isa-perl_0.36-1 libcloog-ppl0_0.15.9-3 libcomerr2_1.41.12-4 libcroco3_0.6.2-1 libdatrie1_0.2.4-2 libdb4.7_4.7.25-19 libdb4.8_4.8.30-8 libdb5.1_5.1.25-10 libdpkg-perl_1.16.0.3 libelfg0_0.8.13-1 libexpat1_2.0.1-7 libfontconfig1_2.8.0-2.2 libfreetype6_2.4.4-1 libgc1c2_1:7.1-8 libgcc1_1:4.6.0-10 libgdbm3_1.8.3-9 libgfortran3_4.6.0-10 libglib2.0-0_2.28.6-1 libgmp10_2:5.0.1+dfsg-7 libgmpxx4ldbl_2:5.0.1+dfsg-7 libgomp1_4.6.0-10 libice6_2:1.0.7-1 libjpeg62_6b1-1 libjpeg62-dev_6b1-1 liblapack-dev_3.3.0-4 liblapack3gf_3.3.0-4 liblocale-gettext-perl_1.05-6+b1 liblzma2_5.0.0-2 libmagic1_5.04-5+b1 libmpc2_0.9-3 libmpfr4_3.0.1-3 libncurses5_5.9-1 libncurses5-dev_5.9-1 libpam-modules_1.1.2-3 libpam-runtime_1.1.2-3 libpam0g_1.1.2-3 libpango1.0-0_1.28.3-6 libpaper-utils_1.1.24+nmu1 libpaper1_1.1.24+nmu1 libpcre3_8.12-3 libpcre3-dev_8.12-3 libpcrecpp0_8.12-3 libpipeline1_1.2.0-2 libpixman-1-0_0.21.8-1 libpng12-0_1.2.44-2 libpng12-dev_1.2.44-2 libpod-plainer-perl_1.03-1 libppl-c4_0.11.2-3 libppl9_0.11.2-3 libpwl5_0.11.2-3 libquadmath0_4.6.0-10 libreadline-dev_6.2-2 libreadline6_6.2-2 libreadline6-dev_6.2-2 libselinux1_2.0.98-1+b1 libsepol1_2.0.42-1 libslang2_2.2.4-2 libsm6_2:1.2.0-1 libss2_1.41.12-4 libstdc++6_4.6.0-10 libstdc++6-4.6-dev_4.6.0-10 libswitch-perl_2.16-1 libtext-charwidth-perl_0.04-6+b1 libtext-iconv-perl_1.7-2+b1 libtext-wrapi18n-perl_0.06-7 libthai-data_0.1.15-1 libthai0_0.1.15-1 libtiff4_3.9.5-1 libtimedate-perl_1.2000-1 libunistring0_0.9.3-4 libusb-0.1-4_2:0.1.12-17 libuuid1_2.17.2-9.1 libx11-6_2:1.4.3-1 libx11-data_2:1.4.3-1 libxau6_1:1.0.6-1 libxcb-render0_1.7-2 libxcb-shm0_1.7-2 libxcb1_1.7-2 libxdmcp6_1:1.1.0-1 libxext6_2:1.3.0-1 libxft2_2.2.0-2 libxml2_2.7.8.dfsg-2+b1 libxrender1_1:0.9.6-1 libxss1_1:1.2.1-1 libxt6_1:1.1.1-1 linux-libc-dev_2.6.39-1+b1 login_1:4.1.4.2+svn3283-3 lsb-base_3.2-27 make_3.81-8.1 man-db_2.6.0.2-1 mawk_1.3.3-15 mount_2.17.2-9.1 ncurses-base_5.9-1 ncurses-bin_5.9-1 passwd_1:4.1.4.2+svn3283-3 patch_2.6.1-2 perl_5.12.3-7 perl-base_5.12.3-7 perl-modules_5.12.3-7 po-debconf_1.0.16+nmu1 r-base-core_2.13.0-2 r-base-dev_2.13.0-2 r-bioc-limma_3.8.2-1 readline-common_6.2-2 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-r-bioc-edger-dummy_0.invalid.0 sed_4.2.1-9 sensible-utils_0.0.6 sysv-rc_2.88dsf-13.7 sysvinit_2.88dsf-13.7 sysvinit-utils_2.88dsf-13.7 tar_1.25-3 tcl8.5_8.5.9-2 tk8.5_8.5.9-2 ttf-dejavu-core_2.33-1 tzdata_2011g-1 ucf_3.0025+nmu2 unzip_6.0-4 util-linux_2.17.2-9.1 x11-common_1:7.6+6 xdg-utils_1.1.0~rc1-2 xz-utils_5.0.0-2 zip_3.0-3 zlib1g_1:1.2.3.4.dfsg-3 zlib1g-dev_1:1.2.3.4.dfsg-3
+Kernel: Linux 2.6.39-bpo.2-amd64 amd64 (x86_64)
+Toolchain package versions: binutils_2.21.90.20111004-2 dpkg-dev_1.16.1.1 g++-4.6_4.6.1-15 gcc-4.6_4.6.1-15 libc6-dev_2.13-21 libstdc++6_4.6.1-15 libstdc++6-4.6-dev_4.6.1-15 linux-libc-dev_3.0.0-5
+Package versions: apt_0.8.15.9 base-files_6.5 base-passwd_3.5.23 bash_4.1-3 binutils_2.21.90.20111004-2 bsdmainutils_8.2.3 bsdutils_1:2.19.1-5 build-essential_11.5 bzip2_1.0.5-7 cdbs_0.4.99 coreutils_8.13-3 cpp_4:4.6.1-3 cpp-4.6_4.6.1-15 dash_0.5.7-2 debconf_1.5.41 debconf-i18n_1.5.41 debfoster_2.7-1.1 debhelper_8.9.8 debian-archive-keyring_2010.08.28 debianutils_4.0.4 diffutils_1:3.2-1 dpatch_2.0.32 dpkg_1.16.1.1 dpkg-dev_1.16.1.1 e2fslibs_1.42~WIP-2011-10-16-1 e2fsprogs_1.42~WIP-2011-10-16-1 fakeroot_1.18.1-1 file_5.09-1 findutils_4.4.2-1+b1 fontconfig_2.8.0-3 fontconfig-config_2.8.0-3 g++_4:4.6.1-3 g++-4.6_4.6.1-15 gcc_4:4.6.1-3 gcc-4.6_4.6.1-15 gcc-4.6-base_4.6.1-15 gettext_0.18.1.1-5 gettext-base_0.18.1.1-5 gfortran_4:4.6.1-3 gfortran-4.6_4.6.1-15 gnupg_1.4.11-3 gpgv_1.4.11-3 grep_2.9-2 groff-base_1.21-6 gzip_1.4-1 hostname_3.06 html2text_1.3.2a-15 initscripts_2.88dsf-13.12 insserv_1.14.0-2.1 intltool-debian_0.35.0+20060710.1 libacl1_2.2.51-3 libattr1_1:2.4.46-3 libblas-dev_1.2.20110419-2 libblas3gf_1.2.20110419-2 libblkid1_2.19.1-5 libbz2-1.0_1.0.5-7 libbz2-dev_1.0.5-7 libc-bin_2.13-21 libc-dev-bin_2.13-21 libc6_2.13-21 libc6-dev_2.13-21 libcairo2_1.10.2-6.1 libclass-isa-perl_0.36-2 libcomerr2_1.42~WIP-2011-10-16-1 libcroco3_0.6.2-1 libdatrie1_0.2.4-3 libdb5.1_5.1.25-11 libdpkg-perl_1.16.1.1 libexpat1_2.0.1-7 libfontconfig1_2.8.0-3 libfreetype6_2.4.6-2 libgc1c2_1:7.1-8 libgcc1_1:4.6.1-15 libgdbm3_1.8.3-10 libgfortran3_4.6.1-15 libglib2.0-0_2.28.8-1 libgmp10_2:5.0.2+dfsg-1 libgomp1_4.6.1-15 libgpm2_1.20.4-4 libice6_2:1.0.7-2 libjpeg8_8c-2 libjpeg8-dev_8c-2 liblapack-dev_3.3.1-1 liblapack3gf_3.3.1-1 liblocale-gettext-perl_1.05-7 liblzma2_5.1.1alpha+20110809-2 libmagic1_5.09-1 libmount1_2.19.1-5 libmpc2_0.9-4 libmpfr4_3.1.0-2 libncurses5_5.9-2 libncurses5-dev_5.9-2 libpam-modules_1.1.3-4 libpam-modules-bin_1.1.3-4 libpam-runtime_1.1.3-4 libpam0g_1.1.3-4 libpango1.0-0_1.29.4-1 libpaper-utils_1.1.24+nmu1 libpaper1_1.1.24+nmu1 libpcre3_8.12-4 libpcre3-dev_8.12-4 libpcrecpp0_8.12-4 libpipeline1_1.2.0-3 libpixman-1-0_0.22.2-1 libpng12-0_1.2.46-3 libpng12-dev_1.2.46-3 libpod-plainer-perl_1.03-1 libquadmath0_4.6.1-15 libreadline-dev_6.2-7 libreadline6_6.2-7 libreadline6-dev_6.2-7 libselinux1_2.1.0-1 libsepol1_2.1.0-1.1 libslang2_2.2.4-3 libsm6_2:1.2.0-2 libss2_1.42~WIP-2011-10-16-1 libstdc++6_4.6.1-15 libstdc++6-4.6-dev_4.6.1-15 libswitch-perl_2.16-2 libtext-charwidth-perl_0.04-7 libtext-iconv-perl_1.7-4 libtext-wrapi18n-perl_0.06-7 libthai-data_0.1.15-2 libthai0_0.1.15-2 libtiff4_3.9.5-2 libtimedate-perl_1.2000-1 libtinfo-dev_5.9-2 libtinfo5_5.9-2 libunistring0_0.9.3-4 libusb-0.1-4_2:0.1.12-19 libuuid1_2.19.1-5 libx11-6_2:1.4.4-2 libx11-data_2:1.4.4-2 libxau6_1:1.0.6-3 libxcb-render0_1.7-3 libxcb-shm0_1.7-3 libxcb1_1.7-3 libxdmcp6_1:1.1.0-3 libxext6_2:1.3.0-3 libxft2_2.2.0-3 libxml2_2.7.8.dfsg-5 libxrender1_1:0.9.6-2 libxss1_1:1.2.1-2 libxt6_1:1.1.1-2 linux-libc-dev_3.0.0-5 login_1:4.1.4.2+svn3283-3 lsb-base_3.2-28 make_3.81-8.1 man-db_2.6.0.2-2 mawk_1.3.3-15 mount_2.19.1-5 multiarch-support_2.13-21 ncurses-base_5.9-2 ncurses-bin_5.9-2 passwd_1:4.1.4.2+svn3283-3 patch_2.6.1-2 perl_5.12.4-6 perl-base_5.12.4-6 perl-modules_5.12.4-6 po-debconf_1.0.16+nmu1 r-base-core_2.14.0~20111015-1 r-base-dev_2.14.0~20111015-1 r-bioc-limma_3.8.3-1 readline-common_6.2-7 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-r-bioc-edger-dummy_0.invalid.0 sed_4.2.1-9 sensible-utils_0.0.6 sysv-rc_2.88dsf-13.12 sysvinit_2.88dsf-13.12 sysvinit-utils_2.88dsf-13.12 tar_1.26-2 tcl8.5_8.5.10-1 tk8.5_8.5.10-1 ttf-dejavu-core_2.33-2 tzdata_2011l-2 ucf_3.0025+nmu2 unzip_6.0-5 util-linux_2.19.1-5 x11-common_1:7.6+9 xdg-utils_1.1.0~rc1-2 xz-utils_5.1.1alpha+20110809-2 zip_3.0-4 zlib1g_1:1.2.3.4.dfsg-3 zlib1g-dev_1:1.2.3.4.dfsg-3
┌──────────────────────────────────────────────────────────────────────────────┐
│ Build │
@@ -388,28 +375,40 @@ Package versions: apt_0.8.14.1 base-files_6.4 base-passwd_3.5.22 bash_4.1-3 binu
Unpack source
─────────────
-dpkg-source: warning: extracting unsigned source package (r-bioc-edger_2.2.5-1.dsc)
-dpkg-source: info: extracting r-bioc-edger in r-bioc-edger-2.2.5
-dpkg-source: info: unpacking r-bioc-edger_2.2.5.orig.tar.gz
-dpkg-source: info: applying r-bioc-edger_2.2.5-1.diff.gz
+dpkg-source: warning: extracting unsigned source package (r-bioc-edger_2.2.6-1.dsc)
+dpkg-source: info: extracting r-bioc-edger in r-bioc-edger-2.2.6
+dpkg-source: info: unpacking r-bioc-edger_2.2.6.orig.tar.gz
+dpkg-source: info: applying r-bioc-edger_2.2.6-1.diff.gz
Check disc space
────────────────
Sufficient free space for build
+User Environment
+────────────────
+
+HOME=/sbuild-nonexistent
+LOGNAME=charles
+PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
+SCHROOT_CHROOT_NAME=sid-amd64-sbuild
+SCHROOT_COMMAND=env
+SCHROOT_GID=1000
+SCHROOT_GROUP=charles
+SCHROOT_SESSION_ID=sid-amd64-sbuild-c13d5073-76d7-47d3-a86c-588c45b34881
+SCHROOT_UID=31051
+SCHROOT_USER=charles
+SHELL=/bin/sh
+TERM=xterm-color
+USER=charles
+
dpkg-buildpackage
─────────────────
-dpkg-buildpackage: export CFLAGS from dpkg-buildflags (origin: vendor): -g -O2
-dpkg-buildpackage: export CPPFLAGS from dpkg-buildflags (origin: vendor):
-dpkg-buildpackage: export CXXFLAGS from dpkg-buildflags (origin: vendor): -g -O2
-dpkg-buildpackage: export FFLAGS from dpkg-buildflags (origin: vendor): -g -O2
-dpkg-buildpackage: export LDFLAGS from dpkg-buildflags (origin: vendor):
dpkg-buildpackage: source package r-bioc-edger
-dpkg-buildpackage: source version 2.2.5-1
+dpkg-buildpackage: source version 2.2.6-1
dpkg-buildpackage: source changed by Charles Plessy <plessy at debian.org>
- dpkg-source --before-build r-bioc-edger-2.2.5
+ dpkg-source --before-build r-bioc-edger-2.2.6
dpkg-buildpackage: host architecture amd64
fakeroot debian/rules clean
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
@@ -417,9 +416,9 @@ test -x debian/rules
dh_testroot
/usr/bin/make -f debian/rules reverse-config
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
-make[1]: Entering directory `/«BUILDDIR»/r-bioc-edger-2.2.5'
+make[1]: Entering directory `/«PKGBUILDDIR»'
make[1]: Nothing to be done for `reverse-config'.
-make[1]: Leaving directory `/«BUILDDIR»/r-bioc-edger-2.2.5'
+make[1]: Leaving directory `/«PKGBUILDDIR»'
if [ "reverse-patches" = "reverse-patches" ]; then rm -f debian/stamp-patched; fi
patches:
if [ "reverse-patches" != "reverse-patches" ]; then touch debian/stamp-patched; fi
@@ -435,21 +434,22 @@ if test -d src; then \
xargs --no-run-if-empty -r rm; \
fi
rm -f config.log config.status
- dpkg-source -b r-bioc-edger-2.2.5
+ dpkg-source -b r-bioc-edger-2.2.6
dpkg-source: warning: no source format specified in debian/source/format, see dpkg-source(1)
dpkg-source: info: using source format `1.0'
-dpkg-source: info: building r-bioc-edger using existing r-bioc-edger_2.2.5.orig.tar.gz
-dpkg-source: info: building r-bioc-edger in r-bioc-edger_2.2.5-1.diff.gz
-dpkg-source: info: building r-bioc-edger in r-bioc-edger_2.2.5-1.dsc
+dpkg-source: info: building r-bioc-edger using existing r-bioc-edger_2.2.6.orig.tar.gz
+dpkg-source: info: building r-bioc-edger in r-bioc-edger_2.2.6-1.diff.gz
+dpkg-source: info: building r-bioc-edger in r-bioc-edger_2.2.6-1.dsc
debian/rules build
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
test -x debian/rules
mkdir -p "."
+/usr/share/cdbs/1/rules/buildcore.mk:109: WARNING: DEB_DH_BUILDDEB_ARGS is a deprecated variable
/usr/bin/make -f debian/rules reverse-config
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
-make[1]: Entering directory `/«BUILDDIR»/r-bioc-edger-2.2.5'
+make[1]: Entering directory `/«PKGBUILDDIR»'
make[1]: Nothing to be done for `reverse-config'.
-make[1]: Leaving directory `/«BUILDDIR»/r-bioc-edger-2.2.5'
+make[1]: Leaving directory `/«PKGBUILDDIR»'
if [ "debian/stamp-patched" = "reverse-patches" ]; then rm -f debian/stamp-patched; fi
patches:
if [ "debian/stamp-patched" != "reverse-patches" ]; then touch debian/stamp-patched; fi
@@ -457,9 +457,9 @@ if [ "debian/stamp-patched" != "reverse-patches" ] ; then \
/usr/bin/make -f debian/rules update-config ; \
fi
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
-make[1]: Entering directory `/«BUILDDIR»/r-bioc-edger-2.2.5'
+make[1]: Entering directory `/«PKGBUILDDIR»'
make[1]: Nothing to be done for `update-config'.
-make[1]: Leaving directory `/«BUILDDIR»/r-bioc-edger-2.2.5'
+make[1]: Leaving directory `/«PKGBUILDDIR»'
fakeroot debian/rules binary
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
test -x debian/rules
@@ -467,13 +467,14 @@ dh_testroot
dh_prep
dh_installdirs -A
mkdir -p "."
+/usr/share/cdbs/1/rules/buildcore.mk:109: WARNING: DEB_DH_BUILDDEB_ARGS is a deprecated variable
dh_installdirs usr/lib/R/site-library
if test -f /usr/bin/xvfb-run; then \
- xvfb-run \
- R CMD INSTALL -l /«BUILDDIR»/r-bioc-edger-2.2.5/debian/r-bioc-edger/usr/lib/R/site-library --clean \
+ xvfb-run -a \
+ R CMD INSTALL -l /«PKGBUILDDIR»/debian/r-bioc-edger/usr/lib/R/site-library --clean \
. ; \
else \
- R CMD INSTALL -l /«BUILDDIR»/r-bioc-edger-2.2.5/debian/r-bioc-edger/usr/lib/R/site-library \
+ R CMD INSTALL -l /«PKGBUILDDIR»/debian/r-bioc-edger/usr/lib/R/site-library \
--clean . ;\
fi
* installing *source* package 'edgeR' ...
@@ -484,20 +485,22 @@ if test -f /usr/bin/xvfb-run; then \
** help
*** installing help indices
** building package indices ...
+*** tangling vignette sources ...
+ 'edgeR.Rnw'
** testing if installed package can be loaded
* DONE (edgeR)
-rm -vf /«BUILDDIR»/r-bioc-edger-2.2.5/debian/r-bioc-edger/usr/lib/R/site-library/R.css \
- /«BUILDDIR»/r-bioc-edger-2.2.5/debian/r-bioc-edger/usr/lib/R/site-library/edgeR/COPYING \
- /«BUILDDIR»/r-bioc-edger-2.2.5/debian/r-bioc-edger/usr/lib/R/site-library/edgeR/LICENSE.txt
+rm -vf /«PKGBUILDDIR»/debian/r-bioc-edger/usr/lib/R/site-library/R.css \
+ /«PKGBUILDDIR»/debian/r-bioc-edger/usr/lib/R/site-library/edgeR/COPYING \
+ /«PKGBUILDDIR»/debian/r-bioc-edger/usr/lib/R/site-library/edgeR/LICENSE.txt
if test -f debian/overrides; then \
- install -d /«BUILDDIR»/r-bioc-edger-2.2.5/debian/r-bioc-edger/usr/share/lintian/overrides ; \
+ install -d /«PKGBUILDDIR»/debian/r-bioc-edger/usr/share/lintian/overrides ; \
install -m 0644 debian/overrides \
- /«BUILDDIR»/r-bioc-edger-2.2.5/debian/r-bioc-edger/usr/share/lintian/overrides/r-bioc-edger; \
+ /«PKGBUILDDIR»/debian/r-bioc-edger/usr/share/lintian/overrides/r-bioc-edger; \
fi
Adding cdbs dependencies to debian/r-bioc-edger.substvars
dh_installdirs -pr-bioc-edger
-echo "R:Depends=r-base-core (>= 2.13.0~)" >> debian/r-bioc-edger.substvars
+echo "R:Depends=r-base-core (>= 2.14.0~)" >> debian/r-bioc-edger.substvars
dh_installdocs -pr-bioc-edger
dh_installexamples -pr-bioc-edger
dh_installman -pr-bioc-edger
@@ -528,14 +531,14 @@ dh_perl -pr-bioc-edger
dh_shlibdeps -pr-bioc-edger
dh_gencontrol -pr-bioc-edger
dh_md5sums -pr-bioc-edger
-dh_builddeb -pr-bioc-edger
-dpkg-deb: building package `r-bioc-edger' in `../r-bioc-edger_2.2.5-1_all.deb'.
- dpkg-genchanges >../r-bioc-edger_2.2.5-1_amd64.changes
+dh_builddeb -pr-bioc-edger -- -Z xz
+dpkg-deb: building package `r-bioc-edger' in `../r-bioc-edger_2.2.6-1_all.deb'.
+ dpkg-genchanges >../r-bioc-edger_2.2.6-1_amd64.changes
dpkg-genchanges: including full source code in upload
- dpkg-source --after-build r-bioc-edger-2.2.5
+ dpkg-source --after-build r-bioc-edger-2.2.6
dpkg-buildpackage: full upload (original source is included)
────────────────────────────────────────────────────────────────────────────────
-Build finished at 20110603-1524
+Build finished at 20111019-1532
Finished
────────
@@ -547,60 +550,60 @@ I: Built successfully
└──────────────────────────────────────────────────────────────────────────────┘
-r-bioc-edger_2.2.5-1_amd64.changes:
+r-bioc-edger_2.2.6-1_amd64.changes:
───────────────────────────────────
Format: 1.8
-Date: Fri, 03 Jun 2011 15:22:29 +0900
+Date: Wed, 19 Oct 2011 15:29:52 +0900
Source: r-bioc-edger
Binary: r-bioc-edger
Architecture: source all
-Version: 2.2.5-1
+Version: 2.2.6-1
Distribution: unstable
Urgency: low
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
Changed-By: Charles Plessy <plessy at debian.org>
Description:
r-bioc-edger - Empirical analysis of digital gene expression data in R
-Closes: 628882
Changes:
- r-bioc-edger (2.2.5-1) unstable; urgency=low
+ r-bioc-edger (2.2.6-1) unstable; urgency=low
.
- * Initial release (Closes: #628882)
+ [c9512e2] New upstream release.
+ [40876f8] Compress binary package with xz.
Checksums-Sha1:
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- 49df47e5a37764858364ca79025ecdbe3456d7d1 2320471 r-bioc-edger_2.2.5.orig.tar.gz
- 4eadf4ec5f185a2e88fe63fa57aa8df327625842 2388 r-bioc-edger_2.2.5-1.diff.gz
- 8b5d03a6991b6109f6ba6780363b0fc51d5ab311 2520492 r-bioc-edger_2.2.5-1_all.deb
+ 824e628dff9e6e5b9d7cad6a84a0094fdae27909 1154 r-bioc-edger_2.2.6-1.dsc
+ 7066d9eb7c7e2a20e160639b661c2571e5d63710 2320529 r-bioc-edger_2.2.6.orig.tar.gz
+ c72d514bc4a1a090af85981d41fac96715ffed4b 2443 r-bioc-edger_2.2.6-1.diff.gz
+ e89a6f92d6d0efc623c924c897adbdaee3dac7ea 2349128 r-bioc-edger_2.2.6-1_all.deb
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- 20fe732ece345f75a76195b9523d611ff5b9a2ba41de0a36092a678571379f89 2320471 r-bioc-edger_2.2.5.orig.tar.gz
- ad40ac6d75dc1234772bef48ee99cdddb2155998f3a1235885c5df9fc034442e 2388 r-bioc-edger_2.2.5-1.diff.gz
- 529fb0510c121ff87c3360d0e25b9a9c323fae0dbb818cff12e192abcddeacce 2520492 r-bioc-edger_2.2.5-1_all.deb
+ 919f041a63ff6ea1390ae0be7aecde71043bfdcba0877a62a8d5d4cb0a9ee056 1154 r-bioc-edger_2.2.6-1.dsc
+ fdd7ca78c817e7d0d0e5d41ab2382bfb1021fb7a59bf4693d7b05d989e5685cd 2320529 r-bioc-edger_2.2.6.orig.tar.gz
+ 19956af815df84626848da3420d372db67b282c95c8f3b4f1381f634e46f327d 2443 r-bioc-edger_2.2.6-1.diff.gz
+ 92f76af94c1a46f3fd2b30221de05e9e59bdd5d615ffe973285f3fb62464d2fe 2349128 r-bioc-edger_2.2.6-1_all.deb
Files:
- 43e7a77b87ee1f51f5eb17bc5ca9f4b4 1106 gnu-r optional r-bioc-edger_2.2.5-1.dsc
- 92968a8ada4c28db39a953a610ca42e7 2320471 gnu-r optional r-bioc-edger_2.2.5.orig.tar.gz
- 659a9927bcdb0a66ea1423a15db7b228 2388 gnu-r optional r-bioc-edger_2.2.5-1.diff.gz
- 7d600cd4181bbd2cbaba8ead538fbc57 2520492 gnu-r optional r-bioc-edger_2.2.5-1_all.deb
+ 628f81628bb56a4f5340af6837a74107 1154 gnu-r optional r-bioc-edger_2.2.6-1.dsc
+ 75de42f2f81018a70330bf129fcabfb0 2320529 gnu-r optional r-bioc-edger_2.2.6.orig.tar.gz
+ fc190d545c8067c22341b7f7dd5f38d8 2443 gnu-r optional r-bioc-edger_2.2.6-1.diff.gz
+ 781f3cf4683ecd1842dcc93dcae32752 2349128 gnu-r optional r-bioc-edger_2.2.6-1_all.deb
┌──────────────────────────────────────────────────────────────────────────────┐
│ Package contents │
└──────────────────────────────────────────────────────────────────────────────┘
-r-bioc-edger_2.2.5-1_all.deb
+r-bioc-edger_2.2.6-1_all.deb
────────────────────────────
new debian package, version 2.0.
- size 2520492 bytes: control archive= 2292 bytes.
+ size 2349128 bytes: control archive= 2292 bytes.
778 bytes, 17 lines control
4553 bytes, 54 lines md5sums
Package: r-bioc-edger
- Version: 2.2.5-1
+ Version: 2.2.6-1
Architecture: all
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
- Installed-Size: 3764
- Depends: r-base-core (>= 2.13.0~), r-bioc-limma
+ Installed-Size: 3646
+ Depends: r-base-core (>= 2.14.0~), r-bioc-limma
Suggests: r-cran-mass
Section: gnu-r
Priority: optional
@@ -613,76 +616,76 @@ r-bioc-edger_2.2.5-1_all.deb
distribution. It is also useful for differential signal analysis with
other types of genome-scale count data.
-drwxr-xr-x root/root 0 2011-06-03 15:24 ./
-drwxr-xr-x root/root 0 2011-06-03 15:24 ./usr/
-drwxr-xr-x root/root 0 2011-06-03 15:24 ./usr/lib/
-drwxr-xr-x root/root 0 2011-06-03 15:24 ./usr/lib/R/
-drwxr-xr-x root/root 0 2011-06-03 15:24 ./usr/lib/R/site-library/
-drwxr-xr-x root/root 0 2011-06-03 15:24 ./usr/lib/R/site-library/edgeR/
-drwxr-xr-x root/root 0 2011-06-03 15:24 ./usr/lib/R/site-library/edgeR/R/
--rw-r--r-- root/root 85289 2011-06-03 15:24 ./usr/lib/R/site-library/edgeR/R/edgeR.rdb
--rw-r--r-- root/root 384 2011-06-03 15:24 ./usr/lib/R/site-library/edgeR/R/edgeR
--rw-r--r-- root/root 1927 2011-06-03 15:24 ./usr/lib/R/site-library/edgeR/R/edgeR.rdx
-drwxr-xr-x root/root 0 2011-06-03 15:24 ./usr/lib/R/site-library/edgeR/help/
--rw-r--r-- root/root 2916 2011-06-03 15:24 ./usr/lib/R/site-library/edgeR/help/AnIndex
--rw-r--r-- root/root 177092 2011-06-03 15:24 ./usr/lib/R/site-library/edgeR/help/edgeR.rdb
--rw-r--r-- root/root 1087 2011-06-03 15:24 ./usr/lib/R/site-library/edgeR/help/aliases.rds
--rw-r--r-- root/root 675 2011-06-03 15:24 ./usr/lib/R/site-library/edgeR/help/paths.rds
--rw-r--r-- root/root 1528 2011-06-03 15:24 ./usr/lib/R/site-library/edgeR/help/edgeR.rdx
--rw-r--r-- root/root 1588 2011-06-03 15:24 ./usr/lib/R/site-library/edgeR/CITATION
-drwxr-xr-x root/root 0 2011-06-03 15:24 ./usr/lib/R/site-library/edgeR/data/
--rw-r--r-- root/root 248500 2011-06-03 15:24 ./usr/lib/R/site-library/edgeR/data/NC1.txt
--rw-r--r-- root/root 19 2011-06-03 15:24 ./usr/lib/R/site-library/edgeR/data/datalist
--rw-r--r-- root/root 318545 2011-06-03 15:24 ./usr/lib/R/site-library/edgeR/data/Tu102.txt
--rw-r--r-- root/root 263571 2011-06-03 15:24 ./usr/lib/R/site-library/edgeR/data/Tu98.txt
--rw-r--r-- root/root 228426 2011-06-03 15:24 ./usr/lib/R/site-library/edgeR/data/NC2.txt
--rw-r--r-- root/root 698 2011-06-03 15:24 ./usr/lib/R/site-library/edgeR/NAMESPACE
-drwxr-xr-x root/root 0 2011-06-03 15:24 ./usr/lib/R/site-library/edgeR/html/
--rw-r--r-- root/root 18068 2011-06-03 15:24 ./usr/lib/R/site-library/edgeR/html/00Index.html
--rw-r--r-- root/root 1179 2011-06-03 15:24 ./usr/lib/R/site-library/edgeR/html/R.css
-drwxr-xr-x root/root 0 2011-06-03 15:24 ./usr/lib/R/site-library/edgeR/Meta/
--rw-r--r-- root/root 3009 2011-06-03 15:24 ./usr/lib/R/site-library/edgeR/Meta/Rd.rds
--rw-r--r-- root/root 2853 2011-06-03 15:24 ./usr/lib/R/site-library/edgeR/Meta/hsearch.rds
--rw-r--r-- root/root 405 2011-06-03 15:24 ./usr/lib/R/site-library/edgeR/Meta/nsInfo.rds
--rw-r--r-- root/root 157 2011-06-03 15:24 ./usr/lib/R/site-library/edgeR/Meta/data.rds
--rw-r--r-- root/root 1329 2011-06-03 15:24 ./usr/lib/R/site-library/edgeR/Meta/links.rds
--rw-r--r-- root/root 198 2011-06-03 15:24 ./usr/lib/R/site-library/edgeR/Meta/vignette.rds
--rw-r--r-- root/root 893 2011-06-03 15:24 ./usr/lib/R/site-library/edgeR/Meta/package.rds
--rw-r--r-- root/root 1002 2011-06-03 15:24 ./usr/lib/R/site-library/edgeR/DESCRIPTION
--rw-r--r-- root/root 5910 2011-06-03 15:24 ./usr/lib/R/site-library/edgeR/INDEX
-drwxr-xr-x root/root 0 2011-06-03 15:24 ./usr/lib/R/site-library/edgeR/doc/
--rw-r--r-- root/root 13070 2011-06-03 15:24 ./usr/lib/R/site-library/edgeR/doc/edgeR_case_study_bib.bib
--rw-r--r-- root/root 32867 2011-06-03 15:24 ./usr/lib/R/site-library/edgeR/doc/Li_RNAseq_analysis.tex
--rw-r--r-- root/root 67654 2011-06-03 15:24 ./usr/lib/R/site-library/edgeR/doc/edgeR_case_study_longSAGE-015.png
--rw-r--r-- root/root 30462 2011-06-03 15:24 ./usr/lib/R/site-library/edgeR/doc/Zhang_SAGE_analysis.tex
--rw-r--r-- root/root 78189 2011-06-03 15:24 ./usr/lib/R/site-library/edgeR/doc/edgeR_case_study_Li-017.png
--rw-r--r-- root/root 402 2011-06-03 15:24 ./usr/lib/R/site-library/edgeR/doc/index.html
--rw-r--r-- root/root 82957 2011-06-03 15:24 ./usr/lib/R/site-library/edgeR/doc/edgeR_case_study_longSAGE-30.png
--rw-r--r-- root/root 82891 2011-06-03 15:24 ./usr/lib/R/site-library/edgeR/doc/Li_tgw-disp_vs_logconc.png
--rwxr-xr-x root/root 23786 2011-06-03 15:24 ./usr/lib/R/site-library/edgeR/doc/edgeR.Rnw
--rw-r--r-- root/root 865 2011-06-03 15:24 ./usr/lib/R/site-library/edgeR/doc/edgeR.R
--rw-r--r-- root/root 62399 2011-06-03 15:24 ./usr/lib/R/site-library/edgeR/doc/edgeR_case_study_Zhang-015.png
--rw-r--r-- root/root 80845 2011-06-03 15:24 ./usr/lib/R/site-library/edgeR/doc/edgeR_case_study_longSAGE-030.png
--rw-r--r-- root/root 36160 2011-06-03 15:24 ./usr/lib/R/site-library/edgeR/doc/tHoen_tagSeq_analysis.tex
--rw-r--r-- root/root 12768 2011-06-03 15:24 ./usr/lib/R/site-library/edgeR/doc/edgeR_case_study_Tuch_MDSplot.pdf
--rw-r--r-- root/root 62247 2011-06-03 15:24 ./usr/lib/R/site-library/edgeR/doc/edgeR_case_study_Zhang-028.png
--rw-r--r-- root/root 82051 2011-06-03 15:24 ./usr/lib/R/site-library/edgeR/doc/edgeR_case_study_tHoen_tgw_disp_vs_logconc.png
--rw-r--r-- root/root 1073282 2011-06-03 15:24 ./usr/lib/R/site-library/edgeR/doc/edgeR.pdf
--rw-r--r-- root/root 112857 2011-06-03 15:24 ./usr/lib/R/site-library/edgeR/doc/edgeR_case_study_Li-032.png
--rw-r--r-- root/root 151128 2011-06-03 15:24 ./usr/lib/R/site-library/edgeR/doc/edgeR_normalization_example_marioni.png
--rw-r--r-- root/root 123312 2011-06-03 15:24 ./usr/lib/R/site-library/edgeR/doc/edgeR_case_study_Li-meanvarplot.png
--rw-r--r-- root/root 31316 2011-06-03 15:24 ./usr/lib/R/site-library/edgeR/doc/Tuch_analysis.tex
--rw-r--r-- root/root 13374 2011-06-03 15:24 ./usr/lib/R/site-library/edgeR/doc/edgeR_case_study_longSAGE_MDSplot.pdf
--rw-r--r-- root/root 13036 2011-06-03 15:24 ./usr/lib/R/site-library/edgeR/doc/edgeR_case_study_Li_MDSplot.pdf
-drwxr-xr-x root/root 0 2011-06-03 15:24 ./usr/share/
-drwxr-xr-x root/root 0 2011-06-03 15:24 ./usr/share/doc/
-drwxr-xr-x root/root 0 2011-06-03 15:24 ./usr/share/doc/r-bioc-edger/
--rw-r--r-- root/root 717 2011-06-03 15:24 ./usr/share/doc/r-bioc-edger/README.test
--rw-r--r-- root/root 1133 2011-06-03 15:24 ./usr/share/doc/r-bioc-edger/copyright
-drwxr-xr-x root/root 0 2011-06-03 15:24 ./usr/share/doc/r-bioc-edger/tests/
--rw-r--r-- root/root 2335 2011-05-06 14:09 ./usr/share/doc/r-bioc-edger/tests/edgeR-Tests.Rout.save
--rw-r--r-- root/root 894 2011-05-06 14:09 ./usr/share/doc/r-bioc-edger/tests/edgeR-Tests.R
--rw-r--r-- root/root 158 2011-06-03 15:24 ./usr/share/doc/r-bioc-edger/changelog.Debian.gz
+drwxr-xr-x root/root 0 2011-10-19 15:32 ./
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+-rw-r--r-- root/root 1942 2011-10-19 15:32 ./usr/lib/R/site-library/edgeR/R/edgeR.rdx
+drwxr-xr-x root/root 0 2011-10-19 15:32 ./usr/lib/R/site-library/edgeR/help/
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+-rw-r--r-- root/root 1089 2011-10-19 15:32 ./usr/lib/R/site-library/edgeR/help/aliases.rds
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+-rw-r--r-- root/root 1523 2011-10-19 15:32 ./usr/lib/R/site-library/edgeR/help/edgeR.rdx
+-rw-r--r-- root/root 1588 2011-10-19 15:32 ./usr/lib/R/site-library/edgeR/CITATION
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+-rw-r--r-- root/root 248500 2011-10-19 15:32 ./usr/lib/R/site-library/edgeR/data/NC1.txt
+-rw-r--r-- root/root 19 2011-10-19 15:32 ./usr/lib/R/site-library/edgeR/data/datalist
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+-rw-r--r-- root/root 698 2011-10-19 15:32 ./usr/lib/R/site-library/edgeR/NAMESPACE
+drwxr-xr-x root/root 0 2011-10-19 15:32 ./usr/lib/R/site-library/edgeR/html/
+-rw-r--r-- root/root 18063 2011-10-19 15:32 ./usr/lib/R/site-library/edgeR/html/00Index.html
+-rw-r--r-- root/root 1179 2011-10-19 15:32 ./usr/lib/R/site-library/edgeR/html/R.css
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+-rw-r--r-- root/root 891 2011-10-19 15:32 ./usr/lib/R/site-library/edgeR/Meta/package.rds
+-rw-r--r-- root/root 962 2011-10-19 15:32 ./usr/lib/R/site-library/edgeR/DESCRIPTION
+-rw-r--r-- root/root 5910 2011-10-19 15:32 ./usr/lib/R/site-library/edgeR/INDEX
+drwxr-xr-x root/root 0 2011-10-19 15:32 ./usr/lib/R/site-library/edgeR/doc/
+-rw-r--r-- root/root 13070 2011-10-19 15:32 ./usr/lib/R/site-library/edgeR/doc/edgeR_case_study_bib.bib
+-rw-r--r-- root/root 32867 2011-10-19 15:32 ./usr/lib/R/site-library/edgeR/doc/Li_RNAseq_analysis.tex
+-rw-r--r-- root/root 67654 2011-10-19 15:32 ./usr/lib/R/site-library/edgeR/doc/edgeR_case_study_longSAGE-015.png
+-rw-r--r-- root/root 30462 2011-10-19 15:32 ./usr/lib/R/site-library/edgeR/doc/Zhang_SAGE_analysis.tex
+-rw-r--r-- root/root 78189 2011-10-19 15:32 ./usr/lib/R/site-library/edgeR/doc/edgeR_case_study_Li-017.png
+-rw-r--r-- root/root 1065 2011-10-19 15:32 ./usr/lib/R/site-library/edgeR/doc/index.html
+-rw-r--r-- root/root 82957 2011-10-19 15:32 ./usr/lib/R/site-library/edgeR/doc/edgeR_case_study_longSAGE-30.png
+-rw-r--r-- root/root 82891 2011-10-19 15:32 ./usr/lib/R/site-library/edgeR/doc/Li_tgw-disp_vs_logconc.png
+-rwxr-xr-x root/root 23786 2011-10-19 15:32 ./usr/lib/R/site-library/edgeR/doc/edgeR.Rnw
+-rw-r--r-- root/root 859 2011-10-19 15:32 ./usr/lib/R/site-library/edgeR/doc/edgeR.R
+-rw-r--r-- root/root 62399 2011-10-19 15:32 ./usr/lib/R/site-library/edgeR/doc/edgeR_case_study_Zhang-015.png
+-rw-r--r-- root/root 80845 2011-10-19 15:32 ./usr/lib/R/site-library/edgeR/doc/edgeR_case_study_longSAGE-030.png
+-rw-r--r-- root/root 36160 2011-10-19 15:32 ./usr/lib/R/site-library/edgeR/doc/tHoen_tagSeq_analysis.tex
+-rw-r--r-- root/root 12768 2011-10-19 15:32 ./usr/lib/R/site-library/edgeR/doc/edgeR_case_study_Tuch_MDSplot.pdf
+-rw-r--r-- root/root 62247 2011-10-19 15:32 ./usr/lib/R/site-library/edgeR/doc/edgeR_case_study_Zhang-028.png
+-rw-r--r-- root/root 82051 2011-10-19 15:32 ./usr/lib/R/site-library/edgeR/doc/edgeR_case_study_tHoen_tgw_disp_vs_logconc.png
+-rw-r--r-- root/root 1073276 2011-10-19 15:32 ./usr/lib/R/site-library/edgeR/doc/edgeR.pdf
+-rw-r--r-- root/root 112857 2011-10-19 15:32 ./usr/lib/R/site-library/edgeR/doc/edgeR_case_study_Li-032.png
+-rw-r--r-- root/root 151128 2011-10-19 15:32 ./usr/lib/R/site-library/edgeR/doc/edgeR_normalization_example_marioni.png
+-rw-r--r-- root/root 123312 2011-10-19 15:32 ./usr/lib/R/site-library/edgeR/doc/edgeR_case_study_Li-meanvarplot.png
+-rw-r--r-- root/root 31316 2011-10-19 15:32 ./usr/lib/R/site-library/edgeR/doc/Tuch_analysis.tex
+-rw-r--r-- root/root 13374 2011-10-19 15:32 ./usr/lib/R/site-library/edgeR/doc/edgeR_case_study_longSAGE_MDSplot.pdf
+-rw-r--r-- root/root 13036 2011-10-19 15:32 ./usr/lib/R/site-library/edgeR/doc/edgeR_case_study_Li_MDSplot.pdf
+drwxr-xr-x root/root 0 2011-10-19 15:32 ./usr/share/
+drwxr-xr-x root/root 0 2011-10-19 15:32 ./usr/share/doc/
+drwxr-xr-x root/root 0 2011-10-19 15:32 ./usr/share/doc/r-bioc-edger/
+-rw-r--r-- root/root 717 2011-10-19 15:32 ./usr/share/doc/r-bioc-edger/README.test
+-rw-r--r-- root/root 1133 2011-10-19 15:32 ./usr/share/doc/r-bioc-edger/copyright
+drwxr-xr-x root/root 0 2011-10-19 15:32 ./usr/share/doc/r-bioc-edger/tests/
+-rw-r--r-- root/root 2335 2011-10-14 02:18 ./usr/share/doc/r-bioc-edger/tests/edgeR-Tests.Rout.save
+-rw-r--r-- root/root 894 2011-10-14 02:18 ./usr/share/doc/r-bioc-edger/tests/edgeR-Tests.R
+-rw-r--r-- root/root 243 2011-10-19 15:32 ./usr/share/doc/r-bioc-edger/changelog.Debian.gz
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -690,11 +693,33 @@ drwxr-xr-x root/root 0 2011-06-03 15:24 ./usr/share/doc/r-bioc-edger/tes
└──────────────────────────────────────────────────────────────────────────────┘
+lintian
+───────
+
+I: r-bioc-edger source: missing-debian-source-format
+P: r-bioc-edger source: unversioned-copyright-format-uri http://dep.debian.net/deps/dep5/
+P: r-bioc-edger: no-upstream-changelog
+W: r-bioc-edger: copyright-without-copyright-notice
+W: r-bioc-edger: image-file-in-usr-lib usr/lib/R/site-library/edgeR/doc/Li_tgw-disp_vs_logconc.png
+W: r-bioc-edger: image-file-in-usr-lib usr/lib/R/site-library/edgeR/doc/edgeR_case_study_Li-017.png
+W: r-bioc-edger: image-file-in-usr-lib usr/lib/R/site-library/edgeR/doc/edgeR_case_study_Li-032.png
+W: r-bioc-edger: image-file-in-usr-lib usr/lib/R/site-library/edgeR/doc/edgeR_case_study_Li-meanvarplot.png
+W: r-bioc-edger: image-file-in-usr-lib usr/lib/R/site-library/edgeR/doc/edgeR_case_study_Zhang-015.png
+W: r-bioc-edger: image-file-in-usr-lib usr/lib/R/site-library/edgeR/doc/edgeR_case_study_Zhang-028.png
+W: r-bioc-edger: image-file-in-usr-lib usr/lib/R/site-library/edgeR/doc/edgeR_case_study_longSAGE-015.png
+W: r-bioc-edger: image-file-in-usr-lib usr/lib/R/site-library/edgeR/doc/edgeR_case_study_longSAGE-030.png
+W: r-bioc-edger: image-file-in-usr-lib usr/lib/R/site-library/edgeR/doc/edgeR_case_study_longSAGE-30.png
+W: r-bioc-edger: image-file-in-usr-lib usr/lib/R/site-library/edgeR/doc/edgeR_case_study_tHoen_tgw_disp_vs_logconc.png
+W: r-bioc-edger: image-file-in-usr-lib usr/lib/R/site-library/edgeR/doc/edgeR_normalization_example_marioni.png
+W: r-bioc-edger: executable-not-elf-or-script usr/lib/R/site-library/edgeR/doc/edgeR.Rnw
+
+I: Lintian run was successful.
+
┌──────────────────────────────────────────────────────────────────────────────┐
│ Cleanup │
└──────────────────────────────────────────────────────────────────────────────┘
-Purging /«CHROOT»/«BUILDDIR»
+Purging /«BUILDDIR»
Reading package lists...
Building dependency tree...
Reading state information...
@@ -703,31 +728,26 @@ Reading package lists...
Building dependency tree...
Reading state information...
The following packages will be REMOVED:
- bsdmainutils* cdbs* debhelper* dpatch* file* fontconfig* fontconfig-config*
- gettext* gettext-base* gfortran* gfortran-4.6* groff-base* html2text*
+ cdbs* debhelper* dpatch* file* fontconfig* fontconfig-config* gettext*
+ gettext-base* gfortran* gfortran-4.6* groff-base* html2text*
intltool-debian* libblas-dev* libblas3gf* libbz2-dev* libcairo2* libcroco3*
libdatrie1* libexpat1* libfontconfig1* libfreetype6* libgfortran3*
- libglib2.0-0* libice6* libjpeg62* libjpeg62-dev* liblapack-dev*
- liblapack3gf* libmagic1* libncurses5-dev* libpango1.0-0* libpaper-utils*
- libpaper1* libpcre3* libpcre3-dev* libpcrecpp0* libpipeline1* libpixman-1-0*
- libpng12-0* libpng12-dev* libreadline-dev* libreadline6-dev* libsm6*
- libthai-data* libthai0* libtiff4* libunistring0* libx11-6* libx11-data*
+ libglib2.0-0* libice6* libjpeg8* libjpeg8-dev* liblapack-dev* liblapack3gf*
+ libmagic1* libncurses5-dev* libpango1.0-0* libpaper-utils* libpaper1*
+ libpcre3* libpcre3-dev* libpcrecpp0* libpipeline1* libpixman-1-0*
+ libpng12-dev* libreadline-dev* libreadline6-dev* libsm6* libthai-data*
+ libthai0* libtiff4* libtinfo-dev* libunistring0* libx11-6* libx11-data*
libxau6* libxcb-render0* libxcb-shm0* libxcb1* libxdmcp6* libxext6* libxft2*
libxml2* libxrender1* libxss1* libxt6* man-db* po-debconf* r-base-core*
- r-base-dev* r-bioc-limma* sbuild-build-depends-core-dummy*
- sbuild-build-depends-r-bioc-edger-dummy* tcl8.5* tk8.5* ttf-dejavu-core*
- ucf* unzip* x11-common* xdg-utils* zip* zlib1g-dev*
-0 upgraded, 0 newly installed, 78 to remove and 0 not upgraded.
-After this operation, 131 MB disk space will be freed.
-(Reading database ... 14782 files and directories currently installed.)
+ r-base-dev* r-bioc-limma* sbuild-build-depends-r-bioc-edger-dummy* tcl8.5*
+ tk8.5* ttf-dejavu-core* ucf* unzip* x11-common* xdg-utils* zip* zlib1g-dev*
+0 upgraded, 0 newly installed, 76 to remove and 0 not upgraded.
+After this operation, 130 MB disk space will be freed.
+(Reading database ... 14801 files and directories currently installed.)
Removing sbuild-build-depends-r-bioc-edger-dummy ...
Removing r-base-dev ...
Removing cdbs ...
Removing debhelper ...
-Removing man-db ...
-Purging configuration files for man-db ...
-Removing bsdmainutils ...
-Purging configuration files for bsdmainutils ...
Removing dpatch ...
Purging configuration files for dpatch ...
Removing file ...
@@ -754,6 +774,8 @@ Removing gettext ...
Removing gettext-base ...
Removing gfortran ...
Removing gfortran-4.6 ...
+Removing man-db ...
+Purging configuration files for man-db ...
Removing groff-base ...
Purging configuration files for groff-base ...
Removing html2text ...
@@ -787,12 +809,10 @@ Removing libice6 ...
Purging configuration files for libice6 ...
Removing libtiff4 ...
Purging configuration files for libtiff4 ...
-Removing libjpeg62-dev ...
-Removing libjpeg62 ...
+Removing libjpeg8-dev ...
+Removing libjpeg8 ...
Removing libmagic1 ...
Purging configuration files for libmagic1 ...
-Removing libreadline-dev ...
-Removing libreadline6-dev ...
Removing libncurses5-dev ...
Removing libpaper-utils ...
Removing libpaper1 ...
@@ -807,9 +827,10 @@ Purging configuration files for libpipeline1 ...
Removing libpixman-1-0 ...
Purging configuration files for libpixman-1-0 ...
Removing libpng12-dev ...
-Removing libpng12-0 ...
-Purging configuration files for libpng12-0 ...
+Removing libreadline-dev ...
+Removing libreadline6-dev ...
Removing libthai-data ...
+Removing libtinfo-dev ...
Removing libunistring0 ...
Purging configuration files for libunistring0 ...
Removing libxss1 ...
@@ -833,7 +854,6 @@ Removing libxdmcp6 ...
Purging configuration files for libxdmcp6 ...
Removing libxml2 ...
Purging configuration files for libxml2 ...
-Removing sbuild-build-depends-core-dummy ...
Removing tcl8.5 ...
Purging configuration files for tcl8.5 ...
Removing ttf-dejavu-core ...
@@ -854,17 +874,18 @@ Removing zlib1g-dev ...
└──────────────────────────────────────────────────────────────────────────────┘
Architecture: amd64
-Build-Space: 12456
+Build-Space: 12312
Build-Time: 9
Distribution: unstable
-Install-Time: 90
-Job: r-bioc-edger_2.2.5-1.dsc
+Install-Time: 84
+Job: r-bioc-edger_2.2.6-1.dsc
+Lintian: pass
Package: r-bioc-edger
-Package-Time: 101
-Source-Version: 2.2.5-1
-Space: 12456
+Package-Time: 98
+Source-Version: 2.2.6-1
+Space: 12312
Status: successful
-Version: 2.2.5-1
+Version: 2.2.6-1
────────────────────────────────────────────────────────────────────────────────
-Finished at 20110603-1524
-Build needed 00:01:41, 12456k disc space
+Finished at 20111019-1532
+Build needed 00:01:38, 12312k disc space
diff --git a/dsc b/dsc
index 5e80706..e79b5aa 100644
--- a/dsc
+++ b/dsc
@@ -5,7 +5,7 @@ Format: 1.0
Source: r-bioc-edger
Binary: r-bioc-edger
Architecture: all
-Version: 2.2.5-1
+Version: 2.2.6-1
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
Uploaders: Charles Plessy <plessy at debian.org>
Dm-Upload-Allowed: yes
@@ -14,30 +14,32 @@ Standards-Version: 3.9.2
Vcs-Browser: http://anonscm.debian.org/gitweb/?p=debian-med/r-bioc-edger.git
Vcs-Git: git://anonscm.debian.org/debian-med/r-bioc-edger.git
Build-Depends: debhelper (>= 8), cdbs, r-base-dev (>= 2.10.0), r-bioc-limma
+Package-List:
+ r-bioc-edger deb gnu-r optional
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- 4eadf4ec5f185a2e88fe63fa57aa8df327625842 2388 r-bioc-edger_2.2.5-1.diff.gz
+ 7066d9eb7c7e2a20e160639b661c2571e5d63710 2320529 r-bioc-edger_2.2.6.orig.tar.gz
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- ad40ac6d75dc1234772bef48ee99cdddb2155998f3a1235885c5df9fc034442e 2388 r-bioc-edger_2.2.5-1.diff.gz
+ fdd7ca78c817e7d0d0e5d41ab2382bfb1021fb7a59bf4693d7b05d989e5685cd 2320529 r-bioc-edger_2.2.6.orig.tar.gz
+ 19956af815df84626848da3420d372db67b282c95c8f3b4f1381f634e46f327d 2443 r-bioc-edger_2.2.6-1.diff.gz
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- 659a9927bcdb0a66ea1423a15db7b228 2388 r-bioc-edger_2.2.5-1.diff.gz
+ 75de42f2f81018a70330bf129fcabfb0 2320529 r-bioc-edger_2.2.6.orig.tar.gz
+ fc190d545c8067c22341b7f7dd5f38d8 2443 r-bioc-edger_2.2.6-1.diff.gz
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--
empirical analysis of digital gene expression data in R
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