[med-svn] r8312 - trunk/packages/micromanager/trunk/debian
Mathieu Malaterre
malat-guest at alioth.debian.org
Thu Oct 27 13:37:34 UTC 2011
Author: malat-guest
Date: 2011-10-27 13:37:34 +0000 (Thu, 27 Oct 2011)
New Revision: 8312
Modified:
trunk/packages/micromanager/trunk/debian/control
trunk/packages/micromanager/trunk/debian/copyright
trunk/packages/micromanager/trunk/debian/rules
Log:
split package
Modified: trunk/packages/micromanager/trunk/debian/control
===================================================================
--- trunk/packages/micromanager/trunk/debian/control 2011-10-27 12:56:40 UTC (rev 8311)
+++ trunk/packages/micromanager/trunk/debian/control 2011-10-27 13:37:34 UTC (rev 8312)
@@ -1,6 +1,6 @@
Source: micromanager
Priority: optional
-Section: java
+Section: science
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
DM-Upload-Allowed: yes
Uploaders: Mathieu Malaterre <mathieu.malaterre at gmail.com>
@@ -17,12 +17,67 @@
Vcs-Browser: http://anonscm.debian.org/viewvc/debian-med/trunk/packages/micromanager/trunk/
Vcs-Svn: svn://svn.debian.org/debian-med/trunk/packages/micromanager/trunk/
+Package: micromanager-imagej
+Architecture: all
+Depends: ${java:Depends}, ${misc:Depends}, ${shlibs:Depends}
+Recommends: ${java:Recommends}
+Description: ImageJ User interface for Microscopy Software
+ µManager is a software package for control of automated microscopes. It lets
+ you execute common microscope image acquisition strategies such as time-lapses,
+ multi-channel imaging, z-stacks, and combinations thereof. μManager works with
+ microscopes from all four major manufacturers (Leica, Nikon, Olympus and
+ Zeiss), most scientific-grade cameras and many peripherals (stages, filter
+ wheels, shutters, etc.) used in microscope imaging (check the list of supported
+ hardware). Since μManager runs as a plugin to ImageJ, image analysis routines
+ are available within the application.
+ .
+ Unencumbered code provides a GUI for microscope image acquisition, a hardware
+ interface layer and hardware interfacing for:
+ - ASI stages, filter wheels and shutters
+ - Arduino
+ - Conix filter changer
+ - Velleman K8055 and K8061 digital IO boards
+ - Leica DMI microscopes
+ - Ludl shutters, stages and filter Wheels
+ - Nikon TE2000 microscope
+ - Physik Instrumente stages
+ - Pecon stage incubators
+ - Prior shutters, stages and filter wheels
+ - Spectral LMM5 laser controller
+ - Sutter shutters, filter wheels and DG4
+ - Vincent Uniblitz shutters
+ - Yokogawa spinning disk confocal CSU22 and CSUX
+ - Zeiss microscopes (two 'generations')
+ - iidc1394 compatible cameras (through libdc1394)
Package: micromanager
Architecture: any
-Depends: ${java:Depends}, ${misc:Depends}, ${shlibs:Depends}
-Recommends: ${java:Recommends}
-Description: Java Advanced Imaging API reference implementation
- This project contains the source code for the core Java Advanced Imaging API
- reference implementation containing the packages javax.media.jai.* and
- com.sun.media.jai.*.
+Depends: ${misc:Depends}, ${shlibs:Depends}
+Description: Microscopy Software
+ µManager is a software package for control of automated microscopes. It lets
+ you execute common microscope image acquisition strategies such as time-lapses,
+ multi-channel imaging, z-stacks, and combinations thereof. μManager works with
+ microscopes from all four major manufacturers (Leica, Nikon, Olympus and
+ Zeiss), most scientific-grade cameras and many peripherals (stages, filter
+ wheels, shutters, etc.) used in microscope imaging (check the list of supported
+ hardware). Since μManager runs as a plugin to ImageJ, image analysis routines
+ are available within the application.
+ .
+ Unencumbered code provides a GUI for microscope image acquisition, a hardware
+ interface layer and hardware interfacing for:
+ - ASI stages, filter wheels and shutters
+ - Arduino
+ - Conix filter changer
+ - Velleman K8055 and K8061 digital IO boards
+ - Leica DMI microscopes
+ - Ludl shutters, stages and filter Wheels
+ - Nikon TE2000 microscope
+ - Physik Instrumente stages
+ - Pecon stage incubators
+ - Prior shutters, stages and filter wheels
+ - Spectral LMM5 laser controller
+ - Sutter shutters, filter wheels and DG4
+ - Vincent Uniblitz shutters
+ - Yokogawa spinning disk confocal CSU22 and CSUX
+ - Zeiss microscopes (two 'generations')
+ - iidc1394 compatible cameras (through libdc1394)
Modified: trunk/packages/micromanager/trunk/debian/copyright
===================================================================
--- trunk/packages/micromanager/trunk/debian/copyright 2011-10-27 12:56:40 UTC (rev 8311)
+++ trunk/packages/micromanager/trunk/debian/copyright 2011-10-27 13:37:34 UTC (rev 8312)
@@ -1,351 +1,11 @@
Format: http://dep.debian.net/deps/dep5/
-Upstream-Name: Jai-core
-Source: http://java.net/projects/jai-core
+Upstream-Name: µManager
+Source: http://valelab.ucsf.edu/~MM/MMwiki/index.php/Micro-Manager
Files: *
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Files: debian/*
Copyright: © 2011 Mathieu Malaterre <mathieu.malaterre at gmail.com>
License: PD
Modified: trunk/packages/micromanager/trunk/debian/rules
===================================================================
--- trunk/packages/micromanager/trunk/debian/rules 2011-10-27 12:56:40 UTC (rev 8311)
+++ trunk/packages/micromanager/trunk/debian/rules 2011-10-27 13:37:34 UTC (rev 8312)
@@ -3,6 +3,9 @@
JAVA_HOME=/usr/lib/jvm/default-java
+pkg_mm = micromanager
+pkg_ij = micromanager-imagej
+
%:
dh $@ --with javahelper --with autotools_dev
@@ -13,11 +16,16 @@
#./configure --with-imagej=/usr/share/java/ij.jar
# TODO: --enable-python
+override_dh_install:
+ # default micro-manager app
+ dh_install -p$(pkg_mm) usr/lib/micro-manager
+ dh_install -p$(pkg_mm) --autodest usr/share/java/MMCoreJ.jar
+ # imagej plugin
+ dh_install -p$(pkg_ij) usr/share/imagej
+
override_dh_clean:
dh_clean
- #
rm -f install-sh
- #rm -f aclocal.m4
rm -f config.sub
rm -f missing
rm -f config.guess
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