[med-svn] r8334 - trunk/packages/transtermhp/trunk/debian

[Andreas Tille]

Author: tille
Date: 2011-10-28 08:52:06 +0000 (Fri, 28 Oct 2011)
New Revision: 8334

Modified:
   trunk/packages/transtermhp/trunk/debian/changelog
   trunk/packages/transtermhp/trunk/debian/compat
   trunk/packages/transtermhp/trunk/debian/control
Log:
Uploaded new upstream version prepared by Alexander Mestiashvili; some packaging updates; removed citations from long description because it is in upstream-metadata.yaml


Modified: trunk/packages/transtermhp/trunk/debian/changelog
===================================================================
--- trunk/packages/transtermhp/trunk/debian/changelog	2011-10-28 08:41:25 UTC (rev 8333)
+++ trunk/packages/transtermhp/trunk/debian/changelog	2011-10-28 08:52:06 UTC (rev 8334)
@@ -1,9 +1,17 @@
 transtermhp (2.09-1) unstable; urgency=low
 
+  [ Alex Mestiashvili ]
   * New upstream release. 
 
- -- Alex Mestiashvili <alex at biotec.tu-dresden.de>  Tue, 01 Mar 2011 12:24:47 +0000
+  [ Andreas Tille ]
+  * Standards-Version: 3.9.2 (no changes needed)
+  * Debhelper 8 (compat+control)
+  * Fixed Vcs fields
+  * Stripped citation from long descriptions because it can be found in
+    debian/upstream-metadata.yaml
 
+ -- Andreas Tille <tille at debian.org>  Fri, 28 Oct 2011 10:44:24 +0200
+
 transtermhp (2.07-1) unstable; urgency=low
 
   * Initial release (Closes: #614382)

Modified: trunk/packages/transtermhp/trunk/debian/compat
===================================================================
--- trunk/packages/transtermhp/trunk/debian/compat	2011-10-28 08:41:25 UTC (rev 8333)
+++ trunk/packages/transtermhp/trunk/debian/compat	2011-10-28 08:52:06 UTC (rev 8334)
@@ -1 +1 @@
-7
+8

Modified: trunk/packages/transtermhp/trunk/debian/control
===================================================================
--- trunk/packages/transtermhp/trunk/debian/control	2011-10-28 08:41:25 UTC (rev 8333)
+++ trunk/packages/transtermhp/trunk/debian/control	2011-10-28 08:52:06 UTC (rev 8334)
@@ -3,12 +3,13 @@
 Priority: optional
 Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
 DM-Upload-Allowed: yes
-Uploaders: Alex Mestiashvili <alex at biotec.tu-dresden.de>
-Build-Depends: debhelper (>= 7.0.50~), quilt (>= 0.47)
-Standards-Version: 3.9.1
+Uploaders: Alex Mestiashvili <alex at biotec.tu-dresden.de>,
+ Andreas Tille <tille at debian.org>
+Build-Depends: debhelper (>= 8), quilt (>= 0.47)
+Standards-Version: 3.9.2
 Homepage: http://transterm.cbcb.umd.edu/
-Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/transtermhp/trunk/?rev=0&sc=0
-Vcs-Svn: svn://svn.debian.org/svn/debian-med/trunk/packages/transtermhp/trunk/
+Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/transtermhp/trunk/
+Vcs-Svn: svn://svn.debian.org/debian-med/trunk/packages/transtermhp/trunk/
 
 Package: transtermhp
 Architecture: any
@@ -17,16 +18,5 @@
  TransTermHP finds rho-independent transcription terminators in
  bacterial genomes. Each terminator found by the program is assigned a
  confidence value that estimates its probability of being a true
- terminator. TransTermHP is described in:
- .
- C. Kingsford, K. Ayanbule and S.L. Salzberg. Rapid, accurate,
- computational discovery of Rho-independent transcription terminators
- illuminates their relationship to DNA uptake. Genome Biology 8:R22
- (2007). 
- .
- A predecessor system, TransTerm, that used very different search and
- scoring algorithms is described in:
- .
- Maria D. Ermolaeva, Hanif G. Khalak, Owen White, Hamilton O. Smith and
- Steven L. Salzberg. Prediction of Transcription Terminators in Bacterial
- Genomes. J Mol Biol 301, (1), 27-33 (2000)
+ terminator. TransTermHP is the successor of TransTerm which was using
+ very different search and scoring algorithms.