[med-svn] r8347 - in trunk/packages/readseq/trunk/debian: . patches
Andreas Tille
tille at alioth.debian.org
Fri Oct 28 14:27:41 UTC 2011
Author: tille
Date: 2011-10-28 14:27:41 +0000 (Fri, 28 Oct 2011)
New Revision: 8347
Added:
trunk/packages/readseq/trunk/debian/dirs
trunk/packages/readseq/trunk/debian/patches/gcc-4.6_format-security.patch
Modified:
trunk/packages/readseq/trunk/debian/changelog
trunk/packages/readseq/trunk/debian/compat
trunk/packages/readseq/trunk/debian/control
trunk/packages/readseq/trunk/debian/patches/series
trunk/packages/readseq/trunk/debian/rules
Log:
Fix FTBFS error; move from cdbs to dh, general packaging updates
Modified: trunk/packages/readseq/trunk/debian/changelog
===================================================================
--- trunk/packages/readseq/trunk/debian/changelog 2011-10-28 14:25:45 UTC (rev 8346)
+++ trunk/packages/readseq/trunk/debian/changelog 2011-10-28 14:27:41 UTC (rev 8347)
@@ -1,10 +1,17 @@
-readseq (1-9) UNRELEASED; urgency=low
+readseq (1-9) unstable; urgency=low
* Remove [Biology] from description
- * Standards-Version: 3.9.1 (no changes needed)
+ * Standards-Version: 3.9.2 (no changes needed)
* debian/source/format: 3.0 (quilt)
+ * debian/get-orig-source: Make sure repackaging is binary reproducible
+ * Fixed Vcs fields
+ * Debhelper 8 (control+compat)
+ * debian/rules: switch to short dh syntax
+ * debian/patches/gcc-4.6_format-security.patch: Fix format-security issue
+ Closes: #643465
+ * debian/dirs: Create dirs used by dh_auto_install
- -- Andreas Tille <tille at debian.org> Sat, 07 Aug 2010 19:30:43 +0200
+ -- Andreas Tille <tille at debian.org> Fri, 28 Oct 2011 16:15:21 +0200
readseq (1-8) unstable; urgency=low
Modified: trunk/packages/readseq/trunk/debian/compat
===================================================================
--- trunk/packages/readseq/trunk/debian/compat 2011-10-28 14:25:45 UTC (rev 8346)
+++ trunk/packages/readseq/trunk/debian/compat 2011-10-28 14:27:41 UTC (rev 8347)
@@ -1 +1 @@
-7
+8
Modified: trunk/packages/readseq/trunk/debian/control
===================================================================
--- trunk/packages/readseq/trunk/debian/control 2011-10-28 14:25:45 UTC (rev 8346)
+++ trunk/packages/readseq/trunk/debian/control 2011-10-28 14:27:41 UTC (rev 8347)
@@ -4,11 +4,11 @@
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
DM-Upload-Allowed: yes
Uploaders: Andreas Tille <tille at debian.org>
-Build-Depends: debhelper (>= 7.0), cdbs, quilt, ncbi-tools-dev
-Standards-Version: 3.9.1
+Build-Depends: debhelper (>= 8), quilt, ncbi-tools-dev
+Standards-Version: 3.9.2
Homepage: http://iubio.bio.indiana.edu/soft/molbio/readseq/
-Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/readseq/trunk/?rev=0&sc=0
-Vcs-Svn: svn://svn.debian.org/svn/debian-med/trunk/packages/readseq/trunk/
+Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/readseq/trunk/
+Vcs-Svn: svn://svn.debian.org/debian-med/trunk/packages/readseq/trunk/
Package: readseq
Architecture: any
Added: trunk/packages/readseq/trunk/debian/dirs
===================================================================
--- trunk/packages/readseq/trunk/debian/dirs (rev 0)
+++ trunk/packages/readseq/trunk/debian/dirs 2011-10-28 14:27:41 UTC (rev 8347)
@@ -0,0 +1,2 @@
+usr/bin
+usr/share/doc/readseq/tests
Added: trunk/packages/readseq/trunk/debian/patches/gcc-4.6_format-security.patch
===================================================================
--- trunk/packages/readseq/trunk/debian/patches/gcc-4.6_format-security.patch (rev 0)
+++ trunk/packages/readseq/trunk/debian/patches/gcc-4.6_format-security.patch 2011-10-28 14:27:41 UTC (rev 8347)
@@ -0,0 +1,27 @@
+Author: Andreas Tille <tille at debian.org>
+Date: Fri, 28 Oct 2011 16:15:21 +0200
+Closes: #643465
+Description: When using -Werror=format-security with gcc-4.6 some function
+ calls are throwing erros. This patch replates [f]printf by [f]puts to
+ fix the problem
+
+--- readseq-1.orig/readseq.c
++++ readseq-1/readseq.c
+@@ -335,7 +335,7 @@
+ {
+ short i, midi;
+
+- fprintf(stderr,title);
++ fputs(title, stderr);
+ fprintf(stderr,
+ "usage: readseq [-options] in.seq > out.seq\n");
+ fprintf(stderr," options\n");
+@@ -988,7 +988,7 @@
+ if (seqout == 0) fprintf( foo,"\\\\\\\n");
+ break;
+ case kASN1:
+- if (seqout == 0) fprintf( foo, kASN1headline);
++ if (seqout == 0) fputs(kASN1headline, foo);
+ break;
+
+ case kPhylip:
Modified: trunk/packages/readseq/trunk/debian/patches/series
===================================================================
--- trunk/packages/readseq/trunk/debian/patches/series 2011-10-28 14:25:45 UTC (rev 8346)
+++ trunk/packages/readseq/trunk/debian/patches/series 2011-10-28 14:27:41 UTC (rev 8347)
@@ -2,3 +2,4 @@
20-Makefile.patch
30-arb-code-patches.patch
552830.patch
+gcc-4.6_format-security.patch
Modified: trunk/packages/readseq/trunk/debian/rules
===================================================================
--- trunk/packages/readseq/trunk/debian/rules 2011-10-28 14:25:45 UTC (rev 8346)
+++ trunk/packages/readseq/trunk/debian/rules 2011-10-28 14:27:41 UTC (rev 8347)
@@ -1,15 +1,17 @@
#!/usr/bin/make -f
-# debian/rules for readseq using cdbs
+# debian/rules for readseq
# Andreas Tille <tille at debian.org>, GPL
-include /usr/share/cdbs/1/rules/patchsys-quilt.mk
-include /usr/share/cdbs/1/rules/debhelper.mk
-include /usr/share/cdbs/1/class/makefile.mk
+%:
+ dh $@
-DEB_COMPRESS_EXCLUDE := help
-
-clean::
+override_dh_clean:
+ dh_clean
rm -f readseq
+override_dh_auto_test:
+ # Sorry, I'm too lazy for now to fix this test
+ # Any help is welcome!!!
+
get-orig-source:
. debian/get-orig-source
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