[med-svn] r7807 - in trunk/packages/seqan/trunk/debian: . patches

[Charles Plessy]

Author: plessy
Date: 2011-09-15 04:57:05 +0000 (Thu, 15 Sep 2011)
New Revision: 7807

Added:
   trunk/packages/seqan/trunk/debian/patches/
   trunk/packages/seqan/trunk/debian/patches/samtools.patch
   trunk/packages/seqan/trunk/debian/patches/series
Log:
Patch to correct path to SAMtools headers in Debian.


Added: trunk/packages/seqan/trunk/debian/patches/samtools.patch
===================================================================
--- trunk/packages/seqan/trunk/debian/patches/samtools.patch	                        (rev 0)
+++ trunk/packages/seqan/trunk/debian/patches/samtools.patch	2011-09-15 04:57:05 UTC (rev 7807)
@@ -0,0 +1,20 @@
+Description: Corrects path to SAMtools headers in Debian.
+Origin: vendor
+Forwarded: no
+ Not checked yet it if it still relevant for next upstream release.
+
+diff --git a/seqan/store.h b/seqan/store.h
+index b558e94..de54ace 100644
+--- a/seqan/store.h
++++ b/seqan/store.h
+@@ -47,8 +47,8 @@
+ #endif  // #ifndef SEQAN_HAS_SAMTOOLS 
+ 
+ #if SEQAN_HAS_SAMTOOLS
+-#include <sam.h>
+-#include <bam.h>
++#include <samtools/sam.h>
++#include <samtools/bam.h>
+ #endif  // #if SEQAN_HAS_SAMTOOLS
+ 
+ //////////////////////////////////////////////////////////////////////////////

Added: trunk/packages/seqan/trunk/debian/patches/series
===================================================================
--- trunk/packages/seqan/trunk/debian/patches/series	                        (rev 0)
+++ trunk/packages/seqan/trunk/debian/patches/series	2011-09-15 04:57:05 UTC (rev 7807)
@@ -0,0 +1 @@
+samtools.patch