[med-svn] r7814 - in trunk/packages/eigensoft/trunk/debian: . patches

[Steffen Möller]

Author: moeller
Date: 2011-09-15 13:47:55 +0000 (Thu, 15 Sep 2011)
New Revision: 7814

Added:
   trunk/packages/eigensoft/trunk/debian/patches/perlPath.patch
Modified:
   trunk/packages/eigensoft/trunk/debian/changelog
   trunk/packages/eigensoft/trunk/debian/control
   trunk/packages/eigensoft/trunk/debian/patches/series
   trunk/packages/eigensoft/trunk/debian/rules
Log:
Perl path fixes, version update.


Modified: trunk/packages/eigensoft/trunk/debian/changelog
===================================================================
--- trunk/packages/eigensoft/trunk/debian/changelog	2011-09-15 12:34:41 UTC (rev 7813)
+++ trunk/packages/eigensoft/trunk/debian/changelog	2011-09-15 13:47:55 UTC (rev 7814)
@@ -6,6 +6,6 @@
 
 eigensoft (3.0-1) UNRELEASED; urgency=low
 
-  * Initial release (Closes: #nnnn).
+  * Initial release (Closes: #641724).
 
  -- Steffen Moeller <moeller at debian.org>  Wed, 14 Sep 2011 10:35:55 +0200

Modified: trunk/packages/eigensoft/trunk/debian/control
===================================================================
--- trunk/packages/eigensoft/trunk/debian/control	2011-09-15 12:34:41 UTC (rev 7813)
+++ trunk/packages/eigensoft/trunk/debian/control	2011-09-15 13:47:55 UTC (rev 7814)
@@ -27,6 +27,7 @@
 
 Package: eigensoft-dbg
 Architecture: any
+Section: non-free/debug
 Depends: ${misc:Depends}
 Description: debug symbols for the eigensoft package
  This package should be installed prior to reporting reproducible

Added: trunk/packages/eigensoft/trunk/debian/patches/perlPath.patch
===================================================================
--- trunk/packages/eigensoft/trunk/debian/patches/perlPath.patch	                        (rev 0)
+++ trunk/packages/eigensoft/trunk/debian/patches/perlPath.patch	2011-09-15 13:47:55 UTC (rev 7814)
@@ -0,0 +1,20 @@
+Index: EIG4.2/bin/fixgreen
+===================================================================
+--- EIG4.2.orig/bin/fixgreen	2011-08-30 19:50:31.000000000 +0200
++++ EIG4.2/bin/fixgreen	2011-09-15 14:56:30.965757769 +0200
+@@ -1,4 +1,4 @@
+-#!/usr/local/bin/perl  -w 
++#!/usr/bin/perl  -w
+ 
+ ## a better green color for gnuplot (dark green)
+ ## and yellow
+Index: EIG4.2/bin/ploteig
+===================================================================
+--- EIG4.2.orig/bin/ploteig	2011-08-30 19:50:31.000000000 +0200
++++ EIG4.2/bin/ploteig	2011-09-15 14:56:35.277779144 +0200
+@@ -1,4 +1,4 @@
+-#!/usr/local/bin/perl  -w 
++#!/usr/bin/perl  -w
+ 
+ ### ploteig -i eigfile -p pops -c a:b [-t title] [-s stem] [-o outfile] [-x] [-k]  [-y] [-z sep] [-f fixgreen]
+ use Getopt::Std ;

Modified: trunk/packages/eigensoft/trunk/debian/patches/series
===================================================================
--- trunk/packages/eigensoft/trunk/debian/patches/series	2011-09-15 12:34:41 UTC (rev 7813)
+++ trunk/packages/eigensoft/trunk/debian/patches/series	2011-09-15 13:47:55 UTC (rev 7814)
@@ -1,3 +1,4 @@
 #g772gfortran.patch
 #atlasLinkNotNeeded.patch
 #optimizingBlasDependencies.patch
+perlPath.patch

Modified: trunk/packages/eigensoft/trunk/debian/rules
===================================================================
--- trunk/packages/eigensoft/trunk/debian/rules	2011-09-15 12:34:41 UTC (rev 7813)
+++ trunk/packages/eigensoft/trunk/debian/rules	2011-09-15 13:47:55 UTC (rev 7814)
@@ -29,10 +29,10 @@
 	rm -rf ../EIG$(VERSION)
 	cd .. && tar xzf eig$(VERSION).tar.gz
 	cd .. && mv EIG$(VERSION) eigensoft-$(VERSION)
-	find ../eigensoft-$(VERSION)/bin -type f | grep -v '.perl$$' | xargs -r rm
+	find ../eigensoft-$(VERSION)/bin -type f | grep -v '.perl$$' | egrep -v '(fixgreen|ploteig)' | xargs -r rm
 	find ../eigensoft-$(VERSION)/POPGEN -type f | grep -v '.perl$$' | xargs -r chmod -x
 	find ../eigensoft-$(VERSION)/CONVERTF -type f | grep -v '.perl$$' | xargs -r chmod -x
 	find ../eigensoft-$(VERSION)/EIGENSTRAT -type f | grep -v '.perl$$' | xargs -r chmod -x
 	#find ../eigensoft-$(VERSION) -name "*.o" -delete
-	make -C ../eigensoft-$(VERSION)/src clean
+	make -C ../eigensoft-$(VERSION)/src clobber
 	cd .. && tar cjf eigensoft_$(VERSION).orig.tar.bz2 eigensoft-$(VERSION)