[med-svn] r7942 - in trunk/packages/altree/tags: . 1.0.1-5/debian 1.0.1-5/debian/source
Charles Plessy
plessy at alioth.debian.org
Mon Sep 26 23:42:16 UTC 2011
Author: plessy
Date: 2011-09-26 23:42:15 +0000 (Mon, 26 Sep 2011)
New Revision: 7942
Added:
trunk/packages/altree/tags/1.0.1-5/
trunk/packages/altree/tags/1.0.1-5/debian/changelog
trunk/packages/altree/tags/1.0.1-5/debian/compat
trunk/packages/altree/tags/1.0.1-5/debian/control
trunk/packages/altree/tags/1.0.1-5/debian/copyright
trunk/packages/altree/tags/1.0.1-5/debian/rules
trunk/packages/altree/tags/1.0.1-5/debian/source/format
Removed:
trunk/packages/altree/tags/1.0.1-5/debian/changelog
trunk/packages/altree/tags/1.0.1-5/debian/compat
trunk/packages/altree/tags/1.0.1-5/debian/control
trunk/packages/altree/tags/1.0.1-5/debian/copyright
trunk/packages/altree/tags/1.0.1-5/debian/rules
trunk/packages/altree/tags/1.0.1-5/debian/source/format
Log:
[svn-buildpackage] Tagging altree 1.0.1-5
Deleted: trunk/packages/altree/tags/1.0.1-5/debian/changelog
===================================================================
--- trunk/packages/altree/trunk/debian/changelog 2011-09-26 17:06:33 UTC (rev 7934)
+++ trunk/packages/altree/tags/1.0.1-5/debian/changelog 2011-09-26 23:42:15 UTC (rev 7942)
@@ -1,113 +0,0 @@
-altree (1.1.0-1) UNRELEASED; urgency=low
-
-There are concerns that 1.1.0 should not be packaged, see:
-http://lists.debian.org/msgid-search/4A8E3073.2060100@free.fr
-
- * New upstream release.
-
- -- Andreas Tille <tille at debian.org> Tue, 22 Feb 2011 17:44:12 +0100
-
-altree (1.0.1-4) unstable; urgency=low
-
- [ Charles Plessy ]
- * Depends on libtamuanova-perl (debian/control).
- * Added a BibTeX reference in debian/reference and install it through
- debian/altree.docs.
- * Refreshed debian/copyright.
- * Using debhelper 7 (debian/compat, debian/control).
- * Incremented Standards-Version to reflect conformance to Policy 3.8.1
- (no changes needed).
- * Bash completion:
- - Build-depend on bash-completion >= 1:1 in debian/control.
- - Install the altree completion file using dh_bash-completion.
- * Added information about Upstream in debian/upstream-metadata.yaml.
-
- [ David Paleino ]
- * debian/control:
- - removed unneeded Build-Dependencies
- - added ${misc:Depends} dependency to altree-examples
- - removed myself from Uploaders
- * debian/rules:
- - removing unneeded included Makefile
-
- [Andreas Tille]
- * use short debhelper instead of cdbs because the install target
- did not worked properly any more
- * debian/source/format: 3.0 (quilt)
- * debian/control:
- - Standards-Version: 3.9.1
- - Added myself to Uploaders
- - Added Build-Depends: ghostscript to avoid errors in LaTeX run
- Closes: #614538
- - Removed libtamuanova-perl from Depends again because it has no
- installation candidate
-
- -- Andreas Tille <tille at debian.org> Tue, 22 Feb 2011 14:37:21 +0100
-
-altree (1.0.1-3) unstable; urgency=low
-
- [ Charles Plessy ]
- * Initial release for Debian (Closes: #461506)
- * debian/copyright: converted to machine-readable format.
- * debian/control:
- - Added texlive-lang-french, texlive-latex-base, texlive-latex-recommended
- and texlive-latex-extra as build dependencies.
- - Updated my email address.
-
- [ David Paleino ]
- * Added debian/watch
- * debian/compat and debhelper dependency updated
- * debian/control:
- - added myself in Uploaders
- - Standards-Version is now 3.7.3
-
- [ Vincent Danjean ]
- * remove unused debian/control.in file
- * Fix copyright (and update email addresses)
- * Fix build-depends:
- + remove debian part of version (thanks lintian)
- + change latex-utils to latex-make (always present with this name in
- Debian)
- * Fix depends: add ${perl:Depends}
- * remove empty dir in package (/usr/sbin)
- => package lintian clean now
-
- -- Vincent Danjean <vdanjean at debian.org> Mon, 12 May 2008 08:19:31 +0200
-
-altree (1.0.1-1) unstable; urgency=low
-
- * New upstream release
-
- -- Vincent Danjean <Vincent.Danjean at ens-lyon.org> Fri, 13 Jan 2006 15:46:52 +0100
-
-altree (1.0.0-1) unstable; urgency=low
-
- * New upstream release
-
- -- Vincent Danjean <Vincent.Danjean at ens-lyon.org> Fri, 13 Jan 2006 09:40:02 +0100
-
-altree (0.9.2-2) unstable; urgency=low
-
- * Update FSF address in copyright file
-
- -- Vincent Danjean <Vincent.Danjean at ens-lyon.org> Sat, 10 Sep 2005 10:25:23 +0200
-
-altree (0.9.2-1) unstable; urgency=low
-
- * New upstream release
- * New upstream name
-
- -- Vincent Danjean <Vincent.Danjean at ens-lyon.org> Tue, 2 Aug 2005 19:52:19 +0200
-
-alphy (0.9.1d-1) unstable; urgency=low
-
- * New upstream release
-
- -- Vincent Danjean <Vincent.Danjean at ens-lyon.org> Tue, 26 Jul 2005 00:08:40 +0200
-
-alphy (0.9.1c-1) unstable; urgency=low
-
- * Initial release
-
- -- Vincent Danjean <Vincent.Danjean at ens-lyon.org> Mon, 25 Jul 2005 22:22:50 +0200
-
Copied: trunk/packages/altree/tags/1.0.1-5/debian/changelog (from rev 7941, trunk/packages/altree/trunk/debian/changelog)
===================================================================
--- trunk/packages/altree/tags/1.0.1-5/debian/changelog (rev 0)
+++ trunk/packages/altree/tags/1.0.1-5/debian/changelog 2011-09-26 23:42:15 UTC (rev 7942)
@@ -0,0 +1,116 @@
+altree (1.0.1-5) unstable; urgency=low
+
+ * Upload source package without 3.0 (quilt) autopatch leftover.
+ Closes: #643045.
+ * Corrected VCS URLs in debian/control.
+ * Use Debhelper 8 (debian/control, debian/compat).
+ * Converted debian/copyright to machine-readable format 1.0 (DEP 5).
+ * Compress binary packages with xz (debian/rules).
+ * Conforms with Policy 3.9.2 (debian/control, no other changes needed).
+
+ -- Charles Plessy <plessy at debian.org> Tue, 27 Sep 2011 08:31:14 +0900
+
+altree (1.0.1-4) unstable; urgency=low
+
+ [ Charles Plessy ]
+ * Depends on libtamuanova-perl (debian/control).
+ * Added a BibTeX reference in debian/reference and install it through
+ debian/altree.docs.
+ * Refreshed debian/copyright.
+ * Using debhelper 7 (debian/compat, debian/control).
+ * Incremented Standards-Version to reflect conformance to Policy 3.8.1
+ (no changes needed).
+ * Bash completion:
+ - Build-depend on bash-completion >= 1:1 in debian/control.
+ - Install the altree completion file using dh_bash-completion.
+ * Added information about Upstream in debian/upstream-metadata.yaml.
+
+ [ David Paleino ]
+ * debian/control:
+ - removed unneeded Build-Dependencies
+ - added ${misc:Depends} dependency to altree-examples
+ - removed myself from Uploaders
+ * debian/rules:
+ - removing unneeded included Makefile
+
+ [Andreas Tille]
+ * use short debhelper instead of cdbs because the install target
+ did not worked properly any more
+ * debian/source/format: 3.0 (quilt)
+ * debian/control:
+ - Standards-Version: 3.9.1
+ - Added myself to Uploaders
+ - Added Build-Depends: ghostscript to avoid errors in LaTeX run
+ Closes: #614538
+ - Removed libtamuanova-perl from Depends again because it has no
+ installation candidate
+
+ -- Andreas Tille <tille at debian.org> Tue, 22 Feb 2011 14:37:21 +0100
+
+altree (1.0.1-3) unstable; urgency=low
+
+ [ Charles Plessy ]
+ * Initial release for Debian (Closes: #461506)
+ * debian/copyright: converted to machine-readable format.
+ * debian/control:
+ - Added texlive-lang-french, texlive-latex-base, texlive-latex-recommended
+ and texlive-latex-extra as build dependencies.
+ - Updated my email address.
+
+ [ David Paleino ]
+ * Added debian/watch
+ * debian/compat and debhelper dependency updated
+ * debian/control:
+ - added myself in Uploaders
+ - Standards-Version is now 3.7.3
+
+ [ Vincent Danjean ]
+ * remove unused debian/control.in file
+ * Fix copyright (and update email addresses)
+ * Fix build-depends:
+ + remove debian part of version (thanks lintian)
+ + change latex-utils to latex-make (always present with this name in
+ Debian)
+ * Fix depends: add ${perl:Depends}
+ * remove empty dir in package (/usr/sbin)
+ => package lintian clean now
+
+ -- Vincent Danjean <vdanjean at debian.org> Mon, 12 May 2008 08:19:31 +0200
+
+altree (1.0.1-1) unstable; urgency=low
+
+ * New upstream release
+
+ -- Vincent Danjean <Vincent.Danjean at ens-lyon.org> Fri, 13 Jan 2006 15:46:52 +0100
+
+altree (1.0.0-1) unstable; urgency=low
+
+ * New upstream release
+
+ -- Vincent Danjean <Vincent.Danjean at ens-lyon.org> Fri, 13 Jan 2006 09:40:02 +0100
+
+altree (0.9.2-2) unstable; urgency=low
+
+ * Update FSF address in copyright file
+
+ -- Vincent Danjean <Vincent.Danjean at ens-lyon.org> Sat, 10 Sep 2005 10:25:23 +0200
+
+altree (0.9.2-1) unstable; urgency=low
+
+ * New upstream release
+ * New upstream name
+
+ -- Vincent Danjean <Vincent.Danjean at ens-lyon.org> Tue, 2 Aug 2005 19:52:19 +0200
+
+alphy (0.9.1d-1) unstable; urgency=low
+
+ * New upstream release
+
+ -- Vincent Danjean <Vincent.Danjean at ens-lyon.org> Tue, 26 Jul 2005 00:08:40 +0200
+
+alphy (0.9.1c-1) unstable; urgency=low
+
+ * Initial release
+
+ -- Vincent Danjean <Vincent.Danjean at ens-lyon.org> Mon, 25 Jul 2005 22:22:50 +0200
+
Deleted: trunk/packages/altree/tags/1.0.1-5/debian/compat
===================================================================
--- trunk/packages/altree/trunk/debian/compat 2011-09-26 17:06:33 UTC (rev 7934)
+++ trunk/packages/altree/tags/1.0.1-5/debian/compat 2011-09-26 23:42:15 UTC (rev 7942)
@@ -1 +0,0 @@
-7
Copied: trunk/packages/altree/tags/1.0.1-5/debian/compat (from rev 7937, trunk/packages/altree/trunk/debian/compat)
===================================================================
--- trunk/packages/altree/tags/1.0.1-5/debian/compat (rev 0)
+++ trunk/packages/altree/tags/1.0.1-5/debian/compat 2011-09-26 23:42:15 UTC (rev 7942)
@@ -0,0 +1 @@
+8
Deleted: trunk/packages/altree/tags/1.0.1-5/debian/control
===================================================================
--- trunk/packages/altree/trunk/debian/control 2011-09-26 17:06:33 UTC (rev 7934)
+++ trunk/packages/altree/tags/1.0.1-5/debian/control 2011-09-26 23:42:15 UTC (rev 7942)
@@ -1,36 +0,0 @@
-Source: altree
-Section: science
-Priority: optional
-Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-DM-Upload-Allowed: yes
-Uploaders: Charles Plessy <plessy at debian.org>,
- Vincent Danjean <vdanjean at debian.org>,
- Andreas Tille <tille at debian.org>
-Build-Depends: bash-completion, debhelper (>= 7.0.51), latex-make, ghostscript,
- texlive-lang-french, texlive-latex-extra, texlive-latex-recommended,
- texlive-fonts-recommended
-Standards-Version: 3.9.1
-Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/altree/trunk/?rev=0&sc=0
-Vcs-Svn: svn://svn.debian.org/svn/debian-med/trunk/packages/altree/trunk
-Homepage: http://claire.bardel.free.fr/software.html
-
-Package: altree
-Architecture: any
-Conflicts: libcutils-perl, alphy
-Replaces: libcutils-perl, alphy
-Provides: libcutils-perl, alphy
-Depends: ${shlibs:Depends}, ${misc:Depends}, ${perl:Depends}
-Suggests: altree-examples
-Description: program to perform phylogeny-based association and localization analysis
- ALTree was designed to perform association detection and localization of
- susceptibility sites using haplotype phylogenetic trees: first, it allows the
- detection of an association between a candidate gene and a disease, and second,
- it enables to make hypothesis about the susceptibility loci.
-
-Package: altree-examples
-Architecture: all
-Recommends: altree (= ${binary:Version})
-Depends: ${misc:Depends}
-Description: example files for ALTree
- This package contains the example files for the ALTree package discussed in
- its PDF manual.
Copied: trunk/packages/altree/tags/1.0.1-5/debian/control (from rev 7940, trunk/packages/altree/trunk/debian/control)
===================================================================
--- trunk/packages/altree/tags/1.0.1-5/debian/control (rev 0)
+++ trunk/packages/altree/tags/1.0.1-5/debian/control 2011-09-26 23:42:15 UTC (rev 7942)
@@ -0,0 +1,36 @@
+Source: altree
+Section: science
+Priority: optional
+Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+DM-Upload-Allowed: yes
+Uploaders: Charles Plessy <plessy at debian.org>,
+ Vincent Danjean <vdanjean at debian.org>,
+ Andreas Tille <tille at debian.org>
+Build-Depends: bash-completion, debhelper (>= 8), latex-make, ghostscript,
+ texlive-lang-french, texlive-latex-extra, texlive-latex-recommended,
+ texlive-fonts-recommended
+Standards-Version: 3.9.2
+Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/altree/trunk/
+Vcs-Svn: svn://svn.debian.org/debian-med/trunk/packages/altree/trunk
+Homepage: http://claire.bardel.free.fr/software.html
+
+Package: altree
+Architecture: any
+Conflicts: libcutils-perl, alphy
+Replaces: libcutils-perl, alphy
+Provides: libcutils-perl, alphy
+Depends: ${shlibs:Depends}, ${misc:Depends}, ${perl:Depends}
+Suggests: altree-examples
+Description: program to perform phylogeny-based association and localization analysis
+ ALTree was designed to perform association detection and localization of
+ susceptibility sites using haplotype phylogenetic trees: first, it allows the
+ detection of an association between a candidate gene and a disease, and second,
+ it enables to make hypothesis about the susceptibility loci.
+
+Package: altree-examples
+Architecture: all
+Recommends: altree (= ${binary:Version})
+Depends: ${misc:Depends}
+Description: example files for ALTree
+ This package contains the example files for the ALTree package discussed in
+ its PDF manual.
Deleted: trunk/packages/altree/tags/1.0.1-5/debian/copyright
===================================================================
--- trunk/packages/altree/trunk/debian/copyright 2011-09-26 17:06:33 UTC (rev 7934)
+++ trunk/packages/altree/tags/1.0.1-5/debian/copyright 2011-09-26 23:42:15 UTC (rev 7942)
@@ -1,31 +0,0 @@
-Format: Machine-readable license summary, see ‘http://dep.debian.net/deps/dep5/’.
-
-Name: ALTree
-Contact: Claire Bardel
-Source: http://claire.bardel.free.fr/files/altree-1.1.0.tar.gz
-
-Copyright: © 2005-2008 Claire Bardel <Claire.Bardel at univ-lyon1.fr>
- © 2005-2007 Vincent Danjean <vdanjean.ml at free.fr>
-License: GPL-2+
- This package is free software; you can redistribute it and/or modify
- it under the terms of the GNU General Public License as published by
- the Free Software Foundation; either version 2 of the License, or
- (at your option) any later version.
- .
- This package is distributed in the hope that it will be useful,
- but WITHOUT ANY WARRANTY; without even the implied warranty of
- MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
- GNU General Public License for more details.
- .
- You should have received a copy of the GNU General Public License
- along with this package; if not, write to the Free Software
- Foundation, Inc., 51 Franklin St, Fifth Floor, Boston,
- MA 02110-1301, USA.
-Comment: On Debian systems, the complete text of the GNU General Public License
- version 2 can be found in ‘/usr/share/common-licenses/GPL-2’.
-
-Files: debian/*
-Copyright: © 2005—2008 Vincean Danjean <Vincent.Danjean at ens-lyon.org>
- © 2008 David Paleino <d.paleino at gmail.com>
- © 2008–2009 Charles Plessy <plessy at debian.org>
-License: Same as altree
Copied: trunk/packages/altree/tags/1.0.1-5/debian/copyright (from rev 7938, trunk/packages/altree/trunk/debian/copyright)
===================================================================
--- trunk/packages/altree/tags/1.0.1-5/debian/copyright (rev 0)
+++ trunk/packages/altree/tags/1.0.1-5/debian/copyright 2011-09-26 23:42:15 UTC (rev 7942)
@@ -0,0 +1,30 @@
+Format: http://dep.debian.net/deps/dep5/
+Source: http://claire.bardel.free.fr/files/altree-1.0.1.tar.gz
+
+Files: *
+Copyright: © 2005-2008 Claire Bardel <Claire.Bardel at univ-lyon1.fr>
+ © 2005-2007 Vincent Danjean <vdanjean.ml at free.fr>
+License: GPL-2+
+ This package is free software; you can redistribute it and/or modify
+ it under the terms of the GNU General Public License as published by
+ the Free Software Foundation; either version 2 of the License, or
+ (at your option) any later version.
+ .
+ This package is distributed in the hope that it will be useful,
+ but WITHOUT ANY WARRANTY; without even the implied warranty of
+ MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ GNU General Public License for more details.
+ .
+ You should have received a copy of the GNU General Public License
+ along with this package; if not, write to the Free Software
+ Foundation, Inc., 51 Franklin St, Fifth Floor, Boston,
+ MA 02110-1301, USA.
+Comment: On Debian systems, the complete text of the GNU General Public License
+ version 2 can be found in ‘/usr/share/common-licenses/GPL-2’.
+
+Files: debian/*
+Copyright: © 2005—2008 Vincean Danjean <Vincent.Danjean at ens-lyon.org>
+ © 2008 David Paleino <d.paleino at gmail.com>
+ © 2008–2009 Charles Plessy <plessy at debian.org>
+License: Same
+ Same as altree itself
Deleted: trunk/packages/altree/tags/1.0.1-5/debian/rules
===================================================================
--- trunk/packages/altree/trunk/debian/rules 2011-09-26 17:06:33 UTC (rev 7934)
+++ trunk/packages/altree/tags/1.0.1-5/debian/rules 2011-09-26 23:42:15 UTC (rev 7942)
@@ -1,22 +0,0 @@
-#!/usr/bin/make -f
-# -*- makefile -*-
-# debian/rules file for altree
-# Andreas Tille <tille at debian.org>
-# GPL
-
-%:
- dh $@
-
-override_dh_auto_clean:
- $(MAKE) -C Documentation distclean
- dh_auto_clean
-
-override_dh_auto_build:
- $(MAKE) -C Documentation pdf
- dh_auto_build
-
-override_dh_auto_install:
- $(MAKE) PREFIX=debian/altree/usr install
-
-override_dh_compress:
- dh_compress --exclude=.pdf
Copied: trunk/packages/altree/tags/1.0.1-5/debian/rules (from rev 7939, trunk/packages/altree/trunk/debian/rules)
===================================================================
--- trunk/packages/altree/tags/1.0.1-5/debian/rules (rev 0)
+++ trunk/packages/altree/tags/1.0.1-5/debian/rules 2011-09-26 23:42:15 UTC (rev 7942)
@@ -0,0 +1,25 @@
+#!/usr/bin/make -f
+# -*- makefile -*-
+# debian/rules file for altree
+# Andreas Tille <tille at debian.org>
+# GPL
+
+%:
+ dh $@
+
+override_dh_auto_clean:
+ $(MAKE) -C Documentation distclean
+ dh_auto_clean
+
+override_dh_auto_build:
+ $(MAKE) -C Documentation pdf
+ dh_auto_build
+
+override_dh_auto_install:
+ $(MAKE) PREFIX=debian/altree/usr install
+
+override_dh_compress:
+ dh_compress --exclude=.pdf
+
+override_dh_builddeb:
+ dh_builddeb -- -Z xz
Deleted: trunk/packages/altree/tags/1.0.1-5/debian/source/format
===================================================================
--- trunk/packages/altree/trunk/debian/source/format 2011-09-26 17:06:33 UTC (rev 7934)
+++ trunk/packages/altree/tags/1.0.1-5/debian/source/format 2011-09-26 23:42:15 UTC (rev 7942)
@@ -1 +0,0 @@
-3.0 (quilt)
Copied: trunk/packages/altree/tags/1.0.1-5/debian/source/format (from rev 7941, trunk/packages/altree/trunk/debian/source/format)
===================================================================
--- trunk/packages/altree/tags/1.0.1-5/debian/source/format (rev 0)
+++ trunk/packages/altree/tags/1.0.1-5/debian/source/format 2011-09-26 23:42:15 UTC (rev 7942)
@@ -0,0 +1 @@
+3.0 (quilt)
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