[med-svn] r7947 - in trunk/packages/velvet/tags: . 1.1.06~nozlibcopy-1/debian
Charles Plessy
plessy at alioth.debian.org
Tue Sep 27 06:43:14 UTC 2011
Author: plessy
Date: 2011-09-27 06:43:14 +0000 (Tue, 27 Sep 2011)
New Revision: 7947
Added:
trunk/packages/velvet/tags/1.1.06~nozlibcopy-1/
trunk/packages/velvet/tags/1.1.06~nozlibcopy-1/debian/changelog
trunk/packages/velvet/tags/1.1.06~nozlibcopy-1/debian/rules
Removed:
trunk/packages/velvet/tags/1.1.06~nozlibcopy-1/debian/changelog
trunk/packages/velvet/tags/1.1.06~nozlibcopy-1/debian/rules
Log:
[svn-buildpackage] Tagging velvet 1.1.06~nozlibcopy-1
Deleted: trunk/packages/velvet/tags/1.1.06~nozlibcopy-1/debian/changelog
===================================================================
--- trunk/packages/velvet/trunk/debian/changelog 2011-09-27 04:06:31 UTC (rev 7944)
+++ trunk/packages/velvet/tags/1.1.06~nozlibcopy-1/debian/changelog 2011-09-27 06:43:14 UTC (rev 7947)
@@ -1,261 +0,0 @@
-velvet (1.1.06~nozlibcopy-1) UNRELEASED; urgency=low
-
- [ Andreas Tille ]
- * New upstream version
- * debian/copyright: Revised
- * debian/get-orig-source: Do not remove MetaVelvet
- * debian/control:
- Build-Depends: texlive-latex-base
-
- [ Charles Plessy ]
- * Corrected VCS URLs in debian/control.
- * Compress source and binary packages with xz
- (debian/rules, debian/get-orig-source).
-
- -- Andreas Tille <tille at debian.org> Fri, 12 Aug 2011 15:36:22 +0200
-
-velvet (1.1.05-1ubuntu4) lucid; urgency=low
-
- * Moved from CDBS to DH
- * New upstream. Still includes a copy of Zlib but the default
- is now to use the system version, so removed relevant patch.
- * Modified build to work on unmodified upstream (still works on
- pruned upstream).
-
- -- Tim Booth <tbooth at ceh.ac.uk> Thu, 11 Aug 2011 13:34:46 +0100
-
-velvet (1.1.02~nozlibcopy-1) unstable; urgency=low
-
- * New upstream version
- upgraded patches, tweak $(LIBS) into Z_LIB_FILES variable
- of Makefile which makes patch more robust against upstream
- changes
- * Debhelper 8 (control+compat)
- * debian/rules: Leave out Z_LIB_FILES in parameter list
- * debian/get-orig-source: Once we are rebuilding the original
- tarball anyway it makes sense to remove an outdated copy of
- MetaVelvet and replace it rather by a hint to the currently
- maintained source in README.source
- * Standards-Version: 3.9.2 (no changes needed)
-
- -- Andreas Tille <tille at debian.org> Fri, 15 Apr 2011 10:51:16 +0200
-
-velvet (1.0.18~nozlibcopy-1) unstable; urgency=low
-
- * New upstream version
- * debian/get-orig-source: Make sure MD5sum stays the same for different
- download
-
- -- Andreas Tille <tille at debian.org> Wed, 19 Jan 2011 08:48:19 +0100
-
-velvet (1.0.15~nozlibcopy-2) unstable; urgency=low
-
- * Fix FTBFS with ld --as-needed (thanks for the patch to
- Matthias Klose)
- Closes: #607535
-
- -- Andreas Tille <tille at debian.org> Mon, 20 Dec 2010 08:43:16 +0100
-
-velvet (1.0.15~nozlibcopy-1) unstable; urgency=low
-
- * New upstream source
- * Standards-Version: 3.9.1 (no changes needed)
- * debian/get-upstream-source: Remove precompiled *.o files and
- .DS_Store files once we are repackaging anyway
- * debian/patches/fix-perl-path.patch: Fix Perl path
-
- -- Andreas Tille <tille at debian.org> Wed, 24 Nov 2010 15:42:33 +0100
-
-velvet (1.0.02~nozlibcopy-1) unstable; urgency=low
-
- * New upstream version
- * Source format 3.0 (quilt)
- * debian/control:
- - Recommends: python (some new scripts in /usr/share/velvet/contrib
- are Python scripts)
- - Build-Depends: quilt
- * debian/rules:
- include /usr/share/cdbs/1/rules/patchsys-quilt.mk
- (instead of simple-patchsys)
- * debian/patches: Switch to quilt
- * debian/patches/shuffleSequences_fasta.patch:
- Add interpreter to Python script
-
- -- Andreas Tille <tille at debian.org> Thu, 24 Jun 2010 15:41:53 +0200
-
-velvet (0.7.61~nozlibcopy-1) unstable; urgency=low
-
- * New upstream version
- * debian/get-orig-source, debian/rules: Strip zlib copy from
- upstream tarball
-
- -- Andreas Tille <tille at debian.org> Mon, 22 Mar 2010 15:41:53 +0100
-
-velvet (0.7.59~nozlibcopy-1) unstable; urgency=low
-
- * New upstream release
-
- [ Charles Plessy ]
- * Incremented Standard-Version in debian/control to reflect conformance
- with Policy 3.8.4 (no changes needed).
-
- [ Andreas Tille ]
- * Fixed watch file to make sure it is not supporting newer upstream
-
- -- Charles Plessy <plessy at debian.org> Sat, 20 Feb 2010 13:00:13 +0900
-
-velvet (0.7.56~nozlibcopy-1) unstable; urgency=low
-
- * New upstream version.
- * Repackaged the upstream directory to remove the convenience copy
- of the zlib. Documented this in ‘debian/README.source’.
- Closes: #561433.
- * Updated debian/copyright.
- * Added ‘include_debians_zlib.patch’ to enforce the use of
- /usr/include/zlib.h. This patch is applied using CDBS, see
- ‘debian/rules’ and ‘debian/README.source’.
- * Renamed ‘debian/reference’ ‘debian/upstream-metadata.yaml’ and
- centralised upstream-specific information there.
-
- -- Charles Plessy <plessy at debian.org> Mon, 25 Jan 2010 13:03:06 +0900
-
-velvet (0.7.55-1) unstable; urgency=low
-
- * New upstream version
-
- -- Andreas Tille <tille at debian.org> Fri, 25 Sep 2009 14:52:41 +0200
-
-velvet (0.7.53-1) unstable; urgency=low
-
- * New upstream release:
- - Ignored reads in Pebble corrected
- - Added automatic measure of median coverage and median insert length
- - Updated manual to cover the above
-
- -- Charles Plessy <plessy at debian.org> Fri, 04 Sep 2009 13:42:22 +0900
-
-velvet (0.7.52-1) unstable; urgency=low
-
- * New upstream release:
- V 0.7.51
- - Small parsing bug
- - Correction to the observed-insert-length script
- - Verified strncpy calls
- - NCBI friendly 10bp N-gaps
- V 0.7.52
- - Crashing bug when parsing fa.gz files
- - Crashing bug with tiny Graph files
- - Bug when loading FASTA files with short lines
- - Corrected snp_view.pl script to write reverse strand reads in
- snp_view_reads file
- - Corrected snp_view.pl script to behave better near the edges of contigs
- - Updated observed_insert_length to compute the standard deviation of
- the set
- - Corrected observed_insert_length script so that it does not crash on
- empty libraries
- - Crashing bug when providing an odd number of paired reads
- - Mapping bug of reads during tour bus correction
- * Replaced the UNRELEASED tag by ‘unstable’ in debian/changelog as
- 0.7.50-1 was really uploaded and accepted by the archive.
-
- -- Charles Plessy <plessy at debian.org> Thu, 03 Sep 2009 20:00:54 +0900
-
-velvet (0.7.50-1) unstable; urgency=low
-
- * New upstream release:
- V 0.7.49
- - Added the optional output of unused reads
- - Added David Studholme's FastA -> AGP script
- V 0.7.50
- - Added the extractContigReads script
- - Updated the FastA -> AGP script
- - Added the observed-insert-length script
- - Small parsing bug in simplified read import
- * Incremented Standards-Version in debian/control to reflect conformance
- with Policy 3.8.3 (no changes needed).
-
- -- Charles Plessy <plessy at debian.org> Wed, 19 Aug 2009 21:58:49 +0900
-
-velvet (0.7.48-1) unstable; urgency=low
-
- * New upstream release:
- - Accelerated concatenation (pre-graph and graph)
- - Unlimited contig size
- - Bug in parsing FASTA files with very long lines
- - Parsing bug in snp_view.pl script
-
- -- Charles Plessy <plessy at debian.org> Tue, 11 Aug 2009 19:54:03 +0900
-
-velvet (0.7.47-1) unstable; urgency=low
-
- * New upstream release correcting bugs and enhancing documentation.
- * Multi-Arch support (‘foreign’) in debian/control.
- * Corrected debian/install to avoid ugly ‘contrib/contrib’ location.
-
- -- Charles Plessy <plessy at debian.org> Thu, 30 Jul 2009 13:43:13 +0900
-
-velvet (0.7.44-1) unstable; urgency=low
-
- * New upstream release.
- * Added bibliographic information in BibTeX format in debian/references.
- * debian/rules: touch zlib to avoid third-party zlib to be built.
- * Removed ‘debian/patches/20_external_zlib.patch’. Passing apropriate
- variables in debian/rules is enough to build dynamically on Debian's
- zlib.
- * Removed the quilt patch system (debian/control, debian/README.source
- debian/rules).
- * Incremented Standards-Version in debian/control to reflect conformance
- with Policy 3.8.2 (no changes needed).
- * Corrected the installation of files that were moved from the
- ‘third-party’ directory to the ‘contrib’ directory.
- * Experimentation on debian/copyright.
-
- -- Charles Plessy <plessy at debian.org> Sun, 12 Jul 2009 00:24:56 +0900
-
-velvet (0.7.37-1) unstable; urgency=low
-
- * New upstream release.
- - Small formatting change to error messages
- - K > 31 now possible
- - --help option corrected for velvetg
- - Acceleration of k-mer operations (comparable to 64bit int performance)
- - Fixed variable lengths
- - Reordered struct declaration for more efficent memory alignment
- * debian/rules:
- - Restored manpage generation for velvetg*.
- - Added forgotten CFLAGS for the colorspace building.
-
- -- Charles Plessy <plessy at debian.org> Sat, 27 Jun 2009 12:27:27 +0900
-
-velvet (0.7.34-1) unstable; urgency=low
-
- * New upstream release correcting multiple bugs, changing the stats output,
- allowing optional scaffolding and multiple rounds of Pebble.
- * Added the programs velveth_de and velvetg_de to the package in /usr/bin,
- and the scripts shuffleSequences_fasta.pl and shuffleSequences_fastq.pl in
- /usr/share/velvet (debian/rules, debian/install).
- * Refreshed debian/copyright.
- * Temporarly disabled the manpage generation of velvetg* because the --help
- option is not available (debian/rules).
-
- -- Charles Plessy <plessy at debian.org> Tue, 09 Jun 2009 21:28:03 +0900
-
-velvet (0.7.31-1) unstable; urgency=low
-
- * New upstream version
- * Standards-Version: 3.8.1 (no changes needed)
- * Create manpages using help2man
- * Move third-party/layout and third-party/afg_handling to examples
- because these scripts are actually not to run velvet but for
- the convenience of users - in /urs/share/velvet these scripts
- seem to be perfectly hidden and in /usr/share/doc/velvet might
- create users attendance
- * Added missing quilt entry in debian/rules
-
- -- Andreas Tille <tille at debian.org> Fri, 27 Mar 2009 13:23:32 +0100
-
-velvet (0.7.24-1) unstable; urgency=low
-
- * Initial release (Closes: #487026)
-
- -- Charles Plessy <plessy at debian.org> Wed, 09 Jul 2008 14:06:55 +0900
Copied: trunk/packages/velvet/tags/1.1.06~nozlibcopy-1/debian/changelog (from rev 7946, trunk/packages/velvet/trunk/debian/changelog)
===================================================================
--- trunk/packages/velvet/tags/1.1.06~nozlibcopy-1/debian/changelog (rev 0)
+++ trunk/packages/velvet/tags/1.1.06~nozlibcopy-1/debian/changelog 2011-09-27 06:43:14 UTC (rev 7947)
@@ -0,0 +1,263 @@
+velvet (1.1.06~nozlibcopy-1) unstable; urgency=low
+
+ [ Andreas Tille ]
+ * New upstream version
+ * debian/copyright: Revised
+ * debian/get-orig-source: Do not remove MetaVelvet
+ * debian/control:
+ Build-Depends: texlive-latex-base
+
+ [ Charles Plessy ]
+ * Corrected VCS URLs in debian/control.
+ * Compress source and binary packages with xz
+ (debian/rules, debian/get-orig-source).
+ * Turn on multithreading with OpenMP (debian/rules).
+ * Remove empty directory contrib/MetaVelvet-v0.3.1/obj (debian/rules).
+
+ -- Charles Plessy <plessy at debian.org> Tue, 27 Sep 2011 15:12:41 +0900
+
+velvet (1.1.05-1ubuntu4) lucid; urgency=low
+
+ * Moved from CDBS to DH
+ * New upstream. Still includes a copy of Zlib but the default
+ is now to use the system version, so removed relevant patch.
+ * Modified build to work on unmodified upstream (still works on
+ pruned upstream).
+
+ -- Tim Booth <tbooth at ceh.ac.uk> Thu, 11 Aug 2011 13:34:46 +0100
+
+velvet (1.1.02~nozlibcopy-1) unstable; urgency=low
+
+ * New upstream version
+ upgraded patches, tweak $(LIBS) into Z_LIB_FILES variable
+ of Makefile which makes patch more robust against upstream
+ changes
+ * Debhelper 8 (control+compat)
+ * debian/rules: Leave out Z_LIB_FILES in parameter list
+ * debian/get-orig-source: Once we are rebuilding the original
+ tarball anyway it makes sense to remove an outdated copy of
+ MetaVelvet and replace it rather by a hint to the currently
+ maintained source in README.source
+ * Standards-Version: 3.9.2 (no changes needed)
+
+ -- Andreas Tille <tille at debian.org> Fri, 15 Apr 2011 10:51:16 +0200
+
+velvet (1.0.18~nozlibcopy-1) unstable; urgency=low
+
+ * New upstream version
+ * debian/get-orig-source: Make sure MD5sum stays the same for different
+ download
+
+ -- Andreas Tille <tille at debian.org> Wed, 19 Jan 2011 08:48:19 +0100
+
+velvet (1.0.15~nozlibcopy-2) unstable; urgency=low
+
+ * Fix FTBFS with ld --as-needed (thanks for the patch to
+ Matthias Klose)
+ Closes: #607535
+
+ -- Andreas Tille <tille at debian.org> Mon, 20 Dec 2010 08:43:16 +0100
+
+velvet (1.0.15~nozlibcopy-1) unstable; urgency=low
+
+ * New upstream source
+ * Standards-Version: 3.9.1 (no changes needed)
+ * debian/get-upstream-source: Remove precompiled *.o files and
+ .DS_Store files once we are repackaging anyway
+ * debian/patches/fix-perl-path.patch: Fix Perl path
+
+ -- Andreas Tille <tille at debian.org> Wed, 24 Nov 2010 15:42:33 +0100
+
+velvet (1.0.02~nozlibcopy-1) unstable; urgency=low
+
+ * New upstream version
+ * Source format 3.0 (quilt)
+ * debian/control:
+ - Recommends: python (some new scripts in /usr/share/velvet/contrib
+ are Python scripts)
+ - Build-Depends: quilt
+ * debian/rules:
+ include /usr/share/cdbs/1/rules/patchsys-quilt.mk
+ (instead of simple-patchsys)
+ * debian/patches: Switch to quilt
+ * debian/patches/shuffleSequences_fasta.patch:
+ Add interpreter to Python script
+
+ -- Andreas Tille <tille at debian.org> Thu, 24 Jun 2010 15:41:53 +0200
+
+velvet (0.7.61~nozlibcopy-1) unstable; urgency=low
+
+ * New upstream version
+ * debian/get-orig-source, debian/rules: Strip zlib copy from
+ upstream tarball
+
+ -- Andreas Tille <tille at debian.org> Mon, 22 Mar 2010 15:41:53 +0100
+
+velvet (0.7.59~nozlibcopy-1) unstable; urgency=low
+
+ * New upstream release
+
+ [ Charles Plessy ]
+ * Incremented Standard-Version in debian/control to reflect conformance
+ with Policy 3.8.4 (no changes needed).
+
+ [ Andreas Tille ]
+ * Fixed watch file to make sure it is not supporting newer upstream
+
+ -- Charles Plessy <plessy at debian.org> Sat, 20 Feb 2010 13:00:13 +0900
+
+velvet (0.7.56~nozlibcopy-1) unstable; urgency=low
+
+ * New upstream version.
+ * Repackaged the upstream directory to remove the convenience copy
+ of the zlib. Documented this in ‘debian/README.source’.
+ Closes: #561433.
+ * Updated debian/copyright.
+ * Added ‘include_debians_zlib.patch’ to enforce the use of
+ /usr/include/zlib.h. This patch is applied using CDBS, see
+ ‘debian/rules’ and ‘debian/README.source’.
+ * Renamed ‘debian/reference’ ‘debian/upstream-metadata.yaml’ and
+ centralised upstream-specific information there.
+
+ -- Charles Plessy <plessy at debian.org> Mon, 25 Jan 2010 13:03:06 +0900
+
+velvet (0.7.55-1) unstable; urgency=low
+
+ * New upstream version
+
+ -- Andreas Tille <tille at debian.org> Fri, 25 Sep 2009 14:52:41 +0200
+
+velvet (0.7.53-1) unstable; urgency=low
+
+ * New upstream release:
+ - Ignored reads in Pebble corrected
+ - Added automatic measure of median coverage and median insert length
+ - Updated manual to cover the above
+
+ -- Charles Plessy <plessy at debian.org> Fri, 04 Sep 2009 13:42:22 +0900
+
+velvet (0.7.52-1) unstable; urgency=low
+
+ * New upstream release:
+ V 0.7.51
+ - Small parsing bug
+ - Correction to the observed-insert-length script
+ - Verified strncpy calls
+ - NCBI friendly 10bp N-gaps
+ V 0.7.52
+ - Crashing bug when parsing fa.gz files
+ - Crashing bug with tiny Graph files
+ - Bug when loading FASTA files with short lines
+ - Corrected snp_view.pl script to write reverse strand reads in
+ snp_view_reads file
+ - Corrected snp_view.pl script to behave better near the edges of contigs
+ - Updated observed_insert_length to compute the standard deviation of
+ the set
+ - Corrected observed_insert_length script so that it does not crash on
+ empty libraries
+ - Crashing bug when providing an odd number of paired reads
+ - Mapping bug of reads during tour bus correction
+ * Replaced the UNRELEASED tag by ‘unstable’ in debian/changelog as
+ 0.7.50-1 was really uploaded and accepted by the archive.
+
+ -- Charles Plessy <plessy at debian.org> Thu, 03 Sep 2009 20:00:54 +0900
+
+velvet (0.7.50-1) unstable; urgency=low
+
+ * New upstream release:
+ V 0.7.49
+ - Added the optional output of unused reads
+ - Added David Studholme's FastA -> AGP script
+ V 0.7.50
+ - Added the extractContigReads script
+ - Updated the FastA -> AGP script
+ - Added the observed-insert-length script
+ - Small parsing bug in simplified read import
+ * Incremented Standards-Version in debian/control to reflect conformance
+ with Policy 3.8.3 (no changes needed).
+
+ -- Charles Plessy <plessy at debian.org> Wed, 19 Aug 2009 21:58:49 +0900
+
+velvet (0.7.48-1) unstable; urgency=low
+
+ * New upstream release:
+ - Accelerated concatenation (pre-graph and graph)
+ - Unlimited contig size
+ - Bug in parsing FASTA files with very long lines
+ - Parsing bug in snp_view.pl script
+
+ -- Charles Plessy <plessy at debian.org> Tue, 11 Aug 2009 19:54:03 +0900
+
+velvet (0.7.47-1) unstable; urgency=low
+
+ * New upstream release correcting bugs and enhancing documentation.
+ * Multi-Arch support (‘foreign’) in debian/control.
+ * Corrected debian/install to avoid ugly ‘contrib/contrib’ location.
+
+ -- Charles Plessy <plessy at debian.org> Thu, 30 Jul 2009 13:43:13 +0900
+
+velvet (0.7.44-1) unstable; urgency=low
+
+ * New upstream release.
+ * Added bibliographic information in BibTeX format in debian/references.
+ * debian/rules: touch zlib to avoid third-party zlib to be built.
+ * Removed ‘debian/patches/20_external_zlib.patch’. Passing apropriate
+ variables in debian/rules is enough to build dynamically on Debian's
+ zlib.
+ * Removed the quilt patch system (debian/control, debian/README.source
+ debian/rules).
+ * Incremented Standards-Version in debian/control to reflect conformance
+ with Policy 3.8.2 (no changes needed).
+ * Corrected the installation of files that were moved from the
+ ‘third-party’ directory to the ‘contrib’ directory.
+ * Experimentation on debian/copyright.
+
+ -- Charles Plessy <plessy at debian.org> Sun, 12 Jul 2009 00:24:56 +0900
+
+velvet (0.7.37-1) unstable; urgency=low
+
+ * New upstream release.
+ - Small formatting change to error messages
+ - K > 31 now possible
+ - --help option corrected for velvetg
+ - Acceleration of k-mer operations (comparable to 64bit int performance)
+ - Fixed variable lengths
+ - Reordered struct declaration for more efficent memory alignment
+ * debian/rules:
+ - Restored manpage generation for velvetg*.
+ - Added forgotten CFLAGS for the colorspace building.
+
+ -- Charles Plessy <plessy at debian.org> Sat, 27 Jun 2009 12:27:27 +0900
+
+velvet (0.7.34-1) unstable; urgency=low
+
+ * New upstream release correcting multiple bugs, changing the stats output,
+ allowing optional scaffolding and multiple rounds of Pebble.
+ * Added the programs velveth_de and velvetg_de to the package in /usr/bin,
+ and the scripts shuffleSequences_fasta.pl and shuffleSequences_fastq.pl in
+ /usr/share/velvet (debian/rules, debian/install).
+ * Refreshed debian/copyright.
+ * Temporarly disabled the manpage generation of velvetg* because the --help
+ option is not available (debian/rules).
+
+ -- Charles Plessy <plessy at debian.org> Tue, 09 Jun 2009 21:28:03 +0900
+
+velvet (0.7.31-1) unstable; urgency=low
+
+ * New upstream version
+ * Standards-Version: 3.8.1 (no changes needed)
+ * Create manpages using help2man
+ * Move third-party/layout and third-party/afg_handling to examples
+ because these scripts are actually not to run velvet but for
+ the convenience of users - in /urs/share/velvet these scripts
+ seem to be perfectly hidden and in /usr/share/doc/velvet might
+ create users attendance
+ * Added missing quilt entry in debian/rules
+
+ -- Andreas Tille <tille at debian.org> Fri, 27 Mar 2009 13:23:32 +0100
+
+velvet (0.7.24-1) unstable; urgency=low
+
+ * Initial release (Closes: #487026)
+
+ -- Charles Plessy <plessy at debian.org> Wed, 09 Jul 2008 14:06:55 +0900
Deleted: trunk/packages/velvet/tags/1.1.06~nozlibcopy-1/debian/rules
===================================================================
--- trunk/packages/velvet/trunk/debian/rules 2011-09-27 04:06:31 UTC (rev 7944)
+++ trunk/packages/velvet/tags/1.1.06~nozlibcopy-1/debian/rules 2011-09-27 06:43:14 UTC (rev 7947)
@@ -1,49 +0,0 @@
-#!/usr/bin/make -f
-
-# Uncomment this to turn on verbose mode.
-#export DH_VERBOSE=1
-
-%:
- dh $@ --with quilt
-
-pkg=velvet
-
-override_dh_auto_clean :
- dh_auto_clean
- rm -rf zlib
-
-override_dh_auto_build :
- touch zlib # prevents the zlib in the ‘third-party’ folder to be built.
- dh_auto_build
- dh_auto_build -- color
-
-override_dh_install :
- mkdir -p $(CURDIR)/debian/$(pkg)/usr/share/man/man1/
- help2man --no-info --name="simple hashing program" \
- $(CURDIR)/velveth > $(CURDIR)/debian/$(pkg)/usr/share/man/man1/velveth.1
- help2man --no-info --name="simple hashing program (colorspace version)" \
- $(CURDIR)/velveth_de > $(CURDIR)/debian/$(pkg)/usr/share/man/man1/velveth_de.1
- help2man --no-info --version-option=" " \
- --name="de Bruijn graph construction, error removal and repeat resolution" \
- $(CURDIR)/velvetg > $(CURDIR)/debian/$(pkg)/usr/share/man/man1/velvetg.1
- help2man --no-info --version-option=" " \
- --name="de Bruijn graph construction, error removal and repeat resolution (colorspace version)" \
- $(CURDIR)/velvetg_de > $(CURDIR)/debian/$(pkg)/usr/share/man/man1/velvetg_de.1
- dh_install
- #If the tarball is not being scrubbed we need this.
- # find $(CURDIR)/debian/$(pkg) -name '.DS_Store' -exec rm {} \;
- # rm -rf $(CURDIR)/debian/$(pkg)/usr/share/velvet/contrib/MetaVelvet*
-
-#Prevent compression of user manual
-override_dh_compress :
- dh_compress -X.pdf
-
-override_dh_pysupport :
- #Not needed, Python scripts are just for examples
-
-override_dh_builddeb:
- dh_builddeb -- -Z xz
-
-get-orig-source:
- . debian/get-orig-source
-
Copied: trunk/packages/velvet/tags/1.1.06~nozlibcopy-1/debian/rules (from rev 7946, trunk/packages/velvet/trunk/debian/rules)
===================================================================
--- trunk/packages/velvet/tags/1.1.06~nozlibcopy-1/debian/rules (rev 0)
+++ trunk/packages/velvet/tags/1.1.06~nozlibcopy-1/debian/rules 2011-09-27 06:43:14 UTC (rev 7947)
@@ -0,0 +1,49 @@
+#!/usr/bin/make -f
+
+# Uncomment this to turn on verbose mode.
+#export DH_VERBOSE=1
+
+%:
+ dh $@ --with quilt
+
+pkg=velvet
+
+override_dh_auto_clean :
+ dh_auto_clean
+ rm -rf zlib
+
+override_dh_auto_build :
+ touch zlib # prevents the zlib in the ‘third-party’ folder to be built.
+ dh_auto_build -- OPENMP=1
+ dh_auto_build -- color OPENMP=1
+
+override_dh_install :
+ mkdir -p $(CURDIR)/debian/$(pkg)/usr/share/man/man1/
+ help2man --no-info --name="simple hashing program" \
+ $(CURDIR)/velveth > $(CURDIR)/debian/$(pkg)/usr/share/man/man1/velveth.1
+ help2man --no-info --name="simple hashing program (colorspace version)" \
+ $(CURDIR)/velveth_de > $(CURDIR)/debian/$(pkg)/usr/share/man/man1/velveth_de.1
+ help2man --no-info --version-option=" " \
+ --name="de Bruijn graph construction, error removal and repeat resolution" \
+ $(CURDIR)/velvetg > $(CURDIR)/debian/$(pkg)/usr/share/man/man1/velvetg.1
+ help2man --no-info --version-option=" " \
+ --name="de Bruijn graph construction, error removal and repeat resolution (colorspace version)" \
+ $(CURDIR)/velvetg_de > $(CURDIR)/debian/$(pkg)/usr/share/man/man1/velvetg_de.1
+ dh_install
+ #If the tarball is not being scrubbed we need this.
+ # find $(CURDIR)/debian/$(pkg) -name '.DS_Store' -exec rm {} \;
+ rmdir $(CURDIR)/debian/$(pkg)/usr/share/velvet/contrib/MetaVelvet-v0.3.1/obj
+
+#Prevent compression of user manual
+override_dh_compress :
+ dh_compress -X.pdf
+
+override_dh_pysupport :
+ #Not needed, Python scripts are just for examples
+
+override_dh_builddeb:
+ dh_builddeb -- -Z xz
+
+get-orig-source:
+ . debian/get-orig-source
+
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