[med-svn] r7961 - in trunk/packages/rostlab/profphd-utils/trunk: . debian debian/source
Laszlo Kajan
lkajan-guest at alioth.debian.org
Tue Sep 27 16:21:18 UTC 2011
Author: lkajan-guest
Date: 2011-09-27 16:21:17 +0000 (Tue, 27 Sep 2011)
New Revision: 7961
Added:
trunk/packages/rostlab/profphd-utils/trunk/debian/
trunk/packages/rostlab/profphd-utils/trunk/debian/README.Debian
trunk/packages/rostlab/profphd-utils/trunk/debian/changelog
trunk/packages/rostlab/profphd-utils/trunk/debian/compat
trunk/packages/rostlab/profphd-utils/trunk/debian/control
trunk/packages/rostlab/profphd-utils/trunk/debian/copyright
trunk/packages/rostlab/profphd-utils/trunk/debian/patches/
trunk/packages/rostlab/profphd-utils/trunk/debian/profphd-utils.install
trunk/packages/rostlab/profphd-utils/trunk/debian/rules
trunk/packages/rostlab/profphd-utils/trunk/debian/source/
trunk/packages/rostlab/profphd-utils/trunk/debian/source/format
trunk/packages/rostlab/profphd-utils/trunk/debian/watch
Log:
profphd-utils ready for upload
Property changes on: trunk/packages/rostlab/profphd-utils/trunk/debian
___________________________________________________________________
Added: mergeWithUpstream
+ 1
Added: trunk/packages/rostlab/profphd-utils/trunk/debian/README.Debian
===================================================================
--- trunk/packages/rostlab/profphd-utils/trunk/debian/README.Debian (rev 0)
+++ trunk/packages/rostlab/profphd-utils/trunk/debian/README.Debian 2011-09-27 16:21:17 UTC (rev 7961)
@@ -0,0 +1,6 @@
+profphd-utils for Debian
+------------------------
+
+This package presents the binary utilities for profphd.
+
+ -- Laszlo Kajan <lkajan at rostlab.org> Fri, 18 Dec 2009 23:42:34 +0100
Added: trunk/packages/rostlab/profphd-utils/trunk/debian/changelog
===================================================================
--- trunk/packages/rostlab/profphd-utils/trunk/debian/changelog (rev 0)
+++ trunk/packages/rostlab/profphd-utils/trunk/debian/changelog 2011-09-27 16:21:17 UTC (rev 7961)
@@ -0,0 +1,45 @@
+profphd-utils (1.0.7-1) UNRELEASED; urgency=low
+
+ * Initial release in Debian (Closes: #643323)
+
+ -- Laszlo Kajan <lkajan at rostlab.org> Tue, 27 Sep 2011 10:08:18 +0200
+
+profphd-utils (1.0.6) unstable; urgency=low
+
+ * Debian native now
+
+ -- Laszlo Kajan <lkajan at rostlab.org> Mon, 28 Feb 2011 15:50:38 +0100
+
+profphd-utils (1.0.5)
+
+ * Introduced AM_FFLAGS; FFLAGS now can be used on the command line/ENV as expected
+
+ -- Laszlo Kajan <lkajan at rostlab.org> Thu, 01 Apr 2010 11:53:35 +0200
+
+profphd-utils (1.0.4)
+
+ * increased MAXCORE to 16777216 in filter_hssp.f in order to allow a big alignment to fit (DMD_HUMAN.hssp example)
+ * Made sequence names case sensitive for READ_MSF routine - solves bug with 3h4p_A and 3h4p_a chains mistaken for the same thing
+
+ -- Laszlo Kajan <lkajan at rostlab.org> Tue, 12 Jan 2010 12:17:03 +0100
+
+profphd-utils (1.0.3)
+
+ * Removed unnecessary directories; made not to install *.{LINUX,ALPHA,etc} files
+ * lib-sys-linux.f was duplicate of lib-sys-LINUX.f - lib-sys-linux.f removed
+ * Distribute only .LINUX version of lib-sys-*.f
+
+ -- Laszlo Kajan <lkajan at rostlab.org> Tue, 05 Jan 2010 23:18:07 +0100
+
+profphd-utils (1.0.2)
+
+ * Fixed uninitialized variables without -flocal-init-zero
+
+ -- Laszlo Kajan <lkajan at rostlab.org> Tue, 05 Jan 2010 23:18:07 +0100
+
+profphd-utils (1.0.1)
+
+ * Initial version
+
+ -- Laszlo Kajan <lkajan at rostlab.org> Fri, 18 Dec 2009 23:23:21 +0100
+
Added: trunk/packages/rostlab/profphd-utils/trunk/debian/compat
===================================================================
--- trunk/packages/rostlab/profphd-utils/trunk/debian/compat (rev 0)
+++ trunk/packages/rostlab/profphd-utils/trunk/debian/compat 2011-09-27 16:21:17 UTC (rev 7961)
@@ -0,0 +1 @@
+7
Added: trunk/packages/rostlab/profphd-utils/trunk/debian/control
===================================================================
--- trunk/packages/rostlab/profphd-utils/trunk/debian/control (rev 0)
+++ trunk/packages/rostlab/profphd-utils/trunk/debian/control 2011-09-27 16:21:17 UTC (rev 7961)
@@ -0,0 +1,20 @@
+Source: profphd-utils
+Section: science
+Priority: extra
+Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+Uploaders: Laszlo Kajan <lkajan at rostlab.org>
+Build-Depends: cdbs, debhelper (>= 7.0.50~), gfortran
+Standards-Version: 3.9.2
+Vcs-Svn: svn://svn.debian.org/debian-med/trunk/packages/rostlab/profphd-utils/trunk/
+Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/rostlab/profphd-utils/trunk/
+DM-Upload-Allowed: yes
+Homepage: http://www.rostlab.org/
+
+Package: profphd-utils
+Architecture: any
+Depends: ${shlibs:Depends}, ${misc:Depends}
+Recommends: profphd
+Description: profphd helper utilities convert_seq and filter_hssp
+ The package provides the following binary utilities: convert_seq, filter_hssp.
+ These are used by prof from the profphd package: a secondary structure,
+ accessibility and transmembrane helix predictor from Burkhard Rost.
Added: trunk/packages/rostlab/profphd-utils/trunk/debian/copyright
===================================================================
--- trunk/packages/rostlab/profphd-utils/trunk/debian/copyright (rev 0)
+++ trunk/packages/rostlab/profphd-utils/trunk/debian/copyright 2011-09-27 16:21:17 UTC (rev 7961)
@@ -0,0 +1,62 @@
+This package was debianized by Laszlo Kajan <lkajan at rostlab.org> on
+
+ Fri, 18 Dec 2009 23:42:34 +0100.
+
+It was downloaded from:
+
+ ftp://rostlab.org/profphd-utils/
+
+Upstream Authors:
+
+ Reinhard Schneider <schneider at lion-ag.de>
+
+ Ulrike Goebel
+
+ C. Sander
+
+ Burkhard Rost <rost at rostlab.org>
+
+ Bug fixes and enhancements by:
+
+ Laszlo Kajan <lkajan at rostlab.org> and
+
+ Guy Yachdav <gyachdav at rostlab.org>
+
+Copyright:
+
+ Copyright 1998-2011 by Burkhard Rost <rost at rostlab.org> EMBL, CUBIC (Columbia University, NY, USA) and LION Biosciences (Heidelberg, DE)
+
+ Copyright 1994 by C. Sander MPIMF (Heidelberg, DE)
+
+ Copyright 2009-2011 by Guy Yachdav <gyachdav at rostlab.org> CUBIC (Columbia University, NY, USA), Technical University Munich (Munich, DE), Biosof LLC (USA)
+
+ Copyright 2009-2011 by Laszlo Kajan <lkajan at rostlab.org> Technical University Munich (Munich, DE)
+
+ Copyright 1988,1991,1997 by Reinhard Schneider LION Biosciences (Heidelberg, DE)
+
+ Copyright 1997 by Ulrike Goebel LION Biosciences (Heidelberg, DE)
+
+License:
+
+ This package is free software; you can redistribute it and/or modify
+ it under the terms of the GNU General Public License as published by
+ the Free Software Foundation; either version 2 of the License, or
+ (at your option) any later version.
+
+ This package is distributed in the hope that it will be useful,
+ but WITHOUT ANY WARRANTY; without even the implied warranty of
+ MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ GNU General Public License for more details.
+
+ You should have received a copy of the GNU General Public License
+ along with this package; if not, write to the Free Software
+ Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA
+
+On Debian systems, the complete text of the GNU General
+Public License version 2 can be found in `/usr/share/common-licenses/GPL-2'.
+
+The Debian packaging is:
+
+ (C) 2009, Laszlo Kajan <lkajan at rostlab.org>
+
+and is licensed under the GPL, see above.
Added: trunk/packages/rostlab/profphd-utils/trunk/debian/profphd-utils.install
===================================================================
--- trunk/packages/rostlab/profphd-utils/trunk/debian/profphd-utils.install (rev 0)
+++ trunk/packages/rostlab/profphd-utils/trunk/debian/profphd-utils.install 2011-09-27 16:21:17 UTC (rev 7961)
@@ -0,0 +1 @@
+usr/*
Added: trunk/packages/rostlab/profphd-utils/trunk/debian/rules
===================================================================
--- trunk/packages/rostlab/profphd-utils/trunk/debian/rules (rev 0)
+++ trunk/packages/rostlab/profphd-utils/trunk/debian/rules 2011-09-27 16:21:17 UTC (rev 7961)
@@ -0,0 +1,8 @@
+#!/usr/bin/make -f
+
+include /usr/share/cdbs/1/rules/debhelper.mk
+include /usr/share/cdbs/1/class/makefile.mk
+
+# Add here any variable or target overrides you need.
+DEB_MAKE_BUILD_TARGET = prefix=/usr all
+DEB_MAKE_INSTALL_TARGET = prefix=/usr DESTDIR=$(CURDIR)/debian/tmp/ install
Property changes on: trunk/packages/rostlab/profphd-utils/trunk/debian/rules
___________________________________________________________________
Added: svn:executable
+ *
Added: trunk/packages/rostlab/profphd-utils/trunk/debian/source/format
===================================================================
--- trunk/packages/rostlab/profphd-utils/trunk/debian/source/format (rev 0)
+++ trunk/packages/rostlab/profphd-utils/trunk/debian/source/format 2011-09-27 16:21:17 UTC (rev 7961)
@@ -0,0 +1 @@
+3.0 (quilt)
Added: trunk/packages/rostlab/profphd-utils/trunk/debian/watch
===================================================================
--- trunk/packages/rostlab/profphd-utils/trunk/debian/watch (rev 0)
+++ trunk/packages/rostlab/profphd-utils/trunk/debian/watch 2011-09-27 16:21:17 UTC (rev 7961)
@@ -0,0 +1,23 @@
+# Example watch control file for uscan
+# Rename this file to "watch" and then you can run the "uscan" command
+# to check for upstream updates and more.
+# See uscan(1) for format
+
+# Compulsory line, this is a version 3 file
+version=3
+
+# Uncomment to examine a Webpage
+# <Webpage URL> <string match>
+#http://www.example.com/downloads.php libzerg-perl-(.*)\.tar\.gz
+
+# Uncomment to examine a Webserver directory
+#http://www.example.com/pub/libzerg-perl-(.*)\.tar\.gz
+
+# Uncommment to examine a FTP server
+ftp://rostlab.org/profphd/profphd-utils-([0-9.]+)\.tar\.gz debian uupdate
+
+# Uncomment to find new files on sourceforge, for devscripts >= 2.9
+# http://sf.net/libzerg-perl/libzerg-perl-(.*)\.tar\.gz
+
+# Uncomment to find new files on GooglePages
+#http://code.google.com/p/libzerg/downloads/list libzerg-perl[_-](.*)\.tar\.gz
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