[med-svn] r7965 - trunk/packages/rostlab/profphd/trunk/debian

[Laszlo Kajan]

Author: lkajan-guest
Date: 2011-09-28 08:48:52 +0000 (Wed, 28 Sep 2011)
New Revision: 7965

Modified:
   trunk/packages/rostlab/profphd/trunk/debian/control
Log:
new long description in debian/control; changed homepage to predictprotein.org

Modified: trunk/packages/rostlab/profphd/trunk/debian/control
===================================================================
--- trunk/packages/rostlab/profphd/trunk/debian/control	2011-09-27 16:47:05 UTC (rev 7964)
+++ trunk/packages/rostlab/profphd/trunk/debian/control	2011-09-28 08:48:52 UTC (rev 7965)
@@ -8,7 +8,7 @@
 Vcs-Svn: svn://svn.debian.org/debian-med/trunk/packages/rostlab/profphd/trunk/
 Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/rostlab/profphd/trunk/
 DM-Upload-Allowed: yes
-Homepage: http://www.rostlab.org/
+Homepage: http://predictprotein.org/
 
 Package: profphd
 Architecture: all
@@ -16,11 +16,20 @@
 Replaces: profphd-data, profphd-perl
 Conflicts: profphd-data, profphd-perl
 Description: secondary structure and solvent accessibility predictor
- profphd predicts - with high accuracy - protein -
+ This package provides prof(1), the protein secondary structure, accessibility
+ and transmembrane helix predictor from Burkhard Rost.  Prediction is either
+ done from protein sequence alone or from an alignment - the latter should be
+ used for optimal performance.
  .
- * secondary structure
- * solvent accessibility
- * transmembrane helices
+ How well does prof(1) perform?
  .
- Prediction is either done from protein sequence alone or from an alignment -
- the latter should be used for optimal performance.
+  * Secondary structure is predicted at an expected average accuracy > 72% for
+    the three states helix, strand and loop.
+ .
+  * Solvent accessibility is predicted at a correlation coefficient
+    (correlation between experimentally observed and predicted relative
+    solvent accessibility) of 0.54
+ .
+  * Transmembrane helix prediction has an expected per-residue accuracy of
+    about 95%.  The number of false positives, i.e., transmembrane helices
+    predicted in globular proteins, is about 2%.