[med-svn] r7970 - in trunk/packages/rostlab/librg-utils-perl/trunk: . debian debian/source
Laszlo Kajan
lkajan-guest at alioth.debian.org
Wed Sep 28 13:58:03 UTC 2011
Author: lkajan-guest
Date: 2011-09-28 13:58:03 +0000 (Wed, 28 Sep 2011)
New Revision: 7970
Added:
trunk/packages/rostlab/librg-utils-perl/trunk/debian/
trunk/packages/rostlab/librg-utils-perl/trunk/debian/README.Debian
trunk/packages/rostlab/librg-utils-perl/trunk/debian/changelog
trunk/packages/rostlab/librg-utils-perl/trunk/debian/compat
trunk/packages/rostlab/librg-utils-perl/trunk/debian/control
trunk/packages/rostlab/librg-utils-perl/trunk/debian/copyright
trunk/packages/rostlab/librg-utils-perl/trunk/debian/patches/
trunk/packages/rostlab/librg-utils-perl/trunk/debian/rules
trunk/packages/rostlab/librg-utils-perl/trunk/debian/source/
trunk/packages/rostlab/librg-utils-perl/trunk/debian/source/format
trunk/packages/rostlab/librg-utils-perl/trunk/debian/watch
Log:
this version works on debian-testing with prof - ready for upload
Property changes on: trunk/packages/rostlab/librg-utils-perl/trunk/debian
___________________________________________________________________
Added: mergeWithUpstream
+ 1
Added: trunk/packages/rostlab/librg-utils-perl/trunk/debian/README.Debian
===================================================================
--- trunk/packages/rostlab/librg-utils-perl/trunk/debian/README.Debian (rev 0)
+++ trunk/packages/rostlab/librg-utils-perl/trunk/debian/README.Debian 2011-09-28 13:58:03 UTC (rev 7970)
@@ -0,0 +1,8 @@
+librg-utils-perl for Debian
+---------------------------
+
+This package presents perl utilities that are used by predictors from the Rost
+Lab, for example profphd.
+
+ -- Laszlo Kajan <lkajan at rostlab.org> Wed, 28 Sep 2011 11:18:39 +0200
+
Added: trunk/packages/rostlab/librg-utils-perl/trunk/debian/changelog
===================================================================
--- trunk/packages/rostlab/librg-utils-perl/trunk/debian/changelog (rev 0)
+++ trunk/packages/rostlab/librg-utils-perl/trunk/debian/changelog 2011-09-28 13:58:03 UTC (rev 7970)
@@ -0,0 +1,13 @@
+librg-utils-perl (1.0.42-1) UNRELEASED; urgency=low
+
+ * Initial release (Closes: #643630)
+ * New upstream release
+
+ -- Laszlo Kajan <lkajan at rostlab.org> Wed, 28 Sep 2011 15:10:22 +0200
+
+librg-utils-perl (1.0.41-1) UNRELEASED; urgency=low
+
+ * New upstream release
+
+ -- Laszlo Kajan <lkajan at rostlab.org> Wed, 28 Sep 2011 11:15:17 +0200
+
Added: trunk/packages/rostlab/librg-utils-perl/trunk/debian/compat
===================================================================
--- trunk/packages/rostlab/librg-utils-perl/trunk/debian/compat (rev 0)
+++ trunk/packages/rostlab/librg-utils-perl/trunk/debian/compat 2011-09-28 13:58:03 UTC (rev 7970)
@@ -0,0 +1 @@
+7
Added: trunk/packages/rostlab/librg-utils-perl/trunk/debian/control
===================================================================
--- trunk/packages/rostlab/librg-utils-perl/trunk/debian/control (rev 0)
+++ trunk/packages/rostlab/librg-utils-perl/trunk/debian/control 2011-09-28 13:58:03 UTC (rev 7970)
@@ -0,0 +1,24 @@
+Source: librg-utils-perl
+Section: perl
+Priority: extra
+Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+Uploaders: Guy Yachdav <gyachdav at rostlab.org>, Laszlo Kajan <lkajan at rostlab.org>
+Build-Depends: debhelper (>= 7), perl (>= 5.8.0-7)
+Standards-Version: 3.9.2
+Vcs-Svn: svn://svn.debian.org/debian-med/trunk/packages/rostlab/librg-utils-perl/trunk/
+Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/rostlab/librg-utils-perl/trunk/
+DM-Upload-Allowed: yes
+Homepage: http://predictprotein.org/
+
+Package: librg-utils-perl
+Architecture: all
+Depends: ${perl:Depends}, ${misc:Depends}, liblist-moreutils-perl, profphd-utils
+Description: parsers and format conversion utilities used by (e.g.) profphd
+ This package contains tools like:
+ .
+ * blast2saf.pl, blastpgp_to_saf.pl, conv_hssp2saf.pl, copf.pl, hssp_filter.pl,
+ safFilterRed.pl
+ .
+ and modules like:
+ .
+ * RG:Utils::Conv_hssp2saf RG:Utils::Copf RG:Utils::Hssp_filter
Added: trunk/packages/rostlab/librg-utils-perl/trunk/debian/copyright
===================================================================
--- trunk/packages/rostlab/librg-utils-perl/trunk/debian/copyright (rev 0)
+++ trunk/packages/rostlab/librg-utils-perl/trunk/debian/copyright 2011-09-28 13:58:03 UTC (rev 7970)
@@ -0,0 +1,32 @@
+This package was debianized by Guy Yachdav <gyachdav at rostlab.org> on
+Wed, 30 Dec 2009 12:28:46 +0100
+
+Upstream Author:
+
+ Burkhard Rost <rost at rostlab.org>
+
+Copyright:
+
+ 2010, Burkhard Rost
+
+License:
+
+ This package is free software; you can redistribute it and/or modify
+ it under the terms of the GNU General Public License as published by
+ the Free Software Foundation; either version 2 of the License, or
+ (at your option) any later version.
+
+ This package is distributed in the hope that it will be useful,
+ but WITHOUT ANY WARRANTY; without even the implied warranty of
+ MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ GNU General Public License for more details.
+
+ You should have received a copy of the GNU General Public License
+ along with this package; if not, write to the Free Software
+ Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA
+
+On Debian systems, the complete text of the GNU General
+Public License can be found in `/usr/share/common-licenses/GPL'.
+
+The Debian packaging is (C) 2009, Guy Yachdav <gyachdav at rostlab.org> and
+is licensed under the GPL, see above.
Added: trunk/packages/rostlab/librg-utils-perl/trunk/debian/rules
===================================================================
--- trunk/packages/rostlab/librg-utils-perl/trunk/debian/rules (rev 0)
+++ trunk/packages/rostlab/librg-utils-perl/trunk/debian/rules 2011-09-28 13:58:03 UTC (rev 7970)
@@ -0,0 +1,107 @@
+#!/usr/bin/make -f
+# -*- makefile -*-
+# Sample debian/rules that uses debhelper.
+# This file was originally written by Joey Hess and Craig Small.
+# As a special exception, when this file is copied by dh-make into a
+# dh-make output file, you may use that output file without restriction.
+# This special exception was added by Craig Small in version 0.37 of dh-make.
+
+# Uncomment this to turn on verbose mode.
+#export DH_VERBOSE=1
+
+
+# These are used for cross-compiling and for saving the configure script
+# from having to guess our platform (since we know it already)
+DEB_HOST_GNU_TYPE ?= $(shell dpkg-architecture -qDEB_HOST_GNU_TYPE)
+DEB_BUILD_GNU_TYPE ?= $(shell dpkg-architecture -qDEB_BUILD_GNU_TYPE)
+ifneq ($(DEB_HOST_GNU_TYPE),$(DEB_BUILD_GNU_TYPE))
+CROSS= --build $(DEB_BUILD_GNU_TYPE) --host $(DEB_HOST_GNU_TYPE)
+else
+CROSS= --build $(DEB_BUILD_GNU_TYPE)
+endif
+
+
+
+config.status: configure
+ dh_testdir
+ # Add here commands to configure the package.
+ifneq "$(wildcard /usr/share/misc/config.sub)" ""
+ cp -f /usr/share/misc/config.sub config.sub
+endif
+ifneq "$(wildcard /usr/share/misc/config.guess)" ""
+ cp -f /usr/share/misc/config.guess config.guess
+endif
+ ./configure $(CROSS) --prefix=/usr --mandir=\$${prefix}/share/man --infodir=\$${prefix}/share/info --sysconfdir=/etc CFLAGS="$(CFLAGS)" CXXFLAGS="$(CXXFLAGS)" LDFLAGS="-Wl,-z,defs"
+
+
+build: build-arch build-indep
+build-arch: build-stamp
+build-indep: build-stamp
+
+build-stamp: config.status
+ dh_testdir
+
+ # Add here commands to compile the package.
+ $(MAKE)
+ #docbook-to-man debian/librg-utils-perl.sgml > librg-utils-perl.1
+
+ touch $@
+
+clean:
+ dh_testdir
+ dh_testroot
+ rm -f build-stamp
+
+ # Add here commands to clean up after the build process.
+ [ ! -f Makefile ] || $(MAKE) distclean
+ rm -f config.sub config.guess
+
+ dh_clean
+
+install: build
+ dh_testdir
+ dh_testroot
+ dh_prep
+ dh_installdirs
+
+ # Add here commands to install the package into debian/librg-utils-perl.
+ $(MAKE) DESTDIR=$(CURDIR)/debian/librg-utils-perl install
+
+
+# Build architecture-independent files here.
+binary-indep: build install
+ dh_testdir
+ dh_testroot
+ dh_installchangelogs -XChangeLog
+ dh_installdocs
+# dh_lintian
+ dh_installexamples
+# dh_install
+# dh_installmenu
+# dh_installdebconf
+# dh_installlogrotate
+# dh_installemacsen
+# dh_installpam
+# dh_installmime
+# dh_python
+# dh_installinit
+# dh_installcron
+# dh_installinfo
+ dh_installman
+ dh_link
+# dh_strip
+ dh_compress
+ dh_fixperms
+ dh_perl
+# dh_makeshlibs
+ dh_installdeb
+ dh_shlibdeps
+ dh_gencontrol
+ dh_md5sums
+ dh_builddeb
+
+# Build architecture-dependent files here.
+binary-arch: build install
+
+binary: binary-indep binary-arch
+.PHONY: build clean binary-indep binary-arch binary install
Property changes on: trunk/packages/rostlab/librg-utils-perl/trunk/debian/rules
___________________________________________________________________
Added: svn:executable
+ *
Added: trunk/packages/rostlab/librg-utils-perl/trunk/debian/source/format
===================================================================
--- trunk/packages/rostlab/librg-utils-perl/trunk/debian/source/format (rev 0)
+++ trunk/packages/rostlab/librg-utils-perl/trunk/debian/source/format 2011-09-28 13:58:03 UTC (rev 7970)
@@ -0,0 +1 @@
+3.0 (quilt)
Added: trunk/packages/rostlab/librg-utils-perl/trunk/debian/watch
===================================================================
--- trunk/packages/rostlab/librg-utils-perl/trunk/debian/watch (rev 0)
+++ trunk/packages/rostlab/librg-utils-perl/trunk/debian/watch 2011-09-28 13:58:03 UTC (rev 7970)
@@ -0,0 +1,23 @@
+# Example watch control file for uscan
+# Rename this file to "watch" and then you can run the "uscan" command
+# to check for upstream updates and more.
+# See uscan(1) for format
+
+# Compulsory line, this is a version 3 file
+version=3
+
+# Uncomment to examine a Webpage
+# <Webpage URL> <string match>
+#http://www.example.com/downloads.php libzerg-perl-(.*)\.tar\.gz
+
+# Uncomment to examine a Webserver directory
+#http://www.example.com/pub/libzerg-perl-(.*)\.tar\.gz
+
+# Uncommment to examine a FTP server
+ftp://rostlab.org/librg-utils-perl/librg-utils-perl-([0-9.]+)\.tar\.gz debian uupdate
+
+# Uncomment to find new files on sourceforge, for devscripts >= 2.9
+# http://sf.net/libzerg-perl/libzerg-perl-(.*)\.tar\.gz
+
+# Uncomment to find new files on GooglePages
+#http://code.google.com/p/libzerg/downloads/list libzerg-perl[_-](.*)\.tar\.gz
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