[med-svn] r10299 - trunk/packages/probcons/trunk/debian

Tue Apr 3 20:44:26 UTC 2012

Author: tille
Date: 2012-04-03 20:44:25 +0000 (Tue, 03 Apr 2012)
New Revision: 10299

Added:
   trunk/packages/probcons/trunk/debian/copyright
Modified:
   trunk/packages/probcons/trunk/debian/changelog
   trunk/packages/probcons/trunk/debian/control
   trunk/packages/probcons/trunk/debian/upstream
Log:
Uhmm, this package had no copyright file at all!


Modified: trunk/packages/probcons/trunk/debian/changelog
===================================================================

--- trunk/packages/probcons/trunk/debian/changelog	2012-04-03 20:35:38 UTC (rev 10298)
+++ trunk/packages/probcons/trunk/debian/changelog	2012-04-03 20:44:25 UTC (rev 10299)
@@ -1,3 +1,17 @@
+probcons (1.12-9) UNRELEASED; urgency=low
+
+  [ Charles Plessy ]
+  * renamed debian/upstream-metadata.yaml to debian/upstream
+
+  [ Andreas Tille ]
+  * debian/upstream: Moved DOI+PMID to references
+  * debian/control:
+     - Standards-Version: 3.9.3 (no changes needed)
+     - Fixed Vcs fields
+  * debian/copyright: Uhmm, this package had no copyright file at all!
+
+ -- Andreas Tille <tille at debian.org>  Tue, 03 Apr 2012 22:19:58 +0200
+
 probcons (1.12-8) unstable; urgency=low
 
   * Standards-Version: 3.9.2 (no changes needed)

Modified: trunk/packages/probcons/trunk/debian/control
===================================================================
--- trunk/packages/probcons/trunk/debian/control	2012-04-03 20:35:38 UTC (rev 10298)
+++ trunk/packages/probcons/trunk/debian/control	2012-04-03 20:44:25 UTC (rev 10299)
@@ -5,9 +5,9 @@
 DM-Upload-Allowed: yes
 Uploaders: Charles Plessy <plessy at debian.org>, Andreas Tille <tille at debian.org>
 Build-Depends: debhelper (>= 8), quilt
-Standards-Version: 3.9.2
-Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/probcons/trunk/?rev=0&sc=0
-Vcs-Svn: svn://svn.debian.org/svn/debian-med/trunk/packages/probcons/trunk/
+Standards-Version: 3.9.3
+Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/probcons/trunk/
+Vcs-Svn: svn://svn.debian.org/debian-med/trunk/packages/probcons/trunk/
 Homepage: http://probcons.stanford.edu/
 
 Package: probcons

Added: trunk/packages/probcons/trunk/debian/copyright
===================================================================
--- trunk/packages/probcons/trunk/debian/copyright	                        (rev 0)
+++ trunk/packages/probcons/trunk/debian/copyright	2012-04-03 20:44:25 UTC (rev 10299)
@@ -0,0 +1,50 @@
+Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
+Upstream-Name: ProbCons
+Source: http://probcons.stanford.edu/download.html
+
+Files: *
+Copyright: 2005-2009 Arun S Konagurthu <arun at bx.psu.edu>
+                     The University of Melbourne.
+License: PD
+ PROBCONS has been made  freely  available  as  PUBLIC  DOMAIN
+ software and hence is not subject to copyright in the  United
+ States.  This system and/or any portion of  the  source  code
+ may be used, modified, or redistributed without restrictions.
+ PROBCONS is distributed WITHOUT WARRANTY, express or implied.
+ The authors accept NO LEGAL LIABILITY OR  RESPONSIBILITY  for
+ loss due to reliance on the program.
+
+Files: debian/*
+Copyright: 2006-2011 Charles Plessy <plessy at debian.org>
+           2010-2012 Andreas Tille <tille at debian.org>
+License: BSD
+ Copyright (c) The Regents of the University of California.
+ All rights reserved.
+ .
+ Redistribution and use in source and binary forms, with or without
+ modification, are permitted provided that the following conditions
+ are met:
+ 1. Redistributions of source code must retain the above copyright
+    notice, this list of conditions and the following disclaimer.
+ 2. Redistributions in binary form must reproduce the above copyright
+    notice, this list of conditions and the following disclaimer in the
+    documentation and/or other materials provided with the distribution.
+ 3. Neither the name of the University nor the names of its contributors
+    may be used to endorse or promote products derived from this software
+    without specific prior written permission.
+ .
+ THIS SOFTWARE IS PROVIDED BY THE REGENTS AND CONTRIBUTORS ``AS IS'' AND
+ ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
+ IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
+ ARE DISCLAIMED.  IN NO EVENT SHALL THE REGENTS OR CONTRIBUTORS BE LIABLE
+ FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL
+ DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS
+ OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION)
+ HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT
+ LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY
+ OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF
+ SUCH DAMAGE.
+ .
+ On Debian systems you can find a copy of BSD license text at
+ /usr/share/common-licenses/BSD.
+

Modified: trunk/packages/probcons/trunk/debian/upstream
===================================================================
--- trunk/packages/probcons/trunk/debian/upstream	2012-04-03 20:35:38 UTC (rev 10298)
+++ trunk/packages/probcons/trunk/debian/upstream	2012-04-03 20:44:25 UTC (rev 10299)
@@ -1,8 +1,6 @@
 Contact: Chuong Do <chuongdo at cs.stanford.edu>
-Reference-DOI: 10.1101/gr.2821705
 Homepage: http://probcons.stanford.edu/
 Name: ProbCons
-Reference-PMID: 15687296
 Reference:
  author: Do, Chuong B. and Mahabhashyam, Mahathi S.P. and Brudno, Michael and Batzoglou, Serafim
  title: >
@@ -12,6 +10,8 @@
  number: 2
  pages: 330-340
  year: 2005
+ DOI: 10.1101/gr.2821705
+ PMID: 15687296
  URL: http://genome.cshlp.org/content/15/2/330.abstract
  eprint: http://genome.cshlp.org/content/15/2/330.full.pdf+html
 Watch: http://probcons.stanford.edu/download.html probcons_v(\d+)_(\d+)\.tar\.gz


