[med-svn] r10315 - in trunk/packages/hhsuite/trunk/debian: . patches

[Laszlo Kajan]

Author: lkajan-guest
Date: 2012-04-04 11:50:49 +0000 (Wed, 04 Apr 2012)
New Revision: 10315

Modified:
   trunk/packages/hhsuite/trunk/debian/changelog
   trunk/packages/hhsuite/trunk/debian/patches/Makefile
Log:
2.0.13-2: Added #include <unistd.h> to src/hhsearch.C in order to fix compilation issue with g++-4.7. (Closes: #667201)

Modified: trunk/packages/hhsuite/trunk/debian/changelog
===================================================================
--- trunk/packages/hhsuite/trunk/debian/changelog	2012-04-04 10:56:23 UTC (rev 10314)
+++ trunk/packages/hhsuite/trunk/debian/changelog	2012-04-04 11:50:49 UTC (rev 10315)
@@ -1,10 +1,14 @@
-hhsuite (2.0.13-2) UNRELEASED; urgency=low
+hhsuite (2.0.13-2) unstable; urgency=low
 
-  * debian/upstream:
+  * [Andreas Tille <tille at debian.org>]
+    debian/upstream:
      - it is (now) possible to support more than one citation
      - more verbose citation information
+  * [Laszlo Kajan <lkajan at rostlab.org]
+    Added #include <unistd.h> to src/hhsearch.C in order to fix compilation
+    issue with g++-4.7. (Closes: #667201)
 
- -- Andreas Tille <tille at debian.org>  Mon, 02 Apr 2012 09:39:54 +0200
+ -- Laszlo Kajan <lkajan at rostlab.org>  Wed, 04 Apr 2012 13:45:49 +0200
 
 hhsuite (2.0.13-1) unstable; urgency=low
 

Modified: trunk/packages/hhsuite/trunk/debian/patches/Makefile
===================================================================
--- trunk/packages/hhsuite/trunk/debian/patches/Makefile	2012-04-04 10:56:23 UTC (rev 10314)
+++ trunk/packages/hhsuite/trunk/debian/patches/Makefile	2012-04-04 11:50:49 UTC (rev 10315)
@@ -194,7 +194,15 @@
  
 --- a/src/hhsearch.C
 +++ b/src/hhsearch.C
-@@ -326,7 +326,7 @@
+@@ -40,6 +40,7 @@
+ #include <float.h>    // FLT_MIN
+ #include <ctype.h>    // islower, isdigit etc
+ #include <time.h>     // clock_gettime etc. (in realtime library (-lrt compiler option))
++#include <unistd.h>
+ #include <errno.h>    // perror()
+ #include <cassert>
+ #include <stdexcept>
+@@ -326,7 +327,7 @@
    printf(" -pcc  [0,3]    extinction exponent for tau(Neff)  (def=%-.1f)     \n",par.pcc);
    printf(" -pcw  [0,3]    weight of pos-specificity for pcs  (def=%-.1f)      \n",par.pcw);
    // HHsearch option should be the same as HHblits option!!