[med-svn] r10402 - in trunk/packages/dssp/trunk: . debian debian/patches debian/source
Maarten Hekkelman
mhekkel-guest at alioth.debian.org
Wed Apr 18 11:10:22 UTC 2012
Author: mhekkel-guest
Date: 2012-04-18 11:10:22 +0000 (Wed, 18 Apr 2012)
New Revision: 10402
Added:
trunk/packages/dssp/trunk/debian/
trunk/packages/dssp/trunk/debian/changelog
trunk/packages/dssp/trunk/debian/compat
trunk/packages/dssp/trunk/debian/control
trunk/packages/dssp/trunk/debian/copyright
trunk/packages/dssp/trunk/debian/patches/
trunk/packages/dssp/trunk/debian/patches/makefile
trunk/packages/dssp/trunk/debian/patches/series
trunk/packages/dssp/trunk/debian/rules
trunk/packages/dssp/trunk/debian/source/
trunk/packages/dssp/trunk/debian/source/format
trunk/packages/dssp/trunk/debian/watch
Log:
import
Added: trunk/packages/dssp/trunk/debian/changelog
===================================================================
--- trunk/packages/dssp/trunk/debian/changelog (rev 0)
+++ trunk/packages/dssp/trunk/debian/changelog 2012-04-18 11:10:22 UTC (rev 10402)
@@ -0,0 +1,5 @@
+dssp (2.0.4-1) UNRELEASED; urgency=low
+
+ * Initial release. (Closes: #XXXXXX)
+
+ -- Maarten L. Hekkelman <maarten at mrs> Wed, 18 Apr 2012 11:09:02 +0200
Added: trunk/packages/dssp/trunk/debian/compat
===================================================================
--- trunk/packages/dssp/trunk/debian/compat (rev 0)
+++ trunk/packages/dssp/trunk/debian/compat 2012-04-18 11:10:22 UTC (rev 10402)
@@ -0,0 +1 @@
+7
Added: trunk/packages/dssp/trunk/debian/control
===================================================================
--- trunk/packages/dssp/trunk/debian/control (rev 0)
+++ trunk/packages/dssp/trunk/debian/control 2012-04-18 11:10:22 UTC (rev 10402)
@@ -0,0 +1,19 @@
+Source: dssp
+Priority: optional
+Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+Build-Depends: debhelper (>= 7.0.50~),
+ libboost1.46-dev (>= 1.46.1),
+ libboost-filesystem1.46-dev (>= 1.46.1),
+ libboost-iostreams1.46-dev (>= 1.46.1),
+ libboost-program-options1.46-dev (>= 1.46.1),
+ libboost-system1.46-dev (>= 1.46.1),
+ libboost-thread1.46-dev (>= 1.46.1)
+Standards-Version: 3.9.1
+Section: science
+Homepage: http://www.cmbi.ru.nl/dssp.html
+
+Package: dssp
+Architecture: any
+Depends: ${misc:Depends}, ${shlibs:Depends}
+Description: DSSP is an application you use to calculate the
+ secondary structure of a protein.
Added: trunk/packages/dssp/trunk/debian/copyright
===================================================================
--- trunk/packages/dssp/trunk/debian/copyright (rev 0)
+++ trunk/packages/dssp/trunk/debian/copyright 2012-04-18 11:10:22 UTC (rev 10402)
@@ -0,0 +1,37 @@
+Format: http://dep.debian.net/deps/dep5/
+Upstream-Name: dssp
+Upstream-Contact: Maarten L. Hekkelman <m.hekkelman at cmbi.ru.nl>
+Source: http://www.cmbi.ru.nl/dssp/
+
+Files: *
+Copyright: © 2009-2012, Maarten L. Hekkelman <m.hekkelman at cmbi.ru.nl>
+License: Boost-1.0
+
+Files: debian/*
+Copyright: © 2012, Maarten L. Hekkelman <m.hekkelman at cmbi.ru.nl>
+License: Boost-1.0
+
+License: Boost-1.0
+ Boost Software License - Version 1.0 - August 17th, 2003
+ .
+ Permission is hereby granted, free of charge, to any person or organization
+ obtaining a copy of the software and accompanying documentation covered by
+ this license (the "Software") to use, reproduce, display, distribute,
+ execute, and transmit the Software, and to prepare derivative works of the
+ Software, and to permit third-parties to whom the Software is furnished to
+ do so, all subject to the following:
+ .
+ The copyright notices in the Software and this entire statement, including
+ the above license grant, this restriction and the following disclaimer,
+ must be included in all copies of the Software, in whole or in part, and
+ all derivative works of the Software, unless such copies or derivative
+ works are solely in the form of machine-executable object code generated by
+ a source language processor.
+ .
+ THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
+ IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
+ FITNESS FOR A PARTICULAR PURPOSE, TITLE AND NON-INFRINGEMENT. IN NO EVENT
+ SHALL THE COPYRIGHT HOLDERS OR ANYONE DISTRIBUTING THE SOFTWARE BE LIABLE
+ FOR ANY DAMAGES OR OTHER LIABILITY, WHETHER IN CONTRACT, TORT OR OTHERWISE,
+ ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER
+ DEALINGS IN THE SOFTWARE.
Added: trunk/packages/dssp/trunk/debian/patches/makefile
===================================================================
--- trunk/packages/dssp/trunk/debian/patches/makefile (rev 0)
+++ trunk/packages/dssp/trunk/debian/patches/makefile 2012-04-18 11:10:22 UTC (rev 10402)
@@ -0,0 +1,66 @@
+--- a/makefile
++++ b/makefile
+@@ -11,23 +11,19 @@
+
+ firstTarget: mkdssp
+
+-include make.config
+-
+ VERSION = 2.0.4
+
+-DEST_DIR ?= /usr/local/
+-LIB_DIR = $(BOOST_LIB_DIR)
+-INC_DIR = $(BOOST_INC_DIR)
+-MAN_DIR = $(DEST_DIR)man/man1/
++BIN_DIR = $(DESTDIR)/usr/bin
++MAN_DIR = $(DESTDIR)/usr/share/man/man1
+
+-BOOST_LIBS = thread regex filesystem program_options date_time iostreams math_c99 system
+-LIBS = $(BOOST_LIBS:%=boost_%$(BOOST_LIB_SUFFIX)) z bz2
++BOOST_LIBS = thread filesystem program_options iostreams system
++LIBS = $(BOOST_LIBS:%=boost_%)
+
+ DEFINES = USE_COMPRESSION LINUX VERSION='"$(VERSION)"'
+ CC = c++
+
+-CFLAGS = $(INC_DIR:%=-I%) -iquote src -g -Wall -Wno-multichar -pthread
+-LDOPTS = $(LIB_DIR:%=-L%) $(LIBS:%=-l%) -g -pthread
++CFLAGS += -iquote src -g -Wall -Wno-multichar -pthread
++LDOPTS += $(LIBS:%=-l%) -g -pthread
+
+ OBJ_DIR = obj
+
+@@ -49,7 +45,8 @@
+
+ mkdssp: $(OBJECTS)
+ @ echo linking $@
+- @ $(CC) -static -o $@ $^ $(LDOPTS)
++ @ $(CC) -o $@ $^ $(LDOPTS)
++ @ strip $@
+ @ echo OK
+
+ include $(OBJECTS:%.o=%.d)
+@@ -65,8 +62,9 @@
+ rm -rf $(OBJ_DIR)/* mkdssp
+
+ install: mkdssp
+- sudo install -m 755 mkdssp $(DEST_DIR)bin/mkdssp
+- sudo install doc/mkdssp.1 $(MAN_DIR)mkdssp.1
++ install -d $(BIN_DIR) $(MAN_DIR)
++ install -m 755 mkdssp $(BIN_DIR)/mkdssp
++ install doc/mkdssp.1 $(MAN_DIR)/mkdssp.1
+
+ dist: $(OBJECTS)
+ @ rm -rf $(DIST_NAME)
+@@ -81,11 +79,3 @@
+ @ cp doc/mkdssp.1 $(DIST_NAME)/doc/mkdssp.1
+ tar czf $(DIST_NAME).tgz $(DIST_NAME)
+ cp $(DIST_NAME).tgz dssp_$(VERSION).orig.tar.gz
+-
+-make.config:
+- @echo "creating empty make.config file"
+- @echo "# Set local options for make here" > make.config
+- @echo "#BOOST_LIB_SUFFIX = -mt" >> make.config
+- @echo "#BOOST_LIB_DIR = $(HOME)/projects/boost/lib" >> make.config
+- @echo "#BOOST_INC_DIR = $(HOME)/projects/boost/include" >> make.config
+-
Added: trunk/packages/dssp/trunk/debian/patches/series
===================================================================
--- trunk/packages/dssp/trunk/debian/patches/series (rev 0)
+++ trunk/packages/dssp/trunk/debian/patches/series 2012-04-18 11:10:22 UTC (rev 10402)
@@ -0,0 +1 @@
+makefile
Added: trunk/packages/dssp/trunk/debian/rules
===================================================================
--- trunk/packages/dssp/trunk/debian/rules (rev 0)
+++ trunk/packages/dssp/trunk/debian/rules 2012-04-18 11:10:22 UTC (rev 10402)
@@ -0,0 +1,4 @@
+#!/usr/bin/make -f
+
+%:
+ dh $@
Property changes on: trunk/packages/dssp/trunk/debian/rules
___________________________________________________________________
Added: svn:executable
+ *
Added: trunk/packages/dssp/trunk/debian/source/format
===================================================================
--- trunk/packages/dssp/trunk/debian/source/format (rev 0)
+++ trunk/packages/dssp/trunk/debian/source/format 2012-04-18 11:10:22 UTC (rev 10402)
@@ -0,0 +1 @@
+3.0 (quilt)
Added: trunk/packages/dssp/trunk/debian/watch
===================================================================
--- trunk/packages/dssp/trunk/debian/watch (rev 0)
+++ trunk/packages/dssp/trunk/debian/watch 2012-04-18 11:10:22 UTC (rev 10402)
@@ -0,0 +1,2 @@
+version=2.0.4
+ftp://ftp.cmbi.ru.nl/pub/software/dssp/dssp-([0-9.]+).tbz
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