[med-svn] r10404 - in trunk/packages/dssp/trunk/debian: . patches

[Laszlo Kajan]

Author: lkajan-guest
Date: 2012-04-18 15:26:20 +0000 (Wed, 18 Apr 2012)
New Revision: 10404

Modified:
   trunk/packages/dssp/trunk/debian/changelog
   trunk/packages/dssp/trunk/debian/control
   trunk/packages/dssp/trunk/debian/patches/makefile
Log:
annotated makefile patch

Modified: trunk/packages/dssp/trunk/debian/changelog
===================================================================
--- trunk/packages/dssp/trunk/debian/changelog	2012-04-18 14:57:16 UTC (rev 10403)
+++ trunk/packages/dssp/trunk/debian/changelog	2012-04-18 15:26:20 UTC (rev 10404)
@@ -1,5 +1,10 @@
 dssp (2.0.4-1) UNRELEASED; urgency=low
 
   * Initial release. (Closes: #669259)
+  * Added description to dssp; added upstream (reference); parallel building
+    now enabled; fixed spelling error in man page; added debug package;
+    fixed debian/watch; added get-orig-source target to rules.
+  * Changed libboost build dependency to version >= 1.42.0.1 to allow
+    building on stable.
 
  -- Laszlo Kajan <lkajan at rostlab.org>  Wed, 18 Apr 2012 11:09:02 +0200

Modified: trunk/packages/dssp/trunk/debian/control
===================================================================
--- trunk/packages/dssp/trunk/debian/control	2012-04-18 14:57:16 UTC (rev 10403)
+++ trunk/packages/dssp/trunk/debian/control	2012-04-18 15:26:20 UTC (rev 10404)
@@ -5,11 +5,11 @@
  Laszlo Kajan <lkajan at rostlab.org>,
  Andreas Tille <tille at debian.org>
 Build-Depends: debhelper (>= 7.0.50~),
-               libboost-filesystem-dev (>= 1.46.1), 
-               libboost-iostreams-dev (>= 1.46.1), 
-               libboost-program-options-dev (>= 1.46.1), 
-               libboost-system-dev (>= 1.46.1), 
-               libboost-thread-dev (>= 1.46.1)
+               libboost-filesystem-dev (>= 1.42.0.1), 
+               libboost-iostreams-dev (>= 1.42.0.1), 
+               libboost-program-options-dev (>= 1.42.0.1), 
+               libboost-system-dev (>= 1.42.0.1), 
+               libboost-thread-dev (>= 1.42.0.1)
 Standards-Version: 3.9.3
 Section: science
 Vcs-Svn: svn://svn.debian.org/debian-med/trunk/packages/dssp/trunk/

Modified: trunk/packages/dssp/trunk/debian/patches/makefile
===================================================================
--- trunk/packages/dssp/trunk/debian/patches/makefile	2012-04-18 14:57:16 UTC (rev 10403)
+++ trunk/packages/dssp/trunk/debian/patches/makefile	2012-04-18 15:26:20 UTC (rev 10404)
@@ -1,3 +1,15 @@
+Description: assorted fixes
+ [Maarten L. Hekkelman <m.hekkelman at cmbi.ru.nl>]
+  * DEST_DIR patched to DESTDIR
+ .
+ [Laszlo Kajan <lkajan at rostlab.org>]
+  * stripping is patched out so that it can be done by dh into a debug package
+  * line echo suppression is removed
+  * spelling errors in man page fixed
+ .
+ Upstream is aware of this patch.
+Author: Maarten L. Hekkelman <m.hekkelman at cmbi.ru.nl>
+Author: Laszlo Kajan <lkajan at rostlab.org>
 --- a/makefile
 +++ b/makefile
 @@ -9,25 +9,21 @@
@@ -84,6 +96,15 @@
 -
 --- a/doc/mkdssp.1
 +++ b/doc/mkdssp.1
+@@ -13,7 +13,7 @@
+ Please note that \fImkdssp\fP \fBdoes not predict\fP secondary structure.
+ .SH OPTIONS
+ If you invoke \fImkdssp\fP with only one parameter, it will be
+-interpreted as the PDB file to process and output will be send to
++interpreted as the PDB file to process and output will be sent to
+ stdout. If a second parameter is specified this is interpreted as
+ the name of the DSSP file to create. Both the input and the output
+ file names may have either \.gz or \.bz2 as extension resulting in
 @@ -159,7 +159,7 @@
  .SH TODO
  The code desperately needs an update. The first thing that needs