[med-svn] r10553 - trunk/packages/seqan/trunk/debian

[Andreas Tille]

Author: tille
Date: 2012-04-23 20:25:07 +0000 (Mon, 23 Apr 2012)
New Revision: 10553

Added:
   trunk/packages/seqan/trunk/debian/seqan-apps.dirs
   trunk/packages/seqan/trunk/debian/seqan-apps.links
   trunk/packages/seqan/trunk/debian/seqan-dev.docs
   trunk/packages/seqan/trunk/debian/seqan-dev.install
Modified:
   trunk/packages/seqan/trunk/debian/rules
Log:
Rely more on debhelper files to simplify debian/rules; make sure package builds twice in a row; tried to switch from cdbs to dh but failed (left the changes as comments); TODO: Find a way to call cmake with the right options using dh


Modified: trunk/packages/seqan/trunk/debian/rules
===================================================================
--- trunk/packages/seqan/trunk/debian/rules	2012-04-23 20:16:51 UTC (rev 10552)
+++ trunk/packages/seqan/trunk/debian/rules	2012-04-23 20:25:07 UTC (rev 10553)
@@ -8,35 +8,45 @@
 
 DEB_DH_BUILDDEB_ARGS = -- -Zxz
 
+## dh does not seem to propagate the correct options to cmake configure step
+#%:
+#	dh $@ --parallel --buildsystem=cmake
+
+#override_dh_auto_build:
+makebuilddir::
+	# create backups of original *generated_forwards.h files to build twice in a row
+	for header in `find seqan -name "*generated_forwards.h"` ; do \
+	  mkdir -p orig/`dirname $$header` ; \
+	  cp -a $$header orig/$${header} ; \
+	done
+#	dh_auto_build
+
+#override_dh_auto_install:
+#	dh_auto_install
 install/seqan-apps:: debian/stamp-install-seqan-apps
 debian/stamp-install-seqan-apps:
-	mkdir -p $(CURDIR)/debian/seqan-apps/usr/bin
-	mkdir -p $(CURDIR)/debian/seqan-apps/usr/lib/sequan/bin
-	mkdir -p $(CURDIR)/debian/seqan-apps/usr/share/doc/seqan-apps
 	#install binaries
-	for APP in dfi insegt mason micro_razers pair_align param_chooser rabema razers razers2 read_analyzer rep_sep sak seqan_tcoffee seqcons snp_store splazers stellar tree_recon ; do \
-	  cp -p $(CURDIR)/obj*/apps/$$APP $(CURDIR)/debian/seqan-apps/usr/lib/sequan/bin/ ; done
-	# Links for compatibility with seqan 1.2-1
-	for APP in dfi micro_razers pair_align razers seqan_tcoffee seqcons tree_recon ; do \
-	  ln -s /usr/lib/sequan/bin/$$APP $(CURDIR)/debian/seqan-apps/usr/bin/$$APP ; done
+	for APP in `find $(CURDIR)/obj*/apps -mindepth 1 -maxdepth 1 -executable -type f` ; do \
+	  cp -a $$APP $(CURDIR)/debian/seqan-apps/usr/lib/sequan/bin/ ; done
 	#install readmes
-	for APP in dfi insegt mason micro_razers razers razers2 sak seqan_tcoffee splazers stellar ; do \
-	  cp -p $(CURDIR)/apps/$$APP/README $(CURDIR)/debian/seqan-apps/usr/share/doc/seqan-apps/README.$$APP ; done
-	touch $@
+	for APP in `find apps -name README` ; do \
+	  app=`echo $$APP | sed 's?.*apps/\(.\+\)/README?\1?'` ; \
+	  echo $$app ; \
+	  cp -a $$APP $(CURDIR)/debian/seqan-apps/usr/share/doc/seqan-apps/README.$$app ; \
+	done
 
-install/seqan-dev:: debian/stamp-install-seqan-dev
-debian/stamp-install-seqan-dev:
-	mkdir -p $(CURDIR)/debian/seqan-dev/usr/include
-	mkdir -p $(CURDIR)/debian/seqan-dev/usr/share/doc/seqan-dev
-	cp -a $(CURDIR)/seqan $(CURDIR)/debian/seqan-dev/usr/include/
-	cp -a $(CURDIR)/demos $(CURDIR)/debian/seqan-dev/usr/share/doc/seqan-dev
-	cp -a $(CURDIR)/doc $(CURDIR)/debian/seqan-dev/usr/share/doc/seqan-dev
-	touch $@
+#override_dh_auto_clean:
+#	dh_auto_clean
+clean::
+	if [ -d orig ] ; then \
+	  for header in `find orig -name "*generated_forwards.h"` ; do \
+	    mv $${header} `echo $$header | sed 's?orig/??'` ; \
+	  done ; \
+	fi
+	rm -rf orig
 
 get-orig-source:
 	uscan --force-download
 	@echo successfully retrieved upstream tarball
 
-clean::
-	$(RM) -r debian/stamp-*
 

Added: trunk/packages/seqan/trunk/debian/seqan-apps.dirs
===================================================================
--- trunk/packages/seqan/trunk/debian/seqan-apps.dirs	                        (rev 0)
+++ trunk/packages/seqan/trunk/debian/seqan-apps.dirs	2012-04-23 20:25:07 UTC (rev 10553)
@@ -0,0 +1,2 @@
+usr/share/doc/seqan-apps
+usr/lib/sequan/bin

Added: trunk/packages/seqan/trunk/debian/seqan-apps.links
===================================================================
--- trunk/packages/seqan/trunk/debian/seqan-apps.links	                        (rev 0)
+++ trunk/packages/seqan/trunk/debian/seqan-apps.links	2012-04-23 20:25:07 UTC (rev 10553)
@@ -0,0 +1,7 @@
+usr/lib/sequan/bin/dfi			usr/bin/dfi
+usr/lib/sequan/bin/micro_razers		usr/bin/micro_razers
+usr/lib/sequan/bin/pair_align		usr/bin/pair_align
+usr/lib/sequan/bin/razers		usr/bin/razers
+usr/lib/sequan/bin/seqan_tcoffee	usr/bin/seqan_tcoffee
+usr/lib/sequan/bin/seqcons		usr/bin/seqcons
+usr/lib/sequan/bin/tree_recon		usr/bin/tree_recon

Added: trunk/packages/seqan/trunk/debian/seqan-dev.docs
===================================================================
--- trunk/packages/seqan/trunk/debian/seqan-dev.docs	                        (rev 0)
+++ trunk/packages/seqan/trunk/debian/seqan-dev.docs	2012-04-23 20:25:07 UTC (rev 10553)
@@ -0,0 +1 @@
+demos

Added: trunk/packages/seqan/trunk/debian/seqan-dev.install
===================================================================
--- trunk/packages/seqan/trunk/debian/seqan-dev.install	                        (rev 0)
+++ trunk/packages/seqan/trunk/debian/seqan-dev.install	2012-04-23 20:25:07 UTC (rev 10553)
@@ -0,0 +1,2 @@
+docs/*		usr/share/doc/seqan-dev/html
+seqan 		usr/include