[med-svn] r10568 - in trunk/packages: . ncbi-epcr/trunk/debian saint saint/trunk saint/trunk/debian

[Andreas Tille]

Author: tille
Date: 2012-04-24 20:54:04 +0000 (Tue, 24 Apr 2012)
New Revision: 10568

Added:
   trunk/packages/saint/
   trunk/packages/saint/trunk/
   trunk/packages/saint/trunk/debian/
   trunk/packages/saint/trunk/debian/changelog
   trunk/packages/saint/trunk/debian/control
   trunk/packages/saint/trunk/debian/upstream
   trunk/packages/saint/trunk/debian/watch
Modified:
   trunk/packages/ncbi-epcr/trunk/debian/copyright
Log:
Inject saint (and restore values in ncbi-epcr copyright which was uncommited on my harddisk)


Modified: trunk/packages/ncbi-epcr/trunk/debian/copyright
===================================================================
--- trunk/packages/ncbi-epcr/trunk/debian/copyright	2012-04-24 12:03:53 UTC (rev 10567)
+++ trunk/packages/ncbi-epcr/trunk/debian/copyright	2012-04-24 20:54:04 UTC (rev 10568)
@@ -1,4 +1,6 @@
 Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
+Upstream-Name: e-PCR
+Upstream-Contact: Kirill Rotmistrovsky <rotmistr at ncbi.nlm.nih.gov>
 Source: ftp://ftp.ncbi.nlm.nih.gov/pub/schuler/e-PCR/e-PCR-2.3.12-src.tar.gz
 
 Files: *

Added: trunk/packages/saint/trunk/debian/changelog
===================================================================
--- trunk/packages/saint/trunk/debian/changelog	                        (rev 0)
+++ trunk/packages/saint/trunk/debian/changelog	2012-04-24 20:54:04 UTC (rev 10568)
@@ -0,0 +1,5 @@
+saint (2.3.2-1) UNRELEASED; urgency=low
+
+  * Initial Release  (Closes: #?)
+
+ -- Andreas Tille <tille at debian.org>  Tue, 24 Apr 2012 22:18:38 +0200

Added: trunk/packages/saint/trunk/debian/control
===================================================================
--- trunk/packages/saint/trunk/debian/control	                        (rev 0)
+++ trunk/packages/saint/trunk/debian/control	2012-04-24 20:54:04 UTC (rev 10568)
@@ -0,0 +1,21 @@
+Source: saint
+Section: science
+Priority: optional
+Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+Uploaders: Andreas Tille <tille at debian.org>
+Build-Depends: debhelper (>= 8)
+Standards-Version: 3.9.3
+Homepage: http://saint-apms.sourceforge.net/Main.html
+Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/saint/
+Vcs-Svn: svn://svn.debian.org/debian-med/trunk/packages/saint/trunk/
+
+Package: saint
+Architecture: any
+Depends: ${shlibs:Depends}, ${misc:Depends}
+Description: Significance Analysis of INTeractome
+ SAINT is a software for assigning confidence scores to protein-protein
+ interactions based on quantitative proteomics data in AP-MS experiments.
+ We posted the version used for spectral count data in the yeast kinase
+ interactome work not incorporating control purification, as well as a
+ generalized implementation for spectral count data with and without
+ control purification.

Added: trunk/packages/saint/trunk/debian/upstream
===================================================================
--- trunk/packages/saint/trunk/debian/upstream	                        (rev 0)
+++ trunk/packages/saint/trunk/debian/upstream	2012-04-24 20:54:04 UTC (rev 10568)
@@ -0,0 +1,22 @@
+Reference:
+  - Author: A. Breitkreutz and H. Choi and J.R. Sharom and L. Boucher and V. Neduva and B. Larsen and Z.Y. Lin and B.J. Breitkreutz and C. Stark and G. Liu and J. Ahn and D. Dewar-Darch and T. Reguly and X. Tang and R. Almeida and Z.S. Qin and T. Pawson and A.-C. Gingras and A.I. Nesvizhskii and M. Tyers
+    Title: A global protein kinase and phosphatase interaction network in yeast
+    Journal: Science
+    Year: 2010
+    Volume: 328
+    Number: 5981
+    Pages: 1043-6
+    DOI: 10.1126/science.1176495
+    PMID: 20489023
+    URL: http://www.mendeley.com/research/global-protein-kinase-phosphatase-interaction-network-yeast-49/
+    ISSN: 00368075
+  - Author: Hyungwon Choi and Brett Larsen and Zhen-Yuan Lin and Ashton Breitkreutz and Dattatreya Mellacheruvu and Damian Fermin and Zhaohui S Qin and Mike Tyers and Anne-Claude Gingras and Alexey I Nesvizhskii 
+    Title: "SAINT: probabilistic scoring of affinity purification–mass spectrometry data"
+    Journal: Nature Methods
+    Year: 2010
+    Volume: 8
+    Pages: 70–73
+    DOI: 10.1038/nmeth.1541
+    PMID: 21131968
+    URL: http://www.nature.com/nmeth/journal/v8/n1/abs/nmeth.1541.html
+    eprint: http://www.nature.com/nmeth/journal/v8/n1/full/nmeth.1541.html

Added: trunk/packages/saint/trunk/debian/watch
===================================================================
--- trunk/packages/saint/trunk/debian/watch	                        (rev 0)
+++ trunk/packages/saint/trunk/debian/watch	2012-04-24 20:54:04 UTC (rev 10568)
@@ -0,0 +1,2 @@
+version=3
+http://sf.net/saint-apms/SAINT_v.?([.\d]+)\.zip