[med-svn] [SCM] fastx-toolkit branch, master, updated. debian/0.0.13.1-1-2-gc94ae9d

[Andreas Tille]

The following commit has been merged in the master branch:
commit c94ae9d3356acb86397bc1aee03562488defdd6f
Author: Andreas Tille <tille at debian.org>
Date:   Wed Apr 25 23:02:50 2012 +0200

    Fix build issue with gcc-4.7

diff --git a/debian/changelog b/debian/changelog
index fecf5e0..7e21357 100644
--- a/debian/changelog
+++ b/debian/changelog
@@ -3,6 +3,8 @@ fastx-toolkit (0.0.13.1-2) UNRELEASED; urgency=low
   * debian/control:
      - Added myself to Uploaders
      - Standards-Version: 3.9.3 (no changes needed)
+  * debian/patches/gcc-4.7.patch: Fix build issue with gcc-4.7
+    Closes: #667161
 
  -- Andreas Tille <tille at debian.org>  Wed, 25 Apr 2012 22:31:55 +0200
 
diff --git a/debian/patches/gcc-4.7.patch b/debian/patches/gcc-4.7.patch
new file mode 100644
index 0000000..7287987
--- /dev/null
+++ b/debian/patches/gcc-4.7.patch
@@ -0,0 +1,19 @@
+Author: Andreas Tille <tille at debian.org>
+Date: Wed, 25 Apr 2012 22:31:55 +0200
+Bug-Closed: http://bugs.debian.org/667161
+Description: Build with g++ version 4.7
+ Follow the hint given at
+   http://gcc.gnu.org/gcc-4.7/porting_to.html
+ which was linked in the bug report and add a missing
+ include.
+
+--- fastx-toolkit.orig/src/libfastx/sequence_alignment.h
++++ fastx-toolkit/src/libfastx/sequence_alignment.h
+@@ -19,6 +19,7 @@
+ #define __SEQUENCE_ALIGNMENT_HEADER__
+ 
+ #include <err.h>
++#include <unistd.h>
+ 
+ struct SequenceAlignmentResults
+ {
diff --git a/debian/patches/series b/debian/patches/series
new file mode 100644
index 0000000..8de1aa1
--- /dev/null
+++ b/debian/patches/series
@@ -0,0 +1 @@
+gcc-4.7.patch

-- 
FASTQ/A short-reads pre-processing tools