[med-svn] r10602 - trunk/packages/cd-hit/trunk/debian

[Andreas Tille]

Author: tille
Date: 2012-04-26 07:19:12 +0000 (Thu, 26 Apr 2012)
New Revision: 10602

Added:
   trunk/packages/cd-hit/trunk/debian/README.Debian
Modified:
   trunk/packages/cd-hit/trunk/debian/changelog
   trunk/packages/cd-hit/trunk/debian/control
   trunk/packages/cd-hit/trunk/debian/rules
Log:
Use MPI version of cd-hit


Added: trunk/packages/cd-hit/trunk/debian/README.Debian
===================================================================
--- trunk/packages/cd-hit/trunk/debian/README.Debian	                        (rev 0)
+++ trunk/packages/cd-hit/trunk/debian/README.Debian	2012-04-26 07:19:12 UTC (rev 10602)
@@ -0,0 +1,9 @@
+Cd-hit for Debian
+=================
+
+Currently cd-hit is built with MPI support.  Please drop the Debian Med
+team a note (or file a bug report using `reportbug cd-hit`) and ask us for
+supporting an alternative package without MPI.
+
+ -- Andreas Tille <tille at debian.org>  Thu, 26 Apr 2012 07:54:23 +0200
+

Modified: trunk/packages/cd-hit/trunk/debian/changelog
===================================================================
--- trunk/packages/cd-hit/trunk/debian/changelog	2012-04-26 06:44:01 UTC (rev 10601)
+++ trunk/packages/cd-hit/trunk/debian/changelog	2012-04-26 07:19:12 UTC (rev 10602)
@@ -4,6 +4,9 @@
     well as the LaTeX source of the documentation
   * debian/patches/use-dpkg-buildflags.patch: Make sure hardening
     flags will really propagate
+  * debian/{control,rules}: Use mpi version of cd-hit
+  * README.Debian: Tell users that we are using mpi and they should
+    ask for an alternative if needed
 
  -- Andreas Tille <tille at debian.org>  Thu, 26 Apr 2012 07:54:23 +0200
 

Modified: trunk/packages/cd-hit/trunk/debian/control
===================================================================
--- trunk/packages/cd-hit/trunk/debian/control	2012-04-26 06:44:01 UTC (rev 10601)
+++ trunk/packages/cd-hit/trunk/debian/control	2012-04-26 07:19:12 UTC (rev 10602)
@@ -5,7 +5,7 @@
 Uploaders: Tim Booth <tbooth at ceh.ac.uk>,
  Andreas Tille <tille at debian.org>
 DM-Upload-Allowed: yes
-Build-Depends: debhelper (>= 9)
+Build-Depends: debhelper (>= 9), mpi-default-dev
 Standards-Version: 3.9.3
 Homepage: http://weizhong-lab.ucsd.edu/cd-hit/
 Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/cd-hit/trunk/
@@ -13,7 +13,7 @@
 
 Package: cd-hit
 Architecture: any
-Depends: ${shlibs:Depends}, ${misc:Depends}, ${perl:Depends},
+Depends: ${shlibs:Depends}, ${misc:Depends}, ${perl:Depends}, mpi-default-bin
 Description: suite of programs designed to quickly group sequences
  cd-hit contains a number of programs designed to quickly group
  sequences. cd-hit groups proteins into clusters that meet a user-defined

Modified: trunk/packages/cd-hit/trunk/debian/rules
===================================================================
--- trunk/packages/cd-hit/trunk/debian/rules	2012-04-26 06:44:01 UTC (rev 10601)
+++ trunk/packages/cd-hit/trunk/debian/rules	2012-04-26 07:19:12 UTC (rev 10602)
@@ -12,6 +12,9 @@
 %:
 	dh $@
 
+override_dh_auto_build:
+	dh_auto_build -- openmp=yes
+
 override_dh_auto_install:
 	dh_auto_install -- PREFIX=debian/$(pkg)/usr/lib/cd-hit