[med-svn] [SCM] bowtie2 branch, master, updated. upstream/2.0.0-beta5-13-g78bda21

[Andreas Tille]

The following commit has been merged in the master branch:
commit 78bda21d610ea2bfdf7398d029fc2504ee794853
Author: Andreas Tille <tille at debian.org>
Date:   Thu Apr 26 14:00:42 2012 +0200

    Added my "publication of the day"

diff --git a/debian/changelog b/debian/changelog
index c5bb923..b9603be 100644
--- a/debian/changelog
+++ b/debian/changelog
@@ -1,9 +1,13 @@
 bowtie2 (2.0.0-beta5-2) UNRELEASED; urgency=low
 
-  * [Alexandre Mestiasvili]
+  [ Alexandre Mestiashvili ]
   * file sse_util.h has missing copyright header. The Author (Benjamin Langmead) has 
     confirmed that the file is distributed under GPL3 license.
- -- Alexandre Mestiashvili <alex at biotec.tu-dresden.de>  Sat, 10 Mar 2012 20:19:53 +0100
+
+  [ Andreas Tille ]
+  * debian/upstream: Added publication
+
+ -- Andreas Tille <tille at debian.org>  Thu, 26 Apr 2012 13:59:54 +0200
 
 bowtie2 (2.0.0-beta5-1) unstable; urgency=low
 
diff --git a/debian/control b/debian/control
index f6d2f12..03a5e16 100644
--- a/debian/control
+++ b/debian/control
@@ -3,7 +3,8 @@ Section: science
 Priority: extra
 Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
 DM-Upload-Allowed: yes
-Uploaders: Alexandre Mestiashvili <alex at biotec.tu-dresden.de>
+Uploaders: Alexandre Mestiashvili <alex at biotec.tu-dresden.de>,
+ Andreas Tille <tille at debian.org>
 Build-Depends: debhelper (>= 8.0), help2man
 Standards-Version: 3.9.2
 Homepage: http://bowtie-bio.sourceforge.net/bowtie2
diff --git a/debian/upstream b/debian/upstream
index c46ccf9..c23e0c5 100644
--- a/debian/upstream
+++ b/debian/upstream
@@ -1,3 +1,13 @@
 Contact: Ben Langmead <blangmea at jhsph.edu>
 Homepage: http://bowtie-bio.sourceforge.net/bowtie2/
 Name: Bowtie2
+Reference:
+  Author: Ben Langmead and Steven L Salzberg
+  Title: Fast gapped-read alignment with Bowtie 2
+  Journal: Nature Methods
+  Year: 2012
+  Volume: 9
+  Pages: 357–359
+  DOI: 10.1038/nmeth.1923
+  PMID: 22388286
+  URL: http://www.nature.com/nmeth/journal/v9/n4/abs/nmeth.1923.html

-- 
ultrafast memory-efficient short read aligner