[med-svn] r10611 - in trunk/packages/sbmltoolbox/trunk: . debian debian/etc debian/etc/profile.d
Ivo Maintz
ivomaintz-guest at alioth.debian.org
Thu Apr 26 12:13:22 UTC 2012
Author: ivomaintz-guest
Date: 2012-04-26 12:13:22 +0000 (Thu, 26 Apr 2012)
New Revision: 10611
Added:
trunk/packages/sbmltoolbox/trunk/debian/
trunk/packages/sbmltoolbox/trunk/debian/changelog
trunk/packages/sbmltoolbox/trunk/debian/compat
trunk/packages/sbmltoolbox/trunk/debian/control
trunk/packages/sbmltoolbox/trunk/debian/copyright
trunk/packages/sbmltoolbox/trunk/debian/doc-base
trunk/packages/sbmltoolbox/trunk/debian/docs
trunk/packages/sbmltoolbox/trunk/debian/etc/
trunk/packages/sbmltoolbox/trunk/debian/etc/profile.d/
trunk/packages/sbmltoolbox/trunk/debian/etc/profile.d/SBMLToolbox.sh
trunk/packages/sbmltoolbox/trunk/debian/mktbprofile.sh
trunk/packages/sbmltoolbox/trunk/debian/rules
trunk/packages/sbmltoolbox/trunk/debian/sbmltoolbox.install
Log:
[svn-inject] Applying Debian modifications (4.1.0-1) to trunk
Property changes on: trunk/packages/sbmltoolbox/trunk/debian
___________________________________________________________________
Added: mergeWithUpstream
+ 1
Added: trunk/packages/sbmltoolbox/trunk/debian/changelog
===================================================================
--- trunk/packages/sbmltoolbox/trunk/debian/changelog (rev 0)
+++ trunk/packages/sbmltoolbox/trunk/debian/changelog 2012-04-26 12:13:22 UTC (rev 10611)
@@ -0,0 +1,44 @@
+sbmltoolbox (4.1.0-1) unstable; urgency=low
+
+ * changed /etc/profile.d/SBMLToolbox.sh to avoid duplicate entries
+ in $MATLABPATH and $OCTAVE_PATH
+ * removed /etc/csh/login.d/SBMLToolbox.csh (noone was using it...)
+ * update from upstream
+
+ -- Ivo Maintz <ivo at maintz.de> Thu, 25 Apr 2012 09:51:02 +0200
+
+sbmltoolbox (4.0.1-1) unstable; urgency=low
+
+ * update from upstream
+
+ -- Ivo Maintz <ivo at maintz.de> Mon, 24 Oct 2011 13:41:24 +0200
+
+sbmltoolbox (3.1.2-3) unstable; urgency=low
+
+ * now with use of the /etc/csh/login.d/ directory
+
+ -- Ivo Maintz <ivo at maintz.de> Wed, 01 Dec 2010 16:14:53 +0100
+
+sbmltoolbox (3.1.2-2) unstable; urgency=low
+
+ * now with use of the /etc/profile.d/ directory
+
+ -- Ivo Maintz <ivo at maintz.de> Mon, 15 Nov 2010 10:23:11 +0100
+
+sbmltoolbox (3.1.2-1) unstable; urgency=low
+
+ * update from upstream
+
+ -- Ivo Maintz <ivo at maintz.de> Wed, 10 Nov 2010 15:59:54 +0100
+
+sbmltoolbox (3.1.0-2) unstable; urgency=low
+
+ * fixed dependencies to libsbml4-matlab; postinst sets now the pathes in matlab
+
+ -- Ivo Maintz <ivo at maintz.de> Sat, 6 Nov 2010 10:27:59 +0100
+
+sbmltoolbox (3.1.0-1) unstable; urgency=low
+
+ * _my_ first release
+
+ -- Ivo Maintz <ivo at maintz.de> Tue, 16 Mar 2010 13:09:33 +0100
Added: trunk/packages/sbmltoolbox/trunk/debian/compat
===================================================================
--- trunk/packages/sbmltoolbox/trunk/debian/compat (rev 0)
+++ trunk/packages/sbmltoolbox/trunk/debian/compat 2012-04-26 12:13:22 UTC (rev 10611)
@@ -0,0 +1 @@
+7
Added: trunk/packages/sbmltoolbox/trunk/debian/control
===================================================================
--- trunk/packages/sbmltoolbox/trunk/debian/control (rev 0)
+++ trunk/packages/sbmltoolbox/trunk/debian/control 2012-04-26 12:13:22 UTC (rev 10611)
@@ -0,0 +1,20 @@
+Source: sbmltoolbox
+Section: science
+Priority: extra
+Maintainer: Ivo Maintz <ivo at maintz.de>
+Homepage: http://sbml.org/Software/SBMLToolbox
+Build-Depends: debhelper (>= 7.0.50~)
+Standards-Version: 3.9.3
+
+Package: sbmltoolbox
+Architecture: all
+Depends: ${misc:Depends},
+ libsbml5 | libsbm4,
+ libsbml5-octave | libsbml4-octave
+Recommends: matlab (>=2010a-1),
+ octave,
+ libsbml5-matlab | libsbml4-matlab
+Description: libsbml toolbox for matlab
+ A free, open-source package for working with SBML in MATLAB.
+ It provides functions for reading, writing, manipulating,
+ and simulating SBML models.
Added: trunk/packages/sbmltoolbox/trunk/debian/copyright
===================================================================
--- trunk/packages/sbmltoolbox/trunk/debian/copyright (rev 0)
+++ trunk/packages/sbmltoolbox/trunk/debian/copyright 2012-04-26 12:13:22 UTC (rev 10611)
@@ -0,0 +1,44 @@
+This package was debianized by:
+
+ Ivo Maintz <ivo at maintz.de> on Tue, 16 Mar 2010 13:09:33 +0100
+
+It was downloaded from:
+
+ http://sourceforge.net/projects/sbml/files/SBMLToolbox/
+
+Upstream Author:
+
+ Sarah M. Keating
+
+Copyright:
+
+ Copyright 2007-2008 California Institute of Technology and
+ the University of Hertfordshire.
+
+ Copyright 2003 California Institute of Technology, Japan
+ Science and Technology Agency, and the University of
+ Hertfordshire.
+
+License:
+
+ This program is free software: you can redistribute it and/or modify
+ it under the terms of the GNU General Public License as published by
+ the Free Software Foundation, either version 3 of the License, or
+ (at your option) any later version.
+
+ This package is distributed in the hope that it will be useful,
+ but WITHOUT ANY WARRANTY; without even the implied warranty of
+ MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ GNU General Public License for more details.
+
+ You should have received a copy of the GNU General Public License
+ along with this program. If not, see <http://www.gnu.org/licenses/>.
+
+On Debian systems, the complete text of the GNU General
+Public License version 3 can be found in `/usr/share/common-licenses/GPL-3'.
+
+The Debian packaging is:
+
+ Copyright (C) 2010 Ivo Maintz <ivo at maintz.de>
+
+and is licensed under the GPL version 3, see above.
Added: trunk/packages/sbmltoolbox/trunk/debian/doc-base
===================================================================
--- trunk/packages/sbmltoolbox/trunk/debian/doc-base (rev 0)
+++ trunk/packages/sbmltoolbox/trunk/debian/doc-base 2012-04-26 12:13:22 UTC (rev 10611)
@@ -0,0 +1,9 @@
+Document: sbmltoolbox
+Title: SBMLToolbox Documentation
+Author: Sarah Keating
+Abstract: Usage instructions for SBMLToolbox
+Section: Science/Biology
+
+Format: HTML
+Files: /usr/share/doc/sbmltoolbox/*.html
+Index: /usr/share/doc/sbmltoolbox/sbmltoolbox.html
Added: trunk/packages/sbmltoolbox/trunk/debian/docs
===================================================================
--- trunk/packages/sbmltoolbox/trunk/debian/docs (rev 0)
+++ trunk/packages/sbmltoolbox/trunk/debian/docs 2012-04-26 12:13:22 UTC (rev 10611)
@@ -0,0 +1,2 @@
+docs/*
+changelog
Added: trunk/packages/sbmltoolbox/trunk/debian/etc/profile.d/SBMLToolbox.sh
===================================================================
--- trunk/packages/sbmltoolbox/trunk/debian/etc/profile.d/SBMLToolbox.sh (rev 0)
+++ trunk/packages/sbmltoolbox/trunk/debian/etc/profile.d/SBMLToolbox.sh 2012-04-26 12:13:22 UTC (rev 10611)
@@ -0,0 +1,60 @@
+TB="/usr/share/SBMLToolbox"
+TB_PATH="$TB:\
+$TB/AccessModel:\
+$TB/AccessModel/Test:\
+$TB/Convenience:\
+$TB/Convenience/Test:\
+$TB/fbc_package:\
+$TB/fbc_package/MATLAB_SBML_Structures:\
+$TB/fbc_package/MATLAB_SBML_Structures/FBCModel:\
+$TB/fbc_package/MATLAB_SBML_Structures/FBCSpecies:\
+$TB/fbc_package/MATLAB_SBML_Structures/FluxBound:\
+$TB/fbc_package/MATLAB_SBML_Structures/FluxObjective:\
+$TB/fbc_package/MATLAB_SBML_Structures/Objective:\
+$TB/fbc_package/MATLAB_SBML_Structures/structFieldnames:\
+$TB/fbc_package/MATLAB_SBML_Structures/test:\
+$TB/fbc_package/test:\
+$TB/fbc_package/test/test-data:\
+$TB/fbc_package/Validate_MATLAB_SBML_Structures:\
+$TB/fbc_package/Validate_MATLAB_SBML_Structures/test:\
+$TB/MATLAB_SBML_Structure_Functions:\
+$TB/MATLAB_SBML_Structure_Functions/AlgebraicRule:\
+$TB/MATLAB_SBML_Structure_Functions/AssignmentRule:\
+$TB/MATLAB_SBML_Structure_Functions/Compartment:\
+$TB/MATLAB_SBML_Structure_Functions/CompartmentType:\
+$TB/MATLAB_SBML_Structure_Functions/CompartmentVolumeRule:\
+$TB/MATLAB_SBML_Structure_Functions/Constraint:\
+$TB/MATLAB_SBML_Structure_Functions/Delay:\
+$TB/MATLAB_SBML_Structure_Functions/Event:\
+$TB/MATLAB_SBML_Structure_Functions/EventAssignment:\
+$TB/MATLAB_SBML_Structure_Functions/FunctionDefinition:\
+$TB/MATLAB_SBML_Structure_Functions/InitialAssignment:\
+$TB/MATLAB_SBML_Structure_Functions/KineticLaw:\
+$TB/MATLAB_SBML_Structure_Functions/LocalParameter:\
+$TB/MATLAB_SBML_Structure_Functions/Model:\
+$TB/MATLAB_SBML_Structure_Functions/ModifierSpeciesReference:\
+$TB/MATLAB_SBML_Structure_Functions/Parameter:\
+$TB/MATLAB_SBML_Structure_Functions/ParameterRule:\
+$TB/MATLAB_SBML_Structure_Functions/Priority:\
+$TB/MATLAB_SBML_Structure_Functions/RateRule:\
+$TB/MATLAB_SBML_Structure_Functions/Reaction:\
+$TB/MATLAB_SBML_Structure_Functions/Rule:\
+$TB/MATLAB_SBML_Structure_Functions/Species:\
+$TB/MATLAB_SBML_Structure_Functions/SpeciesConcentrationRule:\
+$TB/MATLAB_SBML_Structure_Functions/SpeciesReference:\
+$TB/MATLAB_SBML_Structure_Functions/SpeciesType:\
+$TB/MATLAB_SBML_Structure_Functions/StoichiometryMath:\
+$TB/MATLAB_SBML_Structure_Functions/structFieldnames:\
+$TB/MATLAB_SBML_Structure_Functions/Test:\
+$TB/MATLAB_SBML_Structure_Functions/Trigger:\
+$TB/MATLAB_SBML_Structure_Functions/Unit:\
+$TB/MATLAB_SBML_Structure_Functions/UnitDefinition:\
+$TB/Simulation:\
+$TB/Simulation/Test:\
+$TB/Test:\
+$TB/Test/test-data:\
+$TB/Validate_MATLAB_SBML_Structures:\
+$TB/Validate_MATLAB_SBML_Structures/Test:\
+"
+echo $OCTAVE_PATH | grep -q $TB || export OCTAVE_PATH="${TB_PATH}:${OCTAVE_PATH}"
+echo $MATLABPATH | grep -q $TB || export MATLABPATH="${TB_PATH}:${MATLABPATH}"
Added: trunk/packages/sbmltoolbox/trunk/debian/mktbprofile.sh
===================================================================
--- trunk/packages/sbmltoolbox/trunk/debian/mktbprofile.sh (rev 0)
+++ trunk/packages/sbmltoolbox/trunk/debian/mktbprofile.sh 2012-04-26 12:13:22 UTC (rev 10611)
@@ -0,0 +1,8 @@
+#!/bin/bash
+NAME="SBMLToolbox"
+echo TB=\"/usr/share/$NAME\" > debian/etc/profile.d/$NAME.sh
+echo 'TB_PATH="$TB:\' >> debian/etc/profile.d/$NAME.sh
+find toolbox/* -type d | sed -e 's/toolbox/\$TB/g' -e 's/.*/&:\\/' >> debian/etc/profile.d/$NAME.sh
+echo \" >> debian/etc/profile.d/$NAME.sh
+echo 'echo $OCTAVE_PATH | grep -q $TB || export OCTAVE_PATH="${TB_PATH}:${OCTAVE_PATH}"' >> debian/etc/profile.d/$NAME.sh
+echo 'echo $MATLABPATH | grep -q $TB || export MATLABPATH="${TB_PATH}:${MATLABPATH}"' >> debian/etc/profile.d/$NAME.sh
Added: trunk/packages/sbmltoolbox/trunk/debian/rules
===================================================================
--- trunk/packages/sbmltoolbox/trunk/debian/rules (rev 0)
+++ trunk/packages/sbmltoolbox/trunk/debian/rules 2012-04-26 12:13:22 UTC (rev 10611)
@@ -0,0 +1,21 @@
+#!/usr/bin/make -f
+# -*- makefile -*-
+# Sample debian/rules that uses debhelper.
+# This file was originally written by Joey Hess and Craig Small.
+# As a special exception, when this file is copied by dh-make into a
+# dh-make output file, you may use that output file without restriction.
+# This special exception was added by Craig Small in version 0.37 of dh-make.
+
+# Uncomment this to turn on verbose mode.
+#export DH_VERBOSE=1
+
+%:
+ dh $@
+
+override_dh_auto_build:
+ # create a profile file for the SBMLToolbox
+ debian/mktbprofile.sh
+ cp NEWS.txt changelog
+
+override_dh_auto_clean:
+ rm -f changelog
Property changes on: trunk/packages/sbmltoolbox/trunk/debian/rules
___________________________________________________________________
Added: svn:executable
+ *
Added: trunk/packages/sbmltoolbox/trunk/debian/sbmltoolbox.install
===================================================================
--- trunk/packages/sbmltoolbox/trunk/debian/sbmltoolbox.install (rev 0)
+++ trunk/packages/sbmltoolbox/trunk/debian/sbmltoolbox.install 2012-04-26 12:13:22 UTC (rev 10611)
@@ -0,0 +1,2 @@
+toolbox/* /usr/share/SBMLToolbox
+debian/etc/* /etc/
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