[med-svn] r10612 - trunk/packages/sbmltoolbox/trunk/debian
Ivo Maintz
ivomaintz-guest at alioth.debian.org
Thu Apr 26 13:12:43 UTC 2012
Author: ivomaintz-guest
Date: 2012-04-26 13:12:43 +0000 (Thu, 26 Apr 2012)
New Revision: 10612
Added:
trunk/packages/sbmltoolbox/trunk/debian/upstream
Modified:
trunk/packages/sbmltoolbox/trunk/debian/changelog
trunk/packages/sbmltoolbox/trunk/debian/control
trunk/packages/sbmltoolbox/trunk/debian/copyright
trunk/packages/sbmltoolbox/trunk/debian/mktbprofile.sh
trunk/packages/sbmltoolbox/trunk/debian/rules
Log:
added upstream informations, did some minor changes
Ready for upload!
Modified: trunk/packages/sbmltoolbox/trunk/debian/changelog
===================================================================
--- trunk/packages/sbmltoolbox/trunk/debian/changelog 2012-04-26 12:13:22 UTC (rev 10611)
+++ trunk/packages/sbmltoolbox/trunk/debian/changelog 2012-04-26 13:12:43 UTC (rev 10612)
@@ -1,4 +1,4 @@
-sbmltoolbox (4.1.0-1) unstable; urgency=low
+sbmltoolbox (4.1.0-1) UNRELEASED; urgency=low
* changed /etc/profile.d/SBMLToolbox.sh to avoid duplicate entries
in $MATLABPATH and $OCTAVE_PATH
@@ -7,37 +7,37 @@
-- Ivo Maintz <ivo at maintz.de> Thu, 25 Apr 2012 09:51:02 +0200
-sbmltoolbox (4.0.1-1) unstable; urgency=low
+sbmltoolbox (4.0.1-1) UNRELEASED; urgency=low
* update from upstream
-- Ivo Maintz <ivo at maintz.de> Mon, 24 Oct 2011 13:41:24 +0200
-sbmltoolbox (3.1.2-3) unstable; urgency=low
+sbmltoolbox (3.1.2-3) UNRELEASED; urgency=low
* now with use of the /etc/csh/login.d/ directory
-- Ivo Maintz <ivo at maintz.de> Wed, 01 Dec 2010 16:14:53 +0100
-sbmltoolbox (3.1.2-2) unstable; urgency=low
+sbmltoolbox (3.1.2-2) UNRELEASED; urgency=low
* now with use of the /etc/profile.d/ directory
-- Ivo Maintz <ivo at maintz.de> Mon, 15 Nov 2010 10:23:11 +0100
-sbmltoolbox (3.1.2-1) unstable; urgency=low
+sbmltoolbox (3.1.2-1) UNRELEASED; urgency=low
* update from upstream
-- Ivo Maintz <ivo at maintz.de> Wed, 10 Nov 2010 15:59:54 +0100
-sbmltoolbox (3.1.0-2) unstable; urgency=low
+sbmltoolbox (3.1.0-2) UNRELEASED; urgency=low
* fixed dependencies to libsbml4-matlab; postinst sets now the pathes in matlab
-- Ivo Maintz <ivo at maintz.de> Sat, 6 Nov 2010 10:27:59 +0100
-sbmltoolbox (3.1.0-1) unstable; urgency=low
+sbmltoolbox (3.1.0-1) UNRELEASED; urgency=low
* _my_ first release
Modified: trunk/packages/sbmltoolbox/trunk/debian/control
===================================================================
--- trunk/packages/sbmltoolbox/trunk/debian/control 2012-04-26 12:13:22 UTC (rev 10611)
+++ trunk/packages/sbmltoolbox/trunk/debian/control 2012-04-26 13:12:43 UTC (rev 10612)
@@ -1,20 +1,25 @@
Source: sbmltoolbox
Section: science
-Priority: extra
-Maintainer: Ivo Maintz <ivo at maintz.de>
-Homepage: http://sbml.org/Software/SBMLToolbox
+Priority: optional
+Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+Uploaders: Ivo Maintz <ivo at maintz.de>
+DM-Upload-Allowed: yes
Build-Depends: debhelper (>= 7.0.50~)
Standards-Version: 3.9.3
+Homepage: http://sbml.org/Software/SBMLToolbox
+Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/sbmltoolbox/trunk/
+Vcs-Svn: svn://svn.debian.org/svn/debian-med/trunk/packages/sbmltoolbox
Package: sbmltoolbox
Architecture: all
Depends: ${misc:Depends},
libsbml5 | libsbm4,
- libsbml5-octave | libsbml4-octave
-Recommends: matlab (>=2010a-1),
- octave,
+ libsbml5-octave | libsbml4-octave,
+ octave
+Recommends: qtoctave,
+ matlab (>=2010a-1),
libsbml5-matlab | libsbml4-matlab
-Description: libsbml toolbox for matlab
- A free, open-source package for working with SBML in MATLAB.
- It provides functions for reading, writing, manipulating,
+Description: libsbml toolbox for octave and matlab
+ A free, open-source package for working with SBML in OCTAVE and
+ MATLAB. It provides functions for reading, writing, manipulating,
and simulating SBML models.
Modified: trunk/packages/sbmltoolbox/trunk/debian/copyright
===================================================================
--- trunk/packages/sbmltoolbox/trunk/debian/copyright 2012-04-26 12:13:22 UTC (rev 10611)
+++ trunk/packages/sbmltoolbox/trunk/debian/copyright 2012-04-26 13:12:43 UTC (rev 10612)
@@ -1,44 +1,40 @@
-This package was debianized by:
+Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
+Upstream-Name: SBMLToolbox
+Source: http://sourceforge.net/projects/sbml/files/SBMLToolbox/
- Ivo Maintz <ivo at maintz.de> on Tue, 16 Mar 2010 13:09:33 +0100
+Files: *
+Copyright: 2005-2012 Sarah M. Keating
+ 2009-2012 California Institute of Technology, Pasadena, CA, USA
+ EMBL European Bioinformatics Institute (EBML-EBI), Hinxton, UK
+ 2006-2008 California Institute of Technology, Pasadena, CA, USA
+ University of Hertfordshire, Hatfield, UK
+ 2003-2005 California Institute of Technology, Pasadena, CA, USA
+ Japan Science and Technology Agency, Japan
+ University of Hertfordshire, Hatfield, UK
+Upstream-Contact: SBML-TEAM mailto:sbml-team at caltech.edu
+License: LGPL-2.1
-It was downloaded from:
+Files: debian/*
+Copyright: 2012 Ivo Maintz <ivo at maintz.de>
+License: GPL-2.0+
- http://sourceforge.net/projects/sbml/files/SBMLToolbox/
+License: GPL-2.0+
+ This package is free software; you can redistribute it and/or modify
+ it under the terms of the GNU General Public License as published by
+ the Free Software Foundation; either version 2 of the License, or
+ (at your option) any later version.
+ .
+ This package is distributed in the hope that it will be useful,
+ but WITHOUT ANY WARRANTY; without even the implied warranty of
+ MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ GNU General Public License for more details.
+ .
+ You should have received a copy of the GNU General Public License
+ along with this program. If not, see <http://www.gnu.org/licenses/>
+ .
+ On Debian systems, the complete text of the GNU General
+ Public License version 2 can be found in "/usr/share/common-licenses/GPL-2".
-Upstream Author:
-
- Sarah M. Keating
-
-Copyright:
-
- Copyright 2007-2008 California Institute of Technology and
- the University of Hertfordshire.
-
- Copyright 2003 California Institute of Technology, Japan
- Science and Technology Agency, and the University of
- Hertfordshire.
-
-License:
-
- This program is free software: you can redistribute it and/or modify
- it under the terms of the GNU General Public License as published by
- the Free Software Foundation, either version 3 of the License, or
- (at your option) any later version.
-
- This package is distributed in the hope that it will be useful,
- but WITHOUT ANY WARRANTY; without even the implied warranty of
- MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
- GNU General Public License for more details.
-
- You should have received a copy of the GNU General Public License
- along with this program. If not, see <http://www.gnu.org/licenses/>.
-
-On Debian systems, the complete text of the GNU General
-Public License version 3 can be found in `/usr/share/common-licenses/GPL-3'.
-
-The Debian packaging is:
-
- Copyright (C) 2010 Ivo Maintz <ivo at maintz.de>
-
-and is licensed under the GPL version 3, see above.
+License: LGPL-2.1
+ On Debian systems, the complete text of the GNU Lesser General
+ Public License version 2.1 can be found in "/usr/share/common-licenses/LGPL-2.1".
Modified: trunk/packages/sbmltoolbox/trunk/debian/mktbprofile.sh
===================================================================
--- trunk/packages/sbmltoolbox/trunk/debian/mktbprofile.sh 2012-04-26 12:13:22 UTC (rev 10611)
+++ trunk/packages/sbmltoolbox/trunk/debian/mktbprofile.sh 2012-04-26 13:12:43 UTC (rev 10612)
@@ -4,5 +4,5 @@
echo 'TB_PATH="$TB:\' >> debian/etc/profile.d/$NAME.sh
find toolbox/* -type d | sed -e 's/toolbox/\$TB/g' -e 's/.*/&:\\/' >> debian/etc/profile.d/$NAME.sh
echo \" >> debian/etc/profile.d/$NAME.sh
-echo 'echo $OCTAVE_PATH | grep -q $TB || export OCTAVE_PATH="${TB_PATH}:${OCTAVE_PATH}"' >> debian/etc/profile.d/$NAME.sh
-echo 'echo $MATLABPATH | grep -q $TB || export MATLABPATH="${TB_PATH}:${MATLABPATH}"' >> debian/etc/profile.d/$NAME.sh
+echo 'echo $OCTAVE_PATH | grep -q $TB || export OCTAVE_PATH="${TB_PATH}${OCTAVE_PATH}"' >> debian/etc/profile.d/$NAME.sh
+echo 'echo $MATLABPATH | grep -q $TB || export MATLABPATH="${TB_PATH}${MATLABPATH}"' >> debian/etc/profile.d/$NAME.sh
Modified: trunk/packages/sbmltoolbox/trunk/debian/rules
===================================================================
--- trunk/packages/sbmltoolbox/trunk/debian/rules 2012-04-26 12:13:22 UTC (rev 10611)
+++ trunk/packages/sbmltoolbox/trunk/debian/rules 2012-04-26 13:12:43 UTC (rev 10612)
@@ -14,7 +14,7 @@
override_dh_auto_build:
# create a profile file for the SBMLToolbox
- debian/mktbprofile.sh
+ /bin/bash debian/mktbprofile.sh
cp NEWS.txt changelog
override_dh_auto_clean:
Added: trunk/packages/sbmltoolbox/trunk/debian/upstream
===================================================================
--- trunk/packages/sbmltoolbox/trunk/debian/upstream (rev 0)
+++ trunk/packages/sbmltoolbox/trunk/debian/upstream 2012-04-26 13:12:43 UTC (rev 10612)
@@ -0,0 +1,13 @@
+Contact: sbml-team at caltech.edu
+Name: SBMLToolbox
+Reference:
+ Author: Keating, S. M., Bornstein, B. J., Finney, A., and Hucka M.
+ Title: "SBMLToolbox: an SBML toolbox for MATLAB users."
+ Journal: Bioinformatics
+ Volume: 22
+ Number: 10
+ Pages: 1275-1277
+ Year: 2006
+ DOI: 10.1093/bioinformatics/btl111
+ URL: http://bioinformatics.oxfordjournals.org/content/22/10/1275
+ eprint: http://bioinformatics.oxfordjournals.org/content/22/10/1275.full.pdf+html
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