[med-svn] r12011 - trunk/packages/profbval/trunk/debian

[Laszlo Kajan]

Author: lkajan-guest
Date: 2012-08-08 12:32:52 +0000 (Wed, 08 Aug 2012)
New Revision: 12011

Modified:
   trunk/packages/profbval/trunk/debian/changelog
   trunk/packages/profbval/trunk/debian/control
   trunk/packages/profbval/trunk/debian/copyright
Log:
examples/cad23-fil.rdbProf is now mentioned in d/copyright; addressed other issues of FTP masters

Modified: trunk/packages/profbval/trunk/debian/changelog
===================================================================
--- trunk/packages/profbval/trunk/debian/changelog	2012-08-07 20:08:04 UTC (rev 12010)
+++ trunk/packages/profbval/trunk/debian/changelog	2012-08-08 12:32:52 UTC (rev 12011)
@@ -1,4 +1,4 @@
-profbval (1.0.20-1) unstable; urgency=low
+profbval (1.0.21-1) unstable; urgency=low
 
   * Initial release in Debian (Closes: #680140)
 

Modified: trunk/packages/profbval/trunk/debian/control
===================================================================
--- trunk/packages/profbval/trunk/debian/control	2012-08-07 20:08:04 UTC (rev 12010)
+++ trunk/packages/profbval/trunk/debian/control	2012-08-08 12:32:52 UTC (rev 12011)
@@ -5,7 +5,7 @@
 Uploaders: Laszlo Kajan <lkajan at rostlab.org>, Christof Angermüller <angermue at in.tum.de>
 Build-Depends: debhelper (>= 8), perl
 Standards-Version: 3.9.3
-Homepage: http://rostlab.org/
+Homepage: https://www.rostlab.org/owiki/index.php/PROFbval
 Vcs-Svn: svn://svn.debian.org/debian-med/trunk/packages/profbval/trunk/
 Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/profbval/trunk/
 DM-Upload-Allowed: yes
@@ -13,14 +13,19 @@
 Package: profbval
 Architecture: all
 Depends: ${perl:Depends}, ${misc:Depends}, profnet-bval
-Recommends: profphd
-Description: predicts flexibile/rigid protein residues from sequence
+Recommends: blast2, librg-utils-perl, pp-popularity-contest, profphd
+Description: predictor of flexible/rigid protein residues from sequence
  PROFbval can be useful for both protein structure and 
  function predictions. For instance, a biologist can locate potentially 
  antigenic determinants by identifying the most flexible residues on the 
  protein surface. Additionally, a crystallographer can locate residues that 
  potentially have high experimental B-values. 
  .
+ PROFbval takes the following input, further described on profbval(1):
+  * a protein sequence in a FASTA file
+  * secondary structure and solvent accessibility prediction by prof(1)
+  * an HSSP file
+ .
  Background: the mobility of a given residue on the protein surface is related
  to its functional role.
  Therefore, identification of extremely rigid or flexible 

Modified: trunk/packages/profbval/trunk/debian/copyright
===================================================================
--- trunk/packages/profbval/trunk/debian/copyright	2012-08-07 20:08:04 UTC (rev 12010)
+++ trunk/packages/profbval/trunk/debian/copyright	2012-08-08 12:32:52 UTC (rev 12011)
@@ -3,6 +3,13 @@
 Upstream-Contact: A. Schlessinger <avnersch at gmail.com>
 Source: ftp://rostlab.org/profbval/
 
+Files: examples/cad23-fil.rdbProf
+Copyright: Burkhard Rost, CUBIC NYC / LION Heidelberg
+License: GPL-2.0+
+Comment:
+ License is not indicated in this file, only copyright.
+ Therefore the license here is that of the producing program 'profphd'.
+
 Files: debian/*
 Copyright: 2009 Guy Yachdav <gyachdav at rostlab.org>
            2012 Laszlo Kajan <lkajan at rostlab.org>
@@ -15,6 +22,23 @@
 	   2006 Guy Yachdav
 License: GPL-3+
 
+License: GPL-2.0+
+ This program is free software: you can redistribute it and/or modify
+ it under the terms of the GNU General Public License as published by
+ the Free Software Foundation, either version 2 of the License, or
+ (at your option) any later version.
+ .
+ This package is distributed in the hope that it will be useful,
+ but WITHOUT ANY WARRANTY; without even the implied warranty of
+ MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+ GNU General Public License for more details.
+ .
+ You should have received a copy of the GNU General Public License
+ along with this program. If not, see <http://www.gnu.org/licenses/>.
+ .
+ On Debian systems, the complete text of the GNU General
+ Public License version 2 can be found in "/usr/share/common-licenses/GPL-2".
+ 
 License: GPL-3+
  This program is free software; you can redistribute it
  and/or modify it under the terms of the GNU General Public