[med-svn] r12013 - trunk/packages/norsnet/trunk/debian

[Laszlo Kajan]

Author: lkajan-guest
Date: 2012-08-08 12:34:34 +0000 (Wed, 08 Aug 2012)
New Revision: 12013

Modified:
   trunk/packages/norsnet/trunk/debian/changelog
   trunk/packages/norsnet/trunk/debian/control
   trunk/packages/norsnet/trunk/debian/copyright
Log:
examples/cad23-fil.rdbProf is now mentioned in d/copyright; addressed other issues of FTP masters; version is UNRELEASED

Modified: trunk/packages/norsnet/trunk/debian/changelog
===================================================================
--- trunk/packages/norsnet/trunk/debian/changelog	2012-08-08 12:33:52 UTC (rev 12012)
+++ trunk/packages/norsnet/trunk/debian/changelog	2012-08-08 12:34:34 UTC (rev 12013)
@@ -1,4 +1,4 @@
-norsnet (1.0.14-1) unstable; urgency=low
+norsnet (1.0.15-1) UNRELEASED; urgency=low
 
   * Packaged for Debian (Closes: #681108)
 

Modified: trunk/packages/norsnet/trunk/debian/control
===================================================================
--- trunk/packages/norsnet/trunk/debian/control	2012-08-08 12:33:52 UTC (rev 12012)
+++ trunk/packages/norsnet/trunk/debian/control	2012-08-08 12:34:34 UTC (rev 12013)
@@ -5,7 +5,7 @@
 Uploaders: Christian Mertes <mertes at in.tum.de>, Laszlo Kajan <lkajan at rostlab.org>
 Build-Depends: debhelper (>= 8)
 Standards-Version: 3.9.3
-Homepage: http://rostlab.org/
+Homepage: https://www.rostlab.org/owiki/index.php/Norsnet
 Vcs-Svn: svn://svn.debian.org/debian-med/trunk/packages/norsnet/trunk/
 Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/norsnet/trunk/
 DM-Upload-Allowed: yes
@@ -13,7 +13,7 @@
 Package: norsnet
 Architecture: all
 Depends: ${shlibs:Depends}, ${misc:Depends}, profnet-norsnet
-Recommends: pp-popularity-contest, profphd, profbval
+Recommends: blast2, librg-utils-perl, pp-popularity-contest, profphd, profbval
 Description: tool to identify unstructured loops in proteins
  NORSnet can distinguish between very long contiguous segments with
  non-regular secondary structure (NORS regions) and well-folded proteins.
@@ -23,3 +23,9 @@
  covered by specialized disorder predictors.  One disadvantage of this approach
  is that it is not optimal for the identification of the "average" disordered
  region.
+ .
+ NORSnet takes the following input, further described on norsnet(1):
+  * a protein sequence in a FASTA file
+  * secondary structure and solvent accessibility prediction by prof(1)
+  * an HSSP file
+  * flexible/rigid residues prediction by profbval(1)

Modified: trunk/packages/norsnet/trunk/debian/copyright
===================================================================
--- trunk/packages/norsnet/trunk/debian/copyright	2012-08-08 12:33:52 UTC (rev 12012)
+++ trunk/packages/norsnet/trunk/debian/copyright	2012-08-08 12:34:34 UTC (rev 12013)
@@ -3,6 +3,13 @@
 Upstream-Contact: A. Schlessinger <avnersch at gmail.com>
 Source: ftp://rostlab.org/norsnet/
 
+Files: examples/cad23-fil.rdbProf
+Copyright: Burkhard Rost, CUBIC NYC / LION Heidelberg
+License: GPL-2.0+
+Comment:
+ License is not indicated in this file, only copyright.
+ Therefore the license here is that of the producing program 'profphd'.
+
 Files: debian/*
 Copyright: 2009 Guy Yachdav <gyachdav at rostlab.org>
            2012 Laszlo Kajan <lkajan at rostlab.org>
@@ -15,6 +22,23 @@
            2007 Burkhard Rost <rost at rostlab.org>
 License: GPL-3+
 
+License: GPL-2.0+
+ This program is free software: you can redistribute it and/or modify
+ it under the terms of the GNU General Public License as published by
+ the Free Software Foundation, either version 2 of the License, or
+ (at your option) any later version.
+ .
+ This package is distributed in the hope that it will be useful,
+ but WITHOUT ANY WARRANTY; without even the implied warranty of
+ MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+ GNU General Public License for more details.
+ .
+ You should have received a copy of the GNU General Public License
+ along with this program. If not, see <http://www.gnu.org/licenses/>.
+ .
+ On Debian systems, the complete text of the GNU General
+ Public License version 2 can be found in "/usr/share/common-licenses/GPL-2".
+ 
 License: GPL-3+
  This program is free software; you can redistribute it
  and/or modify it under the terms of the GNU General Public