[med-svn] [SCM] picard-tools branch, master, updated. upstream/1.55-55-g44e7e9a

[Olivier Sallou]

The following commit has been merged in the master branch:
commit 44e7e9a48cf073007115ea5e0f79d32b7bd7fffd
Author: Olivier Sallou <olivier.sallou at debian.org>
Date:   Tue Aug 28 13:40:22 2012 +0200

    Used snappy1.0.3 and use latest picard-tools version 1.75

diff --git a/debian/changelog b/debian/changelog
index 660a08b..63b06ee 100644
--- a/debian/changelog
+++ b/debian/changelog
@@ -1,7 +1,7 @@
-picard-tools (1.55-1) UNRELEASED; urgency=low
+picard-tools (1.75-1) UNRELEASED; urgency=low
 
   * New upstream releases.
-  * Build-depend on libsnappy-java (debian/control).
+  * Build-depend on libsnappy1.0.3-java (debian/control).
   * Refreshed debian/patches/01-build.xml.
   * Use default java implementation.
     - debian/control: BD on default-jdk, switch runtime dependency to
diff --git a/debian/control b/debian/control
index 739e51d..dd42c4d 100644
--- a/debian/control
+++ b/debian/control
@@ -5,9 +5,9 @@ Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.
 DM-Upload-Allowed: yes
 Uploaders: Shaun Jackman <sjackman at debian.org>,
  Charles Plessy <plessy at debian.org>
-Build-Depends: ant, default-jdk, testng, libsnappy-java,
+Build-Depends: ant, default-jdk, testng, libsnappy1.0.3-java,
  debhelper (>= 7.0.50~)
-Standards-Version: 3.9.2
+Standards-Version: 3.9.3
 Homepage: http://picard.sourceforge.net/
 Vcs-Git: git://git.debian.org/git/debian-med/picard-tools.git
 Vcs-Browser: http://git.debian.org/?p=debian-med/picard-tools.git
diff --git a/debian/patches/01-build.xml b/debian/patches/01-build.xml
index e7888cf..bf424a4 100644
--- a/debian/patches/01-build.xml
+++ b/debian/patches/01-build.xml
@@ -21,7 +21,7 @@ Forwarded: no
                  <include name="**/*.jar"/>
              </fileset>
 +            <pathelement path="/usr/share/java/testng.jar"/>
-+            <pathelement path="/usr/share/java/snappy-java.jar"/>
++            <pathelement path="/usr/share/java/snappy1.0.3-java.jar"/>
          </path>
          <path  id="metrics.classpath">
              <pathelement path="${classpath}"/>

-- 
manipulate SAM and BAM files