[med-svn] [SCM] picard-tools branch, master, updated. upstream/1.75-62-g2b64957

[Olivier Sallou]

The following commit has been merged in the master branch:
commit fb82b2dfa1f47db7d9d796ee8f97a709ba298b14
Author: Olivier Sallou <olivier.sallou at debian.org>
Date:   Fri Aug 31 09:25:06 2012 +0200

    Add libjbzip2 as dependency and in classpath

diff --git a/debian/bin/picard-tools b/debian/bin/picard-tools
index f529f7d..c4515b9 100755
--- a/debian/bin/picard-tools
+++ b/debian/bin/picard-tools
@@ -62,4 +62,4 @@ EOF
 esac
 
 p=/usr/share/java
-exec java -XX:MaxPermSize=256m -cp $p/picard.jar:$p/sam.jar $main "$@"
+exec java -XX:MaxPermSize=256m -cp $p/jbzip2.jar:$p/picard.jar:$p/sam.jar $main "$@"
diff --git a/debian/control b/debian/control
index f011881..fa61ebc 100644
--- a/debian/control
+++ b/debian/control
@@ -25,7 +25,8 @@ Description: Java library to manipulate SAM and BAM files
 Package: picard-tools
 Architecture: all
 Depends: default-jre | java6-runtime, ${misc:Depends},
- libsam-java (>= ${source:Version}), ${python:Depends}
+ libsam-java (>= ${source:Version}), ${python:Depends},
+ libjbzip2-java
 Suggests: python, r-base-core
 Description: Command line tools to manipulate SAM and BAM files
  SAM (Sequence Alignment/Map) format is a generic format for storing

-- 
manipulate SAM and BAM files