[med-svn] r12580 - in trunk/packages/vcftools/trunk/debian: . patches

[Thorsten Alteholz]

Author: alteholz
Date: 2012-12-02 18:08:04 +0000 (Sun, 02 Dec 2012)
New Revision: 12580

Added:
   trunk/packages/vcftools/trunk/debian/patches/perl.patch
Modified:
   trunk/packages/vcftools/trunk/debian/changelog
   trunk/packages/vcftools/trunk/debian/control
   trunk/packages/vcftools/trunk/debian/get-orig-source
   trunk/packages/vcftools/trunk/debian/patches/series
Log:
small improvements

Modified: trunk/packages/vcftools/trunk/debian/changelog
===================================================================
--- trunk/packages/vcftools/trunk/debian/changelog	2012-11-30 16:58:01 UTC (rev 12579)
+++ trunk/packages/vcftools/trunk/debian/changelog	2012-12-02 18:08:04 UTC (rev 12580)
@@ -1,3 +1,11 @@
+vcftools (0.1.9+dfsg-2) unstable; urgency=low
+
+  * debian/control: description changed (Closes: #689058)
+  * debian/patches/perl.patch for new syntax (Closes: #689059)
+  * fix get-orig-source to handle dfsg
+
+ -- Thorsten Alteholz <debian at alteholz.de>  Sun, 02 Dev 2012 19:00:00 +0100
+
 vcftools (0.1.9+dfsg-1) UNRELEASED; urgency=low
 
   * debian/copyright:

Modified: trunk/packages/vcftools/trunk/debian/control
===================================================================
--- trunk/packages/vcftools/trunk/debian/control	2012-11-30 16:58:01 UTC (rev 12579)
+++ trunk/packages/vcftools/trunk/debian/control	2012-12-02 18:08:04 UTC (rev 12580)
@@ -15,7 +15,7 @@
 Architecture: any
 Depends: ${shlibs:Depends}, ${misc:Depends}, ${perl:Depends}
 Recommends: tabix
-Description: designed for working with VCF files
+Description: Collection of tools to work with VCF files
  VCFtools is a program package designed for working with VCF files, such as 
  those generated by the 1000 Genomes Project. The aim of VCFtools is to 
  provide methods for working with VCF files: validating, merging, comparing 

Modified: trunk/packages/vcftools/trunk/debian/get-orig-source
===================================================================
--- trunk/packages/vcftools/trunk/debian/get-orig-source	2012-11-30 16:58:01 UTC (rev 12579)
+++ trunk/packages/vcftools/trunk/debian/get-orig-source	2012-12-02 18:08:04 UTC (rev 12580)
@@ -20,6 +20,6 @@
 find . -name "*.pdf" | xargs rm -f
 cd ..
 
-GZIP="--best --no-name" tar --owner=root --group=root --mode=a+rX -czf "$PKG"_"$DVERSION".orig.tar.gz ${PKG}_${DVERSION}
+GZIP="--best --no-name" tar --owner=root --group=root --mode=a+rX -czf "$PKG"_"$DVERSION"+dfsg.orig.tar.gz ${PKG}_${DVERSION}
 rm -rf  ${PKG}_${DVERSION}
 

Added: trunk/packages/vcftools/trunk/debian/patches/perl.patch
===================================================================
--- trunk/packages/vcftools/trunk/debian/patches/perl.patch	                        (rev 0)
+++ trunk/packages/vcftools/trunk/debian/patches/perl.patch	2012-12-02 18:08:04 UTC (rev 12580)
@@ -0,0 +1,15 @@
+Description: Don't use qw(...) as parentheses anymore (bad syntax now)
+Author: Thorsten Alteholz <debian at alteholz.de>
+Index: vcftools_0.1.9/perl/Vcf.pm
+===================================================================
+--- vcftools_0.1.9.orig/perl/Vcf.pm	2012-05-10 07:53:15.000000000 +0200
++++ vcftools_0.1.9/perl/Vcf.pm	2012-12-02 18:55:40.000000000 +0100
+@@ -1619,7 +1619,7 @@
+     }
+     if ( defined $out ) 
+     {
+-        for my $key qw(fmtA fmtG infoA infoG) { if ( !exists($$out{$key}) ) { $$out{$key}=[] } }
++        for my $key (qw(fmtA fmtG infoA infoG)) { if ( !exists($$out{$key}) ) { $$out{$key}=[] } }
+     }
+     return $out;
+ }

Modified: trunk/packages/vcftools/trunk/debian/patches/series
===================================================================
--- trunk/packages/vcftools/trunk/debian/patches/series	2012-11-30 16:58:01 UTC (rev 12579)
+++ trunk/packages/vcftools/trunk/debian/patches/series	2012-12-02 18:08:04 UTC (rev 12580)
@@ -1,2 +1,3 @@
 make.patch
 use-dpkg-buildflags.patch
+perl.patch