[med-svn] r12587 - in trunk/packages/biojava3/trunk/debian: . patches

[olivier sallou]

Author: osallou-guest
Date: 2012-12-05 08:48:48 +0000 (Wed, 05 Dec 2012)
New Revision: 12587

Added:
   trunk/packages/biojava3/trunk/debian/patches/fix_ascii_characters_mapping
Modified:
   trunk/packages/biojava3/trunk/debian/changelog
   trunk/packages/biojava3/trunk/debian/patches/series
Log:
fix character mapping issue in pbuilder

Modified: trunk/packages/biojava3/trunk/debian/changelog
===================================================================
--- trunk/packages/biojava3/trunk/debian/changelog	2012-12-04 19:02:34 UTC (rev 12586)
+++ trunk/packages/biojava3/trunk/debian/changelog	2012-12-05 08:48:48 UTC (rev 12587)
@@ -1,10 +1,8 @@
-biojava3-live (3.0.5-1) UNRELEASED; urgency=low
+biojava3-live (3.0.5-1) unstable; urgency=low
 
   * New upstream release
   * Use forester 1.005
 
-  # Waiting for source availability of Forester in biojava3 download site.
-
  -- Olivier Sallou <osallou at debian.org>  Sun, 02 Dec 2012 22:35:09 +0100
 
 biojava3-live (3.0.4-2) unstable; urgency=low

Added: trunk/packages/biojava3/trunk/debian/patches/fix_ascii_characters_mapping
===================================================================
--- trunk/packages/biojava3/trunk/debian/patches/fix_ascii_characters_mapping	                        (rev 0)
+++ trunk/packages/biojava3/trunk/debian/patches/fix_ascii_characters_mapping	2012-12-05 08:48:48 UTC (rev 12587)
@@ -0,0 +1,17 @@
+Subject: ASCII error in pbuilder
+Description: unmappable character for encoding ASCII
+Author: Olivier Sallou <osallou at debian.org>
+Last-Updated: 2012-12-05
+Forwarded: yes
+Bug: http://code.google.com/p/forester/issues/detail?id=1
+--- a/biojava3-forester/src/main/java/org/forester/test/Test.java
++++ b/biojava3-forester/src/main/java/org/forester/test/Test.java
+@@ -1310,7 +1310,7 @@
+                 return false;
+             }
+             if ( !( t3_rt.getNode( "root node" ).getNodeData().getReference().getDescription()
+-                    .equals( "Aguinaldo, A. M. A.; J. M. Turbeville, L. S. Linford, M. C. Rivera, J. R. Garey, R. A. Raff, & J. A. Lake (1997). \"Evidence for a clade of nematodes, arthropods and other moulting animals\". Nature 387 (6632): 489–493." ) ) ) {
++                    .equals( "Aguinaldo, A. M. A.; J. M. Turbeville, L. S. Linford, M. C. Rivera, J. R. Garey, R. A. Raff, & J. A. Lake (1997). \"Evidence for a clade of nematodes, arthropods and other moulting animals\". Nature 387 (6632): 489-493." ) ) ) {
+                 return false;
+             }
+             if ( !t3_rt.getNode( "root node" ).getNodeData().getTaxonomy().getTaxonomyCode().equals( "ECDYS" ) ) {

Modified: trunk/packages/biojava3/trunk/debian/patches/series
===================================================================
--- trunk/packages/biojava3/trunk/debian/patches/series	2012-12-04 19:02:34 UTC (rev 12586)
+++ trunk/packages/biojava3/trunk/debian/patches/series	2012-12-05 08:48:48 UTC (rev 12587)
@@ -1,2 +1,3 @@
 use_simple_json
 fix_code_to_support_latest_jmol
+fix_ascii_characters_mapping